association	dataset	threshold value	standardized value
exosome (rnase complex)	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.578416
H3K4me3_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
TCF7L2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.85152
lung	GeneRIF Biological Term Annotations	1.0	null
Carcinoma, Renal Cell	HuGE Navigator Gene-Phenotype Associations	1.0	null
lymphocytic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.09599
KHM-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.02943
skeletal muscle cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067996
H3K4me3_Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5521
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069872
prostate gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.520435
pulmonary artery endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.379123
FOSL1	ENCODE Transcription Factor Targets	1.0	null
laminin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.308867
lymphoblastic leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.082517
SK-MM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49353
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.566828
prostate cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.413532
Kidney Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
AM38	CCLE Cell Line Gene CNV Profiles	1.0	1.77334
esophageal cancer	GAD Gene-Disease Associations	1.0	null
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067088
SW837	CCLE Cell Line Gene CNV Profiles	1.0	1.38729
regulating	GeneRIF Biological Term Annotations	1.0	null
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.350001
RFX5	ENCODE Transcription Factor Targets	1.0	null
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060932
bmpr2	GeneRIF Biological Term Annotations	1.0	null
prostate gland cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.410111
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.652589
T47D	CCLE Cell Line Gene CNV Profiles	1.0	2.26874
20363096-Table3	GeneSigDB Published Gene Signatures	1.0	null
docetaxel	GeneRIF Biological Term Annotations	1.0	null
regulate	GeneRIF Biological Term Annotations	1.0	null
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3335
COLO 853	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.67463
antagonism	GeneRIF Biological Term Annotations	1.0	null
inhibition	GeneRIF Biological Term Annotations	1.0	null
SIN3A_PFSK-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.468819
KARPAS-422	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3782
CEBPB_IMR-90_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
decreased	GeneRIF Biological Term Annotations	1.0	null
convincing	GeneRIF Biological Term Annotations	1.0	null
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060679
clonogenicity	GeneRIF Biological Term Annotations	1.0	null
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062154
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058004
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060029
POLR2AphosphoS5_HCT116_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
esophageal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.157163
pancreatic cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.238406
NCIH929	CCLE Cell Line Gene CNV Profiles	1.0	1.87446
FOXP2-23625967-PFSK-1 AND SK-N-MC-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
midbody	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.433407
WM983B	CCLE Cell Line Gene CNV Profiles	-1.0	-2.41517
CACO2	CCLE Cell Line Gene CNV Profiles	1.0	1.36635
KE39	CCLE Cell Line Gene CNV Profiles	1.0	1.8109
H3K9ac_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mir199b	GeneRIF Biological Term Annotations	1.0	null
oral squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.323144
ovarian cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.465794
MDAMB134VI	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54421
serve	GeneRIF Biological Term Annotations	1.0	null
20448109-Table2	GeneSigDB Published Gene Signatures	1.0	null
Disease Progression	HuGE Navigator Gene-Phenotype Associations	1.0	null
CEBPB	ENCODE Transcription Factor Targets	1.0	null
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061114
chemoresistance	GeneRIF Biological Term Annotations	1.0	null
evidence	GeneRIF Biological Term Annotations	1.0	null
FOXA2_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hemocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.54217
mcf-7 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.231206
H3K27me3_liver_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOXP2	ChEA Transcription Factor Targets	1.0	null
POLR2AphosphoS5_PFSK-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27ac_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CA SKI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851971
part	GeneRIF Biological Term Annotations	1.0	null
laminin-5 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.422389
nonhomologous end joining complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.211933
extracellular vesicular exosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.578833
igf1	GeneRIF Biological Term Annotations	1.0	null
stress	GeneRIF Biological Term Annotations	1.0	null
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.084595
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.094478
19895320-Table1	GeneSigDB Published Gene Signatures	1.0	null
MCF-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12846
lead	GeneRIF Biological Term Annotations	1.0	null
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.2834
TP63-22573176-HFKS-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
GATA3_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.791044
distinguished	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_brain_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.588431
NCI-H2795	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25567
H3K27me3_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
polo	GeneRIF Biological Term Annotations	1.0	null
SKMM2	CCLE Cell Line Gene CNV Profiles	1.0	1.32847
hypoxia	GeneRIF Biological Term Annotations	1.0	null
adrenal cortex cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.194548
epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.503533
mitotic spindle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.232029
breast adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.419623
oral premalignant lesions	GAD Gene-Disease Associations	1.0	null
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068051
