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Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.06998 SW 1417 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.932295 AN3CA CCLE Cell Line Gene Expression Profiles 1.0 1.35038 trachea BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -1.31924 H4K5ac_IMR90 Roadmap Epigenomics Histone Modification Site Profiles 1.0 null LOUCY CCLE Cell Line Gene CNV Profiles -1.0 -1.60854 HCC4011 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.75955 BRD4-25478319-HGPS-HUMAN ChEA Transcription Factor Targets 2022 1.0 null CTCF_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null vomeralnasalorgan.VMO. BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -2.1207 central nervous system disease GWASdb SNP-Disease Associations 1.0 0.100578 abnormality of forebrain morphology GWASdb SNP-Phenotype Associations 1.0 0.257723 STAT3_deficiency_GDS3106_58_mouse_type II alveolar cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null nervous system disease GWASdb SNP-Disease Associations 1.0 0.052454 CALU-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.76254 MYOG ENCODE Transcription Factor Targets 1.0 null SETDB1_KO_GSE40296_7_mouse_brain (telencephalon) GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null COLO 741 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.847409 TCC-PAN2 Klijn et al., Nat. 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Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.13182 SW1573 CCLE Cell Line Gene CNV Profiles 1.0 1.44524 UBB_KO_GDS3906_496_mouse_Testis - 28 Days GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null SKUT1 CCLE Cell Line Gene Expression Profiles 1.0 1.81429 MYC ENCODE Transcription Factor Targets 1.0 null FOSL1_KO_GSE43695_680_mouse_lung, PBS treatment GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null A-427 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.04506 SHSY5Y CCLE Cell Line Gene Expression Profiles -1.0 -1.54764 sirt3_21397863_brown_adipose_lof_mouse_gpl1261_gds4058 GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations -1.0 -0.45418 MDST8 CCLE Cell Line Gene Expression Profiles 1.0 1.53553 SCC-15 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.932295 NR3C1-27076634-BEAS2B-HUMAN-LUNG-INFLAMMATION ChEA Transcription Factor Targets 2022 1.0 null RCM1 CCLE Cell Line Gene Expression Profiles -1.0 -1.83406 bipolar disorder GWASdb SNP-Disease Associations 1.0 0.675898 MHH-NB-11 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.857022 CEBPB_myocyte_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null DMS 454 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.847409 OAW28 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.79855 H3K27me3_GM06990_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null DMS 79 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.19657 TC71 CCLE Cell Line Gene CNV Profiles -1.0 -1.4951 DU4475 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.59479 HL60 CCLE Cell Line Gene CNV Profiles -1.0 -1.48452 DEL CCLE Cell Line Gene CNV Profiles 1.0 1.34783 H2AFZ_mammary epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCIH209 CCLE Cell Line Gene CNV Profiles -1.0 -1.77094 CAKI-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.965987 disease of mental health GWASdb SNP-Disease Associations 1.0 0.046743 G111 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.13036 CLPP_KO_GSE40207_378_mouse_Testies GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null GP2D Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.71798 HDQP1 CCLE Cell Line Gene Expression Profiles -1.0 -1.68134 KDM5B_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null MYC_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H2081 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.0298 MALME3M CCLE Cell Line Gene CNV Profiles -1.0 -1.32814 PANC0213 CCLE Cell Line Gene Expression Profiles -1.0 -2.17558 OKAJIMA Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.846718 H3K27ac_fibroblast of lung_hg19_2 ENCODE Histone Modification Site Profiles 1.0 null disease GWASdb SNP-Disease Associations 1.0 0.027809 H3K27me3_G1E-ER4_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H2AFZ ENCODE Transcription Factor Targets 1.0 null KP4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.26211 HCC515 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.847409 SW837 CCLE Cell Line Gene CNV Profiles 1.0 1.71471 SW1116 CCLE Cell Line Gene Expression Profiles -1.0 -1.53898 LS1034 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.04506 CEBPB_C2C12_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null RCOR1-19997604-NEURONS-MOUSE ChEA Transcription Factor Binding Site Profiles 1.0 null TM31 CCLE Cell Line Gene Expression Profiles -1.0 -2.33514 MCF10DCIS.COM Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.11408 brain disease GWASdb SNP-Disease Associations 1.0 0.675898 RKO CCLE Cell Line Gene Expression Profiles 1.0 2.16104 H3K36me3_fibroblast of lung_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SW 948 