association	dataset	threshold value	standardized value
arrests	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_skeletal muscle cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
steatosis	GeneRIF Biological Term Annotations	1.0	null
studies	GeneRIF Biological Term Annotations	1.0	null
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.950823
renal	GeneRIF Biological Term Annotations	1.0	null
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.377621
rhogtpasedependent	GeneRIF Biological Term Annotations	1.0	null
lymph	GeneRIF Biological Term Annotations	1.0	null
HMGN3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pancreatic	GeneRIF Biological Term Annotations	1.0	null
19895320-Table1	GeneSigDB Published Gene Signatures	1.0	null
H3K4me3_fibroblast of upper leg skin_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
chondrosarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.416195
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.97285
compared	GeneRIF Biological Term Annotations	1.0	null
ratio	GeneRIF Biological Term Annotations	1.0	null
urinary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.570718
monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045741
LN-18	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83655
H3K9me3_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SUZ12_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU878	CCLE Cell Line Gene CNV Profiles	1.0	1.92164
relevant	GeneRIF Biological Term Annotations	1.0	null
renal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.475634
esophageal	GeneRIF Biological Term Annotations	1.0	null
endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.082445
H3K27me3_H7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mirna	GeneRIF Biological Term Annotations	1.0	null
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34645
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060166
mirs10ab	GeneRIF Biological Term Annotations	1.0	null
improved	GeneRIF Biological Term Annotations	1.0	null
tumour	GeneRIF Biological Term Annotations	1.0	null
USF1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.351382
Acute Kidney Injury	CTD Gene-Disease Associations	1.0	1.06661
H3K27me3_cerebellum_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
node	GeneRIF Biological Term Annotations	1.0	null
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.060373
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23581
H3K27me3_liver_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nerve sheath cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.623446
TET1-21451524-MESC-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
COV362	CCLE Cell Line Gene CNV Profiles	1.0	1.44525
ZMIZ1	ENCODE Transcription Factor Targets	1.0	null
hypoxiainducible	GeneRIF Biological Term Annotations	1.0	null
stimulate	GeneRIF Biological Term Annotations	1.0	null
intramuscular adipose tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.344079
H3K4me2_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.975239
phenotypes	GeneRIF Biological Term Annotations	1.0	null
phosphorylation	GeneRIF Biological Term Annotations	1.0	null
pten	GeneRIF Biological Term Annotations	1.0	null
tumours	GeneRIF Biological Term Annotations	1.0	null
oncogenesis	GeneRIF Biological Term Annotations	1.0	null
cytoskeletal	GeneRIF Biological Term Annotations	1.0	null
existence	GeneRIF Biological Term Annotations	1.0	null
SIN3B	ChEA Transcription Factor Targets	1.0	null
H3K4me1_bone marrow macrophage_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
invasion	GeneRIF Biological Term Annotations	1.0	null
effectors	GeneRIF Biological Term Annotations	1.0	null
defects	GeneRIF Biological Term Annotations	1.0	null
possible	GeneRIF Biological Term Annotations	1.0	null
esophageal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.319498
nucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.177154
endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.559839
female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.054021
H3K4me3_brain microvascular endothelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Memory Disorders	CTD Gene-Disease Associations	1.0	1.22177
pdac	GeneRIF Biological Term Annotations	1.0	null
HEP G2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13693
cervix carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.157765
squamous epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075731
Weight Loss	CTD Gene-Disease Associations	1.0	1.27502
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856816
SUZ12_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
liver carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.246098
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.510206
H3K4me1_placenta_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
experimentally	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_skeletal muscle cell_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
higher	GeneRIF Biological Term Annotations	1.0	null
H3K4me2_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
correlation	GeneRIF Biological Term Annotations	1.0	null
glioblastoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.28213
link	GeneRIF Biological Term Annotations	1.0	null
JL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.56135
sfrs1dependent	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_GM06990_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
neurofibromatosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.197099
ZNF143	ENCODE Transcription Factor Targets	1.0	null
breast cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.05457
JUND	ENCODE Transcription Factor Targets	1.0	null
rosmediated	GeneRIF Biological Term Annotations	1.0	null
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044114
BHY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17825
H3K4me3_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
pancreatic cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.127628
KYSE-70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09947
multimodality	GeneRIF Biological Term Annotations	1.0	null
raising	GeneRIF Biological Term Annotations	1.0	null
relapse	GeneRIF Biological Term Annotations	1.0	null
Uterine Cervical Neoplasms	CTD Gene-Disease Associations	1.0	1.24024
astroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.154272
Fever	CTD Gene-Disease Associations	1.0	1.02971
effect	GeneRIF Biological Term Annotations	1.0	null
LXFL529	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37641
cytoplasmic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041837
bone marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060798
vasculature	GeneRIF Biological Term Annotations	1.0	null
G130	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17825
esophageal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.18472
bladder	GeneRIF Biological Term Annotations	1.0	null
npc	GeneRIF Biological Term Annotations	1.0	null
CAPAN1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33575
HEB	MotifMap Predicted Transcription Factor Targets	1.0	null