HDAC2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
rates	GeneRIF Biological Term Annotations	1.0	null
bone cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.092179
ME1	CCLE Cell Line Gene CNV Profiles	1.0	2.10689
demonstrated	GeneRIF Biological Term Annotations	1.0	null
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.418099
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851971
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.712549
higher	GeneRIF Biological Term Annotations	1.0	null
CAR-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24519
partly	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
proliferation	GeneRIF Biological Term Annotations	1.0	null
Uterine Cervical Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
SP1_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
childhood	GeneRIF Biological Term Annotations	1.0	null
strongly	GeneRIF Biological Term Annotations	1.0	null
endometrial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.171192
mirna	GeneRIF Biological Term Annotations	1.0	null
stomach	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.077055
20028859-TableS2	GeneSigDB Published Gene Signatures	1.0	null
fide	GeneRIF Biological Term Annotations	1.0	null
TCF12_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_fibroblast of mammary gland_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.881277
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04579
POLR2AphosphoS5_PFSK-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lymphoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070881
inhibit	GeneRIF Biological Term Annotations	1.0	null
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061102
TCF12_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.865159
e6e7	GeneRIF Biological Term Annotations	1.0	null
769-P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23004
negatively	GeneRIF Biological Term Annotations	1.0	null
MEWO	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38806
abnormal skin coloration	MGI Mouse Phenotype Associations 2023	1.0	null
igf2	GeneRIF Biological Term Annotations	1.0	null
follicular thyroid cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.527928
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.326798
effect	GeneRIF Biological Term Annotations	1.0	null
squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.544549
their	GeneRIF Biological Term Annotations	1.0	null
mir126	GeneRIF Biological Term Annotations	1.0	null
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.865159
EZH2	ENCODE Transcription Factor Targets	1.0	null
loss	GeneRIF Biological Term Annotations	1.0	null
Ovarian Neoplasms	CTD Gene-Disease Associations	1.0	1.01512
abomasum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.102188
20103675-Table1b	GeneSigDB Published Gene Signatures	1.0	null
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.489057
STAT3	MotifMap Predicted Transcription Factor Targets	1.0	null
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041784
vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058866
pulmonary artery smooth muscle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.324239
H3K27ac_limb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K27ac_Panc1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
osteosarcoma	GeneRIF Biological Term Annotations	1.0	null
graftversushost	GeneRIF Biological Term Annotations	1.0	null
vulvar	GeneRIF Biological Term Annotations	1.0	null
all	GeneRIF Biological Term Annotations	1.0	null
maker	GeneRIF Biological Term Annotations	1.0	null
extracellular region part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.065841
clinical	GeneRIF Biological Term Annotations	1.0	null
accompanied	GeneRIF Biological Term Annotations	1.0	null
eventually	GeneRIF Biological Term Annotations	1.0	null
KYSE-510	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09271
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40023
TCF7L2_Panc1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HDAC2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
wound	GeneRIF Biological Term Annotations	1.0	null
osteogenic	GeneRIF Biological Term Annotations	1.0	null
partially	GeneRIF Biological Term Annotations	1.0	null
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06202
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052428
CTCF_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GLI3T_Lipofectamine transfection_GDS4346_616_human_Panc-1 cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33475
adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.642858
vascular	GeneRIF Biological Term Annotations	1.0	null
BJAB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3349
basal lamina	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.160053
functions	GeneRIF Biological Term Annotations	1.0	null
NCI-H1623	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14947
TE4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53032
targeting	GeneRIF Biological Term Annotations	1.0	null
MAFK	ENCODE Transcription Factor Targets	1.0	null
thyroid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.141918
PPARD	ChEA Transcription Factor Targets	1.0	null
PXR (PXR:RXR)	MotifMap Predicted Transcription Factor Targets	1.0	null
TEAD4_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
survival	GeneRIF Biological Term Annotations	1.0	null
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.21392
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67329
bladder	GeneRIF Biological Term Annotations	1.0	null
bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.672506
phenotype	GeneRIF Biological Term Annotations	1.0	null
lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.082211
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.267102
leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059567
differentiation	GeneRIF Biological Term Annotations	1.0	null
mirnas	GeneRIF Biological Term Annotations	1.0	null
bona	GeneRIF Biological Term Annotations	1.0	null
NUDUL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52923
C2BBE1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01033
SNU886	CCLE Cell Line Gene CNV Profiles	-1.0	-1.75222
vulva cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.472982
contributes	GeneRIF Biological Term Annotations	1.0	null
5637 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.10048
act	GeneRIF Biological Term Annotations	1.0	null
extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.238119
Inflammation	CTD Gene-Disease Associations	1.0	1.19279
microrna100	GeneRIF Biological Term Annotations	1.0	null
