association	dataset	threshold value	standardized value
tgfalphainduced	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_Mobilized CD34 Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
KDM5B_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
axis	GeneRIF Biological Term Annotations	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19493
MEG01	CCLE Cell Line Gene CNV Profiles	1.0	1.56311
TAF1_neural cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RAD21_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
kinase	GeneRIF Biological Term Annotations	1.0	null
tlr	GeneRIF Biological Term Annotations	1.0	null
umbilical	GeneRIF Biological Term Annotations	1.0	null
luciferasebinding	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_mononuclear cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
decreased brain size	MGI Mouse Phenotype Associations 2023	1.0	null
hepatocellular	GeneRIF Biological Term Annotations	1.0	null
system	GeneRIF Biological Term Annotations	1.0	null
low	GeneRIF Biological Term Annotations	1.0	null
Diabetes Mellitus, Type 2	HuGE Navigator Gene-Phenotype Associations	1.0	null
TAF1	ENCODE Transcription Factor Targets	1.0	null
repression	GeneRIF Biological Term Annotations	1.0	null
SW1417	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68264
subsets	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_cardiac mesoderm_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
stem	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
cord	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_SK-N-SH_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
multiple	GeneRIF Biological Term Annotations	1.0	null
GTF2F1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_bronchial epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
REST	ENCODE Transcription Factor Targets	1.0	null
cervical	GeneRIF Biological Term Annotations	1.0	null
stemness	GeneRIF Biological Term Annotations	1.0	null
highly	GeneRIF Biological Term Annotations	1.0	null
H3K4me2_H1 BMP4 Derived Trophoblast Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
hemorrhagic	GeneRIF Biological Term Annotations	1.0	null
proliferation	GeneRIF Biological Term Annotations	1.0	null
mirn124	GeneRIF Biological Term Annotations	1.0	null
miR-targeted genes in epithelium - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
steps	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
colorectal	GeneRIF Biological Term Annotations	1.0	null
OCI-AML3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44727
OCI-AML2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.944847
MV-4-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03105
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.6145
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12929
key	GeneRIF Biological Term Annotations	1.0	null
MAX_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
iqgap1	GeneRIF Biological Term Annotations	1.0	null
GTF2F1	ENCODE Transcription Factor Targets	1.0	null
EZH2_B cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
significant	GeneRIF Biological Term Annotations	1.0	null
rna	GeneRIF Biological Term Annotations	1.0	null
SAP30	ENCODE Transcription Factor Targets	1.0	null
alveolar	GeneRIF Biological Term Annotations	1.0	null
IM-95	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.6871
SUZ12_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
syndrome	GeneRIF Biological Term Annotations	1.0	null
HCC1187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.82926
SIN3A	ENCODE Transcription Factor Targets	1.0	null
cd95	GeneRIF Biological Term Annotations	1.0	null
upregulation	GeneRIF Biological Term Annotations	1.0	null
myelodysplastic	GeneRIF Biological Term Annotations	1.0	null
ASPC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.920754
myeloid	GeneRIF Biological Term Annotations	1.0	null
concurs	GeneRIF Biological Term Annotations	1.0	null
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09646
mongolian	GeneRIF Biological Term Annotations	1.0	null
mir1243p	GeneRIF Biological Term Annotations	1.0	null
H3K4me2_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
prostate	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_H7_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
neurogenic	GeneRIF Biological Term Annotations	1.0	null
NCI-H345	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30459
H3K27me3_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
primir1241	GeneRIF Biological Term Annotations	1.0	null
induces	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_Fetal Brain	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
accompanied	GeneRIF Biological Term Annotations	1.0	null
alzheimers	GeneRIF Biological Term Annotations	1.0	null
exhibits	GeneRIF Biological Term Annotations	1.0	null
H3K4me2_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PFEIFFER	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00711
GATA2	ENCODE Transcription Factor Targets	1.0	null
H3K36me3_H7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
vasculogenic	GeneRIF Biological Term Annotations	1.0	null
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.869472
microrna	GeneRIF Biological Term Annotations	1.0	null
OCI-AML5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.68759
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50006
H3K9ac_NT2-D1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
esophageal cancer	GAD Gene-Disease Associations	1.0	null