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.889901 phenotypic abnormality GWASdb SNP-Phenotype Associations 1.0 0.028523 F36P CCLE Cell Line Gene Expression Profiles -1.0 -1.45974 preoptic BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -1.15245 SW1088 CCLE Cell Line Gene CNV Profiles 1.0 1.57949 BT20 CCLE Cell Line Gene Expression Profiles -1.0 -1.47408 BICR16 CCLE Cell Line Gene Expression Profiles 1.0 2.3006 disease of anatomical entity GWASdb SNP-Disease Associations 1.0 0.027 CFPAC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.876199 OAW42 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.24235 SPARC_Deficiency_GDS3636_524_mouse_Lens epithelium GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null VMRCRCZ CCLE Cell Line Gene CNV Profiles 1.0 1.38805 HMX1_Deficiency_GDS4810_324_mouse_Retinas of C57BL/6J GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null ESRRG_Deficiency_GDS2811_637_mouse_Fetal heart - Heterozygous null mutant GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null COLO 829 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.931629 SKRC31 CCLE Cell Line Gene CNV Profiles 1.0 1.41954 SNU840 CCLE Cell Line Gene Expression Profiles -1.0 -3.18643 DMS153 CCLE Cell Line Gene CNV Profiles -1.0 -1.3997 H2AFZ_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCIH2291 CCLE Cell Line Gene Expression Profiles 1.0 1.90906 UACC62 CCLE Cell Line Gene Expression Profiles 1.0 1.58918 KDM5A_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null A-Netherlands-602-2009(H1N1)_12Hour_None_GSE40844 GEO Signatures of Differentially Expressed Genes for Viral Infections 1.0 1.46571 HCC1937 CCLE Cell Line Gene Expression Profiles -1.0 -1.97984 CLPP_KO_GDS4791_374_mouse_Testies GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null all GWASdb SNP-Phenotype Associations 1.0 0.028501 IMR32 CCLE Cell Line Gene Expression Profiles -1.0 -1.67896 SW 1116 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.12105 ESET_KO_GDS4508_348_mouse_Dorsal telencephalon from E14.5 embryos GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null AMO-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.4747 L-363 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.51302 SNU466 CCLE Cell Line Gene Expression Profiles 1.0 1.45217 SOX4 MotifMap Predicted Transcription Factor Targets 1.0 null MCF 10A Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.67055 C3A Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.954152 PFEIFFER Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.3802 KG1C CCLE Cell Line Gene CNV Profiles 1.0 1.70229 SR Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.51302 MOLM-16 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.19657 COLO205 CCLE Cell Line Gene Expression Profiles 1.0 1.85881 SNU-620 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.77488 H2AFZ_fibroblast of lung_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H1092 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.889901 H3K79me2_IMR90 Roadmap Epigenomics Histone Modification Site Profiles 1.0 null mood disorder GWASdb SNP-Disease Associations 1.0 0.321511 ST6GAL1_Deficiency_GDS3151_608_mouse_Mammary tumors GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null NCIH596 CCLE Cell Line Gene Expression Profiles -1.0 -1.58457 LC1SQSF CCLE Cell Line Gene CNV Profiles 1.0 2.30173 SNU1033 CCLE Cell Line Gene Expression Profiles -1.0 -1.70785 pyrazinamide_mus musculus_gpl6246_gse48027 GEO Signatures of Differentially Expressed Genes for Small Molecules -1.0 null SJSA1 CCLE Cell Line Gene CNV Profiles 1.0 1.4566 cognitive disorder GWASdb SNP-Disease Associations 1.0 0.110147 KLE CCLE Cell Line Gene CNV Profiles 1.0 1.52749 OCIM1 CCLE Cell Line Gene CNV Profiles -1.0 -2.63621 CTCF_fibroblast of lung_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SET-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.61693 NCI-H520 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.72674 H4K91ac_IMR90 Roadmap Epigenomics Histone Modification Site Profiles 1.0 null NCIH1963 CCLE Cell Line Gene CNV Profiles -1.0 -1.67146 HCC2279 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.857317 KDM5A ENCODE Transcription Factor Targets 1.0 null SK-MEL-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.67055 PANC 03.27 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.04506 HS746T CCLE Cell Line Gene Expression Profiles 1.0 2.65587 H2BK15ac_IMR90 Roadmap Epigenomics Histone Modification Site Profiles 1.0 null thyroid BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 1.46784 NCI-H1355 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.20837 KG1 CCLE Cell Line Gene CNV Profiles -1.0 -1.81637 abnormality of the nervous system GWASdb SNP-Phenotype Associations 1.0 0.042904 NCIH1563 CCLE Cell Line Gene Expression Profiles 1.0 1.55539 HS766T CCLE Cell Line Gene CNV Profiles 1.0 2.3098 M059K CCLE Cell Line Gene CNV Profiles 1.0 1.35182 G96 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.987656 BCP1 CCLE Cell Line Gene CNV Profiles -1.0 -1.56802 OCI-M1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.64948 