EP300	ENCODE Transcription Factor Targets	1.0	null
YAPC	CCLE Cell Line Gene CNV Profiles	1.0	1.42115
REST	ENCODE Transcription Factor Targets	1.0	null
marginal zone b-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.269043
Carcinoma, Non-Small-Cell Lung	HuGE Navigator Gene-Phenotype Associations	1.0	null
myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048672
ovarian surface epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.602892
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.968081
fkbp51	GeneRIF Biological Term Annotations	1.0	null
igf1rmtor	GeneRIF Biological Term Annotations	1.0	null
KMS21BM	CCLE Cell Line Gene CNV Profiles	1.0	1.65635
pancreatic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.30342
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.17496
U266B1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29598
MDA-MB-134-VI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23004
PL18	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.24687
hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.237706
muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.081548
H3K4me3_A549_hg19_4	ENCODE Histone Modification Site Profiles	1.0	null
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02177
CAL 27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15205
facioscapulohumeral muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.377402
nci-h69 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.6721
female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.799923
KATOIII	CCLE Cell Line Gene CNV Profiles	1.0	1.64644
vincristine	GeneRIF Biological Term Annotations	1.0	null
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.790212
reported	GeneRIF Biological Term Annotations	1.0	null
rbsp3	GeneRIF Biological Term Annotations	1.0	null
overexpression	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5521
OCILY10	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52728
TCF7L2_HCT116_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
turn	GeneRIF Biological Term Annotations	1.0	null
panc-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.454512
H3K4me1_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
prostate cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.385936
thyroid adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.222136
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39855
SKNAS	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41963
muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047922
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.369258
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039217
HDAC2_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
eec	GeneRIF Biological Term Annotations	1.0	null
NCIH1105	CCLE Cell Line Gene CNV Profiles	1.0	1.81964
adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.415814
key	GeneRIF Biological Term Annotations	1.0	null
Precancerous Conditions	HuGE Navigator Gene-Phenotype Associations	1.0	null
rcc	GeneRIF Biological Term Annotations	1.0	null
H3K9ac_heart_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
DMS 454	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.939397
RDES	CCLE Cell Line Gene CNV Profiles	1.0	1.37322
SIN3A	ENCODE Transcription Factor Targets	1.0	null
viability	GeneRIF Biological Term Annotations	1.0	null
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05905
acute lymphoblastic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.222699
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.665588
suppresses	GeneRIF Biological Term Annotations	1.0	null
MAZ	ENCODE Transcription Factor Targets	1.0	null
like	GeneRIF Biological Term Annotations	1.0	null
skeletal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069332
leukemia	GeneRIF Biological Term Annotations	1.0	null
abnormal coat/hair pigmentation	IMPC Knockout Mouse Phenotypes	1.0	null
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.983447
KYSE450	CCLE Cell Line Gene CNV Profiles	-1.0	-2.17259
H3K36me3_heart_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
reduction	GeneRIF Biological Term Annotations	1.0	null
PANC 08.13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.90429
H3K4me3_fibroblast of mammary gland_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
adenocarcinoma	GeneRIF Biological Term Annotations	1.0	null
squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.685491
three	GeneRIF Biological Term Annotations	1.0	null
pathological	GeneRIF Biological Term Annotations	1.0	null
progressive	GeneRIF Biological Term Annotations	1.0	null
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.084003
C2BBE1	CCLE Cell Line Gene CNV Profiles	1.0	1.33533
list	GeneRIF Biological Term Annotations	1.0	null
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910804
Breast Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
HT	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17622
ERG-20517297-VCAP-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
ovarian surface epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.484376
sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06907
without	GeneRIF Biological Term Annotations	1.0	null
dermal	GeneRIF Biological Term Annotations	1.0	null
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.983447
urinary bladder cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.652089
urinary bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.176217
A-673	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.38828
heart	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059339
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.07992
SK-N-AS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29727
PPARG	ChEA Transcription Factor Targets	1.0	null
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041277
chondrosarcoma	GeneRIF Biological Term Annotations	1.0	null
TAF1	ENCODE Transcription Factor Targets	1.0	null
indicated	GeneRIF Biological Term Annotations	1.0	null
POLR2A_embryonic fibroblast_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
paralleled	GeneRIF Biological Term Annotations	1.0	null
abnormal skin coloration	IMPC Knockout Mouse Phenotypes	1.0	null
MAFK_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SP1_HCT116_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042202
MAX_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.03653
transition	GeneRIF Biological Term Annotations	1.0	null
19924232-TableS3	GeneSigDB Published Gene Signatures	1.0	null
pc-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.266069
