association	dataset	threshold value	standardized value
regulate	GeneRIF Biological Term Annotations	1.0	null
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
enhances	GeneRIF Biological Term Annotations	1.0	null
ZBTB7A_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EP300_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10664
CTCF_fibroblast of skin of abdomen_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_endothelial cell of umbilical vein_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
POLR2A_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
responsive	GeneRIF Biological Term Annotations	1.0	null
hemodynamic	GeneRIF Biological Term Annotations	1.0	null
HDAC6_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_MCF-7_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
altered	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM13977_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
prognostic	GeneRIF Biological Term Annotations	1.0	null
NCO2	CCLE Cell Line Gene CNV Profiles	1.0	1.40872
damage	GeneRIF Biological Term Annotations	1.0	null
intron	GeneRIF Biological Term Annotations	1.0	null
MAZ_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC2270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45315
line	GeneRIF Biological Term Annotations	1.0	null
POLR2A_small intestine_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
histone	GeneRIF Biological Term Annotations	1.0	null
melanoma	GeneRIF Biological Term Annotations	1.0	null
CTCF_MCF-7_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
roles	GeneRIF Biological Term Annotations	1.0	null
POLR2A_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.4605
CTCF_NB4_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ETS1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_CD14-positive monocyte_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mvd	GeneRIF Biological Term Annotations	1.0	null
constitutively	GeneRIF Biological Term Annotations	1.0	null
osteoclast	GeneRIF Biological Term Annotations	1.0	null
cystic	GeneRIF Biological Term Annotations	1.0	null
CTCF_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_brain microvascular endothelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_GM19240_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RAD21_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
monocyte	GeneRIF Biological Term Annotations	1.0	null
basis	GeneRIF Biological Term Annotations	1.0	null
CTCF_IMR-90_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
into	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12873_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SIN3A_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
shear	GeneRIF Biological Term Annotations	1.0	null
blood	GeneRIF Biological Term Annotations	1.0	null
loss	GeneRIF Biological Term Annotations	1.0	null
CTCF_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
vegf	GeneRIF Biological Term Annotations	1.0	null
CTCF_HEK293_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
tumorsuppressive	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12865_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mature	GeneRIF Biological Term Annotations	1.0	null
distinguished	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of gingiva_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAX_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
decreased	GeneRIF Biological Term Annotations	1.0	null
multivariate	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mesothelinrelated	GeneRIF Biological Term Annotations	1.0	null
mir1263p	GeneRIF Biological Term Annotations	1.0	null
POLR2A_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hippocampus	GeneRIF Biological Term Annotations	1.0	null
HMGN3	ENCODE Transcription Factor Targets	1.0	null
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856242
strongly	GeneRIF Biological Term Annotations	1.0	null
inhibits	GeneRIF Biological Term Annotations	1.0	null
CTCF_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
diabetic	GeneRIF Biological Term Annotations	1.0	null
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04901
A-427	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32618
giant	GeneRIF Biological Term Annotations	1.0	null
CTCF_MCF-7_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
megakaryocytic	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_Panc1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
peptides	GeneRIF Biological Term Annotations	1.0	null
CTCF_retinal pigment epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
node	GeneRIF Biological Term Annotations	1.0	null
resistance	GeneRIF Biological Term Annotations	1.0	null
nonesterified	GeneRIF Biological Term Annotations	1.0	null
indicating	GeneRIF Biological Term Annotations	1.0	null
fate	GeneRIF Biological Term Annotations	1.0	null
EZH2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of lung_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
predictors	GeneRIF Biological Term Annotations	1.0	null
lung	GeneRIF Biological Term Annotations	1.0	null
CTCF_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RFX5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SCC-25	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20101
CTCF_fibroblast of the aortic adventitia_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
finetunes	GeneRIF Biological Term Annotations	1.0	null
oncogenic	GeneRIF Biological Term Annotations	1.0	null
CAMA1	CCLE Cell Line Gene CNV Profiles	1.0	1.48765
EGR1	ENCODE Transcription Factor Targets	1.0	null
MAX_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
