association	dataset	threshold value	standardized value
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.21868
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00658
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37103
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20008
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.894449
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.98649
hsa-miR-3591-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.908298
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
hsa-miR-4282	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
hsa-miR-146a	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
hsa-miR-4684-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.858749
hsa-miR-1914	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16203
SUPT11	CCLE Cell Line Gene CNV Profiles	1.0	1.72422
MEWO	CCLE Cell Line Gene CNV Profiles	1.0	1.38834
CHP212	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33034
BXPC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839907
hsa-miR-1197	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
GBX2-23144817-PC3-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
HSC2	CCLE Cell Line Gene CNV Profiles	-1.0	-2.41361
YD8	CCLE Cell Line Gene CNV Profiles	-1.0	-1.98497
hsa-miR-1827	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16259
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52853
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	1.0	2.08212
KO52	CCLE Cell Line Gene CNV Profiles	1.0	1.40555
hsa-miR-944	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.96562
501A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839907
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00658
NMCG1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.4735
BT-483	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.5755
DAOY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34491
G122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.847614
SNU5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.90031
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.57625
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45392
NCIH209	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40109
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.959057
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20008
hsa-miR-557	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
SNU899	CCLE Cell Line Gene CNV Profiles	-1.0	-1.66935
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2905
HCC1599	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44452
hsa-miR-4705	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
hsa-miR-3116	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.858749
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.90334
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62108
hsa-miR-764	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
OVCAR4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61412
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78941
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43454
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.86641
HEC6	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
SCLC21H	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
IGR1	CCLE Cell Line Gene CNV Profiles	1.0	2.44998
HH	CCLE Cell Line Gene CNV Profiles	1.0	1.47161
IMR-32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.09332
hsa-miR-4421	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
C3A	CCLE Cell Line Gene CNV Profiles	1.0	1.90604
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.45215
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32992
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16126
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16358
hsa-miR-940	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
COV318	CCLE Cell Line Gene CNV Profiles	1.0	1.43393
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31055
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.959057
KMS-28BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37103
YAPC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06369
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.847614
CEBPA-26348894-LIVER-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.88452
Perturb_248_KD_TPRX1/TPRX2/TPRXL_SRP361145	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.49485
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10541
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.959057
NCI-H2795	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.73907
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26145
PA-TU-8988T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.847614
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16126
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40699
SBC5	CCLE Cell Line Gene CNV Profiles	1.0	1.75173
NAMALWA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66561
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.98649
hsa-miR-543	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05288
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.868339
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.959057
SCLC-22H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.02943
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10541
RAJI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17158
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21505
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62108
GRANTA-519	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68808
NCIH510	CCLE Cell Line Gene CNV Profiles	1.0	1.70763
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.847614
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00658
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.846867
hsa-miR-146b-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
hsa-miR-4313	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35252
U-698-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40951
hsa-miR-876-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
NAMALWA	CCLE Cell Line Gene CNV Profiles	1.0	1.42256
EBC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51927
hsa-miR-10b	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25119
hsa-miR-335-5p	MiRTarBase microRNA Targets	1.0	null
NUGC3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55232
hsa-miR-3657	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
NCOR-22424771-293T-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.90334
BCPAP	CCLE Cell Line Gene CNV Profiles	1.0	1.42029
TBL1-22424771-293T-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
hsa-miR-28-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
hsa-miR-3167	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
ONCODG1	CCLE Cell Line Gene CNV Profiles	1.0	1.50988
hsa-miR-511	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
hsa-miR-3925-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
CORL88	CCLE Cell Line Gene CNV Profiles	1.0	1.79481
HCC70	CCLE Cell Line Gene CNV Profiles	1.0	1.35299
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.959057
SNU423	CCLE Cell Line Gene CNV Profiles	-1.0	-1.83429
KMS28BM	CCLE Cell Line Gene CNV Profiles	1.0	1.61828
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22875
hsa-miR-1261	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00734
Sjogren'S Syndrome	DisGeNET Gene-Disease Associations	1.0	null
SNU1105	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4703
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.847614
KPNSI9S	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49447
OUMS23	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69975
C3A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04441
hsa-miR-4691-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
KYSE270	CCLE Cell Line Gene CNV Profiles	1.0	1.7766
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00734
hsa-miR-339-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
hsa-miR-302f	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
KURAMOCHI	CCLE Cell Line Gene CNV Profiles	1.0	1.40352
NB1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68014
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16126
SK-CO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35174
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0629
hsa-miR-4456	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
hsa-miR-3973	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
Perturb_247_KD_TPRX1_SRP361145	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.8659
hsa-miR-4762-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
hsa-miR-10a	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
KYSE180	CCLE Cell Line Gene CNV Profiles	-1.0	-1.85998
NCIH1385	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41298
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11259
OCUM1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57234
KLE	CCLE Cell Line Gene CNV Profiles	1.0	1.45133
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32632
COV318	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17158
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910379
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21079
MDAMB157	CCLE Cell Line Gene CNV Profiles	1.0	1.62303
hsa-miR-4311	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
PA-TU-8988S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11259
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839907
hsa-miR-4446-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28801
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.959057
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.847614
SUPHD1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34431
hsa-miR-3662	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32632
hsa-miR-1254	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Retroperitoneal Liposarcoma	DisGeNET Gene-Disease Associations	1.0	null
CHP-212	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.79152
hsa-miR-4649-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
hsa-miR-3934	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30211
hsa-miR-3646	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
COLO668	CCLE Cell Line Gene CNV Profiles	1.0	1.98323
hsa-miR-507	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
MOTN1	CCLE Cell Line Gene CNV Profiles	1.0	2.45307
TE9	CCLE Cell Line Gene CNV Profiles	-1.0	-2.19531
MEWO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.93032
hsa-miR-3907	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2116
hsa-miR-516a-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
SKMEL28	CCLE Cell Line Gene CNV Profiles	1.0	1.57863
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.908298
hsa-let-7e-5p	MiRTarBase microRNA Targets	1.0	null
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.96562
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35252
hsa-miR-3165	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09535
TE5	CCLE Cell Line Gene CNV Profiles	-1.0	-2.10036
LN319	CCLE Cell Line Gene CNV Profiles	1.0	2.07304
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
HEL9217	CCLE Cell Line Gene CNV Profiles	1.0	1.38044
SNU685	CCLE Cell Line Gene CNV Profiles	-1.0	-1.72581
hsa-miR-502-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.987452