acute lymphoblastic leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.087921
add	GeneRIF Biological Term Annotations	1.0	null
thorax	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.434906
EHMT2_KD_GDS4800_315_human_MDA-MB231	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
kinase	GeneRIF Biological Term Annotations	1.0	null
BCL3_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SKMEL2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36994
invasion	GeneRIF Biological Term Annotations	1.0	null
subtypes	GeneRIF Biological Term Annotations	1.0	null
lymphocytic leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.077032
adrenal gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.160021
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.85152
prostate	GeneRIF Biological Term Annotations	1.0	null
Stomach Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
EB-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19877
musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.04167
Hyperplasia	CTD Gene-Disease Associations	1.0	1.19999
pharyngeal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.828197
downregulates	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mir99	GeneRIF Biological Term Annotations	1.0	null
line	GeneRIF Biological Term Annotations	1.0	null
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.87425
CMLT1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39414
POLR2AphosphoS5_Panc1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CEBPB_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOXA1_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TP53-23651856-MEF-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_fibroblast of gingiva_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
independently	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_Mobilized CD34 Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
epithelialmesenchymal	GeneRIF Biological Term Annotations	1.0	null
smarca5	GeneRIF Biological Term Annotations	1.0	null
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.939397
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.218186
ovarian	GeneRIF Biological Term Annotations	1.0	null
underexpressed	GeneRIF Biological Term Annotations	1.0	null
uterine cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.119804
uterus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080191
coregulate	GeneRIF Biological Term Annotations	1.0	null
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
strong	GeneRIF Biological Term Annotations	1.0	null
NCIH2073	CCLE Cell Line Gene CNV Profiles	-1.0	-1.95131
NCI-H2171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.940572
chemotherapy	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0328
JL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3335
H4K20me1_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
JUND	ENCODE Transcription Factor Targets	1.0	null
rad001	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_Panc1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
chondrosarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.493745
HEL	CCLE Cell Line Gene CNV Profiles	1.0	2.10879
urinary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.520346
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.941053
ecadherin	GeneRIF Biological Term Annotations	1.0	null
TCF7L2_HEK293_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
endocrine organ benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.089537
pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.132544
H3K4me3_Panc1_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.852057
SUDHL5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3912
musculoskeletal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.04265
mimics	GeneRIF Biological Term Annotations	1.0	null
ARID3A	ENCODE Transcription Factor Targets	1.0	null
crucial	GeneRIF Biological Term Annotations	1.0	null
thyroid cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.139765
REST_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00001
TK-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.59685
EP300_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.092744
candidate	GeneRIF Biological Term Annotations	1.0	null
NCIH1573	CCLE Cell Line Gene CNV Profiles	1.0	1.74392
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.355198
explored	GeneRIF Biological Term Annotations	1.0	null
cdh1	GeneRIF Biological Term Annotations	1.0	null
ovary cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06666
SP1_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
psa	GeneRIF Biological Term Annotations	1.0	null
pathogenesis	GeneRIF Biological Term Annotations	1.0	null
FOXA2_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nuclear part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041821
adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.379626
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046279
FOSL2_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
urinary bladder cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.690451
H2AFZ_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
extracellular vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.578833
POLR2AphosphoS5_HCT116_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K79me2_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
revealed	GeneRIF Biological Term Annotations	1.0	null
Carcinoma, Squamous Cell	HuGE Navigator Gene-Phenotype Associations	1.0	null
LOXL2_DEPLETION_GDS4884_88_human_MDA-MB-231 cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.790212
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.865159
breast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.494528
hoxa1mediated	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of lung_hg19_6	ENCODE Histone Modification Site Profiles	1.0	null
TYK-NU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.65158
ftc-133 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.604099
shorter	GeneRIF Biological Term Annotations	1.0	null
HCC78	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09515
HCC2157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0328
immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.23353
H3K36me3_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDA-MB-468	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06333
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.775664
cellular	GeneRIF Biological Term Annotations	1.0	null
root nodule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.320227
alteration	GeneRIF Biological Term Annotations	1.0	null