reduces	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_WI38_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.945805
pthrp	GeneRIF Biological Term Annotations	1.0	null
NR2F2_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
absence	GeneRIF Biological Term Annotations	1.0	null
myeloma	GeneRIF Biological Term Annotations	1.0	null
angiogenic	GeneRIF Biological Term Annotations	1.0	null
mellitus	GeneRIF Biological Term Annotations	1.0	null
pleural	GeneRIF Biological Term Annotations	1.0	null
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28111
POLR2A_K562_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
actively	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12874_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_G1E_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.949174
NCIH2030	CCLE Cell Line Gene CNV Profiles	-1.0	-1.77959
POLR2AphosphoS5_G1E-ER4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
bladder	GeneRIF Biological Term Annotations	1.0	null
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.910032
CREBBP	ENCODE Transcription Factor Targets	1.0	null
osteosarcoma	GeneRIF Biological Term Annotations	1.0	null
SMC3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
higher	GeneRIF Biological Term Annotations	1.0	null
regulating	GeneRIF Biological Term Annotations	1.0	null
SR786	CCLE Cell Line Gene CNV Profiles	-1.0	-2.02169
useful	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12869_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
vitro	GeneRIF Biological Term Annotations	1.0	null
multiple	GeneRIF Biological Term Annotations	1.0	null
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
SNU-484	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.980233
POLR2AphosphoS5_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
L1236	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36959
mir124	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.67759
MYC_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.02825
reduce	GeneRIF Biological Term Annotations	1.0	null
invasion	GeneRIF Biological Term Annotations	1.0	null
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01529
hsc	GeneRIF Biological Term Annotations	1.0	null
A704	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71136
CALU-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.948213
CTCF_retinal pigment epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
stroma	GeneRIF Biological Term Annotations	1.0	null
essential	GeneRIF Biological Term Annotations	1.0	null
mobilization	GeneRIF Biological Term Annotations	1.0	null
nicm	GeneRIF Biological Term Annotations	1.0	null
postmenopausal	GeneRIF Biological Term Annotations	1.0	null
EFO27	CCLE Cell Line Gene CNV Profiles	1.0	2.14267
CTCF_foreskin fibroblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
xenograft	GeneRIF Biological Term Annotations	1.0	null
abnormal	GeneRIF Biological Term Annotations	1.0	null
21205295-TableS1	GeneSigDB Published Gene Signatures	1.0	null
ets1	GeneRIF Biological Term Annotations	1.0	null
own	GeneRIF Biological Term Annotations	1.0	null
USF2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
17676974-TableS5	GeneSigDB Published Gene Signatures	1.0	null
SPIB	JASPAR Predicted Transcription Factor Targets	1.0	null
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04341
YY1_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
treatment	GeneRIF Biological Term Annotations	1.0	null
microrna126	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
VMRCRCZ	CCLE Cell Line Gene CNV Profiles	-1.0	-2.06576
CTCF_GM12873_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_astrocyte of the cerebellum_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_GM12867_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
malignant	GeneRIF Biological Term Annotations	1.0	null
plasma	GeneRIF Biological Term Annotations	1.0	null
one	GeneRIF Biological Term Annotations	1.0	null
lymphocytes	GeneRIF Biological Term Annotations	1.0	null
stromal	GeneRIF Biological Term Annotations	1.0	null
stress	GeneRIF Biological Term Annotations	1.0	null
methylationinduced	GeneRIF Biological Term Annotations	1.0	null
POLR2A_K562_hg19_9	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TGM2_KD_GSE23702_716_human_NB4 cells, 72h ATRA-induced differentiation	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Mesothelioma, Malignant	CTD Gene-Disease Associations	1.0	2.88009
improved	GeneRIF Biological Term Annotations	1.0	null
EGR1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
YY1	ENCODE Transcription Factor Targets	1.0	null
H3K36me3_Brain Anterior Caudate	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
NANOG	ENCODE Transcription Factor Targets	1.0	null
CTCF_brain microvascular endothelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mediator	GeneRIF Biological Term Annotations	1.0	null
CTCF_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
exosomal	GeneRIF Biological Term Annotations	1.0	null
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4703
CTCF_astrocyte of the cerebellum_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
downregulate	GeneRIF Biological Term Annotations	1.0	null
SW1116	CCLE Cell Line Gene CNV Profiles	1.0	1.80516
CTCF_GM06990_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsamir126	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12866_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.69764
phenotype	GeneRIF Biological Term Annotations	1.0	null
CTCF_keratinocyte_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cancerspecific	GeneRIF Biological Term Annotations	1.0	null
participates	GeneRIF Biological Term Annotations	1.0	null
RAD21_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
