association	dataset	threshold value	standardized value
H3K27ac_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SKMEL2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33395
CTCF_WI38_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_fibroblast of pulmonary artery_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42501
POLR2A_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
WM983B	CCLE Cell Line Gene CNV Profiles	-1.0	-2.24195
CTCF_kidney epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_cardiac fibroblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
gcenriched	GeneRIF Biological Term Annotations	1.0	null
RBBP5	ENCODE Transcription Factor Targets	1.0	null
antagonist	GeneRIF Biological Term Annotations	1.0	null
H3K9ac_Stomach Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
EZH2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
YAPC	CCLE Cell Line Gene CNV Profiles	1.0	1.38725
H3K4me3_BJ_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
ME1	CCLE Cell Line Gene CNV Profiles	1.0	2.06506
involving	GeneRIF Biological Term Annotations	1.0	null
NCIH2110	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70967
erbb2	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of villous mesenchyme_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KYSE-450	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.70763
keratinocytes	GeneRIF Biological Term Annotations	1.0	null
RAD21_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
xray	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_cardiac mesoderm_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MCF-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10335
case	GeneRIF Biological Term Annotations	1.0	null
hexokinase	GeneRIF Biological Term Annotations	1.0	null
mir429	GeneRIF Biological Term Annotations	1.0	null
mir125b	GeneRIF Biological Term Annotations	1.0	null
specific	GeneRIF Biological Term Annotations	1.0	null
CTCF_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
effectively	GeneRIF Biological Term Annotations	1.0	null
prdm1blimp1	GeneRIF Biological Term Annotations	1.0	null
direct	GeneRIF Biological Term Annotations	1.0	null
suppressing	GeneRIF Biological Term Annotations	1.0	null
hec1b	GeneRIF Biological Term Annotations	1.0	null
tnf	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of mammary gland_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
multiple	GeneRIF Biological Term Annotations	1.0	null
RUNX1-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
ifnalphadriven	GeneRIF Biological Term Annotations	1.0	null
alphainduced	GeneRIF Biological Term Annotations	1.0	null
STAT3_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BJAB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31145
treatment	GeneRIF Biological Term Annotations	1.0	null
precursor	GeneRIF Biological Term Annotations	1.0	null
NCI-H1915	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42675
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.47167
SK-N-AS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27288
transfection	GeneRIF Biological Term Annotations	1.0	null
reveal	GeneRIF Biological Term Annotations	1.0	null
containing	GeneRIF Biological Term Annotations	1.0	null
aml	GeneRIF Biological Term Annotations	1.0	null
SF1	MotifMap Predicted Transcription Factor Targets	1.0	null
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58215
H3K4me1_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
p53	GeneRIF Biological Term Annotations	1.0	null
placentas	GeneRIF Biological Term Annotations	1.0	null
USF1_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_Mobilized CD34 Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
hypermethylated	GeneRIF Biological Term Annotations	1.0	null
MAX_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LOXL2_KD_GSE35600_688_human_MDA-MB-231 cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
H3K4me3_bronchial epithelial cell_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
members	GeneRIF Biological Term Annotations	1.0	null
propose	GeneRIF Biological Term Annotations	1.0	null
contribute	GeneRIF Biological Term Annotations	1.0	null
CA SKI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.829651
GATA3	ENCODE Transcription Factor Targets	1.0	null
after	GeneRIF Biological Term Annotations	1.0	null
hsamir223	GeneRIF Biological Term Annotations	1.0	null
either	GeneRIF Biological Term Annotations	1.0	null
GTF2F1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
calcification	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_foreskin fibroblast_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
POLR2AphosphoS5_U-87 MG_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
psoriasis	GeneRIF Biological Term Annotations	1.0	null
region	GeneRIF Biological Term Annotations	1.0	null
CTCF_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Staf	MotifMap Predicted Transcription Factor Targets	1.0	null
H3K4me3_fibroblast of the aortic adventitia_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_WI38_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_HCT116_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SAP30_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
migration	GeneRIF Biological Term Annotations	1.0	null
NCI-H2110	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.10672
bladder	GeneRIF Biological Term Annotations	1.0	null
serves	GeneRIF Biological Term Annotations	1.0	null
MAX_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lower	GeneRIF Biological Term Annotations	1.0	null
elevated	GeneRIF Biological Term Annotations	1.0	null
CTCF_H54_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_keratinocyte_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pancreatic	GeneRIF Biological Term Annotations	1.0	null
MAX_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
level	GeneRIF Biological Term Annotations	1.0	null
hsamir125b	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_cardiac muscle cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_foreskin fibroblast_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
motility	GeneRIF Biological Term Annotations	1.0	null
cpgrich	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_mammary epithelial cell_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
preeclampsia	GeneRIF Biological Term Annotations	1.0	null
diminished	GeneRIF Biological Term Annotations	1.0	null
mediators	GeneRIF Biological Term Annotations	1.0	null
CTCF_endothelial cell of umbilical vein_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
future	GeneRIF Biological Term Annotations	1.0	null
REST	ENCODE Transcription Factor Targets	1.0	null
subtypes	GeneRIF Biological Term Annotations	1.0	null
arid3a	GeneRIF Biological Term Annotations	1.0	null
JUND_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
microrna	GeneRIF Biological Term Annotations	1.0	null
NUDUL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47901
tumorsuppressive	GeneRIF Biological Term Annotations	1.0	null
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0371