migration	GeneRIF Biological Term Annotations	1.0	null
KARPAS422	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34239
HCC364	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90619
LOXL2_KD_GSE35600_688_human_MDA-MB-231 cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
bone cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.396844
presence	GeneRIF Biological Term Annotations	1.0	null
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.314839
COLO678	CCLE Cell Line Gene CNV Profiles	1.0	1.49495
adrenocortical carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.227988
healing	GeneRIF Biological Term Annotations	1.0	null
feature	GeneRIF Biological Term Annotations	1.0	null
root	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069743
internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.450271
SOX4	MotifMap Predicted Transcription Factor Targets	1.0	null
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.865159
acute	GeneRIF Biological Term Annotations	1.0	null
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02062
15284443-Table6	GeneSigDB Published Gene Signatures	1.0	null
H3K4me1_brain_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.346777
OVSAHO	CCLE Cell Line Gene CNV Profiles	-1.0	-2.14744
skeletal muscle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067034
mir125b	GeneRIF Biological Term Annotations	1.0	null
dna repair complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.075192
regulator	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_heart_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
movement	GeneRIF Biological Term Annotations	1.0	null
breast	GeneRIF Biological Term Annotations	1.0	null
TP63	ChEA Transcription Factor Targets	1.0	null
H3K27ac_cerebellum_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
epithelial	GeneRIF Biological Term Annotations	1.0	null
NCI-H2228	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.852057
gastric juice	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.272649
correlated	GeneRIF Biological Term Annotations	1.0	null
conditions	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_heart_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
endometrioid	GeneRIF Biological Term Annotations	1.0	null
clear	GeneRIF Biological Term Annotations	1.0	null
male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.522405
suppression	GeneRIF Biological Term Annotations	1.0	null
EZH2_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	1.22948
NCIH2110	CCLE Cell Line Gene CNV Profiles	-1.0	-1.77489
critical	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_Adipose Derived Mesenchymal Stem Cell Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
altering	GeneRIF Biological Term Annotations	1.0	null
KYSE-450	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.72386
TMD8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25567
malignant ovarian surface epithelial-stromal neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.398589
POLR2A_HGPS cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
splenic marginal zone lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.438658
hepatocellular	GeneRIF Biological Term Annotations	1.0	null
hoxa1	GeneRIF Biological Term Annotations	1.0	null
COLO 857	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.6275
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06333
progressionfree	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_HCT116_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
extracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.133146
lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.331391
adult liver stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.359292
cancerrelevant	GeneRIF Biological Term Annotations	1.0	null
small cell lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.242363
carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.931242
H3K36me3_BJ_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
blood cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059676
myeloid leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.106314
PPARD-23208498-MDA-MB-231-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
cervical	GeneRIF Biological Term Annotations	1.0	null
mtor	GeneRIF Biological Term Annotations	1.0	null
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.6754
non-hodgkin lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.102492
downregulation	GeneRIF Biological Term Annotations	1.0	null
epithelial ovarian cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.40025
esophageal squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.761155
pancreatic adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.431077
abnormal coat/hair pigmentation	MGI Mouse Phenotype Associations 2023	1.0	null
Adenocarcinoma	HuGE Navigator Gene-Phenotype Associations	1.0	null
prostate gland cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.237216
mir99b	GeneRIF Biological Term Annotations	1.0	null
NCIH650	CCLE Cell Line Gene CNV Profiles	1.0	1.56558
artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069725
enhances	GeneRIF Biological Term Annotations	1.0	null
differentially	GeneRIF Biological Term Annotations	1.0	null
OVTOKO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910804
osteosarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.406315
RL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.94294
mesenchymal cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.219057
ovary epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.483986
vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.056648
reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.849945
H3K36me3_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
significant	GeneRIF Biological Term Annotations	1.0	null
independent	GeneRIF Biological Term Annotations	1.0	null
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.941053
negative	GeneRIF Biological Term Annotations	1.0	null
OCIMY7	CCLE Cell Line Gene CNV Profiles	1.0	1.37955
mg-63 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.448346
H3K4me1_Panc1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PANC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24519
miapaca-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.21365
ERG	ChEA Transcription Factor Targets	1.0	null
contribute	GeneRIF Biological Term Annotations	1.0	null
head muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.174635
lymphoblastic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.221755
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.90635