MYC_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
andor	GeneRIF Biological Term Annotations	1.0	null
20406893-Table1b	GeneSigDB Published Gene Signatures	1.0	null
EZH2_astrocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
event	GeneRIF Biological Term Annotations	1.0	null
overexpressed	GeneRIF Biological Term Annotations	1.0	null
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51388
BXPC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.86049
H3K27me3_cardiac mesoderm_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
related	GeneRIF Biological Term Annotations	1.0	null
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28383
invasive	GeneRIF Biological Term Annotations	1.0	null
increased neuron apoptosis	MGI Mouse Phenotype Associations 2023	1.0	null
amotl1	GeneRIF Biological Term Annotations	1.0	null
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0176
H3K4me2_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mir193a3p	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_HL-60_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K27me3_BJ_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
finally	GeneRIF Biological Term Annotations	1.0	null
rs4938723	GeneRIF Biological Term Annotations	1.0	null
NCI-H2804	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.935837
biomarker	GeneRIF Biological Term Annotations	1.0	null
represses	GeneRIF Biological Term Annotations	1.0	null
KCL22	CCLE Cell Line Gene CNV Profiles	1.0	1.96578
H3K27me3_cardiac mesoderm_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_SK-N-MC_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
20028859-TableS2	GeneSigDB Published Gene Signatures	1.0	null
il7	GeneRIF Biological Term Annotations	1.0	null
cohort	GeneRIF Biological Term Annotations	1.0	null
tissues	GeneRIF Biological Term Annotations	1.0	null
RAD21	ENCODE Transcription Factor Targets	1.0	null
cotarget	GeneRIF Biological Term Annotations	1.0	null
DV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44727
H3K4me1_Adipose Derived Mesenchymal Stem Cell Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
abnormal retina apoptosis	MGI Mouse Phenotype Associations 2023	1.0	null
POLR2AphosphoS5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me2_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
Uterine Cervical Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
revealed	GeneRIF Biological Term Annotations	1.0	null
mirna	GeneRIF Biological Term Annotations	1.0	null
postnatal lethality, incomplete penetrance	MGI Mouse Phenotype Associations 2023	1.0	null
hsamir124a	GeneRIF Biological Term Annotations	1.0	null
mir147	GeneRIF Biological Term Annotations	1.0	null
ulcerative	GeneRIF Biological Term Annotations	1.0	null
SAP30_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JUND_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
underexpression	GeneRIF Biological Term Annotations	1.0	null
MCAS	CCLE Cell Line Gene CNV Profiles	-1.0	-1.99343
miR-targeted genes in muscle cell - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
TAF1_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal	GeneRIF Biological Term Annotations	1.0	null
first	GeneRIF Biological Term Annotations	1.0	null
constituents	GeneRIF Biological Term Annotations	1.0	null
inhibits	GeneRIF Biological Term Annotations	1.0	null
ECC10	CCLE Cell Line Gene CNV Profiles	1.0	1.67251
directly	GeneRIF Biological Term Annotations	1.0	null
NCIH209	CCLE Cell Line Gene CNV Profiles	1.0	2.30322
MAX_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39329
nfkbiz	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_BJ_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
induction	GeneRIF Biological Term Annotations	1.0	null
monocytic	GeneRIF Biological Term Annotations	1.0	null
COLO783	CCLE Cell Line Gene CNV Profiles	1.0	2.09333
CHD7_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
G292CLONEA141B1	CCLE Cell Line Gene CNV Profiles	1.0	3.27417
mir124a3	GeneRIF Biological Term Annotations	1.0	null
il6	GeneRIF Biological Term Annotations	1.0	null
LAMA84	CCLE Cell Line Gene CNV Profiles	1.0	1.40621
CEBPB	ENCODE Transcription Factor Targets	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00711
HCC70	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59445
mineralocorticoid	GeneRIF Biological Term Annotations	1.0	null
HDAC2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EGR1	ENCODE Transcription Factor Targets	1.0	null
EP300	ENCODE Transcription Factor Targets	1.0	null
H3K4me1_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
thereby	GeneRIF Biological Term Annotations	1.0	null
epithelialmesenchymal	GeneRIF Biological Term Annotations	1.0	null
medulloblastoma	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_H1 Derived Mesenchymal Stem Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
negative	GeneRIF Biological Term Annotations	1.0	null
RAD21_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_H7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU61	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48073
MXI1	ENCODE Transcription Factor Targets	1.0	null
upon	GeneRIF Biological Term Annotations	1.0	null
targeting	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_SK-N-MC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
accumbens	GeneRIF Biological Term Annotations	1.0	null
pik3ca	GeneRIF Biological Term Annotations	1.0	null