KATO III	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.998611
supressor	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
binds	GeneRIF Biological Term Annotations	1.0	null
alone	GeneRIF Biological Term Annotations	1.0	null
dexamethasoneinduced	GeneRIF Biological Term Annotations	1.0	null
downregulated	GeneRIF Biological Term Annotations	1.0	null
apl	GeneRIF Biological Term Annotations	1.0	null
dose	GeneRIF Biological Term Annotations	1.0	null
due	GeneRIF Biological Term Annotations	1.0	null
GTF2F1	ENCODE Transcription Factor Targets	1.0	null
YY1_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TAF1_neural cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cd154	GeneRIF Biological Term Annotations	1.0	null
only	GeneRIF Biological Term Annotations	1.0	null
POLR2A_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mycobacterium	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_epithelial cell of esophagus_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
endometrioid	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of mammary gland_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_fibroblast of lung_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
showed	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
suppresses	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
TCF12_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RAD21_SK-N-SH_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_SK-N-SH_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
promote	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_PFSK-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
acquired	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39944
directly	GeneRIF Biological Term Annotations	1.0	null
TE4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48002
mir106bmir93mir25	GeneRIF Biological Term Annotations	1.0	null
CTCF_HCT116_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hela	GeneRIF Biological Term Annotations	1.0	null
ovarian	GeneRIF Biological Term Annotations	1.0	null
oct4	GeneRIF Biological Term Annotations	1.0	null
OVTOKO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88762
SOX10	MotifMap Predicted Transcription Factor Targets	1.0	null
H3K27me3_CD8 Memory Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CTCF_medulloblastoma_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
vivo	GeneRIF Biological Term Annotations	1.0	null
mir143	GeneRIF Biological Term Annotations	1.0	null
mechanisms	GeneRIF Biological Term Annotations	1.0	null
mediating	GeneRIF Biological Term Annotations	1.0	null
KE39	CCLE Cell Line Gene CNV Profiles	1.0	1.75084
theory	GeneRIF Biological Term Annotations	1.0	null
SUDHL5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35364
renal	GeneRIF Biological Term Annotations	1.0	null
STAT3	ENCODE Transcription Factor Targets	1.0	null
breast	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_BE2C_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mostly	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_Panc1_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
MYC	ENCODE Transcription Factor Targets	1.0	null
H3K9ac_Duodenum Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K4me3_fibroblast of upper leg skin_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
induced	GeneRIF Biological Term Annotations	1.0	null
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0371
resistance	GeneRIF Biological Term Annotations	1.0	null
chronic	GeneRIF Biological Term Annotations	1.0	null
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.996764
promoter	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_Fetal Lung	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.829651
H3K9ac_Colonic Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
capability	GeneRIF Biological Term Annotations	1.0	null
mir99a	GeneRIF Biological Term Annotations	1.0	null
vitro	GeneRIF Biological Term Annotations	1.0	null
TAF1_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CHP126	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63638
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.998611
EP300	ENCODE Transcription Factor Targets	1.0	null
involvement	GeneRIF Biological Term Annotations	1.0	null
coordinately	GeneRIF Biological Term Annotations	1.0	null
CTCF_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TMD8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23064
p14arf	GeneRIF Biological Term Annotations	1.0	null
SAP30	ENCODE Transcription Factor Targets	1.0	null
COLO 853	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.65748
FOS_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
A-673	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41434
dysfunction	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_H7_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
REC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08267
H3K4me3_Brain Substantia Nigra	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.917505
mir125b13p	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_cardiac mesoderm_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_Panc1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K9me3_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hematopoietic	GeneRIF Biological Term Annotations	1.0	null
leukemia	GeneRIF Biological Term Annotations	1.0	null
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.068
very	GeneRIF Biological Term Annotations	1.0	null
invasiveness	GeneRIF Biological Term Annotations	1.0	null
hepatocellular	GeneRIF Biological Term Annotations	1.0	null
cutaneous	GeneRIF Biological Term Annotations	1.0	null
enhanced	GeneRIF Biological Term Annotations	1.0	null
proapoptotic	GeneRIF Biological Term Annotations	1.0	null
stressmediated	GeneRIF Biological Term Annotations	1.0	null
HOXC9-25013753-NEUROBLASTOMA BE2-C-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
CMLT1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35632
TAF1_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
suppress	GeneRIF Biological Term Annotations	1.0	null
JL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31004
modulation	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12873_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JHH-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.85176
inhibiting	GeneRIF Biological Term Annotations	1.0	null
defects	GeneRIF Biological Term Annotations	1.0	null
breast cancer	GAD Gene-Disease Associations	1.0	null
suv39h1	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_cardiac mesoderm_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
stat3	GeneRIF Biological Term Annotations	1.0	null
HS 936.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31227
CTCF_brain microvascular endothelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
invasion	GeneRIF Biological Term Annotations	1.0	null
NCI-H2171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.917028
