association	dataset	threshold value	standardized value
COLO 792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.984406
hsa-miR-3166	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
SNU878	CCLE Cell Line Gene Expression Profiles	1.0	1.55557
CTCF	ENCODE Transcription Factor Targets	1.0	null
CTCFL	ENCODE Transcription Factor Targets	1.0	null
hsa-miR-650	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
SNUC1	CCLE Cell Line Gene Expression Profiles	1.0	1.78346
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14078
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.1567
CTCF_GM12874_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03086
WM2664	CCLE Cell Line Gene Expression Profiles	-1.0	-2.20043
CTCF_GM12891_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS2_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RBBP5	ENCODE Transcription Factor Targets	1.0	null
HDAC2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
501A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.73128
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03086
hsa-miR-4474-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
SNU899	CCLE Cell Line Gene Expression Profiles	1.0	1.58649
HS 936.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.846466
CTCF_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
A-427	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.58062
CTCF_HepG2_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_H1 BMP4 Derived Trophoblast Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CTCF_mammary epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90985
CTCF_A549_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-4435	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.846466
hsa-miR-3157-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
CTCF_SK-N-SH_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.897227
IMR-32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07782
hsa-miR-4471	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
SK-N-FI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16294
TE6	CCLE Cell Line Gene CNV Profiles	1.0	1.59167
CTCF_retinal pigment epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KCI-MOH1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.961519
BT474	CCLE Cell Line Gene Expression Profiles	-1.0	-2.47204
HCC1500	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34772
HDAC2	ENCODE Transcription Factor Targets	1.0	null
CTCF_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDAMB453	CCLE Cell Line Gene CNV Profiles	-1.0	-2.44787
CTCF_HCT116_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO 678	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.882185
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.997596
HCC1937	CCLE Cell Line Gene Expression Profiles	1.0	1.977
hsa-miR-4448	TargetScan Predicted Conserved microRNA Targets	1.0	0.714812
UBTF	ENCODE Transcription Factor Targets	1.0	null
888	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07532
hsa-miR-644	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21846
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.03937
hsa-miR-1262	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
RAD21_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RAD21	ENCODE Transcription Factor Targets	1.0	null
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05715
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03086
hsa-miR-544b	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
NCI-H2135	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856327
EZH2_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.852182
GI1	CCLE Cell Line Gene CNV Profiles	1.0	1.46664
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03086
MDA-MB-468	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10144
TAL1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.03937
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53682
RBPJ-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
CTCF_BE2C_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-4286	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
H3K9me3_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CTCF_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11903
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.86439
CTCF_H1-hESC_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EFE184	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43431
hsa-miR-4264	TargetScan Predicted Conserved microRNA Targets	1.0	0.598666
HPAC	CCLE Cell Line Gene Expression Profiles	1.0	1.53611
CHD1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962599
hsa-miR-3116	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
KP2	CCLE Cell Line Gene CNV Profiles	-1.0	-2.01664
EZH2	ENCODE Transcription Factor Targets	1.0	null
JHOS2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63526
CAL851	CCLE Cell Line Gene Expression Profiles	-1.0	-1.57987
SKNFI	CCLE Cell Line Gene CNV Profiles	1.0	1.46957
HDAC1	ENCODE Transcription Factor Targets	1.0	null
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90985
CTCF_K562_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU1272	CCLE Cell Line Gene CNV Profiles	-1.0	-1.65905
SNU1214	CCLE Cell Line Gene CNV Profiles	1.0	1.68258
SCC9	CCLE Cell Line Gene Expression Profiles	1.0	1.61271
hsa-miR-3622a-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
H3K4me1_NT2-D1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.86873
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46488
OAW28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23774
COV644	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.852182
ALEXANDERCELLS	CCLE Cell Line Gene CNV Profiles	1.0	1.35952
MDAMB157	CCLE Cell Line Gene Expression Profiles	-1.0	-1.48465
hsa-miR-370	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
CTCF_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
E2A	MotifMap Predicted Transcription Factor Targets	1.0	null
H3K4me1_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
CALU-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33373
hsa-miR-4419b	TargetScan Predicted Conserved microRNA Targets	1.0	0.115091
NCIH2227	CCLE Cell Line Gene Expression Profiles	-1.0	-1.86016
NCI-H727	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.74167
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30122
hsa-miR-3149	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
CTCF_HeLa-S3_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-4254	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27053
U937	CCLE Cell Line Gene CNV Profiles	1.0	1.61441
hsa-miR-588	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
NCIH1105	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55947
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53477
CTCF_MCF-7_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962599
hsa-miR-4538	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
hsa-miR-3612	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
NCIH211	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46819
CTCF_A549_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-432	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896732
H3K4me1_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30122