line	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_cardiac mesoderm_hg19_4	ENCODE Histone Modification Site Profiles	1.0	null
Mouth Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
H3K27ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K27me3_keratinocyte_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
decreased retina cone cell number	MGI Mouse Phenotype Associations 2023	1.0	null
EGR1_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
finetuning	GeneRIF Biological Term Annotations	1.0	null
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.918995
neoplasms	GeneRIF Biological Term Annotations	1.0	null
PANC 08.13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17758
mir124	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_NT2-D1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
clinical	GeneRIF Biological Term Annotations	1.0	null
suggests	GeneRIF Biological Term Annotations	1.0	null
COLO684	CCLE Cell Line Gene CNV Profiles	1.0	1.71558
decreased	GeneRIF Biological Term Annotations	1.0	null
mir9	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00184
SW 480	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1906
REST_neural cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gscs	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_fibroblast of lung_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
prognosis	GeneRIF Biological Term Annotations	1.0	null
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.935837
frequently	GeneRIF Biological Term Annotations	1.0	null
probably	GeneRIF Biological Term Annotations	1.0	null
NCI-H1703	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10584
CHD2	ENCODE Transcription Factor Targets	1.0	null
CTCF_H1-hESC_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
crucial	GeneRIF Biological Term Annotations	1.0	null
SIRT6_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1155	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44727
JHH-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.83055
nuclear	GeneRIF Biological Term Annotations	1.0	null
HCC2814	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5821
H3K4me3_cardiac mesoderm_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
preference	GeneRIF Biological Term Annotations	1.0	null
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33386
certain	GeneRIF Biological Term Annotations	1.0	null
reninangiotensinaldosterone	GeneRIF Biological Term Annotations	1.0	null
MT-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.952552
dna	GeneRIF Biological Term Annotations	1.0	null
EWSR1	ChEA Transcription Factor Targets	1.0	null
rock1	GeneRIF Biological Term Annotations	1.0	null
allele	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_H1 BMP4 Derived Mesendoderm Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
regulate	GeneRIF Biological Term Annotations	1.0	null
present	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_NT2-D1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CAL 54	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.920754
rock2	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_Brain Hippocampus Middle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
serves	GeneRIF Biological Term Annotations	1.0	null
distribution	GeneRIF Biological Term Annotations	1.0	null
Adenocarcinoma	HuGE Navigator Gene-Phenotype Associations	1.0	null
positive	GeneRIF Biological Term Annotations	1.0	null
RBBP5	ENCODE Transcription Factor Targets	1.0	null
KDM4A	ENCODE Transcription Factor Targets	1.0	null
reciprocal	GeneRIF Biological Term Annotations	1.0	null
down	GeneRIF Biological Term Annotations	1.0	null
using	GeneRIF Biological Term Annotations	1.0	null
Alzheimer Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
H3K27me3_kidney epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
micrornas	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_kidney epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.347
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
SUZ12_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ptb	GeneRIF Biological Term Annotations	1.0	null
messenger	GeneRIF Biological Term Annotations	1.0	null
HCC1171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.64246
H3K27me3_cardiac mesoderm_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
vivo	GeneRIF Biological Term Annotations	1.0	null
acute	GeneRIF Biological Term Annotations	1.0	null
nucleus	GeneRIF Biological Term Annotations	1.0	null
MDAPCA2B	CCLE Cell Line Gene CNV Profiles	1.0	1.48911
WM88	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48615
IM-95M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44727
H2BK20ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
altered	GeneRIF Biological Term Annotations	1.0	null
pace4	GeneRIF Biological Term Annotations	1.0	null
three	GeneRIF Biological Term Annotations	1.0	null
mir1555p	GeneRIF Biological Term Annotations	1.0	null
hif1	GeneRIF Biological Term Annotations	1.0	null
app	GeneRIF Biological Term Annotations	1.0	null
activating	GeneRIF Biological Term Annotations	1.0	null
let7d	GeneRIF Biological Term Annotations	1.0	null
modulates	GeneRIF Biological Term Annotations	1.0	null
hmscs	GeneRIF Biological Term Annotations	1.0	null
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33338
seen	GeneRIF Biological Term Annotations	1.0	null
loss	GeneRIF Biological Term Annotations	1.0	null
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.42399