CTCF_MCF-7_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PANC 08.13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.92677
dendritic	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_cardiac muscle cell_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_astrocyte of the spinal cord_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K27me3_H7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
detected	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of lung_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HEL	CCLE Cell Line Gene CNV Profiles	1.0	2.06697
YY1	ENCODE Transcription Factor Targets	1.0	null
H3K27ac_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
20103675-Table1b	GeneSigDB Published Gene Signatures	1.0	null
recurrence	GeneRIF Biological Term Annotations	1.0	null
vincristine	GeneRIF Biological Term Annotations	1.0	null
oxidative	GeneRIF Biological Term Annotations	1.0	null
NU-DUL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23064
NCIH1694	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64417
among	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_retinal pigment epithelial cell_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_HEK293_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH1573	CCLE Cell Line Gene CNV Profiles	1.0	1.68224
CTCF_pancreas_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mice	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_skeletal muscle cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H727	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34335
USF1_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
CHD7	ENCODE Transcription Factor Targets	1.0	null
deficits	GeneRIF Biological Term Annotations	1.0	null
under	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM19240_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
state	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_HCT116_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CHD1	ENCODE Transcription Factor Targets	1.0	null
alzheimers	GeneRIF Biological Term Annotations	1.0	null
CTCF_astrocyte of the spinal cord_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.68116
mirna	GeneRIF Biological Term Annotations	1.0	null
cervical	GeneRIF Biological Term Annotations	1.0	null
their	GeneRIF Biological Term Annotations	1.0	null
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88762
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4696
cellular	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of lung_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
derived	GeneRIF Biological Term Annotations	1.0	null
hyperproliferation	GeneRIF Biological Term Annotations	1.0	null
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.16627
nsclc	GeneRIF Biological Term Annotations	1.0	null
KYSE-510	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.068
daunorubicin	GeneRIF Biological Term Annotations	1.0	null
CTCF_epithelial cell of proximal tubule_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_fibroblast of the aortic adventitia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
inhibitor	GeneRIF Biological Term Annotations	1.0	null
possible	GeneRIF Biological Term Annotations	1.0	null
confers	GeneRIF Biological Term Annotations	1.0	null
regulators	GeneRIF Biological Term Annotations	1.0	null
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.829209
H3K4me3_choroid plexus epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
contact	GeneRIF Biological Term Annotations	1.0	null
contributes	GeneRIF Biological Term Annotations	1.0	null
tuberculosis	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_cardiac mesoderm_hg19_8	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_HepG2_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2AFZ_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_fibroblast of pedal digit skin_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_MCF-7_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pigf	GeneRIF Biological Term Annotations	1.0	null
MAX_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_HepG2_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_SK-N-SH_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H2AFZ_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
facilitate	GeneRIF Biological Term Annotations	1.0	null
induction	GeneRIF Biological Term Annotations	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
report	GeneRIF Biological Term Annotations	1.0	null
predicts	GeneRIF Biological Term Annotations	1.0	null
authors	GeneRIF Biological Term Annotations	1.0	null
KYSE450	CCLE Cell Line Gene CNV Profiles	-1.0	-2.06762
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
769-P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20507
syndrome	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_Neurosphere Cultured Cells Cortex Derived	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
GATA3_SH-SY5Y_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TCF12	ENCODE Transcription Factor Targets	1.0	null
CTCF_astrocyte of the cerebellum_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
partly	GeneRIF Biological Term Annotations	1.0	null
inhibits	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
haileyhailey	GeneRIF Biological Term Annotations	1.0	null
C32	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68886
H3K4me3_fibroblast of skin of abdomen_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H1623	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16829
least	GeneRIF Biological Term Annotations	1.0	null
A204	CCLE Cell Line Gene CNV Profiles	1.0	1.71618
SIN3A_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU886	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68863
hsc	GeneRIF Biological Term Annotations	1.0	null
H3K4me2_B cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_SK-N-SH_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
prostate	GeneRIF Biological Term Annotations	1.0	null
recurrent	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_cardiac fibroblast_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
myelodysplastic	GeneRIF Biological Term Annotations	1.0	null
downregulation	GeneRIF Biological Term Annotations	1.0	null
myeloma	GeneRIF Biological Term Annotations	1.0	null
tau	GeneRIF Biological Term Annotations	1.0	null
POLR2A_H54_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_epithelial cell of proximal tubule_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
AR_01_278	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	2.3105
cellenriched	GeneRIF Biological Term Annotations	1.0	null
HCC2157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00847
virus	GeneRIF Biological Term Annotations	1.0	null
mir100	GeneRIF Biological Term Annotations	1.0	null
CEBPB	ENCODE Transcription Factor Targets	1.0	null
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07931
RL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.957523
CTCF_kidney_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir125a	GeneRIF Biological Term Annotations	1.0	null