detected	GeneRIF Biological Term Annotations	1.0	null
inhibitory	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_G1E-ER4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
thyroid cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.225647
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055991
NCIH1694	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70503
CHP126	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69692
kle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.853368
drug	GeneRIF Biological Term Annotations	1.0	null
overall	GeneRIF Biological Term Annotations	1.0	null
MAX	ENCODE Transcription Factor Targets	1.0	null
miRNAs involved in DNA damage response(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
TCF12	ENCODE Transcription Factor Targets	1.0	null
acts	GeneRIF Biological Term Annotations	1.0	null
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.830834
H3K27ac_heart_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
SUPHD1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69455
H3K9ac_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
EP300_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
esophageal	GeneRIF Biological Term Annotations	1.0	null
mir192	GeneRIF Biological Term Annotations	1.0	null
promoter	GeneRIF Biological Term Annotations	1.0	null
MAZ_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
sclc	GeneRIF Biological Term Annotations	1.0	null
leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.343473
SP1	ENCODE Transcription Factor Targets	1.0	null
H3K4me3_fibroblast of pedal digit skin_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H727	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31936
lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.088648
WM88	CCLE Cell Line Gene CNV Profiles	-1.0	-2.74762
H3K4me1_cortical plate_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
deregulation	GeneRIF Biological Term Annotations	1.0	null
FOSL1_HCT116_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
metatstatic	GeneRIF Biological Term Annotations	1.0	null
AP-2rep	MotifMap Predicted Transcription Factor Targets	1.0	null
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056386
SU-DHL-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29598
FOXA1	ENCODE Transcription Factor Targets	1.0	null
associates	GeneRIF Biological Term Annotations	1.0	null
lung cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067886
smarcd1	GeneRIF Biological Term Annotations	1.0	null
TEAD4	ENCODE Transcription Factor Targets	1.0	null
CACO-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.922181
oral cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.470375
spindle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.132657
H3K4me3_A549_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
SK-MEL-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.42147
H3K4me1_brown adipose tissue_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K27ac_kidney_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
BCL3	ENCODE Transcription Factor Targets	1.0	null
possible	GeneRIF Biological Term Annotations	1.0	null
ovary	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.092276
SJSA1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34218
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.968081
suppressor	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_olfactory bulb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_kidney epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
Neoplasm Metastasis	HuGE Navigator Gene-Phenotype Associations	1.0	null
muscle tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048409
poor	GeneRIF Biological Term Annotations	1.0	null
NCIH526	CCLE Cell Line Gene CNV Profiles	1.0	2.48549
COLO 792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09271
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.082619
SNU761	CCLE Cell Line Gene CNV Profiles	-1.0	-2.27004
A204	CCLE Cell Line Gene CNV Profiles	1.0	1.35866
endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06189
family	GeneRIF Biological Term Annotations	1.0	null
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.81565
squamous epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.087922
TCF7L2	ENCODE Transcription Factor Targets	1.0	null
FOSL2	ENCODE Transcription Factor Targets	1.0	null
Neoplasm Metastasis	CTD Gene-Disease Associations	1.0	2.88009
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
TP53	ChEA Transcription Factor Targets	1.0	null
sensitivity	GeneRIF Biological Term Annotations	1.0	null
RUNX2	ChEA Transcription Factor Targets	1.0	null
nasopharyngeal	GeneRIF Biological Term Annotations	1.0	null
small cell lung cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.41087
PATU8902	CCLE Cell Line Gene CNV Profiles	1.0	1.33944
cervix carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.172291
SP1_HCT116_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cervical cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.583552
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21562
lymphoblastoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073082
19895320-Table2	GeneSigDB Published Gene Signatures	1.0	null
vivo	GeneRIF Biological Term Annotations	1.0	null
tissues	GeneRIF Biological Term Annotations	1.0	null
reh cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.585625
HT	CCLE Cell Line Gene CNV Profiles	-1.0	-1.72701
uterine endometrium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.129028
squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.094363
H3K4me3_fibroblast of lung_hg19_7	ENCODE Histone Modification Site Profiles	1.0	null
methylation	GeneRIF Biological Term Annotations	1.0	null
regulated	GeneRIF Biological Term Annotations	1.0	null
mir429	GeneRIF Biological Term Annotations	1.0	null
heart valve	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.280717
unfavorable	GeneRIF Biological Term Annotations	1.0	null
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042903
uterine cervix	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075115
bronchogenic carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.312232
therapeutic	GeneRIF Biological Term Annotations	1.0	null
hrhpv	GeneRIF Biological Term Annotations	1.0	null
stem	GeneRIF Biological Term Annotations	1.0	null
HDAC2	ENCODE Transcription Factor Targets	1.0	null
repression	GeneRIF Biological Term Annotations	1.0	null
pulmonary artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.177771
MCF7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45994