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.970301
primir34	GeneRIF Biological Term Annotations	1.0	null
macrophages	GeneRIF Biological Term Annotations	1.0	null
reduce	GeneRIF Biological Term Annotations	1.0	null
production	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
silenced	GeneRIF Biological Term Annotations	1.0	null
release	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_CD14-positive monocyte_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mirna34bc	GeneRIF Biological Term Annotations	1.0	null
rab38	GeneRIF Biological Term Annotations	1.0	null
assay	GeneRIF Biological Term Annotations	1.0	null
YY1	ENCODE Transcription Factor Targets	1.0	null
COLO-704	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14442
downregulating	GeneRIF Biological Term Annotations	1.0	null
suppresses	GeneRIF Biological Term Annotations	1.0	null
CHD7	ENCODE Transcription Factor Targets	1.0	null
controls	GeneRIF Biological Term Annotations	1.0	null
tumorsuppressive	GeneRIF Biological Term Annotations	1.0	null
SPI1	ENCODE Transcription Factor Targets	1.0	null
subsequently	GeneRIF Biological Term Annotations	1.0	null
targeted	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_cardiac mesoderm_hg19_8	ENCODE Transcription Factor Binding Site Profiles	1.0	null
impact	GeneRIF Biological Term Annotations	1.0	null
YY1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
YY1_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_mammary epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FXR	MotifMap Predicted Transcription Factor Targets	1.0	null
networks	GeneRIF Biological Term Annotations	1.0	null
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.61793
H3K9me3_IMR90	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
rest	GeneRIF Biological Term Annotations	1.0	null
CTCF_SK-N-SH_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KURAMOCHI	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44775
tuning	GeneRIF Biological Term Annotations	1.0	null
diverse	GeneRIF Biological Term Annotations	1.0	null
EZH2_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EP300_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pressure	GeneRIF Biological Term Annotations	1.0	null
vitro	GeneRIF Biological Term Annotations	1.0	null
stat3	GeneRIF Biological Term Annotations	1.0	null
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51388
H3K27me3_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cocaineinduced	GeneRIF Biological Term Annotations	1.0	null
specific	GeneRIF Biological Term Annotations	1.0	null
rs531564	GeneRIF Biological Term Annotations	1.0	null
conditioned	GeneRIF Biological Term Annotations	1.0	null
maintaining	GeneRIF Biological Term Annotations	1.0	null
HCC2157	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46336
SOX2_Deficiency_GDS4853_320_human_AZ-521 gastric cancer (GC) cell line - 12 Hours	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
philadelphianegative	GeneRIF Biological Term Annotations	1.0	null
therapeutics	GeneRIF Biological Term Annotations	1.0	null
h2o2induced	GeneRIF Biological Term Annotations	1.0	null
TBP_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SP4	ENCODE Transcription Factor Targets	1.0	null
activator	GeneRIF Biological Term Annotations	1.0	null
oral premalignant lesions	GAD Gene-Disease Associations	1.0	null
H3K4me3_cardiac mesoderm_hg19_6	ENCODE Histone Modification Site Profiles	1.0	null
HDAC6	ENCODE Transcription Factor Targets	1.0	null
SNU620	CCLE Cell Line Gene CNV Profiles	1.0	1.43175
PHF8	ENCODE Transcription Factor Targets	1.0	null
CTCF_WERI-Rb-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nr3c2	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
hypermethylation	GeneRIF Biological Term Annotations	1.0	null
invasion	GeneRIF Biological Term Annotations	1.0	null
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0579
signal	GeneRIF Biological Term Annotations	1.0	null
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.877026
pkm1	GeneRIF Biological Term Annotations	1.0	null
colitis	GeneRIF Biological Term Annotations	1.0	null
limb grasping	MGI Mouse Phenotype Associations 2023	1.0	null
JHH4	CCLE Cell Line Gene CNV Profiles	-1.0	-2.16589
BT549	CCLE Cell Line Gene CNV Profiles	1.0	1.61186
motility	GeneRIF Biological Term Annotations	1.0	null
hepatocyte	GeneRIF Biological Term Annotations	1.0	null
G120	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.82926
alpha-CP1	MotifMap Predicted Transcription Factor Targets	1.0	null
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17719
SU-DHL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35959
dysregulation	GeneRIF Biological Term Annotations	1.0	null
apoptosis	GeneRIF Biological Term Annotations	1.0	null
MKN7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34535
H3K4me1_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
regulator	GeneRIF Biological Term Annotations	1.0	null
CTBP2	ENCODE Transcription Factor Targets	1.0	null
SP4_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
p53	GeneRIF Biological Term Annotations	1.0	null
CTBP2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZNF143_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
miR-targeted genes in lymphocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
PC3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67297
H3K27me3_bronchial epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