rheumatoid	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_PFSK-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KDM4A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10393
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.829209
eczema	GeneRIF Biological Term Annotations	1.0	null
negatively	GeneRIF Biological Term Annotations	1.0	null
mir1792	GeneRIF Biological Term Annotations	1.0	null
HEL9217	CCLE Cell Line Gene CNV Profiles	1.0	2.72431
differentiation	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H727	COSMIC Cell Line Gene CNV Profiles	1.0	2.15316
OCILY10	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4772
H3K4me3_brain microvascular endothelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
JUND	ENCODE Transcription Factor Targets	1.0	null
H3K4me2_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SKNAS	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37952
functions	GeneRIF Biological Term Annotations	1.0	null
RAD21_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mmp2	GeneRIF Biological Term Annotations	1.0	null
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.879316
HNF4	MotifMap Predicted Transcription Factor Targets	1.0	null
H3K4me3_Duodenum Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.882644
H3K4me3_fibroblast of villous mesenchyme_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me2_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
bcell	GeneRIF Biological Term Annotations	1.0	null
keratinocyte	GeneRIF Biological Term Annotations	1.0	null
MDAMB134VI	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49299
H3K27ac_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
causes	GeneRIF Biological Term Annotations	1.0	null
STAT3_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SU-DHL-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27155
KDM5A	ENCODE Transcription Factor Targets	1.0	null
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07795
H3K27me3_cardiac mesoderm_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KDM4A	ENCODE Transcription Factor Targets	1.0	null
vascular	GeneRIF Biological Term Annotations	1.0	null
ML-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31145
HCC364	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.920487
CTCF_SK-N-SH_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
survive	GeneRIF Biological Term Annotations	1.0	null
CTCF_foreskin fibroblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9ac_Fetal Lung	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K9ac_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
expanding	GeneRIF Biological Term Annotations	1.0	null
lymphomas	GeneRIF Biological Term Annotations	1.0	null
EZH2_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
angiogenesis	GeneRIF Biological Term Annotations	1.0	null
remarkably	GeneRIF Biological Term Annotations	1.0	null
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.917505
H3K4me3_fibroblast of gingiva_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
LOXL2_DEPLETION_GDS4884_88_human_MDA-MB-231 cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
RDES	CCLE Cell Line Gene CNV Profiles	1.0	1.34455
POLR2AphosphoS5_U-87 MG_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pediatric	GeneRIF Biological Term Annotations	1.0	null
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.944309
icam2	GeneRIF Biological Term Annotations	1.0	null
NCI-H2795	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23064
USF1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CACO-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.936585
BFTC-909	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.85176
irradiation	GeneRIF Biological Term Annotations	1.0	null
erythematosus	GeneRIF Biological Term Annotations	1.0	null
adjacent	GeneRIF Biological Term Annotations	1.0	null
CTCF_MCF-7_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SW837	CCLE Cell Line Gene CNV Profiles	1.0	1.3572
CTCF_fibroblast of pulmonary artery_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_H7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mta1	GeneRIF Biological Term Annotations	1.0	null
matrix	GeneRIF Biological Term Annotations	1.0	null
AM38	CCLE Cell Line Gene CNV Profiles	1.0	1.71184
COLO 792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.068
TFs Regulate miRNAs related to cardiac hypertrophy(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
clusters	GeneRIF Biological Term Annotations	1.0	null
intracellular	GeneRIF Biological Term Annotations	1.0	null
survival	GeneRIF Biological Term Annotations	1.0	null
USF1	ENCODE Transcription Factor Targets	1.0	null
increases	GeneRIF Biological Term Annotations	1.0	null
FOS_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
oncomir	GeneRIF Biological Term Annotations	1.0	null
inhibited	GeneRIF Biological Term Annotations	1.0	null
locus	GeneRIF Biological Term Annotations	1.0	null
index	GeneRIF Biological Term Annotations	1.0	null
adaptation	GeneRIF Biological Term Annotations	1.0	null
mk2	GeneRIF Biological Term Annotations	1.0	null
mir192	GeneRIF Biological Term Annotations	1.0	null
CTCF_BE2C_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir126	GeneRIF Biological Term Annotations	1.0	null
SNU-638	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.956298
HOXC9	ChEA Transcription Factor Targets	1.0	null
H3K4me3_foreskin fibroblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
igh	GeneRIF Biological Term Annotations	1.0	null
U266B1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.85568
stromal	GeneRIF Biological Term Annotations	1.0	null
mir23a	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of pedal digit skin_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
decisions	GeneRIF Biological Term Annotations	1.0	null
hypermethylation	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
TBP	ENCODE Transcription Factor Targets	1.0	null
COLO678	CCLE Cell Line Gene CNV Profiles	1.0	1.45424
H3K4me3_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K27me3_CD14-positive monocyte_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
giving	GeneRIF Biological Term Annotations	1.0	null
tnfaip3	GeneRIF Biological Term Annotations	1.0	null
camp	GeneRIF Biological Term Annotations	1.0	null
cluster	GeneRIF Biological Term Annotations	1.0	null
REST_SK-N-SH_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.829209
micrornas	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-134-VI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20507
senescence	GeneRIF Biological Term Annotations	1.0	null
suppression	GeneRIF Biological Term Annotations	1.0	null
prognostic	GeneRIF Biological Term Annotations	1.0	null
antiapoptotic	GeneRIF Biological Term Annotations	1.0	null
nats	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_astrocyte of the spinal cord_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_skin fibroblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TK-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.57805
whereas	GeneRIF Biological Term Annotations	1.0	null