bcell	GeneRIF Biological Term Annotations	1.0	null
CHD1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
stroke	GeneRIF Biological Term Annotations	1.0	null
dermatomyositis	GeneRIF Biological Term Annotations	1.0	null
produced	GeneRIF Biological Term Annotations	1.0	null
TBL1XR1	ENCODE Transcription Factor Targets	1.0	null
mass	GeneRIF Biological Term Annotations	1.0	null
implying	GeneRIF Biological Term Annotations	1.0	null
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29123
dysfunction	GeneRIF Biological Term Annotations	1.0	null
mir200c	GeneRIF Biological Term Annotations	1.0	null
developing	GeneRIF Biological Term Annotations	1.0	null
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08419
alternative	GeneRIF Biological Term Annotations	1.0	null
HCC1419	CCLE Cell Line Gene CNV Profiles	1.0	1.39377
YY1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_G1E_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_epithelial cell of esophagus_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CCNT2	ENCODE Transcription Factor Targets	1.0	null
factors	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.856905
any	GeneRIF Biological Term Annotations	1.0	null
SAP30_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of lung_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
irf4	GeneRIF Biological Term Annotations	1.0	null
bronchial	GeneRIF Biological Term Annotations	1.0	null
cohorts	GeneRIF Biological Term Annotations	1.0	null
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01529
control	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_PFSK-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.948213
CTCF_choroid plexus epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HMGN3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
individuals	GeneRIF Biological Term Annotations	1.0	null
hoxa9	GeneRIF Biological Term Annotations	1.0	null
progenitors	GeneRIF Biological Term Annotations	1.0	null
inducing	GeneRIF Biological Term Annotations	1.0	null
CTCF_lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir130a	GeneRIF Biological Term Annotations	1.0	null
SUPT1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.36808
CTCF_GM12875_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2AFZ_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ebf3	GeneRIF Biological Term Annotations	1.0	null
SIRT6_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
spred1	GeneRIF Biological Term Annotations	1.0	null
local	GeneRIF Biological Term Annotations	1.0	null
BACH1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
neurons	GeneRIF Biological Term Annotations	1.0	null
nsclc	GeneRIF Biological Term Annotations	1.0	null
cancers	GeneRIF Biological Term Annotations	1.0	null
cd34	GeneRIF Biological Term Annotations	1.0	null
vcam1	GeneRIF Biological Term Annotations	1.0	null
lowest	GeneRIF Biological Term Annotations	1.0	null
repair	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_placenta_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
accurately	GeneRIF Biological Term Annotations	1.0	null
POLR2A_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of mammary gland_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
pitpnc1	GeneRIF Biological Term Annotations	1.0	null
affect	GeneRIF Biological Term Annotations	1.0	null
selected	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_small intestine_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ETS1	ENCODE Transcription Factor Targets	1.0	null
LU99	CCLE Cell Line Gene CNV Profiles	1.0	1.3303
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46922
CTCF_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_SK-N-SH_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of pedal digit skin_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856242
CTCF_GM12867_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BCL3_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CCNT2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
suppressed	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_B cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GABPA_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Carcinoma, Non-Small-Cell Lung	HuGE Navigator Gene-Phenotype Associations	1.0	null
20363096-Table3	GeneSigDB Published Gene Signatures	1.0	null
H3K27ac_Panc1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
tumour	GeneRIF Biological Term Annotations	1.0	null
CTCF_MCF-7_hg19_8	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_BE2C_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SKRC31	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6979
LXFL529	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23833
repressing	GeneRIF Biological Term Annotations	1.0	null
CTCF_A549_hg19_9	ENCODE Transcription Factor Binding Site Profiles	1.0	null
expressions	GeneRIF Biological Term Annotations	1.0	null
decrease	GeneRIF Biological Term Annotations	1.0	null
crkl	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
ets2	GeneRIF Biological Term Annotations	1.0	null
CTCF_spleen_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_GM12871_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOXA2	ENCODE Transcription Factor Targets	1.0	null
ischemic	GeneRIF Biological Term Annotations	1.0	null
chf	GeneRIF Biological Term Annotations	1.0	null
transcripts	GeneRIF Biological Term Annotations	1.0	null
endurance	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_lung_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
type	GeneRIF Biological Term Annotations	1.0	null
SNU-398	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828982
CTCF_H1-hESC_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