their	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_neural cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Precancerous Conditions	HuGE Navigator Gene-Phenotype Associations	1.0	null
CHD1_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
binds	GeneRIF Biological Term Annotations	1.0	null
achieved	GeneRIF Biological Term Annotations	1.0	null
itgb1	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_SK-N-SH_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
targets	GeneRIF Biological Term Annotations	1.0	null
EZH2_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.6145
HCC2935	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.934616
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05508
regulated	GeneRIF Biological Term Annotations	1.0	null
TBP	ENCODE Transcription Factor Targets	1.0	null
partly	GeneRIF Biological Term Annotations	1.0	null
genotype	GeneRIF Biological Term Annotations	1.0	null
HOP-92	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.937272
serve	GeneRIF Biological Term Annotations	1.0	null
HCC202	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43887
HDAC6_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir124a1	GeneRIF Biological Term Annotations	1.0	null
myeloproliferative	GeneRIF Biological Term Annotations	1.0	null
lpsinduced	GeneRIF Biological Term Annotations	1.0	null
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.86049
Breast Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
abnormal hippocampus granule cell morphology	MGI Mouse Phenotype Associations 2023	1.0	null
pancreatic	GeneRIF Biological Term Annotations	1.0	null
Neoplasm Recurrence, Local	HuGE Navigator Gene-Phenotype Associations	1.0	null
SNU-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.876067
H3K9ac_Penis Foreskin Keratinocyte Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K4me2_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.5473
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07895
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.5031
H4K91ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
nscs	GeneRIF Biological Term Annotations	1.0	null
whose	GeneRIF Biological Term Annotations	1.0	null
promoters	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_astrocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TAF1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BACH1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HT29	CCLE Cell Line Gene CNV Profiles	-1.0	-1.85247
Kidney Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09568
CHD2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
population	GeneRIF Biological Term Annotations	1.0	null
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.979601
disruption	GeneRIF Biological Term Annotations	1.0	null
HCC1171	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
events	GeneRIF Biological Term Annotations	1.0	null
SK-MM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.886209
attenuates	GeneRIF Biological Term Annotations	1.0	null
common	GeneRIF Biological Term Annotations	1.0	null
migration	GeneRIF Biological Term Annotations	1.0	null
20086245-Table2b	GeneSigDB Published Gene Signatures	1.0	null
ischemic	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.5036
studied	GeneRIF Biological Term Annotations	1.0	null
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.847897
H3K4me3_fibroblast of gingiva_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06389
inhibiting	GeneRIF Biological Term Annotations	1.0	null
methylation	GeneRIF Biological Term Annotations	1.0	null
MCAS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.95765
JUND	ENCODE Transcription Factor Targets	1.0	null
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39377
miR-targeted genes in leukocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
splicing	GeneRIF Biological Term Annotations	1.0	null
PHF8_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
extensive	GeneRIF Biological Term Annotations	1.0	null
ATF2_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
sos1	GeneRIF Biological Term Annotations	1.0	null
mir124mediated	GeneRIF Biological Term Annotations	1.0	null
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.38526
indicating	GeneRIF Biological Term Annotations	1.0	null
inflammatory	GeneRIF Biological Term Annotations	1.0	null
fine	GeneRIF Biological Term Annotations	1.0	null
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28416
POLR2A_H54_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
precursor	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_NT2-D1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
indicates	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_NB4_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SNU-449	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.920754
various	GeneRIF Biological Term Annotations	1.0	null
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44064
mycobacterial	GeneRIF Biological Term Annotations	1.0	null
ZNF263_HEK293_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cellcycle	GeneRIF Biological Term Annotations	1.0	null
downregulates	GeneRIF Biological Term Annotations	1.0	null
Carcinoma, Non-Small-Cell Lung	HuGE Navigator Gene-Phenotype Associations	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
MXI1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
transcription	GeneRIF Biological Term Annotations	1.0	null
least	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