malignant	GeneRIF Biological Term Annotations	1.0	null
paclitaxel	GeneRIF Biological Term Annotations	1.0	null
glucose	GeneRIF Biological Term Annotations	1.0	null
obtained	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of skin of abdomen_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
atopic	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
invasive	GeneRIF Biological Term Annotations	1.0	null
proteasome	GeneRIF Biological Term Annotations	1.0	null
CTCF_keratinocyte_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
molecules	GeneRIF Biological Term Annotations	1.0	null
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.975817
H3K27ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K4ac_IMR90	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
failure	GeneRIF Biological Term Annotations	1.0	null
YY1_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27ac_fibroblast of lung_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me2_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
conferring	GeneRIF Biological Term Annotations	1.0	null
H3K4me2_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K27ac_Brain Cingulate Gyrus	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.65825
H3K4me3_BE2C_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
FOS_MCF 10A_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
approach	GeneRIF Biological Term Annotations	1.0	null
HCC78	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11223
H3K4me3_astrocyte of the cerebellum_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
activate	GeneRIF Biological Term Annotations	1.0	null
OVSAHO	CCLE Cell Line Gene CNV Profiles	-1.0	-2.04626
CACO2	CCLE Cell Line Gene CNV Profiles	1.0	1.33833
H3K4me3_keratinocyte_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
TAF1	ENCODE Transcription Factor Targets	1.0	null
core	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_B cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MicroRNAs in cardiomyocyte hypertrophy(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
roles	GeneRIF Biological Term Annotations	1.0	null
mirnas	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_BJ_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
transformed	GeneRIF Biological Term Annotations	1.0	null
therapeutic	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_WI38_hg19_4	ENCODE Histone Modification Site Profiles	1.0	null
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03595
combination	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of pedal digit skin_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir320b	GeneRIF Biological Term Annotations	1.0	null
endometrial	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of foreskin _hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
TAF1_PFSK-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KARPAS-422	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35533
H3K4me3_retinal pigment epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.944309
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.998611
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.85176
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
chemotherapy	GeneRIF Biological Term Annotations	1.0	null
preferentially	GeneRIF Biological Term Annotations	1.0	null
differentially	GeneRIF Biological Term Annotations	1.0	null
melanoma	GeneRIF Biological Term Annotations	1.0	null
CAL 27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12693
TAF1_PFSK-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
WM88	CCLE Cell Line Gene CNV Profiles	-1.0	-2.44402
H3K4me3_WI38_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_fibroblast of lung_hg19_6	ENCODE Histone Modification Site Profiles	1.0	null
POLR2AphosphoS5_neural cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07931
RUNX1	ChEA Transcription Factor Targets	1.0	null
rate	GeneRIF Biological Term Annotations	1.0	null
CTCF_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
p53independent	GeneRIF Biological Term Annotations	1.0	null
reports	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_skeletal muscle cell_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
HT	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1514
characteristic	GeneRIF Biological Term Annotations	1.0	null
tumour	GeneRIF Biological Term Annotations	1.0	null
systemic	GeneRIF Biological Term Annotations	1.0	null
factors	GeneRIF Biological Term Annotations	1.0	null
lmo2	GeneRIF Biological Term Annotations	1.0	null
aberrant	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_brain microvascular endothelial cell_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
19895320-Table2	GeneSigDB Published Gene Signatures	1.0	null
downregulates	GeneRIF Biological Term Annotations	1.0	null
mir199a	GeneRIF Biological Term Annotations	1.0	null
mir125	GeneRIF Biological Term Annotations	1.0	null
HDAC2	ENCODE Transcription Factor Targets	1.0	null
KPL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.917028
kinase	GeneRIF Biological Term Annotations	1.0	null
origin	GeneRIF Biological Term Annotations	1.0	null
macrophage	GeneRIF Biological Term Annotations	1.0	null
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.92877
CTCF_A549_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH929	CCLE Cell Line Gene CNV Profiles	1.0	1.81797
20028859-TableS2	GeneSigDB Published Gene Signatures	1.0	null
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.93172
FOS	ENCODE Transcription Factor Targets	1.0	null
H3K4me3_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_fibroblast of lung_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
low	GeneRIF Biological Term Annotations	1.0	null
TBP_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
provides	GeneRIF Biological Term Annotations	1.0	null
partially	GeneRIF Biological Term Annotations	1.0	null
nevi	GeneRIF Biological Term Annotations	1.0	null
furthermore	GeneRIF Biological Term Annotations	1.0	null
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.858476
mainly	GeneRIF Biological Term Annotations	1.0	null
myocardial	GeneRIF Biological Term Annotations	1.0	null
pigmented	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_bronchial epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_cardiac mesoderm_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hepatitis	GeneRIF Biological Term Annotations	1.0	null
prometastasis	GeneRIF Biological Term Annotations	1.0	null
CTCF_H1-hESC_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
network	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_Panc1_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_cardiac muscle cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_brain microvascular endothelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
translocation	GeneRIF Biological Term Annotations	1.0	null
NCIH650	CCLE Cell Line Gene CNV Profiles	1.0	1.51564
HT	CCLE Cell Line Gene CNV Profiles	-1.0	-1.66494
dysregulation	GeneRIF Biological Term Annotations	1.0	null