SLR26	CCLE Cell Line Gene CNV Profiles	1.0	1.44482
thyroid	GeneRIF Biological Term Annotations	1.0	null
controlled	GeneRIF Biological Term Annotations	1.0	null
actively	GeneRIF Biological Term Annotations	1.0	null
bone cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080431
pancreatic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.60225
VMRCRCZ	CCLE Cell Line Gene CNV Profiles	1.0	1.40672
autosomal dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.055059
RCOR1_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.049599
USF1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
proliferation	GeneRIF Biological Term Annotations	1.0	null
Hyperplasia	CTD Gene-Disease Associations	1.0	1.43482
breast cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.878243
Neural Tube Defects	CTD Gene-Disease Associations	1.0	1.11877
p38	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of skin of abdomen_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
transcriptional	GeneRIF Biological Term Annotations	1.0	null
primary	GeneRIF Biological Term Annotations	1.0	null
HUH-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41534
cancer stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.441426
UMC-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01177
LAMA84	CCLE Cell Line Gene CNV Profiles	-1.0	-1.62709
escape	GeneRIF Biological Term Annotations	1.0	null
germ layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058043
H3K27me3_spleen_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RD	CCLE Cell Line Gene CNV Profiles	1.0	1.50074
induced	GeneRIF Biological Term Annotations	1.0	null
overexpression	GeneRIF Biological Term Annotations	1.0	null
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.24894
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.74846
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.05721
mir196b	GeneRIF Biological Term Annotations	1.0	null
SHP77	CCLE Cell Line Gene CNV Profiles	-1.0	-2.12753
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.00545
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068
H3K27me3_cardiac mesoderm_hg19_8	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nf1	GeneRIF Biological Term Annotations	1.0	null
micb	GeneRIF Biological Term Annotations	1.0	null
apolipoprotein b mrna editing enzyme complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.5568
frequently	GeneRIF Biological Term Annotations	1.0	null
ovarian cancer	GAD Gene-Disease Associations	1.0	null
downregulating	GeneRIF Biological Term Annotations	1.0	null
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.48736
SU-DHL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30544
cadm1	GeneRIF Biological Term Annotations	1.0	null
possibility	GeneRIF Biological Term Annotations	1.0	null
status	GeneRIF Biological Term Annotations	1.0	null
mirnas	GeneRIF Biological Term Annotations	1.0	null
mir10a10b	GeneRIF Biological Term Annotations	1.0	null
USF1_A549_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
breast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.21802
ZMIZ1_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
process	GeneRIF Biological Term Annotations	1.0	null
NCIH1793	CCLE Cell Line Gene CNV Profiles	1.0	1.65133
H3K4me3_embryonic fibroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Edema	CTD Gene-Disease Associations	1.0	1.24433
H3K4me3_HEK293_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ectopic	GeneRIF Biological Term Annotations	1.0	null
MKN-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02259
highrisk	GeneRIF Biological Term Annotations	1.0	null
intermediate filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.108701
ecadherinrelated	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
RERFGC1B	CCLE Cell Line Gene CNV Profiles	1.0	1.74434
respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.252774
H3K4me3_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
glioblastoma multiforme	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.988114
mirna10b	GeneRIF Biological Term Annotations	1.0	null
ecadherin	GeneRIF Biological Term Annotations	1.0	null
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16998
cascade	GeneRIF Biological Term Annotations	1.0	null
provides	GeneRIF Biological Term Annotations	1.0	null
USF1_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
astrocytoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.42191
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23888
one	GeneRIF Biological Term Annotations	1.0	null
H2BK12ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
ZNF384_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06153
tbx5	GeneRIF Biological Term Annotations	1.0	null
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055051
H2AFZ_astrocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
HCC2814	CCLE Cell Line Gene CNV Profiles	1.0	1.58873
cytoskeleton	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_cerebellum_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
independent	GeneRIF Biological Term Annotations	1.0	null
USF1_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OVMANA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09561
FXR	MotifMap Predicted Transcription Factor Targets	1.0	null
mesoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.229032
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039605
USF1_A549_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hepatocytes	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_G1E_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
breast	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_mononuclear cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
thoracic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.22042
MAZ_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
HDAC2	ENCODE Transcription Factor Targets	1.0	null
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.339639
define	GeneRIF Biological Term Annotations	1.0	null
ATF3	ENCODE Transcription Factor Targets	1.0	null
BICR 78	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39343
H3K4me1_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17825
microvascular endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.172108
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.48736
mir10bsyndecan1	GeneRIF Biological Term Annotations	1.0	null
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.20742
upregulation	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_iPS DF 19.11	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
brain cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.534635
malignant peripheral nerve sheath cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.629101
KDM5B_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
formation	GeneRIF Biological Term Annotations	1.0	null
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.31013
contribute	GeneRIF Biological Term Annotations	1.0	null
glioblastoma	GeneRIF Biological Term Annotations	1.0	null
spreading	GeneRIF Biological Term Annotations	1.0	null
