association	dataset	threshold value	standardized value
NCIH1666	CCLE Cell Line Gene Expression Profiles	-1.0	-1.50476
MAFF	ENCODE Transcription Factor Targets	1.0	null
KPL1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.7737
PHF8	ENCODE Transcription Factor Targets	1.0	null
NCIH747	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42855
CTCF_GM10248_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BHLHE40	ENCODE Transcription Factor Targets	1.0	null
POLR2A_K562_hg19_8	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormality of the skin	GWASdb SNP-Phenotype Associations	1.0	0.125397
KURAMOCHI	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34331
HARA	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36618
SW 1990	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.996753
NCIH2291	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59432
OVISE	CCLE Cell Line Gene Expression Profiles	1.0	1.3718
NCIH1623	CCLE Cell Line Gene Expression Profiles	1.0	2.03223
HEC1A	CCLE Cell Line Gene Expression Profiles	-1.0	-1.5598
STAT3	ENCODE Transcription Factor Targets	1.0	null
T84	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02649
POLR2A_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_fibroblast of mammary gland_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
OVCAR4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48082
RCOR1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Type 1 diabetes mellitus_T lymphocyte_GSE10586	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.85598
HCFC1	ENCODE Transcription Factor Targets	1.0	null
HSC3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33975
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.924476
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14829
MAX_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH1385	CCLE Cell Line Gene CNV Profiles	1.0	1.47989
HEC-1	GDSC Cell Line Gene Expression Profiles	1.0	1.61233
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.924476
ESRRA_01_280	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	1.60565
RBBP5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KP-4	GDSC Cell Line Gene Expression Profiles	-1.0	-1.55151
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.926883
H3K4me3_K562_hg19_4	ENCODE Histone Modification Site Profiles	1.0	null
CAL78	CCLE Cell Line Gene CNV Profiles	-1.0	-2.09288
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.924476
RBM14_02_03	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.63743
POLR2AphosphoS2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
G124	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.882399
OCILY3	CCLE Cell Line Gene CNV Profiles	1.0	2.0172
YY1_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
SNU81	CCLE Cell Line Gene Expression Profiles	-1.0	-1.55088
SK-CO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62789
JIMT-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.996753
MAX	ENCODE Transcription Factor Targets	1.0	null
MAFF_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDA-MB-330	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.32901
nervous system disease	GWASdb SNP-Disease Associations	1.0	0.064419
H2AFZ_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-OV-3	GDSC Cell Line Gene Expression Profiles	1.0	1.56238
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52552
NCI-H1395	GDSC Cell Line Gene Expression Profiles	1.0	2.5082
corneal disease	GWASdb SNP-Disease Associations	1.0	1.04872
phenotypic abnormality	GWASdb SNP-Phenotype Associations	1.0	0.457025
VM-CUB-1	GDSC Cell Line Gene Expression Profiles	1.0	1.54449
BEN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33052
eGFP-JUND_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MXI1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
eye and adnexa disease	GWASdb SNP-Disease Associations	1.0	0.146021
HOP-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05638
C170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.73063
KYSE-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04818
A1207	CCLE Cell Line Gene Expression Profiles	-1.0	-2.76087
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
A549	GDSC Cell Line Gene Expression Profiles	1.0	1.64048
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14829
TAF1_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormality of the urinary system	GWASdb SNP-Phenotype Associations	1.0	1.15352
PA-TU-8902	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.926883
UMC-11	GDSC Cell Line Gene Expression Profiles	1.0	2.47461
IRF1	ENCODE Transcription Factor Targets	1.0	null
LN443	CCLE Cell Line Gene Expression Profiles	-1.0	-1.68585
abnormal eye morphology	GWASdb SNP-Phenotype Associations	1.0	0.144518
SHP-77	GDSC Cell Line Gene Expression Profiles	1.0	2.08285
SNU-601	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.926883
POLR2A_A549_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H2141	GDSC Cell Line Gene Expression Profiles	1.0	1.47762
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.924476
CL14	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64063
SW1353	CCLE Cell Line Gene Expression Profiles	-1.0	-3.19046
NCIH1693	CCLE Cell Line Gene Expression Profiles	1.0	1.55922
BHY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11136
HCC1395	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41235
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09385
CEBPB_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_K562_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KMM1	CCLE Cell Line Gene Expression Profiles	1.0	1.35979
SW 900	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.912618
59M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.939737
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.924476
H3K4me1_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
psoriasis	GWASdb SNP-Phenotype Associations	1.0	0.846368
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.870044
ONCODG1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34818
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