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31004
mir125b1	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
19924232-TableS3	GeneSigDB Published Gene Signatures	1.0	null
mir125b5p	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM19238_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ros	GeneRIF Biological Term Annotations	1.0	null
mir212mir132	GeneRIF Biological Term Annotations	1.0	null
POLR2A_IMR-90_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_epithelial cell of proximal tubule_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_GM19239_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulating	GeneRIF Biological Term Annotations	1.0	null
CTCF_WERI-Rb-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SMC3_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mimics	GeneRIF Biological Term Annotations	1.0	null
p53dependent	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_cardiac mesoderm_hg19_5	ENCODE Histone Modification Site Profiles	1.0	null
deprivation	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_Skeletal Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K4me3_WI38_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
upmodulation	GeneRIF Biological Term Annotations	1.0	null
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07795
POLR2A_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
upregulated	GeneRIF Biological Term Annotations	1.0	null
scnn1a	GeneRIF Biological Term Annotations	1.0	null
mitogenactivated	GeneRIF Biological Term Annotations	1.0	null
formation	GeneRIF Biological Term Annotations	1.0	null
generated	GeneRIF Biological Term Annotations	1.0	null
REST_PFSK-1_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
effects	GeneRIF Biological Term Annotations	1.0	null
plasma	GeneRIF Biological Term Annotations	1.0	null
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.879316
CTCF_mammary epithelial cell_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_neural cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TP63	ChEA Transcription Factor Targets	1.0	null
repression	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_cardiac mesoderm_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO 857	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.60941
H3K27me3_cardiac mesoderm_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.27585
regulated	GeneRIF Biological Term Annotations	1.0	null
CTCF_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NR3C1_01_141	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.595
family	GeneRIF Biological Term Annotations	1.0	null
distinguished	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_cardiac mesoderm_hg19_8	ENCODE Histone Modification Site Profiles	1.0	null
structural	GeneRIF Biological Term Annotations	1.0	null
SK-MM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52282
proliferation	GeneRIF Biological Term Annotations	1.0	null
upregulation	GeneRIF Biological Term Annotations	1.0	null
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.953948
upstream	GeneRIF Biological Term Annotations	1.0	null
OCIMY7	CCLE Cell Line Gene CNV Profiles	1.0	1.35026
MEWO	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35076
C32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27288
Lung Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
CTCF_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PL18	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.24687
CTCF_BJ_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_NT2-D1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SMC3	ENCODE Transcription Factor Targets	1.0	null
OCIMY5	CCLE Cell Line Gene CNV Profiles	1.0	1.97448
H3K9ac_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
arthritis	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of pulmonary artery_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CAR-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26724
leukemias	GeneRIF Biological Term Annotations	1.0	null
TP63-23658742-EP156T-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
cycle	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_epithelial cell of esophagus_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
infarction	GeneRIF Biological Term Annotations	1.0	null
EB-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2195
organs	GeneRIF Biological Term Annotations	1.0	null
atrich	GeneRIF Biological Term Annotations	1.0	null
NCIH526	CCLE Cell Line Gene CNV Profiles	1.0	2.47242
leads	GeneRIF Biological Term Annotations	1.0	null
SOX4	MotifMap Predicted Transcription Factor Targets	1.0	null
leading	GeneRIF Biological Term Annotations	1.0	null
transactivator	GeneRIF Biological Term Annotations	1.0	null
childhood	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_Fetal Lung	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
KHM-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.04441
CTCF_cardiac fibroblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
normal	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-468	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07931
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.99961
H3K4me1_iPS DF 6.9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
SNU761	CCLE Cell Line Gene CNV Profiles	-1.0	-2.14419
ets1	GeneRIF Biological Term Annotations	1.0	null
served	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of lung_hg19_4	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_fibroblast of foreskin _hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ectodermal	GeneRIF Biological Term Annotations	1.0	null
E2F6	ENCODE Transcription Factor Targets	1.0	null
tcell	GeneRIF Biological Term Annotations	1.0	null
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0371
clearcell	GeneRIF Biological Term Annotations	1.0	null
exosomes	GeneRIF Biological Term Annotations	1.0	null
let7c	GeneRIF Biological Term Annotations	1.0	null
confirm	GeneRIF Biological Term Annotations	1.0	null
over	GeneRIF Biological Term Annotations	1.0	null
20448109-Table2	GeneSigDB Published Gene Signatures	1.0	null
H3K4me3_endothelial cell of umbilical vein_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
poor	GeneRIF Biological Term Annotations	1.0	null
PANC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26724
apoptotic	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_kidney epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
probably	GeneRIF Biological Term Annotations	1.0	null
constitutively	GeneRIF Biological Term Annotations	1.0	null
skin	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of lung_hg19_7	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_HCT116_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MYC_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_spleen_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_mammary epithelial cell_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
negative	GeneRIF Biological Term Annotations	1.0	null
suppressed	GeneRIF Biological Term Annotations	1.0	null