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.280717
turn	GeneRIF Biological Term Annotations	1.0	null
microrna10b	GeneRIF Biological Term Annotations	1.0	null
non-small cell lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.225573
15284443-Table5	GeneSigDB Published Gene Signatures	1.0	null
15284443-Table6	GeneSigDB Published Gene Signatures	1.0	null
H3K9me3_Penis Foreskin Fibroblast Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
cytoplasmic stress granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.340017
lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.186811
xenograft	GeneRIF Biological Term Annotations	1.0	null
pancreatic adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.177553
pancreatic duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.196629
CBX2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041303
H3K4me3_A549_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
risk	GeneRIF Biological Term Annotations	1.0	null
colonic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059743
H3K36me3_U2OS_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
glioma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.417718
Necrosis	CTD Gene-Disease Associations	1.0	1.71524
including	GeneRIF Biological Term Annotations	1.0	null
RERF-GC-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.09205
unilateral	GeneRIF Biological Term Annotations	1.0	null
vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062168
prometastatic	GeneRIF Biological Term Annotations	1.0	null
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
nasopharyngeal carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.420004
tgfbeta	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_H7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JHH6	CCLE Cell Line Gene CNV Profiles	1.0	2.41761
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.37007
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39343
Carcinoma, Squamous Cell	CTD Gene-Disease Associations	1.0	1.18849
SF268	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83655
pathogenesis	GeneRIF Biological Term Annotations	1.0	null
cytoskeletal part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043761
selfrenewal	GeneRIF Biological Term Annotations	1.0	null
Adenocarcinoma	CTD Gene-Disease Associations	1.0	1.24718
pancreas adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.75005
KLF4_01_339	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	2.70428
esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.15845
hcc	GeneRIF Biological Term Annotations	1.0	null
CTBP2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BT20	CCLE Cell Line Gene CNV Profiles	1.0	1.75767
lan-5 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.622639
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20254
JUND_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
induces	GeneRIF Biological Term Annotations	1.0	null
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.48736
although	GeneRIF Biological Term Annotations	1.0	null
CTBP2	ENCODE Transcription Factor Targets	1.0	null
H3K4me1_brown adipose tissue_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K27me3_NT2-D1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH69	CCLE Cell Line Gene CNV Profiles	-1.0	-1.65281
carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.831547
ovary	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057602
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.875277
REC1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.06668
tgfbeta1	GeneRIF Biological Term Annotations	1.0	null
lines	GeneRIF Biological Term Annotations	1.0	null
immune	GeneRIF Biological Term Annotations	1.0	null
breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.22085
heart	GeneRIF Biological Term Annotations	1.0	null
pancreatic ductal adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.299242
differentgrade	GeneRIF Biological Term Annotations	1.0	null
mir23b	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
hyaluronancd44	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_ES-Bruce4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
pancreatic ductal carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.269521
EZH2	ENCODE Transcription Factor Targets	1.0	null
NCI-H2122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83655
assay	GeneRIF Biological Term Annotations	1.0	null
ovary cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065348
hoxd10	GeneRIF Biological Term Annotations	1.0	null
modulating	GeneRIF Biological Term Annotations	1.0	null
contextdependent	GeneRIF Biological Term Annotations	1.0	null
akt	GeneRIF Biological Term Annotations	1.0	null
cervix small cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.879833
H3K9me3_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CAL-85-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.837639
stem	GeneRIF Biological Term Annotations	1.0	null
GLC82	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3293
HS 578T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.837639
SNU840	CCLE Cell Line Gene CNV Profiles	-1.0	-1.78931
GRHL3_01_336	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	3.2248
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.105634
HS 766T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.837639
multiple	GeneRIF Biological Term Annotations	1.0	null
EP300	ENCODE Transcription Factor Targets	1.0	null
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.71982
MAX	ENCODE Transcription Factor Targets	1.0	null
tgfbetainduced	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_astrocyte of the spinal cord_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02259
fallopian tube	GTEx Tissue Gene Expression Profiles	1.0	1.51349
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.379626
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053505
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074575
splicing	GeneRIF Biological Term Annotations	1.0	null
validated	GeneRIF Biological Term Annotations	1.0	null
ncor2	GeneRIF Biological Term Annotations	1.0	null
nasopharyngeal	GeneRIF Biological Term Annotations	1.0	null
level	GeneRIF Biological Term Annotations	1.0	null
notch1	GeneRIF Biological Term Annotations	1.0	null
epithelial	GeneRIF Biological Term Annotations	1.0	null
mds	GeneRIF Biological Term Annotations	1.0	null
pancreatic ductal adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.885569
L540	CCLE Cell Line Gene CNV Profiles	1.0	1.63785
astrocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.949102
translational	GeneRIF Biological Term Annotations	1.0	null
rnai effector complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.367388
pleiotropic	GeneRIF Biological Term Annotations	1.0	null
nasopharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.148487
senescence	GeneRIF Biological Term Annotations	1.0	null
Glucose Intolerance	CTD Gene-Disease Associations	1.0	1.18816
ZNF384	ENCODE Transcription Factor Targets	1.0	null
kidney cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.511112