MCF10DCIS.COM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.897227
hsa-miR-554	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
CTCF_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
UBTF_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_kidney epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
hsa-miR-4739	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
hsa-miR-542-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
CTCF_GM06990_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
AP-2rep	MotifMap Predicted Transcription Factor Targets	1.0	null
KHM1B	CCLE Cell Line Gene Expression Profiles	1.0	2.2191
CTCF_MCF-7_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33177
hsa-miR-4532	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
H3K9ac_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K9ac_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
hsa-miR-4279	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
HLFA	CCLE Cell Line Gene Expression Profiles	-1.0	-1.75813
HCC44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.928002
TE8	CCLE Cell Line Gene CNV Profiles	1.0	1.67214
BICR56	CCLE Cell Line Gene Expression Profiles	1.0	1.77116
H4K20me1_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
hsa-miR-626	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
CTCF_HeLa-S3_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21818
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
H3K27ac_iPS DF 19.11	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
MORCPR	CCLE Cell Line Gene CNV Profiles	1.0	2.4047
PECAPJ41CLONED2	CCLE Cell Line Gene Expression Profiles	1.0	1.7049
BICR16	CCLE Cell Line Gene Expression Profiles	1.0	1.97924
LUDLU1	CCLE Cell Line Gene CNV Profiles	1.0	1.3579
POLR2A_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.994433
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28293
SNU-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.832691
hsa-miR-4453	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
hsa-miR-3122	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
H3K9ac_NT2-D1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SW620	CCLE Cell Line Gene Expression Profiles	-1.0	-2.05189
H3K27me3_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
NCIH520	CCLE Cell Line Gene Expression Profiles	-1.0	-1.53134
CTCF_HEK293_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TAL1	ENCODE Transcription Factor Targets	1.0	null
U266B1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.69218
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
CMK115	CCLE Cell Line Gene CNV Profiles	1.0	1.74057
SNU-668	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.85122
HCC1428	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42175
RBBP5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KDM5B	ENCODE Transcription Factor Targets	1.0	null
CTCF_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MC116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39728
hsa-miR-3664-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
NCI-H226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.918151
hsa-miR-661	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
CTCF_HepG2_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.931173
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21948
PUR1	MotifMap Predicted Transcription Factor Targets	1.0	null
hsa-miR-3194-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
H3K27me3_NT2-D1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_GM12892_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
8MGBA	CCLE Cell Line Gene Expression Profiles	-1.0	-1.54657
KDM5B_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LOVO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03617
EKVX	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15996
CORL279	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37095
MKN45	CCLE Cell Line Gene CNV Profiles	1.0	1.84763
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38346
RBPJ	ChEA Transcription Factor Targets	1.0	null
CTCFL_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
WSU-DLCL2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.50279
CTCF_H54_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MCF7	CCLE Cell Line Gene CNV Profiles	1.0	2.0709
NCIH2291	CCLE Cell Line Gene Expression Profiles	-1.0	-1.62172
LC1SQSF	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34845
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.58062
NCIH1568	CCLE Cell Line Gene CNV Profiles	1.0	1.44255
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21846
NCI-H1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.913813
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10261
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.61984
CHD1	ENCODE Transcription Factor Targets	1.0	null
K562	CCLE Cell Line Gene Expression Profiles	-1.0	-1.52452
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.897227
CTCF_MCF-7_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OAW28	CCLE Cell Line Gene CNV Profiles	-1.0	-2.10165
H3K4me1_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
SNU283	CCLE Cell Line Gene CNV Profiles	-1.0	-1.96023
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
UMUC3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44594
hsa-miR-490-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
KNS81	CCLE Cell Line Gene CNV Profiles	-1.0	-1.80337
H3K4me2_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
KMRC3	CCLE Cell Line Gene Expression Profiles	1.0	2.77769
REC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70593
KP4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38346
hsa-miR-147	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
CTCF_BE2C_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-4701-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49325
hsa-miR-3607-3p	TargetScan Predicted Conserved microRNA Targets	1.0	0.714812
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30122
COLO704	CCLE Cell Line Gene Expression Profiles	-1.0	-1.46724
CTCF_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
hsa-miR-4436a	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
NCI-H441	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.961519
SHSY5Y	CCLE Cell Line Gene Expression Profiles	-1.0	-1.64637
CTCF_MCF-7_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HS-SULTAN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03617
NCIH2122	CCLE Cell Line Gene CNV Profiles	1.0	1.535
POLR2A	ENCODE Transcription Factor Targets	1.0	null
ZNF263	ENCODE Transcription Factor Targets	1.0	null
hsa-miR-4786-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33373
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15996
NCI-H345	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896732
hsa-miR-4314	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
PK-45H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896107
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17741
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.06248
U266B1	CCLE Cell Line Gene CNV Profiles	1.0	1.5582
POLR2AphosphoS5_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
H4	CCLE Cell Line Gene CNV Profiles	1.0	1.76642