silenced	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-24	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.08964
plasmacytoid	GeneRIF Biological Term Annotations	1.0	null
directly	GeneRIF Biological Term Annotations	1.0	null
CTCF_Caco-2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
primirna	GeneRIF Biological Term Annotations	1.0	null
RKO	CCLE Cell Line Gene CNV Profiles	1.0	1.61388
H3K27me3_megakaryocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MXI1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
studies	GeneRIF Biological Term Annotations	1.0	null
clinical	GeneRIF Biological Term Annotations	1.0	null
stabilization	GeneRIF Biological Term Annotations	1.0	null
small	GeneRIF Biological Term Annotations	1.0	null
positive	GeneRIF Biological Term Annotations	1.0	null
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
EBF1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CHD4_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ecv304	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12878_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir5085p	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_GM06990_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
eGFP-JUNB_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
noncellautonomously	GeneRIF Biological Term Annotations	1.0	null
vegfa	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
pathological	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12866_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H716	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828982
cardinal	GeneRIF Biological Term Annotations	1.0	null
klf2	GeneRIF Biological Term Annotations	1.0	null
BICR22	CCLE Cell Line Gene CNV Profiles	1.0	1.3303
vessel	GeneRIF Biological Term Annotations	1.0	null
tissues	GeneRIF Biological Term Annotations	1.0	null
infection	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
application	GeneRIF Biological Term Annotations	1.0	null
profile	GeneRIF Biological Term Annotations	1.0	null
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.63034
ZNF263	ENCODE Transcription Factor Targets	1.0	null
NCIH211	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55039
predict	GeneRIF Biological Term Annotations	1.0	null
translation	GeneRIF Biological Term Annotations	1.0	null
correlate	GeneRIF Biological Term Annotations	1.0	null
coxsackievirus	GeneRIF Biological Term Annotations	1.0	null
LUDLU1	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
relapse	GeneRIF Biological Term Annotations	1.0	null
17875932-TableS4	GeneSigDB Published Gene Signatures	1.0	null
FOXA2_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CORL311	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43787
CAL12T	CCLE Cell Line Gene CNV Profiles	1.0	1.37846
PE/CA-PJ15	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
body	GeneRIF Biological Term Annotations	1.0	null
POLR2A_MCF-7_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
highly	GeneRIF Biological Term Annotations	1.0	null
CTCF_kidney_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
miR-targeted genes in squamous cell - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
H3K4me3_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
ZNF143_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
able	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12878_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_HL-60_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZMIZ1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_GM12873_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
crosstalk	GeneRIF Biological Term Annotations	1.0	null
impact	GeneRIF Biological Term Annotations	1.0	null
early	GeneRIF Biological Term Annotations	1.0	null
POLR2A_K562_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GOS3	CCLE Cell Line Gene CNV Profiles	1.0	1.39645
HCC1419	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.02889
THP1	CCLE Cell Line Gene CNV Profiles	1.0	1.37772
promoter	GeneRIF Biological Term Annotations	1.0	null
Breast Neoplasms	CTD Gene-Disease Associations	1.0	2.88009
rational	GeneRIF Biological Term Annotations	1.0	null
POLR2A_K562_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CAL 27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.891032
POLR2A_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE/CA-PJ15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.39146
CTCF_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
indicates	GeneRIF Biological Term Annotations	1.0	null
20028859-TableS2	GeneSigDB Published Gene Signatures	1.0	null
H3K4me1_erythroblast_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
viral	GeneRIF Biological Term Annotations	1.0	null
POLR2A_erythroblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
invasive	GeneRIF Biological Term Annotations	1.0	null
CTCF_HeLa-S3_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hypothesis	GeneRIF Biological Term Annotations	1.0	null
rna	GeneRIF Biological Term Annotations	1.0	null
LCLC103H	CCLE Cell Line Gene CNV Profiles	1.0	1.98586
camsap1	GeneRIF Biological Term Annotations	1.0	null
CTCF_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_LNCaP clone FGC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
most	GeneRIF Biological Term Annotations	1.0	null
RFX5_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZNF263_HEK293_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_BJ_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
REST_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
fatty	GeneRIF Biological Term Annotations	1.0	null
revealed	GeneRIF Biological Term Annotations	1.0	null
mir126126	GeneRIF Biological Term Annotations	1.0	null