direct	GeneRIF Biological Term Annotations	1.0	null
Disease Models, Animal	CTD Gene-Disease Associations	1.0	1.54451
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.42708
H3K27me3_cardiac mesoderm_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
eye cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.193459
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.943075
H3K4me3_kidney epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K9ac_ES-Bruce4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
USF1_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
risc complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.386208
adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.996731
H3K4me3_ES-E14_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.462394
CHD7_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
inhibition	GeneRIF Biological Term Annotations	1.0	null
central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041171
NCI-H1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04555
H2AFZ_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
who	GeneRIF Biological Term Annotations	1.0	null
oligodendroglioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.164786
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.05237
REST_01_338	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	2.39451
DMS 53	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.61513
KYSE-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02622
T98G	CCLE Cell Line Gene CNV Profiles	1.0	1.59904
suppression	GeneRIF Biological Term Annotations	1.0	null
TM31	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47638
dysregulated	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_embryonic fibroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
report	GeneRIF Biological Term Annotations	1.0	null
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.335864
migration	GeneRIF Biological Term Annotations	1.0	null
lower	GeneRIF Biological Term Annotations	1.0	null
astroglial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.154272
JHOM1	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
H3K36me3_CH12.LX_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ductal	GeneRIF Biological Term Annotations	1.0	null
follicular	GeneRIF Biological Term Annotations	1.0	null
OVKATE	CCLE Cell Line Gene CNV Profiles	1.0	2.17955
CHD2_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
tumors	GeneRIF Biological Term Annotations	1.0	null
inhibits	GeneRIF Biological Term Annotations	1.0	null
bilateral	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_foreskin fibroblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
clinical	GeneRIF Biological Term Annotations	1.0	null
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055263
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83655
endometriotic	GeneRIF Biological Term Annotations	1.0	null
MAX_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH2227	CCLE Cell Line Gene CNV Profiles	1.0	1.45158
USF1_SK-N-SH_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
using	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
KDM5B	ENCODE Transcription Factor Targets	1.0	null
epithelialmesenchymal	GeneRIF Biological Term Annotations	1.0	null
silenced	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_CH12.LX_mm9_4	ENCODE Histone Modification Site Profiles	1.0	null
KASUMI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67706
H3K9me3_megakaryocyte_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.335864
H3K79me1_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
KMS28BM	CCLE Cell Line Gene CNV Profiles	-1.0	-2.35117
intervertebral disc	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.405935
HCC2218	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.883655
DMS 454	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30336
participates	GeneRIF Biological Term Annotations	1.0	null
epithelial ovarian cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.357058
H3K27me3_cardiac mesoderm_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Pain	CTD Gene-Disease Associations	1.0	1.01099
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053161
bone cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059275
disc	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of mammary gland_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_astrocyte of the cerebellum_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
NELFE_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RAD21_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
large intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06241
sense organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063852
HCC202	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39491
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.71691
Lung Diseases	CTD Gene-Disease Associations	1.0	1.21984
H3K4me3_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
circulating	GeneRIF Biological Term Annotations	1.0	null
brain cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.253908
ZNF143_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
malignant glioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.886799
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	2.88009
JIMT-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.905681
malignant	GeneRIF Biological Term Annotations	1.0	null
H3K79me2_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02622
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.02237
prognosis	GeneRIF Biological Term Annotations	1.0	null
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.988554
H3K36me3_Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
GB1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34326
chemoresistance	GeneRIF Biological Term Annotations	1.0	null
nucleus pulposus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.558059
transition	GeneRIF Biological Term Annotations	1.0	null
AMO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15793
H3K27me3_cardiac mesoderm_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SUZ12	ENCODE Transcription Factor Targets	1.0	null
RBBP5	ENCODE Transcription Factor Targets	1.0	null
Breast Neoplasms	CTD Gene-Disease Associations	1.0	2.88009
TE4	CCLE Cell Line Gene CNV Profiles	1.0	2.45826
obtained	GeneRIF Biological Term Annotations	1.0	null
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10069
SW1783	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76067
acquisition	GeneRIF Biological Term Annotations	1.0	null
induce	GeneRIF Biological Term Annotations	1.0	null
heart	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081488
Proteinuria	CTD Gene-Disease Associations	1.0	1.06808
MAX_A549_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.06338
USF1_A549_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CBX2	ENCODE Transcription Factor Targets	1.0	null
KALS1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42172
TGBC24TKB	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
H3K4me3_HEK293_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.24494