pancreas BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -1.38892 AN3 CA Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.11408 MG63 CCLE Cell Line Gene CNV Profiles 1.0 1.35654 SR-786 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.3802 SU-DHL-16 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.78929 MYOD1_myocyte_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H1435 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.31351 MDA-MB-436 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.22772 HCC1500 CCLE Cell Line Gene CNV Profiles 1.0 1.97129 CHAGO-K-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.67055 Diabetic Neuropathy_Sciatic Nerve_GSE11343 GEO Signatures of Differentially Expressed Genes for Diseases 1.0 1.94163 CAPAN1 CCLE Cell Line Gene CNV Profiles -1.0 -1.9412 OC314 CCLE Cell Line Gene Expression Profiles -1.0 -1.79059 LC1F CCLE Cell Line Gene CNV Profiles 1.0 1.9152 CLPP_KO_GDS4791_104_mouse_testis GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null testis BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 2.09859 spinalcordlower BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -0.964221 MDST8 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.10576 abnormality of the cerebrum GWASdb SNP-Phenotype Associations 1.0 0.257723 COR-L279 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.23691 LN-229 Klijn et al., Nat. 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Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.00587 NCIH322 CCLE Cell Line Gene Expression Profiles 1.0 2.28043 neuro2a BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 1.23083 8MGBA CCLE Cell Line Gene Expression Profiles -1.0 -1.49968 NCI-H209 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.75345 MYOD1 ENCODE Transcription Factor Targets 1.0 null DAN-G Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.889901 TCF12_myocyte_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC630 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.973657 IGR39 CCLE Cell Line Gene CNV Profiles 1.0 1.60451 FTC133 CCLE Cell Line Gene Expression Profiles 1.0 1.7265 CREM-20920259-GC1-SPG-MOUSE ChEA Transcription Factor Binding Site Profiles 1.0 null H2AFZ_astrocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null RAB3A_KO_GDS2483_701_mouse_Hippocampus GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null HCC1500 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.04506 SNU61 CCLE Cell Line Gene CNV Profiles -1.0 -2.0522 TC71 CCLE Cell Line Gene Expression Profiles 1.0 1.57513 ezetimibe_mus musculus_gpl2995_gse39813 GEO Signatures of Differentially Expressed Genes for Small Molecules 1.0 null KDM5B ENCODE Transcription Factor Targets 1.0 null SW 982 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.51302 abnormality of the cerebral white matter GWASdb SNP-Phenotype Associations 1.0 0.579165 COLO 680N Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.22841 MDAMB415 CCLE Cell Line Gene CNV Profiles 1.0 1.6935 estradiol_homo sapiens_gpl14550_gse35034 GEO Signatures of Differentially Expressed Genes for Small Molecules -1.0 null AMO1 CCLE Cell Line Gene CNV Profiles -1.0 -1.35531 DU4475 CCLE Cell Line Gene CNV Profiles -1.0 -1.76124 1321N1 CCLE Cell Line Gene CNV Profiles 1.0 3.26542 morphological abnormality of the central nervous system GWASdb SNP-Phenotype Associations 1.0 0.08223 COR-L88 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.19719 H3K4me3_testis_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null HEC-1-A Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.38395 POLR2A ENCODE Transcription Factor Targets 1.0 null P3HR1 CCLE Cell Line Gene Expression Profiles 1.0 1.40831 GP2D CCLE Cell Line Gene CNV Profiles -1.0 -1.49984 OAW28 CCLE Cell Line Gene CNV Profiles -1.0 -1.64417 KMS-34 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.23691 TYK-NU.CP-R Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.858497 NCI-H2171 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.31293 CL11 CCLE Cell Line Gene Expression Profiles -1.0 -1.62535 MG-63 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.964755 SNU16 CCLE Cell Line Gene Expression Profiles -1.0 -2.07144 EKVX Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.847409 CJM CCLE Cell Line Gene Expression Profiles -1.0 -2.21152 CEBPB ENCODE Transcription Factor Targets 1.0 null LTBR_INHIBITION - 27 Day_GDS2005_731_mouse_Lymph nodes (MG-430B) GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null HL-60 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.61693 cerebralcortex BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 0.890326 FXR MotifMap Predicted Transcription Factor Targets 1.0 null NCI-H2810 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.877411 OPM-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.19657 CEBPB_myocyte_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SNU520 CCLE Cell Line Gene Expression Profiles -1.0 -1.93631 KMS-12-PE Klijn et al., Nat. 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