association	dataset	threshold value	standardized value
bone inflammation disease	GWASdb SNP-Disease Associations	1.0	0.323348
REH	CCLE Cell Line Gene Expression Profiles	1.0	1.89783
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49879
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.885532
RI1	CCLE Cell Line Gene Expression Profiles	1.0	2.68942
C32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.70078
arthritis	GWASdb SNP-Disease Associations	1.0	0.3553
HELA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33789
all	GWASdb SNP-Phenotype Associations	1.0	0.031815
rheumatoid arthritis	GWASdb SNP-Phenotype Associations	1.0	1.05869
rheumatoid arthritis	GWASdb SNP-Disease Associations	1.0	1.21019
SK-MES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855491
NUDUL1	CCLE Cell Line Gene Expression Profiles	1.0	1.36995
COLO 853	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.980913
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06007
abnormal joint morphology	GWASdb SNP-Phenotype Associations	1.0	0.232798
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.82502
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.850952
NCIH1568	CCLE Cell Line Gene Expression Profiles	-1.0	-2.11418
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1545
neoplasm of the breast	GWASdb SNP-Phenotype Associations	1.0	0.736319
PLC/PRF/5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04141
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.945911
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66021
CALU-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.854555
JIYOYE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55567
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.926702
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855491
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.60725
breast carcinoma	GWASdb SNP-Phenotype Associations	1.0	0.736319
Arthritis, Rheumatoid	dbGAP Gene-Trait Associations	1.0	0.518003
OTX2_silencing_GDS4472_136_human_D425 medulloblastoma (MB) cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
SW 527	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.91883
CAL-120	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02733
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49031
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22577
SUDHL8	CCLE Cell Line Gene Expression Profiles	1.0	1.68688
BEN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56193
RS411	CCLE Cell Line Gene Expression Profiles	1.0	2.16992
DB	CCLE Cell Line Gene Expression Profiles	1.0	1.70977
EB2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.895251
YAP_OE_GDS3220_32_human_MCF10A	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
NCI-H1648	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15495
SK-N-DZ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02849
LOX-1_OE_GDS4262_432_human_HAECT - aortic endothelial cell line - 2 Hours	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
UMC-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.94179
A2780	CCLE Cell Line Gene Expression Profiles	-1.0	-1.88446
HS611T	CCLE Cell Line Gene Expression Profiles	1.0	1.40887
SARS-CoV MA15_Day7-PFU-10^4_None_GSE33266	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.99255
SKMEL1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.74347
A375	CCLE Cell Line Gene Expression Profiles	-1.0	-2.9998
MHHCALL3	CCLE Cell Line Gene Expression Profiles	1.0	1.74545
organ system cancer	GWASdb SNP-Disease Associations	1.0	0.045339
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24606
HT	CCLE Cell Line Gene Expression Profiles	1.0	1.94894
arthritis, rheumatoid	GAD Gene-Disease Associations	1.0	null
MKN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06116
TMD8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78498
disease	GWASdb SNP-Disease Associations	1.0	0.030022
TK-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11291
LI7	CCLE Cell Line Gene Expression Profiles	-1.0	-1.81811
abnormality of skeletal morphology	GWASdb SNP-Phenotype Associations	1.0	0.079384
EKVX	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.945911
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22577
NCI-H716	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.45428
KARPAS422	CCLE Cell Line Gene Expression Profiles	1.0	1.57221
SNU-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.66247
MEWO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.65435
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13856
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06326
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.854555
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30178
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50742
RH41	CCLE Cell Line Gene Expression Profiles	-1.0	-1.80813
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22577
Kidney Failure, Chronic	HuGE Navigator Gene-Phenotype Associations	1.0	null
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41234
Type 1 diabetes mellitus_T lymphocyte_GSE10586	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.28534
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.854555
NALM6	CCLE Cell Line Gene Expression Profiles	1.0	1.61198
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.60725
NALM1	CCLE Cell Line Gene Expression Profiles	1.0	1.45129
JEKO1	CCLE Cell Line Gene Expression Profiles	1.0	2.19198
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855491
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855491
LOX-1_OE_GDS4262_435_human_HAECT - aortic endothelial cell line - 24 Hours	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
VMCUB1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.50308
SUPB15	CCLE Cell Line Gene Expression Profiles	1.0	1.88841
SUM 149PT	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.21579
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.885532
disease of anatomical entity	GWASdb SNP-Disease Associations	1.0	0.0301
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.854555
abnormality of the breast	GWASdb SNP-Phenotype Associations	1.0	0.392403
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855491
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.97675