oscc	GeneRIF Biological Term Annotations	1.0	null
egfrdriven	GeneRIF Biological Term Annotations	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
global	GeneRIF Biological Term Annotations	1.0	null
infection	GeneRIF Biological Term Annotations	1.0	null
repressing	GeneRIF Biological Term Annotations	1.0	null
EGR1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ATF2	ENCODE Transcription Factor Targets	1.0	null
elevates	GeneRIF Biological Term Annotations	1.0	null
cd133cd34	GeneRIF Biological Term Annotations	1.0	null
amyloid	GeneRIF Biological Term Annotations	1.0	null
KDM5A	ENCODE Transcription Factor Targets	1.0	null
expressions	GeneRIF Biological Term Annotations	1.0	null
HS 940.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35959
Carcinoma, Squamous Cell	HuGE Navigator Gene-Phenotype Associations	1.0	null
place	GeneRIF Biological Term Annotations	1.0	null
SNU245	CCLE Cell Line Gene CNV Profiles	-1.0	-2.34652
neither	GeneRIF Biological Term Annotations	1.0	null
compared	GeneRIF Biological Term Annotations	1.0	null
decreases	GeneRIF Biological Term Annotations	1.0	null
BT-20	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17758
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28687
suppressors	GeneRIF Biological Term Annotations	1.0	null
phve	GeneRIF Biological Term Annotations	1.0	null
aggressivity	GeneRIF Biological Term Annotations	1.0	null
Nrf-1	MotifMap Predicted Transcription Factor Targets	1.0	null
THP1	CCLE Cell Line Gene CNV Profiles	1.0	1.38984
abnormal cone electrophysiology	MGI Mouse Phenotype Associations 2023	1.0	null
KDM4A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
provides	GeneRIF Biological Term Annotations	1.0	null
difference	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_H1 Derived Mesenchymal Stem Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
JHOS4	CCLE Cell Line Gene CNV Profiles	-1.0	-2.11295
DANG	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47918
TEAD4	ENCODE Transcription Factor Targets	1.0	null
KYSE-450	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10049
H3K4me3_WERI-Rb-1_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
SUZ12	ENCODE Transcription Factor Targets	1.0	null
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me2_B cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mir1241	GeneRIF Biological Term Annotations	1.0	null
POLR2A_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
breast	GeneRIF Biological Term Annotations	1.0	null
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.88944
hepatic	GeneRIF Biological Term Annotations	1.0	null
cebpa	GeneRIF Biological Term Annotations	1.0	null
NCI-H1781	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15316
markers	GeneRIF Biological Term Annotations	1.0	null
mir16	GeneRIF Biological Term Annotations	1.0	null
validation	GeneRIF Biological Term Annotations	1.0	null
CHD1	ENCODE Transcription Factor Targets	1.0	null
reported	GeneRIF Biological Term Annotations	1.0	null
rheumatoid	GeneRIF Biological Term Annotations	1.0	null
methylated	GeneRIF Biological Term Annotations	1.0	null
chinese	GeneRIF Biological Term Annotations	1.0	null
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0579
GATA2_SH-SY5Y_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44727
regulating	GeneRIF Biological Term Annotations	1.0	null
cytokine	GeneRIF Biological Term Annotations	1.0	null
radiosensitizes	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_WERI-Rb-1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
colon	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30459
mir	GeneRIF Biological Term Annotations	1.0	null
SNU475	CCLE Cell Line Gene CNV Profiles	-1.0	-1.8102
KDM5B	ENCODE Transcription Factor Targets	1.0	null
mir1243	GeneRIF Biological Term Annotations	1.0	null
Esophageal Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
COLO680N	CCLE Cell Line Gene CNV Profiles	-1.0	-1.90912
H3K27me3_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
segment	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_HL-60_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir203	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_Brain Cingulate Gyrus	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K27me3_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir124a	GeneRIF Biological Term Annotations	1.0	null
akt	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
mirnas	GeneRIF Biological Term Annotations	1.0	null
SIRT6	ENCODE Transcription Factor Targets	1.0	null
aml	GeneRIF Biological Term Annotations	1.0	null
leukemia	GeneRIF Biological Term Annotations	1.0	null
C32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.919521
status	GeneRIF Biological Term Annotations	1.0	null
H3K9ac_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
correlated	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
BACH1	ENCODE Transcription Factor Targets	1.0	null
stenotic	GeneRIF Biological Term Annotations	1.0	null
H3K79me2_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
mir135a	GeneRIF Biological Term Annotations	1.0	null
roles	GeneRIF Biological Term Annotations	1.0	null
MYC	ENCODE Transcription Factor Targets	1.0	null
esophageal	GeneRIF Biological Term Annotations	1.0	null
NCIH2023	CCLE Cell Line Gene CNV Profiles	1.0	2.54598
H3K27ac_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28371
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49832
addressed	GeneRIF Biological Term Annotations	1.0	null