serum	GeneRIF Biological Term Annotations	1.0	null
hyperphosphorylation	GeneRIF Biological Term Annotations	1.0	null
CAPAN2	CCLE Cell Line Gene CNV Profiles	1.0	1.3811
CTCF_MCF-7_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hcc	GeneRIF Biological Term Annotations	1.0	null
CTCF_retinal pigment epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RAD21_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
acidinduced	GeneRIF Biological Term Annotations	1.0	null
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.879316
arid3b	GeneRIF Biological Term Annotations	1.0	null
lines	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12873_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
rationale	GeneRIF Biological Term Annotations	1.0	null
trophoblast	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_HCT116_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
apoptosis	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
MAX	ENCODE Transcription Factor Targets	1.0	null
cdx2	GeneRIF Biological Term Annotations	1.0	null
nude	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_H7_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_HepG2_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nutrient	GeneRIF Biological Term Annotations	1.0	null
transcription	GeneRIF Biological Term Annotations	1.0	null
biosynthesis	GeneRIF Biological Term Annotations	1.0	null
atypic	GeneRIF Biological Term Annotations	1.0	null
occurring	GeneRIF Biological Term Annotations	1.0	null
C2BBE1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02562
CHD7_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SUPHD1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63409
FOS_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mds	GeneRIF Biological Term Annotations	1.0	null
blocks	GeneRIF Biological Term Annotations	1.0	null
RAD21_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
indicator	GeneRIF Biological Term Annotations	1.0	null
transformation	GeneRIF Biological Term Annotations	1.0	null
antagonistic	GeneRIF Biological Term Annotations	1.0	null
SIN3A_PFSK-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mad1	GeneRIF Biological Term Annotations	1.0	null
SW 837	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.998611
metabolic	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_CD8 Naive Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K4me3_choroid plexus epithelial cell_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
targets	GeneRIF Biological Term Annotations	1.0	null
E2F6_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
conditions	GeneRIF Biological Term Annotations	1.0	null
lymphoblastic	GeneRIF Biological Term Annotations	1.0	null
lymphocytic	GeneRIF Biological Term Annotations	1.0	null
treating	GeneRIF Biological Term Annotations	1.0	null
SIN3A_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19078
death	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_Duodenum Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
SIN3A_PFSK-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Breast Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
H3K4me3_cardiac mesoderm_hg19_7	ENCODE Histone Modification Site Profiles	1.0	null
enzymatic	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_mononuclear cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_fibroblast of mammary gland_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
transcriptional	GeneRIF Biological Term Annotations	1.0	null
oncogene	GeneRIF Biological Term Annotations	1.0	null
malignancies	GeneRIF Biological Term Annotations	1.0	null
CTCF_cardiac muscle cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
numerous	GeneRIF Biological Term Annotations	1.0	null
finetunes	GeneRIF Biological Term Annotations	1.0	null
CHD1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TYK-NU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.68116
advanced	GeneRIF Biological Term Annotations	1.0	null
adverse	GeneRIF Biological Term Annotations	1.0	null
19895320-Table1	GeneSigDB Published Gene Signatures	1.0	null
H3K27me3_cardiac mesoderm_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
extracellular	GeneRIF Biological Term Annotations	1.0	null
aberrantly	GeneRIF Biological Term Annotations	1.0	null
modulate	GeneRIF Biological Term Annotations	1.0	null
bak1	GeneRIF Biological Term Annotations	1.0	null
decreased	GeneRIF Biological Term Annotations	1.0	null
lymphoid	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_Pancreatic Islets	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
KMS21BM	CCLE Cell Line Gene CNV Profiles	1.0	1.59667
MCF7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41588
CEBPB_IMR-90_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
comparison	GeneRIF Biological Term Annotations	1.0	null
strongly	GeneRIF Biological Term Annotations	1.0	null
targeting	GeneRIF Biological Term Annotations	1.0	null
repressing	GeneRIF Biological Term Annotations	1.0	null
circulating	GeneRIF Biological Term Annotations	1.0	null
acute	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of villous mesenchyme_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_choroid plexus epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
necrosis	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9ac_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mapkactivated	GeneRIF Biological Term Annotations	1.0	null
Carcinoma, Non-Small-Cell Lung	HuGE Navigator Gene-Phenotype Associations	1.0	null
H3K4me3_astrocyte of the cerebellum_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.865973
H3K4me3_cardiac mesoderm_hg19_4	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_epithelial cell of proximal tubule_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
DMS 454	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.953948
contain	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of skin of abdomen_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH1105	CCLE Cell Line Gene CNV Profiles	1.0	1.75986
proved	GeneRIF Biological Term Annotations	1.0	null
extending	GeneRIF Biological Term Annotations	1.0	null
downregulate	GeneRIF Biological Term Annotations	1.0	null
H3K9ac_Rectal Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
RAD21_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH2073	CCLE Cell Line Gene CNV Profiles	-1.0	-1.87334
brain	GeneRIF Biological Term Annotations	1.0	null
stem	GeneRIF Biological Term Annotations	1.0	null
MYC_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
themir125bmir99alet7c	GeneRIF Biological Term Annotations	1.0	null
EZH2_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
inflammatory	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_CD4 Memory Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K4me3_CD14-positive monocyte_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
alltransretinoic	GeneRIF Biological Term Annotations	1.0	null
pik3cd	GeneRIF Biological Term Annotations	1.0	null
degradation	GeneRIF Biological Term Annotations	1.0	null
interactive	GeneRIF Biological Term Annotations	1.0	null