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.888521
hematopoietic	GeneRIF Biological Term Annotations	1.0	null
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08419
BCL3	ENCODE Transcription Factor Targets	1.0	null
CTCF_GM12868_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
neovascularization	GeneRIF Biological Term Annotations	1.0	null
contributes	GeneRIF Biological Term Annotations	1.0	null
syndecan1	GeneRIF Biological Term Annotations	1.0	null
healthy	GeneRIF Biological Term Annotations	1.0	null
MYC_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
relative	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_keratinocyte_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZNF143	ENCODE Transcription Factor Targets	1.0	null
RFX5_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
forces	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
RAD21_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HELA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20101
POLR2A_A549_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_Colonic Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CTCF_cardiac muscle cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
common	GeneRIF Biological Term Annotations	1.0	null
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
mir126adam9	GeneRIF Biological Term Annotations	1.0	null
aggressiveness	GeneRIF Biological Term Annotations	1.0	null
cardiac	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12874_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRCA1_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H4K20me1_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
BCL3_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828982
VMRCLCP	CCLE Cell Line Gene CNV Profiles	-1.0	-1.56423
POLR2AphosphoS5_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAX	ENCODE Transcription Factor Targets	1.0	null
enriched	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CREB1	ENCODE Transcription Factor Targets	1.0	null
CTCF_GM12870_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
silencing	GeneRIF Biological Term Annotations	1.0	null
bone	GeneRIF Biological Term Annotations	1.0	null
progenitor	GeneRIF Biological Term Annotations	1.0	null
tissue	GeneRIF Biological Term Annotations	1.0	null
CTCF_thymus_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_astrocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
suppressive	GeneRIF Biological Term Annotations	1.0	null
CHD1	ENCODE Transcription Factor Targets	1.0	null
biological	GeneRIF Biological Term Annotations	1.0	null
make	GeneRIF Biological Term Annotations	1.0	null
19895320-Table1	GeneSigDB Published Gene Signatures	1.0	null
replication	GeneRIF Biological Term Annotations	1.0	null
CHD4	ENCODE Transcription Factor Targets	1.0	null
induced	GeneRIF Biological Term Annotations	1.0	null
tissuespecific	GeneRIF Biological Term Annotations	1.0	null
TCF12_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
trafficking	GeneRIF Biological Term Annotations	1.0	null
generated	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS2_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MXI1	ENCODE Transcription Factor Targets	1.0	null
19895320-Table2	GeneSigDB Published Gene Signatures	1.0	null
PANC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828982
cirrhosis	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAFK	ENCODE Transcription Factor Targets	1.0	null
a549	GeneRIF Biological Term Annotations	1.0	null
Colorectal Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
translational	GeneRIF Biological Term Annotations	1.0	null
chemotherapy	GeneRIF Biological Term Annotations	1.0	null
mrp1	GeneRIF Biological Term Annotations	1.0	null
contributions	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_erythroblast_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_GM10266_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_HL-60_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_GM06990_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
variants	GeneRIF Biological Term Annotations	1.0	null
breast	GeneRIF Biological Term Annotations	1.0	null
USF2_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
deacetylase	GeneRIF Biological Term Annotations	1.0	null
BACH1	ENCODE Transcription Factor Targets	1.0	null
REST_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TAL1	ENCODE Transcription Factor Targets	1.0	null
CTCF_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TAL1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cd97	GeneRIF Biological Term Annotations	1.0	null
nonsmall	GeneRIF Biological Term Annotations	1.0	null
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828982
impaired	GeneRIF Biological Term Annotations	1.0	null
NCI-H441	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828031
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.910032
CTCF_skin fibroblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_MCF-7_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
primarily	GeneRIF Biological Term Annotations	1.0	null
enhanced	GeneRIF Biological Term Annotations	1.0	null
itgax	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
macrophages	GeneRIF Biological Term Annotations	1.0	null
first	GeneRIF Biological Term Annotations	1.0	null
apoptosis	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12870_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
exerts	GeneRIF Biological Term Annotations	1.0	null
irs1	GeneRIF Biological Term Annotations	1.0	null
NUGC4	CCLE Cell Line Gene CNV Profiles	1.0	1.54816
without	GeneRIF Biological Term Annotations	1.0	null
MAX_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