c-MYC_KD_GDS2526_112_human_MCF-7 BREAST CANCER cell line	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
HCC1143	CCLE Cell Line Gene CNV Profiles	1.0	1.48041
A-Netherlands-602-2009(H1N1)_3Hour_None_GSE40844	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.24003
NCIH211	CCLE Cell Line Gene CNV Profiles	1.0	1.38585
JUND	ENCODE Transcription Factor Targets	1.0	null
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
STAT3_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TMD8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.73189
OVCAR-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.825902
COR-L279	GDSC Cell Line Gene Expression Profiles	1.0	1.53326
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
YY1_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NUGC-3	GDSC Cell Line Gene Expression Profiles	-1.0	-1.44695
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14829
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20558
MAFK	ENCODE Transcription Factor Targets	1.0	null
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14404
RERF-LC-MS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30298
YY1_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BACH1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1569	CCLE Cell Line Gene CNV Profiles	1.0	1.85834
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14829
GTF2F1	ENCODE Transcription Factor Targets	1.0	null
DJM-1	GDSC Cell Line Gene Expression Profiles	-1.0	-1.74242
C-33 A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.985253
POLR2A_A549_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH510	CCLE Cell Line Gene CNV Profiles	1.0	1.83351
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.912506
H3K4me2_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ELF1	ENCODE Transcription Factor Targets	1.0	null
lytic vacuole	LOCATE Predicted Protein Localization Annotations	1.0	null
Primary T cells from cord blood	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-1.52874
FOXM1_01_77	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.63558
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.870044
SKCO1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.93174
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45828
SLR25	CCLE Cell Line Gene Expression Profiles	-1.0	-1.82634
IGR-37	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.870899
GB1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.70682
EP300	ENCODE Transcription Factor Targets	1.0	null
abnormality of the anterior segment of the eye	GWASdb SNP-Phenotype Associations	1.0	0.229932
T47D	GDSC Cell Line Gene Expression Profiles	1.0	1.43185
H3K4me3_fibroblast of villous mesenchyme_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
MAZ	ENCODE Transcription Factor Targets	1.0	null
integumentary system disease	GWASdb SNP-Disease Associations	1.0	0.163609
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07905
OCIMY7	CCLE Cell Line Gene CNV Profiles	1.0	1.46911
H-EMC-SS	GDSC Cell Line Gene Expression Profiles	-1.0	-1.79726
psoriasis	GWASdb SNP-Disease Associations	1.0	0.960778
TAF1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
generalized abnormality of skin	GWASdb SNP-Phenotype Associations	1.0	0.161608
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.963133
TAF1	ENCODE Transcription Factor Targets	1.0	null
POLR2A_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EHEB	GDSC Cell Line Gene Expression Profiles	1.0	1.66878
GRANTA-519	COSMIC Cell Line Gene CNV Profiles	1.0	2.12225
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22828
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.37644
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09298
HDAC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
IRF1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1703	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07096
VMCUB1	CCLE Cell Line Gene Expression Profiles	1.0	1.90054
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37882
POLR2A_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03986
ECGI10	CCLE Cell Line Gene Expression Profiles	1.0	1.53331
abnormality of the genitourinary system	GWASdb SNP-Phenotype Associations	1.0	0.08874
JHH6	CCLE Cell Line Gene Expression Profiles	-1.0	-1.6289
H3K4me3_A549_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
CUX1	ENCODE Transcription Factor Targets	1.0	null
ARID3A	ENCODE Transcription Factor Targets	1.0	null
MYC_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DMS53	CCLE Cell Line Gene CNV Profiles	1.0	1.70258
HCC1359	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59082
HUH28	CCLE Cell Line Gene Expression Profiles	1.0	1.39798
ASPC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.885565
MFE-296	GDSC Cell Line Gene Expression Profiles	-1.0	-1.83222
EBC1	CCLE Cell Line Gene CNV Profiles	1.0	2.3553
SJSA1	CCLE Cell Line Gene Expression Profiles	-1.0	-2.22876
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55317
NCO2	CCLE Cell Line Gene CNV Profiles	1.0	1.52135
KYSE-70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07905
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.039
HCFC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH209	CCLE Cell Line Gene Expression Profiles	1.0	1.78998
abnormality of skin physiology	GWASdb SNP-Phenotype Associations	1.0	0.292078
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
NCI-H510A	COSMIC Cell Line Gene CNV Profiles	1.0	2.12225
HL-60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.73063
H3K9me3_fibroblast of lung_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.3567
POLR2A	ENCODE Transcription Factor Targets	1.0	null
disease	GWASdb SNP-Disease Associations	1.0	0.035727
H3K4me3_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.48839
IMR-5	GDSC Cell Line Gene Expression Profiles	-1.0	-2.02136
ZNF143	ENCODE Transcription Factor Targets	1.0	null
abnormality of the eye	GWASdb SNP-Phenotype Associations	1.0	0.107569
SKM-1	GDSC Cell Line Gene Expression Profiles	-1.0	-1.64286
ZNF384_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RKO	GDSC Cell Line Gene Expression Profiles	-1.0	-1.58186
HCC2270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07905