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058987
RFX5_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CAPAN2	CCLE Cell Line Gene CNV Profiles	1.0	1.41424
non-small cell lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.257358
extracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.578833
ribonucleoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046391
gastric gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.176062
therefore	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
blood vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060691
H3K27ac_embryonic fibroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
signalling	GeneRIF Biological Term Annotations	1.0	null
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02177
H3K4me3_fibroblast of pedal digit skin_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06202
reduced	GeneRIF Biological Term Annotations	1.0	null
thyroid nodule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.266413
Colorectal Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
Neoplasm Recurrence, Local	HuGE Navigator Gene-Phenotype Associations	1.0	null
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02177
colorectal	GeneRIF Biological Term Annotations	1.0	null
head and neck squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.468824
low	GeneRIF Biological Term Annotations	1.0	null
esophageal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.192031
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06333
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02389
offer	GeneRIF Biological Term Annotations	1.0	null
vulva carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.531541
under	GeneRIF Biological Term Annotations	1.0	null
carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.505102
H3K27ac_cortical plate_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
myeloid	GeneRIF Biological Term Annotations	1.0	null
FOXA1_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hematopoietic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057937
NCI-H2110	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.11645
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.94403
extracellular matrix part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.075966
H4K20me1_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.31464
NU-DUL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25567
Esophageal Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
du-145 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.340757
maintaining	GeneRIF Biological Term Annotations	1.0	null
esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.141482
CTCF_HepG2_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
directly	GeneRIF Biological Term Annotations	1.0	null
thyroid gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.131027
endometrial	GeneRIF Biological Term Annotations	1.0	null
ML-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3349
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053028
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.65158
FOXA2	ENCODE Transcription Factor Targets	1.0	null
H3K4me1_lung_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.328994
H3K4me3_Panc1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PPARG-20887899-3T3-L1 PREADIPOCYTE CELLS-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
prostate carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.230409
TAF1_PFSK-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
direct	GeneRIF Biological Term Annotations	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.03127
prognosis	GeneRIF Biological Term Annotations	1.0	null
suggests	GeneRIF Biological Term Annotations	1.0	null
NCI-H1915	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40023
esophageal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.657054
SOX10	MotifMap Predicted Transcription Factor Targets	1.0	null
including	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.874468
H3K4me2_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
participates	GeneRIF Biological Term Annotations	1.0	null
squamous	GeneRIF Biological Term Annotations	1.0	null
carcinoma, renal cell; kidney neoplasms; neoplasm recurrence, local; renal cell carcinoma	GAD Gene-Disease Associations	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.86844
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.581218
male reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.378885
fgfr3	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_bone marrow macrophage_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
E2F4_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
vitro	GeneRIF Biological Term Annotations	1.0	null
lymphoblastic leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.231795
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09271
pancreas adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.446558
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
TEAD4_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Lung Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
organ system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043704
gastric	GeneRIF Biological Term Annotations	1.0	null
gastric cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.333028
lines	GeneRIF Biological Term Annotations	1.0	null
acute myeloid leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.17952
OLIG2	ChEA Transcription Factor Targets	1.0	null
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12905
CAMA-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00001
pancreatic carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.382966
GATA3	ENCODE Transcription Factor Targets	1.0	null
phosphataselike	GeneRIF Biological Term Annotations	1.0	null
uroepithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.785635
melanocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.260267
MEWO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21562
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.47167
atm	GeneRIF Biological Term Annotations	1.0	null
breast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.362273
HEL9217	CCLE Cell Line Gene CNV Profiles	1.0	2.7308
REC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06655
outcome	GeneRIF Biological Term Annotations	1.0	null
ARID3A_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.865159
emphasizing	GeneRIF Biological Term Annotations	1.0	null
induces	GeneRIF Biological Term Annotations	1.0	null
pancreatic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.23176