complement	GeneRIF Biological Term Annotations	1.0	null
regulated	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_megakaryocyte_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_mammary epithelial cell_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
all	GeneRIF Biological Term Annotations	1.0	null
sirt1	GeneRIF Biological Term Annotations	1.0	null
CHD7_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
biologically	GeneRIF Biological Term Annotations	1.0	null
SKMEL24	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50626
diseases	GeneRIF Biological Term Annotations	1.0	null
acids	GeneRIF Biological Term Annotations	1.0	null
nodal	GeneRIF Biological Term Annotations	1.0	null
preeclampsia	GeneRIF Biological Term Annotations	1.0	null
H3K79me2_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
combining	GeneRIF Biological Term Annotations	1.0	null
endothelialenriched	GeneRIF Biological Term Annotations	1.0	null
pi3kr2	GeneRIF Biological Term Annotations	1.0	null
PML_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intercellular	GeneRIF Biological Term Annotations	1.0	null
ZNF143_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RAD21_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lack	GeneRIF Biological Term Annotations	1.0	null
mhhcall3	GeneRIF Biological Term Annotations	1.0	null
pik3r2	GeneRIF Biological Term Annotations	1.0	null
sample	GeneRIF Biological Term Annotations	1.0	null
mir140	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.54425
ang1	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
EN1	JASPAR Predicted Transcription Factor Targets	1.0	null
contribute	GeneRIF Biological Term Annotations	1.0	null
H3K9ac_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
COLO 857	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.910032
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39176
CTCF_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
absent	GeneRIF Biological Term Annotations	1.0	null
indicators	GeneRIF Biological Term Annotations	1.0	null
19503096-Figure1ab	GeneSigDB Published Gene Signatures	1.0	null
insights	GeneRIF Biological Term Annotations	1.0	null
diabeticassociated	GeneRIF Biological Term Annotations	1.0	null
TEAD4	ENCODE Transcription Factor Targets	1.0	null
H3K4me1_H1 Derived Mesenchymal Stem Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K27ac_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
PML	ENCODE Transcription Factor Targets	1.0	null
regulator	GeneRIF Biological Term Annotations	1.0	null
increase	GeneRIF Biological Term Annotations	1.0	null
CHD7	ENCODE Transcription Factor Targets	1.0	null
E2F6	ENCODE Transcription Factor Targets	1.0	null
H3K27me3_mononuclear cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_K562_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.64868
H3K36me3_CH12.LX_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
alcam	GeneRIF Biological Term Annotations	1.0	null
size	GeneRIF Biological Term Annotations	1.0	null
quantitative	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_olfactory bulb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
USF2	ENCODE Transcription Factor Targets	1.0	null
capacity	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
leukemic	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of pulmonary artery_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZBTB7A_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EP300_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
upregulation	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_cardiac mesoderm_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH1581	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68716
TCF12_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
survival	GeneRIF Biological Term Annotations	1.0	null
CUX1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RAD21_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-MES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.949174
zap70	GeneRIF Biological Term Annotations	1.0	null
EFO-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40746
FADU	CCLE Cell Line Gene CNV Profiles	1.0	1.64368
Lung Neoplasms	CTD Gene-Disease Associations	1.0	1.11255
metastatic	GeneRIF Biological Term Annotations	1.0	null
drug	GeneRIF Biological Term Annotations	1.0	null
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00102
OVTOKO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.74901
tamoxifen	GeneRIF Biological Term Annotations	1.0	null
nfkappab	GeneRIF Biological Term Annotations	1.0	null
restraining	GeneRIF Biological Term Annotations	1.0	null
RAD21_A549_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11344
CTCF_LNCaP clone FGC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_HepG2_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_MCF-7_hg19_9	ENCODE Transcription Factor Binding Site Profiles	1.0	null
features	GeneRIF Biological Term Annotations	1.0	null
identification	GeneRIF Biological Term Annotations	1.0	null
downstream	GeneRIF Biological Term Annotations	1.0	null
mmp13	GeneRIF Biological Term Annotations	1.0	null
CTCF_A549_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
erk12	GeneRIF Biological Term Annotations	1.0	null
mir9	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
T84	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62869
POLR2AphosphoS5_SK-N-MC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZBTB7A	ENCODE Transcription Factor Targets	1.0	null
POLR2AphosphoS5_G1E_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAZ	ENCODE Transcription Factor Targets	1.0	null
POLR2AphosphoS2_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2AFZ_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