NCI-H1963	COSMIC Cell Line Gene CNV Profiles	1.0	2.12225
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
BT-20	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.912506
YY1_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CEBPB	ENCODE Transcription Factor Targets	1.0	null
POLR2A_K562_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAX_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SAP30_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2AFZ_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02649
BCPAP	CCLE Cell Line Gene Expression Profiles	1.0	1.58189
NCI-H1568	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.912076
OELE	CCLE Cell Line Gene Expression Profiles	-1.0	-1.81963
Papillary Carcinoma of the Thyroid_Thyroid Gland (MMHCC)_GSE3467	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.45586
abnormality of the cornea	GWASdb SNP-Phenotype Associations	1.0	0.919947
SNU216	CCLE Cell Line Gene Expression Profiles	1.0	1.61524
ARID3A_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KMS-26	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.54735
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.923639
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
RBBP5	ENCODE Transcription Factor Targets	1.0	null
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
YY1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RCOR1	ENCODE Transcription Factor Targets	1.0	null
POLR2A_A549_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OUMS23	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.859325
TBL1XR1	ENCODE Transcription Factor Targets	1.0	null
OVCAR-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.938871
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.93549
KMS-21BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21506
EP300_GM12878_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH69	CCLE Cell Line Gene CNV Profiles	1.0	1.7874
HUH-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14352
POLR2A_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9ac_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.97691
PA-TU-8988T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26317
ASPC1	CCLE Cell Line Gene Expression Profiles	1.0	1.56778
MAZ_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH524	CCLE Cell Line Gene Expression Profiles	-1.0	-1.6956
GRANTA-519	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
KNS-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.912076
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
KDM5B_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14829
DU-145	GDSC Cell Line Gene Expression Profiles	1.0	1.72919
NCI-H2110	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02649
CAL-85-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.967608
MDA-MB-435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.967142
CTCF_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.31311
HCC1171	CCLE Cell Line Gene Expression Profiles	-1.0	-1.83852
UOK101	CCLE Cell Line Gene Expression Profiles	-1.0	-1.666
ZNF384	ENCODE Transcription Factor Targets	1.0	null
NCI-H2126	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56121
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
eye disease	GWASdb SNP-Disease Associations	1.0	0.146021
GTF2F1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SHP77	CCLE Cell Line Gene Expression Profiles	1.0	3.32971
DEL	CCLE Cell Line Gene Expression Profiles	1.0	2.22429
disease of anatomical entity	GWASdb SNP-Disease Associations	1.0	0.047274
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.924476
H3K4me3_K562_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
UBTF	ENCODE Transcription Factor Targets	1.0	null
lysosome	LOCATE Predicted Protein Localization Annotations	1.0	null
skin disease	GWASdb SNP-Disease Associations	1.0	0.197799
TWIST1_01_252	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.60662
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1607
H3K9me3_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SW 480	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.926883
TBP	ENCODE Transcription Factor Targets	1.0	null
POLR2A_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.26805
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.885565
COR-L47	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.89351
COLO668	CCLE Cell Line Gene CNV Profiles	1.0	1.5831
TBL1XR1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NUDHL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.83746
YY1_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HuCCT1	GDSC Cell Line Gene Expression Profiles	-1.0	-1.73377
H3K4me2_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H2122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.967142
CTCF_A549_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KYSE30	CCLE Cell Line Gene Expression Profiles	1.0	1.67888
JUND_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RFX5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.923639
CUX1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KDM5B	ENCODE Transcription Factor Targets	1.0	null
GRANTA519	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
H2AFZ_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OVMANA	CCLE Cell Line Gene Expression Profiles	1.0	2.63706
vacuole	LOCATE Predicted Protein Localization Annotations	1.0	null
urinary system disease	GWASdb SNP-Disease Associations	1.0	0.273092
NCIH146	CCLE Cell Line Gene CNV Profiles	1.0	1.8022
HCC1599	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20312
BC-3	GDSC Cell Line Gene Expression Profiles	1.0	1.70876
KMS26	CCLE Cell Line Gene CNV Profiles	1.0	1.54376
HDAC1	ENCODE Transcription Factor Targets	1.0	null
HCC1937	CCLE Cell Line Gene CNV Profiles	-1.0	-1.79096
DFCI024	CCLE Cell Line Gene Expression Profiles	1.0	1.77097
COLO677	CCLE Cell Line Gene Expression Profiles	1.0	1.40161
NCIH1963	CCLE Cell Line Gene CNV Profiles	1.0	2.59962
KARPAS620	CCLE Cell Line Gene Expression Profiles	1.0	1.83889
POLR2A_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_fibroblast of mammary gland_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