H3K4me3_GM12875_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060378
mir2110b	GeneRIF Biological Term Annotations	1.0	null
critical	GeneRIF Biological Term Annotations	1.0	null
USF1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
into	GeneRIF Biological Term Annotations	1.0	null
metalloproteinase	GeneRIF Biological Term Annotations	1.0	null
KCI-MOH1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.61723
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
H3K36me3_G1E_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9me3_iPS DF 19.11	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Liver Neoplasms, Experimental	CTD Gene-Disease Associations	1.0	1.03827
oncogenes	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
H4K20me1_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
hmec-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.907961
H3K4me1_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
due	GeneRIF Biological Term Annotations	1.0	null
brain cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.436438
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.06162
H3K4me1_iPS DF 6.9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053137
highgrade	GeneRIF Biological Term Annotations	1.0	null
adenocarcinoma	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_kidney epithelial cell_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
nerve sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.296802
NCIH660	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6285
TET1	ChEA Transcription Factor Targets	1.0	null
ribonucleoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.076312
functions	GeneRIF Biological Term Annotations	1.0	null
astrocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.155917
glia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.156473
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.311
cyld	GeneRIF Biological Term Annotations	1.0	null
CHD2	ENCODE Transcription Factor Targets	1.0	null
huntington's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.182086
intervetebral	GeneRIF Biological Term Annotations	1.0	null
cfpac-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.562441
NCI-H1915	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.85441
H3K27me3_cardiac mesoderm_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
establishment	GeneRIF Biological Term Annotations	1.0	null
BGC823	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54726
therapy	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_brain microvascular endothelial cell_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K9me3_IMR90	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
revealed	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of the aortic adventitia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
secondary	GeneRIF Biological Term Annotations	1.0	null
pparalpha	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_Adult Liver	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
esophageal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.337072
squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.293866
colorectal	GeneRIF Biological Term Annotations	1.0	null
esophageal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.24804
positively	GeneRIF Biological Term Annotations	1.0	null
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
H3K4me2_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
oral cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.230382
H3K4me2_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
factors	GeneRIF Biological Term Annotations	1.0	null
rhocakt	GeneRIF Biological Term Annotations	1.0	null
Liver Diseases	CTD Gene-Disease Associations	1.0	1.3639
pancreatic carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.681495
partially	GeneRIF Biological Term Annotations	1.0	null
samples	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_CH12.LX_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.254017
PC14	CCLE Cell Line Gene CNV Profiles	1.0	1.88595
without	GeneRIF Biological Term Annotations	1.0	null
Heart Diseases	CTD Gene-Disease Associations	1.0	1.02596
H3K4me2_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
twist1	GeneRIF Biological Term Annotations	1.0	null
microvascular endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.175118
ovarian	GeneRIF Biological Term Annotations	1.0	null
blood vessel endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.092656
H3K27me3_ES-Bruce4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_CH12.LX_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.943935
T98G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.61513
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.362273
DMS114	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45222
H3K4me2_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
USF1_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.06118
HDAC2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27ac_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_lung_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061101
DB	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46279
glioblastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.454126
major	GeneRIF Biological Term Annotations	1.0	null
CTCF_kidney_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
capan-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.367502
colonic adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.219264
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34645
H3K4me1_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.061937
M059K	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2752
pancreatic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.428018
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.995425
focusing	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_placenta_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
wisp2	GeneRIF Biological Term Annotations	1.0	null
USF1	ENCODE Transcription Factor Targets	1.0	null
neurodegenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047905
Myocardial Reperfusion Injury	CTD Gene-Disease Associations	1.0	2.88009
exocrine pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.18958
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039107
esophageal squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.659085
NUGC2	CCLE Cell Line Gene CNV Profiles	1.0	1.58361
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.389666
nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.097553
H3K27me3_G1E-ER4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
profile	GeneRIF Biological Term Annotations	1.0	null
alternative	GeneRIF Biological Term Annotations	1.0	null
glioma	GeneRIF Biological Term Annotations	1.0	null
c-Myb	MotifMap Predicted Transcription Factor Targets	1.0	null
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26085
H3K4me1_MEL cell line_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
Leukemia, Promyelocytic, Acute	CTD Gene-Disease Associations	1.0	1.01966
lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.188938
mdamb231	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of skin of abdomen_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.772344
exhibiting	GeneRIF Biological Term Annotations	1.0	null
increase	GeneRIF Biological Term Annotations	1.0	null
metastasis	GeneRIF Biological Term Annotations	1.0	null
metastases	GeneRIF Biological Term Annotations	1.0	null
rhoc	GeneRIF Biological Term Annotations	1.0	null
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.288158
colorectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062836
H3K4me2_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
eye	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0746
H3K4me1_heart_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
brain cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.234302
networks	GeneRIF Biological Term Annotations	1.0	null
observed	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
C3A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.947094
H3K36me3_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ptch1	GeneRIF Biological Term Annotations	1.0	null
USF1_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
benefit	GeneRIF Biological Term Annotations	1.0	null
roles	GeneRIF Biological Term Annotations	1.0	null
fatty	GeneRIF Biological Term Annotations	1.0	null
significant	GeneRIF Biological Term Annotations	1.0	null
promotes	GeneRIF Biological Term Annotations	1.0	null
skeletal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055647
patient	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_WERI-Rb-1_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
Prenatal Exposure Delayed Effects	CTD Gene-Disease Associations	1.0	1.4076
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.875277
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.97935
central nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.324094
H3K4me1_brain_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Neoplasms	CTD Gene-Disease Associations	1.0	1.14336
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.48736
vascular endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.110878
TT	CCLE Cell Line Gene CNV Profiles	1.0	2.03918
Fibrosis	CTD Gene-Disease Associations	1.0	1.47167
most	GeneRIF Biological Term Annotations	1.0	null
neuroblastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.085085
mapk	GeneRIF Biological Term Annotations	1.0	null
Lung Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.81983
breast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.07176
H3K27me3_cardiac mesoderm_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO 853	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01177
H3K4me1_Neurosphere Cultured Cells Ganglionic Eminence Derived	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
nucleus	GeneRIF Biological Term Annotations	1.0	null
invasiveness	GeneRIF Biological Term Annotations	1.0	null
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.301398
interleukin6	GeneRIF Biological Term Annotations	1.0	null
EZH2_B cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lymph node	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.626677
specific	GeneRIF Biological Term Annotations	1.0	null
EVSAT	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4809
H3K27ac_H1 Derived Neuronal Progenitor Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Carcinoma, Hepatocellular	CTD Gene-Disease Associations	1.0	1.4087
csrcmediated	GeneRIF Biological Term Annotations	1.0	null
liver	GeneRIF Biological Term Annotations	1.0	null
neoadjuvant	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
mir10b	GeneRIF Biological Term Annotations	1.0	null
enhanced	GeneRIF Biological Term Annotations	1.0	null
NCIH1915	CCLE Cell Line Gene CNV Profiles	1.0	1.78889
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23581
argonaute	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_A549_hg19_4	ENCODE Histone Modification Site Profiles	1.0	null
poor	GeneRIF Biological Term Annotations	1.0	null
blood vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064668
H3K4me1_limb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_heart_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041584
products	GeneRIF Biological Term Annotations	1.0	null
pharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.077758
nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.18591
methylation	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_thymus_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
prognostic	GeneRIF Biological Term Annotations	1.0	null
involvement	GeneRIF Biological Term Annotations	1.0	null
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.957359
thorax	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.14919
macroglia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.137439
upar	GeneRIF Biological Term Annotations	1.0	null
tip30	GeneRIF Biological Term Annotations	1.0	null
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057942
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26085
pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.120628
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01074
esophageal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.15051
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.925907
RAD21	ENCODE Transcription Factor Targets	1.0	null
neoplasia	GeneRIF Biological Term Annotations	1.0	null
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.956299
USF2	ENCODE Transcription Factor Targets	1.0	null
useful	GeneRIF Biological Term Annotations	1.0	null
metastatic	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_ES-E14_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062891
y-79 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.54812
invasive	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_heart_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SIN3B-21632747-MESC-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
Kidney Diseases	CTD Gene-Disease Associations	1.0	1.52262
pax6	GeneRIF Biological Term Annotations	1.0	null
glial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.402523
endothelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.138185
review	GeneRIF Biological Term Annotations	1.0	null
Liver Neoplasms	CTD Gene-Disease Associations	1.0	1.15391
cervical cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.127985
delivery	GeneRIF Biological Term Annotations	1.0	null
bone cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079418
H3K9me3_megakaryocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
impairs	GeneRIF Biological Term Annotations	1.0	null
HUH1	CCLE Cell Line Gene CNV Profiles	1.0	1.34576
H3K9me3_fibroblast of lung_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.12445
attenuates	GeneRIF Biological Term Annotations	1.0	null
changes	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_epithelial cell of proximal tubule_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
gastric	GeneRIF Biological Term Annotations	1.0	null