KLM1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.51343
CTCF_A549_hg19_9	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PIK3CA_druginhibition_57_GSE17785	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	2.47336
CTCF_MCF-7_hg19_9	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CPCN	CCLE Cell Line Gene Expression Profiles	1.0	2.162
H3K27me3_iPS DF 19.11	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
HOP-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.913813
SKMEL3	CCLE Cell Line Gene CNV Profiles	1.0	3.11722
KYSE-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896732
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03086
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-569	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
H3K4me3_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07532
COLO741	CCLE Cell Line Gene CNV Profiles	1.0	2.10071
HCC4011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10261
hsa-miR-550a	TargetScan Predicted Conserved microRNA Targets	1.0	0.23348
hsa-miR-2861	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
SHP77	CCLE Cell Line Gene Expression Profiles	1.0	2.86171
CTCF_bronchial epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
WSUDLCL2	CCLE Cell Line Gene CNV Profiles	-1.0	-2.44319
COLO775	CCLE Cell Line Gene CNV Profiles	1.0	1.35628
NCIH684	CCLE Cell Line Gene Expression Profiles	1.0	1.44843
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10144
OVISE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30122
NCIH854	CCLE Cell Line Gene CNV Profiles	-1.0	-3.00216
RCM1	CCLE Cell Line Gene Expression Profiles	-1.0	-2.29589
HCA-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.86147
PSN1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.83457
CTCF_GM12871_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-3170	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
CTCF_WERI-Rb-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.81624
SW1271	CCLE Cell Line Gene CNV Profiles	1.0	1.49203
RAD21_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-297	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
hsa-miR-567	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
RMUGS	CCLE Cell Line Gene CNV Profiles	1.0	2.18866
CTCF_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1806	CCLE Cell Line Gene CNV Profiles	-1.0	-1.86237
MIA PACA-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10261
KYSE270	CCLE Cell Line Gene Expression Profiles	1.0	1.50214
SNU1076	CCLE Cell Line Gene Expression Profiles	1.0	2.02819
HH	CCLE Cell Line Gene CNV Profiles	-1.0	-2.01571
hsa-miR-4478	TargetScan Predicted Conserved microRNA Targets	1.0	0.088999
hsa-miR-4529-3p	TargetScan Predicted Conserved microRNA Targets	1.0	0.90397
HS571T	CCLE Cell Line Gene Expression Profiles	-1.0	-1.67013
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03373
HMCB	CCLE Cell Line Gene Expression Profiles	-1.0	-2.52958
hsa-miR-4695-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
TOV21G	CCLE Cell Line Gene Expression Profiles	-1.0	-2.66065
PLC/PRF/5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.891234
hsa-miR-657	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
hsa-miR-4701-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.846466
CTCF_NB4_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
HCC1897	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51027
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15996
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.74167
hsa-miR-1321	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
H4K91ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
hsa-miR-766	TargetScan Predicted Conserved microRNA Targets	1.0	0.568687
hsa-miR-3913-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
HOP-92	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00393
KYSE520	CCLE Cell Line Gene Expression Profiles	1.0	1.42549
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27218
hsa-miR-1254	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
VMRCLCP	CCLE Cell Line Gene CNV Profiles	1.0	2.24109
CTCF_SK-N-SH_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HT144	CCLE Cell Line Gene Expression Profiles	1.0	1.41124
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39944
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49461
hsa-miR-615-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
H3K9me1_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
VCAP	CCLE Cell Line Gene CNV Profiles	1.0	1.67861
NCI-H2110	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.852182
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33373
HDAC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDAMB436	CCLE Cell Line Gene Expression Profiles	-1.0	-1.98073
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.961519
hsa-miR-198	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
hsa-miR-3173-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
SNU840	CCLE Cell Line Gene Expression Profiles	1.0	1.55215
CTCF_MCF-7_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of upper leg skin_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_epithelial cell of proximal tubule_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19629
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45258
hsa-miR-944	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
HSC2	CCLE Cell Line Gene Expression Profiles	1.0	1.39627
OUMS-23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03086
CTCF_GM19240_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KMS28BM	CCLE Cell Line Gene Expression Profiles	1.0	1.40202
CTCF_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-4764-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
hsa-miR-4756-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
COLO 794	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21939
H3K27me3_cardiac mesoderm_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MKN1	CCLE Cell Line Gene Expression Profiles	1.0	1.77767
NCIH2196	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34723
HCC1534	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.913813
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30122
DMS79	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44166
DMS153	CCLE Cell Line Gene CNV Profiles	-1.0	-1.79112
HS819T	CCLE Cell Line Gene Expression Profiles	1.0	1.67848
ZNF263_HEK293_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EZH2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_HL-60_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DM3	CCLE Cell Line Gene Expression Profiles	-1.0	-1.48426
MCF-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.919155
NCIH23	CCLE Cell Line Gene Expression Profiles	1.0	1.70505
CTCF_GM12875_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
624 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11903
hsa-miR-4766-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
hsa-miR-2053	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
SK-MEL-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.18214
IPC298	CCLE Cell Line Gene Expression Profiles	-1.0	-2.52593
hsa-miR-3929	TargetScan Predicted Conserved microRNA Targets	1.0	0.107229