cytoplasmic part	LOCATE Predicted Protein Localization Annotations	1.0	null
LS123	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44139
ELF1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BHLHE40_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KLE	CCLE Cell Line Gene CNV Profiles	1.0	1.35933
MXI1	ENCODE Transcription Factor Targets	1.0	null
NCI-H82	GDSC Cell Line Gene Expression Profiles	-1.0	-1.61974
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.48839
OUMS-23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11136
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02602
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37882
TAF1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MYC_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RFX5	ENCODE Transcription Factor Targets	1.0	null
BACH1	ENCODE Transcription Factor Targets	1.0	null
PHF8_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PANC 04.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.996753
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31174
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
abnormality of the integument	GWASdb SNP-Phenotype Associations	1.0	0.102305
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30915
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.926883
eGFP-GATA2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SU8686	CCLE Cell Line Gene CNV Profiles	-1.0	-2.35145
MYC	ENCODE Transcription Factor Targets	1.0	null
COV644	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02649
ZNF143_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BGC823	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35142
SU.86.86	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30971
HS737T	CCLE Cell Line Gene Expression Profiles	-1.0	-1.75339
EP300_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
UBTF_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KU1919	CCLE Cell Line Gene Expression Profiles	1.0	1.4642
POLR2A_K562_hg19_9	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU213	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4855
NCIH2286	CCLE Cell Line Gene Expression Profiles	1.0	1.66781
KMS27	CCLE Cell Line Gene Expression Profiles	1.0	2.41647
ISHIKAWAHERAKLIO02ER	CCLE Cell Line Gene Expression Profiles	1.0	1.99329
POLR2A_K562_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25315
SNU308	CCLE Cell Line Gene Expression Profiles	1.0	1.42052
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.870044
H2AFZ_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.72821
H3K4me3_fibroblast of villous mesenchyme_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
MKN7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.72963
IRF1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
UMRC6	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81696
DMS-53	COSMIC Cell Line Gene CNV Profiles	1.0	2.12225
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
JHOC5	CCLE Cell Line Gene Expression Profiles	1.0	1.46283
HCC60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07096
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28313
HIF-2alpha_DEPLETION_GDS2760_643_human_Hypoxic MCF-7 breast cancer cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
NCIH209	CCLE Cell Line Gene CNV Profiles	1.0	1.43477
MFM-223	GDSC Cell Line Gene Expression Profiles	-1.0	-1.55357
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.859733
BFTC-905	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02602
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.92011
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22828
EW-22	GDSC Cell Line Gene Expression Profiles	-1.0	-2.76918
KP2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61431
K562	CCLE Cell Line Gene Expression Profiles	1.0	2.14302
HL60	CCLE Cell Line Gene CNV Profiles	1.0	1.3961
DMS454	CCLE Cell Line Gene CNV Profiles	1.0	1.40711
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56121
PANC 08.13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.912506
U178	CCLE Cell Line Gene Expression Profiles	-1.0	-1.9356
abnormality of the globe	GWASdb SNP-Phenotype Associations	1.0	0.144518
CORL95	CCLE Cell Line Gene CNV Profiles	1.0	1.88077
POLR2AphosphoS5_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.926883
all	GWASdb SNP-Phenotype Associations	1.0	0.037053
RMGI	CCLE Cell Line Gene Expression Profiles	1.0	1.56864
KYSE-450	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.82744
sensory system disease	GWASdb SNP-Disease Associations	1.0	0.121274
SW 527	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.825902
TBP_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAX_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SW837	CCLE Cell Line Gene Expression Profiles	-1.0	-1.50794
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
SAP30	ENCODE Transcription Factor Targets	1.0	null
MAFK_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OCIMY5	CCLE Cell Line Gene CNV Profiles	1.0	1.85049
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26262
MKN-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3444
RERF-GC-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.996753
ECGI10	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58232
H3K4me3_A549_hg19_4	ENCODE Histone Modification Site Profiles	1.0	null
DMS 53	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62337
YY1	ENCODE Transcription Factor Targets	1.0	null
Primary hematopoietic stem cells G-CSF-mobilized Female RO_01536	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-1.22543
inflammatory abnormality of the skin	GWASdb SNP-Phenotype Associations	1.0	0.292078
RH30	CCLE Cell Line Gene Expression Profiles	-1.0	-1.61093
H3K4me3_foreskin fibroblast_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
TAF1_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37937
JHOS4	CCLE Cell Line Gene CNV Profiles	1.0	2.16207
kidney disease	GWASdb SNP-Disease Associations	1.0	1.31635
BFTC-905	GDSC Cell Line Gene Expression Profiles	-1.0	-1.47902
MAX_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
J82	GDSC Cell Line Gene Expression Profiles	-1.0	-1.97401