mouse	GeneRIF Biological Term Annotations	1.0	null
spinal cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.13897
H3K4me3_fibroblast of upper leg skin_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
A-375	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17825
Weight Gain	CTD Gene-Disease Associations	1.0	1.14885
atsc	GeneRIF Biological Term Annotations	1.0	null
renal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.460506
treatment	GeneRIF Biological Term Annotations	1.0	null
gastrointestinal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058084
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065928
COLO 857	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07379
mmp14	GeneRIF Biological Term Annotations	1.0	null
ribonucleoprotein granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.182723
tp53	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_cardiac mesoderm_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
different	GeneRIF Biological Term Annotations	1.0	null
retinoblastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.202012
H3K27me3_cardiac mesoderm_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_C2C12_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
suppressors	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
cytoplasmic mrna processing body	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.282926
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
u-87mg cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.464948
oral cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080274
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.307167
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.58464
USF1_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
targeting	GeneRIF Biological Term Annotations	1.0	null
HMGN3	ENCODE Transcription Factor Targets	1.0	null
Anemia	CTD Gene-Disease Associations	1.0	1.23169
Carcinoma, Non-Small-Cell Lung	HuGE Navigator Gene-Phenotype Associations	1.0	null
H3K27me3_testis_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.328262
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.365095
highly	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_Breast Myoepithelial Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
NCIH146	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60678
BT-20	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.74276
inhibit	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_G1E-ER4_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OKAJIMA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39343
congenital	GeneRIF Biological Term Annotations	1.0	null
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.956299
glioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.6721
elevated	GeneRIF Biological Term Annotations	1.0	null
differentiation	GeneRIF Biological Term Annotations	1.0	null
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.34926
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17825
suppressing	GeneRIF Biological Term Annotations	1.0	null
NCI-H1623	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50228
OV90	CCLE Cell Line Gene CNV Profiles	1.0	1.37304
squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.173314
TBP_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
further	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_heart_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
ATF3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Inflammation	CTD Gene-Disease Associations	1.0	1.56068
NELFE	ENCODE Transcription Factor Targets	1.0	null
survival	GeneRIF Biological Term Annotations	1.0	null
HCC202	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32536
pancreatic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.122325
PK-45H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02551
concomitant	GeneRIF Biological Term Annotations	1.0	null
breast adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.995425
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.905681
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.287803
20054351-Table2	GeneSigDB Published Gene Signatures	1.0	null
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26085
liver cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.226607
tissues	GeneRIF Biological Term Annotations	1.0	null
characterized	GeneRIF Biological Term Annotations	1.0	null
identification	GeneRIF Biological Term Annotations	1.0	null
rectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060955
minimally	GeneRIF Biological Term Annotations	1.0	null
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
TGM2_KD_GSE23702_713_human_NB4 cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043062
USF2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.089678
locus	GeneRIF Biological Term Annotations	1.0	null
demonstrated	GeneRIF Biological Term Annotations	1.0	null
influence	GeneRIF Biological Term Annotations	1.0	null
Hepatomegaly	CTD Gene-Disease Associations	1.0	1.4449
endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.097172
reversed	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_epithelial cell of proximal tubule_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
astroglia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.152638
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055681
H3K9ac_ES-E14_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044667
H3K4me3_brain_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
after	GeneRIF Biological Term Annotations	1.0	null
posttranscriptional	GeneRIF Biological Term Annotations	1.0	null
HCC1806	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4156
pulposus	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_kidney_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_limb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
cytoplasmic ribonucleoprotein granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.13275
colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.246442
mda-mb-231 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.19534
alterations	GeneRIF Biological Term Annotations	1.0	null
neural	GeneRIF Biological Term Annotations	1.0	null
mir10a	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
klf4_17017123_rko_gof_human_gpl96_gds1942	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.185188
showed	GeneRIF Biological Term Annotations	1.0	null
neoplasms	GeneRIF Biological Term Annotations	1.0	null
upregulated	GeneRIF Biological Term Annotations	1.0	null
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37641
glial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.157853
H3K4me3_fibroblast of mammary gland_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_CH12.LX_mm9_5	ENCODE Histone Modification Site Profiles	1.0	null
mir373	GeneRIF Biological Term Annotations	1.0	null
HCC60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.928723
TE-4	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
H3K36me3_CH12.LX_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043133