CTCF_kidney epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31129
overexpression	GeneRIF Biological Term Annotations	1.0	null
promotes	GeneRIF Biological Term Annotations	1.0	null
bcl2	GeneRIF Biological Term Annotations	1.0	null
myeloid	GeneRIF Biological Term Annotations	1.0	null
CTCF_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulator	GeneRIF Biological Term Annotations	1.0	null
lupus	GeneRIF Biological Term Annotations	1.0	null
buffers	GeneRIF Biological Term Annotations	1.0	null
support	GeneRIF Biological Term Annotations	1.0	null
SMC3_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
reflecting	GeneRIF Biological Term Annotations	1.0	null
RAD21	ENCODE Transcription Factor Targets	1.0	null
REST_neural cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_Caco-2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nfkappab	GeneRIF Biological Term Annotations	1.0	null
independent	GeneRIF Biological Term Annotations	1.0	null
a20	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of gingiva_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
including	GeneRIF Biological Term Annotations	1.0	null
CTCF_WERI-Rb-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
downregulating	GeneRIF Biological Term Annotations	1.0	null
coregulate	GeneRIF Biological Term Annotations	1.0	null
REST_neural cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
degenerating	GeneRIF Biological Term Annotations	1.0	null
notch1	GeneRIF Biological Term Annotations	1.0	null
T47D	CCLE Cell Line Gene CNV Profiles	1.0	2.24349
H3K4me3_fibroblast of lung_hg19_5	ENCODE Histone Modification Site Profiles	1.0	null
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.879316
EP300_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_cardiac fibroblast_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_keratinocyte_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
irf4	GeneRIF Biological Term Annotations	1.0	null
microrna125b	GeneRIF Biological Term Annotations	1.0	null
blimp1	GeneRIF Biological Term Annotations	1.0	null
altered	GeneRIF Biological Term Annotations	1.0	null
loss	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_iPS DF 19.11	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42675
H3K9ac_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
using	GeneRIF Biological Term Annotations	1.0	null
colorectal	GeneRIF Biological Term Annotations	1.0	null
radiosensitivity	GeneRIF Biological Term Annotations	1.0	null
MEWO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19078
prognosis	GeneRIF Biological Term Annotations	1.0	null
inhibitors	GeneRIF Biological Term Annotations	1.0	null
distorted	GeneRIF Biological Term Annotations	1.0	null
H3K9ac_Colon Smooth Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
NCIH727	CCLE Cell Line Gene CNV Profiles	1.0	1.42751
H3K4me3_endothelial cell of umbilical vein_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
mad4	GeneRIF Biological Term Annotations	1.0	null
tmz	GeneRIF Biological Term Annotations	1.0	null
tacstd2	GeneRIF Biological Term Annotations	1.0	null
Ovarian Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
H3K4me3_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
rituximab	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of upper leg skin_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_cardiac mesoderm_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
pathogenesis	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_cardiac mesoderm_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mediated	GeneRIF Biological Term Annotations	1.0	null
injecting	GeneRIF Biological Term Annotations	1.0	null
tissues	GeneRIF Biological Term Annotations	1.0	null
memory	GeneRIF Biological Term Annotations	1.0	null
mir106a	GeneRIF Biological Term Annotations	1.0	null
proliferative	GeneRIF Biological Term Annotations	1.0	null
glioblastoma	GeneRIF Biological Term Annotations	1.0	null
RAD21_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
playing	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_cardiac mesoderm_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
correlation	GeneRIF Biological Term Annotations	1.0	null
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58215
astrogliosis	GeneRIF Biological Term Annotations	1.0	null
H3K9ac_Brain Cingulate Gyrus	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
lipomannan	GeneRIF Biological Term Annotations	1.0	null
POLR2A_HGPS cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SIN3A_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_Adipose Nuclei	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
nephrectomy	GeneRIF Biological Term Annotations	1.0	null
dna	GeneRIF Biological Term Annotations	1.0	null
CTCF_MCF-7_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
U266B1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27155
KATOIII	CCLE Cell Line Gene CNV Profiles	1.0	1.58753
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.844478
H3K4me3_kidney epithelial cell_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.87425
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.879316
RAD21_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cognitive	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12892_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of upper leg skin_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
induces	GeneRIF Biological Term Annotations	1.0	null
erbb3	GeneRIF Biological Term Annotations	1.0	null
stard13	GeneRIF Biological Term Annotations	1.0	null
compared	GeneRIF Biological Term Annotations	1.0	null
ovarian cancer	GAD Gene-Disease Associations	1.0	null
CDK9_knockdown_71_GSE21751	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	1.24187
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00847
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
CAMA-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.975817
SIN3A	ENCODE Transcription Factor Targets	1.0	null
RAD21_IMR-90_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
act	GeneRIF Biological Term Annotations	1.0	null
REST_SK-N-SH_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
metabolism	GeneRIF Biological Term Annotations	1.0	null
HCC366	CCLE Cell Line Gene CNV Profiles	1.0	2.0685
HDAC2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me2_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_A549_hg19_9	ENCODE Transcription Factor Binding Site Profiles	1.0	null
biomarker	GeneRIF Biological Term Annotations	1.0	null
inhibit	GeneRIF Biological Term Annotations	1.0	null
reduction	GeneRIF Biological Term Annotations	1.0	null
H3K4me2_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
RAD21_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_mononuclear cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
common	GeneRIF Biological Term Annotations	1.0	null
killer	GeneRIF Biological Term Annotations	1.0	null
HCC38	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
CTCF_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null