dna	GeneRIF Biological Term Annotations	1.0	null
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.888521
BT20	CCLE Cell Line Gene CNV Profiles	1.0	2.09336
support	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS2_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of mammary gland_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
histology	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12801_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
17676974-TableS2	GeneSigDB Published Gene Signatures	1.0	null
embryonic	GeneRIF Biological Term Annotations	1.0	null
based	GeneRIF Biological Term Annotations	1.0	null
HDLM2	CCLE Cell Line Gene CNV Profiles	1.0	2.71538
CTCF_HGPS cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
suppressor	GeneRIF Biological Term Annotations	1.0	null
activities	GeneRIF Biological Term Annotations	1.0	null
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
akt	GeneRIF Biological Term Annotations	1.0	null
RAD21_IMR-90_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDAMB453	CCLE Cell Line Gene CNV Profiles	1.0	1.68987
PAX5	ENCODE Transcription Factor Targets	1.0	null
leucocyte	GeneRIF Biological Term Annotations	1.0	null
transcription	GeneRIF Biological Term Annotations	1.0	null
vegfsignaling	GeneRIF Biological Term Annotations	1.0	null
HCC2302	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828982
inhibited	GeneRIF Biological Term Annotations	1.0	null
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45315
POLR2A_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
detection	GeneRIF Biological Term Annotations	1.0	null
eocs	GeneRIF Biological Term Annotations	1.0	null
migration	GeneRIF Biological Term Annotations	1.0	null
demyelinated	GeneRIF Biological Term Annotations	1.0	null
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
H2AFZ_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_astrocyte of the spinal cord_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
urinary	GeneRIF Biological Term Annotations	1.0	null
atypical	GeneRIF Biological Term Annotations	1.0	null
RAD21_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
wntbetacatenin	GeneRIF Biological Term Annotations	1.0	null
serve	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12864_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cellseocs	GeneRIF Biological Term Annotations	1.0	null
hcc	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of pulmonary artery_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_K562_hg19_8	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RCOR1_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lung	GTEx Tissue Gene Expression Profiles	1.0	1.27032
CTCF_fibroblast of villous mesenchyme_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_kidney_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
recruitment	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25955
selective	GeneRIF Biological Term Annotations	1.0	null
HCFC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EGR1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of lung_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_GM12865_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
repression	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_megakaryocyte_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_heart_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
messenger	GeneRIF Biological Term Annotations	1.0	null
egfl7	GeneRIF Biological Term Annotations	1.0	null
adenomatous	GeneRIF Biological Term Annotations	1.0	null
pi3k	GeneRIF Biological Term Annotations	1.0	null
ell	GeneRIF Biological Term Annotations	1.0	null
led	GeneRIF Biological Term Annotations	1.0	null
epithelial	GeneRIF Biological Term Annotations	1.0	null
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17145
keeping	GeneRIF Biological Term Annotations	1.0	null
CTCF_A549_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pathways	GeneRIF Biological Term Annotations	1.0	null
restored	GeneRIF Biological Term Annotations	1.0	null
regardless	GeneRIF Biological Term Annotations	1.0	null
YY1_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
compared	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12891_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_GM12872_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
specific	GeneRIF Biological Term Annotations	1.0	null
differentiation	GeneRIF Biological Term Annotations	1.0	null
duodenal	GeneRIF Biological Term Annotations	1.0	null
MDAMB415	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39353
blocks	GeneRIF Biological Term Annotations	1.0	null
MCF-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.933144
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
sca1lin	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_ES-E14_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cellcycle	GeneRIF Biological Term Annotations	1.0	null
POLR2A_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NR2F2	ENCODE Transcription Factor Targets	1.0	null
SCH	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
indicated	GeneRIF Biological Term Annotations	1.0	null
megakaryopoiesis	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of the aortic adventitia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
prostate	GeneRIF Biological Term Annotations	1.0	null
CTCF_cardiac muscle cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
downregulation	GeneRIF Biological Term Annotations	1.0	null
mir1	GeneRIF Biological Term Annotations	1.0	null
natural	GeneRIF Biological Term Annotations	1.0	null
muscle	GeneRIF Biological Term Annotations	1.0	null
mir210	GeneRIF Biological Term Annotations	1.0	null