Fatty Liver	CTD Gene-Disease Associations	1.0	2.88009
HCC1500	CCLE Cell Line Gene CNV Profiles	-1.0	-1.78228
H3K36me3_H1 Derived Mesenchymal Stem Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0853
Liver Cirrhosis	CTD Gene-Disease Associations	1.0	1.34256
22RV1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59712
H3K36me3_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
clear	GeneRIF Biological Term Annotations	1.0	null
Learning Disorders	CTD Gene-Disease Associations	1.0	1.29348
adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.841608
LP1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.91216
identify	GeneRIF Biological Term Annotations	1.0	null
humans	GeneRIF Biological Term Annotations	1.0	null
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39491
DU 145	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.974127
schwann cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.245807
promoter	GeneRIF Biological Term Annotations	1.0	null
xenografts	GeneRIF Biological Term Annotations	1.0	null
nonalcoholic	GeneRIF Biological Term Annotations	1.0	null
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.58464
bone marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061212
EFM19	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3729
Breast Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
ME1	CCLE Cell Line Gene CNV Profiles	-1.0	-3.15401
surveillance	GeneRIF Biological Term Annotations	1.0	null
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.857724
H3K4me3_astrocyte of the cerebellum_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
thus	GeneRIF Biological Term Annotations	1.0	null
type iii intermediate filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.174361
autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046753
vitro	GeneRIF Biological Term Annotations	1.0	null
variation	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_Neurosphere Cultured Cells Cortex Derived	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
impair	GeneRIF Biological Term Annotations	1.0	null
overexpressed	GeneRIF Biological Term Annotations	1.0	null
u-251 mg cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.328262
Prenatal Injuries	CTD Gene-Disease Associations	1.0	1.11186
syndecan1	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
spinal column	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.175058
squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080199
H3K4me3_CH12.LX_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
suggests	GeneRIF Biological Term Annotations	1.0	null
modulates	GeneRIF Biological Term Annotations	1.0	null
thereby	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
astrocytoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.2559
angiogenesis	GeneRIF Biological Term Annotations	1.0	null
NUGC-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32791
CAPAN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04555
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02259
MAZ	ENCODE Transcription Factor Targets	1.0	null
downregulation	GeneRIF Biological Term Annotations	1.0	null
HNF4	MotifMap Predicted Transcription Factor Targets	1.0	null
axis	GeneRIF Biological Term Annotations	1.0	null
CHP126	CCLE Cell Line Gene CNV Profiles	1.0	1.39369
nature	GeneRIF Biological Term Annotations	1.0	null
translation	GeneRIF Biological Term Annotations	1.0	null
distinguish	GeneRIF Biological Term Annotations	1.0	null
vascular endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.097172
foxo3	GeneRIF Biological Term Annotations	1.0	null
heparin	GeneRIF Biological Term Annotations	1.0	null
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01074
neuroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.102838
neuroblastoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.088461
mir10ab	GeneRIF Biological Term Annotations	1.0	null
retinoblastoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.454126
HUT78	CCLE Cell Line Gene CNV Profiles	-1.0	-2.08172
peripheral nerve sheath cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.623446
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.876448
Nerve Degeneration	CTD Gene-Disease Associations	1.0	1.17101
H3K4me3_fibroblast of the aortic adventitia_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
microvascular endothelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.217346
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041454
H3K36me3_CH12.LX_mm9_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
inactivation	GeneRIF Biological Term Annotations	1.0	null
twist	GeneRIF Biological Term Annotations	1.0	null
vivo	GeneRIF Biological Term Annotations	1.0	null
colorectal adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.180468
H3K4me1_H1 Derived Mesenchymal Stem Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
megakaryoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.24804
EP300_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
selenoprotein	GeneRIF Biological Term Annotations	1.0	null
USF1_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RCOR1	ENCODE Transcription Factor Targets	1.0	null
H3K4me3_brown adipose tissue_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
mesenchymal cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.196459
nuclear part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042891
CHD7	ENCODE Transcription Factor Targets	1.0	null
Ovarian Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062019
TBP	ENCODE Transcription Factor Targets	1.0	null
promoting	GeneRIF Biological Term Annotations	1.0	null
20406893-Table1a	GeneSigDB Published Gene Signatures	1.0	null
nonmetastatic	GeneRIF Biological Term Annotations	1.0	null
woundhealing	GeneRIF Biological Term Annotations	1.0	null
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08633
Ovarian Neoplasms	CTD Gene-Disease Associations	1.0	1.16368
H3K27me3_small intestine_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_astrocyte of the spinal cord_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
adipose tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.110649
DMS454	CCLE Cell Line Gene CNV Profiles	1.0	1.55322
degeneration	GeneRIF Biological Term Annotations	1.0	null
regulate	GeneRIF Biological Term Annotations	1.0	null
leading	GeneRIF Biological Term Annotations	1.0	null
such	GeneRIF Biological Term Annotations	1.0	null
Drug-Related Side Effects and Adverse Reactions	CTD Gene-Disease Associations	1.0	1.21468
peripheral nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071741
modulation	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
vascular endothelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.17803
rectal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.169485
MAX_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TMD8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.15241
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
hepatocellular carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.248203
H3K4me1_iPS DF 19.11	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null