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00505
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.925676
MIA PACA-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855491
LN18	CCLE Cell Line Gene Expression Profiles	-1.0	-1.48837
NCIH2106	CCLE Cell Line Gene Expression Profiles	-1.0	-1.47989
HS737T	CCLE Cell Line Gene Expression Profiles	-1.0	-2.0105
NUDHL1	CCLE Cell Line Gene Expression Profiles	1.0	1.39364
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.913977
PLK1_druginhibition_181_GSE46856	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.68563
NCI-H2810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.851959
HS675T	CCLE Cell Line Gene Expression Profiles	-1.0	-1.61354
NCI-H1581	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20919
DOHH2	CCLE Cell Line Gene Expression Profiles	1.0	1.44725
MDA-MB-468	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.45911
PANC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.60536
NALM19	CCLE Cell Line Gene Expression Profiles	1.0	3.05406
EPCAM_OE_GDS4887_343_human_IL-28B	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
arthritis	GWASdb SNP-Phenotype Associations	1.0	0.270188
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.992299
C2BBE1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.5929
SKMEL31	CCLE Cell Line Gene Expression Profiles	-1.0	-1.91216
icSARS CoV_60Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.21084
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.925676
BFTC-905	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.33355
bone disease	GWASdb SNP-Disease Associations	1.0	0.179015
abnormality of the skeletal system	GWASdb SNP-Phenotype Associations	1.0	0.070995
HS571T	CCLE Cell Line Gene Expression Profiles	-1.0	-2.10931
NUGC-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.91883
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855491
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00505
Psoriasis vulgaris_Skin tissue_GSE13355	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.49673
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.77468
OCILY19	CCLE Cell Line Gene Expression Profiles	1.0	1.81194
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.21862
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18933
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16556
MKN-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.992299
nrf1_22586274_liver_lof_mouse_gpl4134_gse35124	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.053713
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855491
NB4	CCLE Cell Line Gene Expression Profiles	-1.0	-2.4431
JHH-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41234
KOPN8	CCLE Cell Line Gene Expression Profiles	1.0	1.46479
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00505
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41214
MOR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.21579
disease of cellular proliferation	GWASdb SNP-Disease Associations	1.0	0.042451
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.926702
SK-CO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41529
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.06954
Response to tocilizumab in rheumatoid arthritis	GWAS Catalog SNP-Phenotype Associations	1.0	0.238523
connective tissue disease	GWASdb SNP-Disease Associations	1.0	0.142685
phenotypic abnormality	GWASdb SNP-Phenotype Associations	1.0	0.031873
neoplasm by anatomical site	GWASdb SNP-Phenotype Associations	1.0	0.052979
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.992299
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06235
valproic acid_homo sapiens_gpl570_gse14973	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13856
COLO 857	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04778
MUTZ5	CCLE Cell Line Gene Expression Profiles	1.0	1.52022
cancer	GWASdb SNP-Disease Associations	1.0	0.043106
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45097
breast cancer	GWASdb SNP-Disease Associations	1.0	0.841599
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.926702
KYSE-450	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.914804
ECC10	CCLE Cell Line Gene Expression Profiles	-1.0	-1.63121
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08153
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08153
musculoskeletal system disease	GWASdb SNP-Disease Associations	1.0	0.102817
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10784
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.851959
SEM	CCLE Cell Line Gene Expression Profiles	1.0	2.40032
RAJI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07
RCHACV	CCLE Cell Line Gene Expression Profiles	1.0	1.60804
HT-115	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18933
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13856
MHHCALL2	CCLE Cell Line Gene Expression Profiles	1.0	2.0249
thoracic cancer	GWASdb SNP-Disease Associations	1.0	0.459114
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24526
SET-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.67725
KURAMOCHI	CCLE Cell Line Gene Expression Profiles	-1.0	-1.45349
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08755
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30252
YY2_KD_GDS3788_490_human_HeLa	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06116
GRANTA519	CCLE Cell Line Gene Expression Profiles	1.0	1.34816
RKN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.972591
253JBV	CCLE Cell Line Gene Expression Profiles	-1.0	-1.73758
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22577
neoplasm	GWASdb SNP-Phenotype Associations	1.0	0.0512
LN319	CCLE Cell Line Gene Expression Profiles	-1.0	-1.64444
LN443	CCLE Cell Line Gene Expression Profiles	-1.0	-1.73717
697	CCLE Cell Line Gene Expression Profiles	1.0	1.50706
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19807
HCC60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.899379
PRC_DEPLETION_GDS3532_96_human_U2OS cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
KASUMI2	CCLE Cell Line Gene Expression Profiles	1.0	1.57223
SNU840	CCLE Cell Line Gene Expression Profiles	-1.0	-2.13928
SK-OV-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.91056