suppressing	GeneRIF Biological Term Annotations	1.0	null
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.934948
POLR2A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
network	GeneRIF Biological Term Annotations	1.0	null
HCC12	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44727
H3K4me1_Fetal Brain	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
downregulated	GeneRIF Biological Term Annotations	1.0	null
transition	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_Brain Anterior Caudate	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05587
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39377
HCC1599	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32646
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.970301
sphk1	GeneRIF Biological Term Annotations	1.0	null
ezh2	GeneRIF Biological Term Annotations	1.0	null
squamous	GeneRIF Biological Term Annotations	1.0	null
suppressor	GeneRIF Biological Term Annotations	1.0	null
glioblastoma	GeneRIF Biological Term Annotations	1.0	null
EZH2_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
controlled	GeneRIF Biological Term Annotations	1.0	null
blood	GeneRIF Biological Term Annotations	1.0	null
specifically	GeneRIF Biological Term Annotations	1.0	null
decreased brain weight	MGI Mouse Phenotype Associations 2023	1.0	null
TEAD4_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_astrocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC70	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.83684
stroke	GeneRIF Biological Term Annotations	1.0	null
SKNMC	CCLE Cell Line Gene CNV Profiles	1.0	2.13219
KYSE-70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33338
H3K4me3_HEK293_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_H7_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
HCC202	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44064
downstream	GeneRIF Biological Term Annotations	1.0	null
mechanisms	GeneRIF Biological Term Annotations	1.0	null
alternative	GeneRIF Biological Term Annotations	1.0	null
iaspp	GeneRIF Biological Term Annotations	1.0	null
antiaggressive	GeneRIF Biological Term Annotations	1.0	null
EVSAT	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63532
H3K4me3_HEK293_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
REST_neural cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
embryonic	GeneRIF Biological Term Annotations	1.0	null
mimicry	GeneRIF Biological Term Annotations	1.0	null
miR-targeted genes in adipocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
MAX	ENCODE Transcription Factor Targets	1.0	null
H3K79me2_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ZNF263	ENCODE Transcription Factor Targets	1.0	null
profile	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_Brain Inferior Temporal Lobe	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
mir1242	GeneRIF Biological Term Annotations	1.0	null
TYK-NU.CP-R	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.979601
enzyme	GeneRIF Biological Term Annotations	1.0	null
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.935837
demonstrate	GeneRIF Biological Term Annotations	1.0	null
radiosensitivity	GeneRIF Biological Term Annotations	1.0	null
pediatric	GeneRIF Biological Term Annotations	1.0	null
miR-targeted genes in squamous cell - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
promoter	GeneRIF Biological Term Annotations	1.0	null
H3K79me1_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
JHOS-4	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.83684
mirna124a	GeneRIF Biological Term Annotations	1.0	null
therefore	GeneRIF Biological Term Annotations	1.0	null
WSU-DLCL2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44727
NCI-H2023	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.347
H3K27me3_cardiac mesoderm_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
changes	GeneRIF Biological Term Annotations	1.0	null
inhibited	GeneRIF Biological Term Annotations	1.0	null
carcinoma, renal cell; kidney neoplasms; neoplasm recurrence, local; renal cell carcinoma	GAD Gene-Disease Associations	1.0	null
mir124iaspp	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
H3K18ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K4me3_fibroblast of gingiva_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
antiproliferative	GeneRIF Biological Term Annotations	1.0	null
H3K4me2_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
pyruvate	GeneRIF Biological Term Annotations	1.0	null
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22315
MDAMB361	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46336
SPI1_HL-60_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.952268
slug	GeneRIF Biological Term Annotations	1.0	null
diagnostic	GeneRIF Biological Term Annotations	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
H3K4me3_BE2C_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
risk	GeneRIF Biological Term Annotations	1.0	null
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TMD8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.902664
Lung Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
converting	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_Adipose Derived Mesenchymal Stem Cell Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
effects	GeneRIF Biological Term Annotations	1.0	null
differentiation	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