enhanced	GeneRIF Biological Term Annotations	1.0	null
suppressing	GeneRIF Biological Term Annotations	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
JHH-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.874468
KATO III	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.983447
resistance	GeneRIF Biological Term Annotations	1.0	null
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44205
EP300_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
targets	GeneRIF Biological Term Annotations	1.0	null
neck	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.101413
cytoskeletal part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044411
Mouth Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
pharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.096466
SW 837	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.983447
digestive juice	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.156123
predictor	GeneRIF Biological Term Annotations	1.0	null
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064788
pancreatic	GeneRIF Biological Term Annotations	1.0	null
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.85152
leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066577
FOXA1_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.981621
CEBPB_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EHMT2_KD_GSE34925_693_human_MDA-MB231 cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
SNU-638	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.941726
follicular adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.292616
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043051
validated	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_embryonic fibroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
pathways	GeneRIF Biological Term Annotations	1.0	null
FOXA1_HepG2_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
consider	GeneRIF Biological Term Annotations	1.0	null
bone cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.395709
least	GeneRIF Biological Term Annotations	1.0	null
OLIG2-23332759-OLIGODENDROCYTES-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
aspc-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.342602
endometrial cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.175506
members	GeneRIF Biological Term Annotations	1.0	null
mir99a	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_heart_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
BFTC-909	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.874468
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.252261
lung cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07634
CTCF	ENCODE Transcription Factor Targets	1.0	null
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04644
metastasis	GeneRIF Biological Term Annotations	1.0	null
advanced	GeneRIF Biological Term Annotations	1.0	null
cartilage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063606
lymph node	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.719524
mir100	GeneRIF Biological Term Annotations	1.0	null
E2F4	ENCODE Transcription Factor Targets	1.0	null
effects	GeneRIF Biological Term Annotations	1.0	null
U266B1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.93183
pancreatic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.156832
cervical epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.365633
spliceosomal complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.273367
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.21998
roles	GeneRIF Biological Term Annotations	1.0	null
HCC366	CCLE Cell Line Gene CNV Profiles	1.0	2.11029
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041171
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052418
inhibited	GeneRIF Biological Term Annotations	1.0	null
benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042386
processes	GeneRIF Biological Term Annotations	1.0	null
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.04882
cervix small cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.908142
RUNX2-22187159-PCA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.076795
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.942443
gastric mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.110817
urinary bladder cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.60893
Kidney Diseases	CTD Gene-Disease Associations	1.0	1.16269
NCIH727	CCLE Cell Line Gene CNV Profiles	1.0	1.46519
nonmetastatic	GeneRIF Biological Term Annotations	1.0	null
bxpc-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.238108
GATA3_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ovarian carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.40008
aml	GeneRIF Biological Term Annotations	1.0	null
NCI-H727	COSMIC Cell Line Gene CNV Profiles	1.0	2.15316
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.630314
plk1	GeneRIF Biological Term Annotations	1.0	null
therapy	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_limb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
experiments	GeneRIF Biological Term Annotations	1.0	null
b-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.120306
JUND_HCT116_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KPL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.940572
ovary epithelial cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.397098
breast cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.507457
tumorigenesis	GeneRIF Biological Term Annotations	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.03171
H3K4me1_liver_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
breast cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.374618
prognostic	GeneRIF Biological Term Annotations	1.0	null
membrane-bounded vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.057631
connective tissue cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.180652
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041753
capacity	GeneRIF Biological Term Annotations	1.0	null
leads	GeneRIF Biological Term Annotations	1.0	null
urinary bladder cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.608527
PPARD-21283829-MYOFIBROBLAST-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
lymphoblastic	GeneRIF Biological Term Annotations	1.0	null
follicular thyroid cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.194893
throat	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.114496
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045974
epidermal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.235457
inhibits	GeneRIF Biological Term Annotations	1.0	null