part	GeneRIF Biological Term Annotations	1.0	null
hnf4alpha	GeneRIF Biological Term Annotations	1.0	null
sox9	GeneRIF Biological Term Annotations	1.0	null
Carcinoma, Renal Cell	HuGE Navigator Gene-Phenotype Associations	1.0	null
epigenetically	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SIN3A_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulatory	GeneRIF Biological Term Annotations	1.0	null
NFIC	JASPAR Predicted Transcription Factor Targets	1.0	null
JJN3	CCLE Cell Line Gene CNV Profiles	1.0	1.64472
metastasis	GeneRIF Biological Term Annotations	1.0	null
androgen	GeneRIF Biological Term Annotations	1.0	null
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00274
H3K4me3_HL-60_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CHD1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CEBPB_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
neuronal	GeneRIF Biological Term Annotations	1.0	null
active	GeneRIF Biological Term Annotations	1.0	null
HDAC2	ENCODE Transcription Factor Targets	1.0	null
diagnosis	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
discriminate	GeneRIF Biological Term Annotations	1.0	null
growthsuppressive	GeneRIF Biological Term Annotations	1.0	null
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.347
EP300_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_cardiac mesoderm_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_GM06990_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_BE2C_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
hcc	GeneRIF Biological Term Annotations	1.0	null
favorable	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_H7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
transducer	GeneRIF Biological Term Annotations	1.0	null
tnfalpha	GeneRIF Biological Term Annotations	1.0	null
mir124a2	GeneRIF Biological Term Annotations	1.0	null
occurrence	GeneRIF Biological Term Annotations	1.0	null
abnormal retina cone cell morphology	MGI Mouse Phenotype Associations 2023	1.0	null
hscr	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_Penis Foreskin Fibroblast Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K36me3_H7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EWS-FLI1-20517297-SK-N-MC-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
LU99	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44591
nor	GeneRIF Biological Term Annotations	1.0	null
arthritis	GeneRIF Biological Term Annotations	1.0	null
antitumor	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_mononuclear cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
tumorigenesis	GeneRIF Biological Term Annotations	1.0	null
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.886209
CTCF_SK-N-SH_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cytoskeletal	GeneRIF Biological Term Annotations	1.0	null
polarization	GeneRIF Biological Term Annotations	1.0	null
functions	GeneRIF Biological Term Annotations	1.0	null
downregulation	GeneRIF Biological Term Annotations	1.0	null
TOV-112D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.920754
into	GeneRIF Biological Term Annotations	1.0	null
HDAC2_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2AFZ_B cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
WSUDLCL2	CCLE Cell Line Gene CNV Profiles	1.0	1.45613
MXI1_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44727
POLR2A	ENCODE Transcription Factor Targets	1.0	null
tace	GeneRIF Biological Term Annotations	1.0	null
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir34a	GeneRIF Biological Term Annotations	1.0	null
metastatic	GeneRIF Biological Term Annotations	1.0	null
prrx1	GeneRIF Biological Term Annotations	1.0	null
l02	GeneRIF Biological Term Annotations	1.0	null
SW1116	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59185
SIN3A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZNF143	ENCODE Transcription Factor Targets	1.0	null
epigenetic	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_HL-60_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MOLM13	CCLE Cell Line Gene CNV Profiles	1.0	1.66831
H3K27me3_cardiac mesoderm_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gastric	GeneRIF Biological Term Annotations	1.0	null
glioma	GeneRIF Biological Term Annotations	1.0	null
cdk6	GeneRIF Biological Term Annotations	1.0	null
neuroblastoma	GeneRIF Biological Term Annotations	1.0	null
MAX_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
decrease	GeneRIF Biological Term Annotations	1.0	null
GSU	CCLE Cell Line Gene CNV Profiles	1.0	1.63524
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.35635
TAF1_neural cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me2_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
participate	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_Brain Mid Frontal Lobe	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K27me3_Colonic Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H4K20me1_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
POLR2AphosphoS5_neural cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
identification	GeneRIF Biological Term Annotations	1.0	null
inhibit	GeneRIF Biological Term Annotations	1.0	null
neuroectodermal	GeneRIF Biological Term Annotations	1.0	null
conversion	GeneRIF Biological Term Annotations	1.0	null
du145	GeneRIF Biological Term Annotations	1.0	null
evidence	GeneRIF Biological Term Annotations	1.0	null
SIN3A_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null