markedly	GeneRIF Biological Term Annotations	1.0	null
aml	GeneRIF Biological Term Annotations	1.0	null
COLO 794	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00799
marrow	GeneRIF Biological Term Annotations	1.0	null
mir126	GeneRIF Biological Term Annotations	1.0	null
Carcinoma, Non-Small-Cell Lung	CTD Gene-Disease Associations	1.0	2.88009
EBF1_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MYC	ENCODE Transcription Factor Targets	1.0	null
some	GeneRIF Biological Term Annotations	1.0	null
integrin	GeneRIF Biological Term Annotations	1.0	null
EFE184	CCLE Cell Line Gene CNV Profiles	1.0	2.80084
tumorsuppressor	GeneRIF Biological Term Annotations	1.0	null
they	GeneRIF Biological Term Annotations	1.0	null
pathogenesis	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_megakaryocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
correlated	GeneRIF Biological Term Annotations	1.0	null
shuttled	GeneRIF Biological Term Annotations	1.0	null
CTCF_epithelial cell of proximal tubule_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
G130	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.888521
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.66113
POLR2AphosphoS5_HCT116_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RFX5	ENCODE Transcription Factor Targets	1.0	null
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4703
SUZ12_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
microvessel	GeneRIF Biological Term Annotations	1.0	null
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856242
weeks	GeneRIF Biological Term Annotations	1.0	null
H3K4me2_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40778
CHD2	ENCODE Transcription Factor Targets	1.0	null
Breast Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
ZBTB7A_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	1.18489
HCC78	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.925454
20068076-SuppTable4	GeneSigDB Published Gene Signatures	1.0	null
advantage	GeneRIF Biological Term Annotations	1.0	null
posttranscriptional	GeneRIF Biological Term Annotations	1.0	null
19605494-TableS3	GeneSigDB Published Gene Signatures	1.0	null
SAP30	ENCODE Transcription Factor Targets	1.0	null
CTCF_GM12864_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of foreskin _hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39176
CAOV3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32596
variety	GeneRIF Biological Term Annotations	1.0	null
POLR2A_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
such	GeneRIF Biological Term Annotations	1.0	null
RKO-E6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.979007
TEAD4_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HDAC2	ENCODE Transcription Factor Targets	1.0	null
least	GeneRIF Biological Term Annotations	1.0	null
provide	GeneRIF Biological Term Annotations	1.0	null
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17145
PEER	CCLE Cell Line Gene CNV Profiles	-1.0	-2.0583
reexpression	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_PFSK-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BHLHE40	ENCODE Transcription Factor Targets	1.0	null
strategies	GeneRIF Biological Term Annotations	1.0	null
vivo	GeneRIF Biological Term Annotations	1.0	null
placental	GeneRIF Biological Term Annotations	1.0	null
H3K4me2_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_foreskin fibroblast_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
noncoding	GeneRIF Biological Term Annotations	1.0	null
insulin	GeneRIF Biological Term Annotations	1.0	null
NCI-H2803	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.74901
TCF12_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
risk	GeneRIF Biological Term Annotations	1.0	null
stem	GeneRIF Biological Term Annotations	1.0	null
renal	GeneRIF Biological Term Annotations	1.0	null
NCIH1573	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41416
antivegfa	GeneRIF Biological Term Annotations	1.0	null
provides	GeneRIF Biological Term Annotations	1.0	null
CTCF_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SMC3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_GM19238_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.977874
SIRT6	ENCODE Transcription Factor Targets	1.0	null
deregulation	GeneRIF Biological Term Annotations	1.0	null
unfavorable	GeneRIF Biological Term Annotations	1.0	null
controlling	GeneRIF Biological Term Annotations	1.0	null
NFIC_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
downregulated	GeneRIF Biological Term Annotations	1.0	null
turnover	GeneRIF Biological Term Annotations	1.0	null
review	GeneRIF Biological Term Annotations	1.0	null
mpn	GeneRIF Biological Term Annotations	1.0	null
ZBTB7A_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_WERI-Rb-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hematological	GeneRIF Biological Term Annotations	1.0	null
pbmc	GeneRIF Biological Term Annotations	1.0	null
upregulated	GeneRIF Biological Term Annotations	1.0	null
mitochondrial	GeneRIF Biological Term Annotations	1.0	null
ELF1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
20406893-Table1b	GeneSigDB Published Gene Signatures	1.0	null
express	GeneRIF Biological Term Annotations	1.0	null
RAD21_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
negative	GeneRIF Biological Term Annotations	1.0	null
POLR2A_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
behavior	GeneRIF Biological Term Annotations	1.0	null
MAZ_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
having	GeneRIF Biological Term Annotations	1.0	null
underexpression	GeneRIF Biological Term Annotations	1.0	null
sox2	GeneRIF Biological Term Annotations	1.0	null
tnfalpha	GeneRIF Biological Term Annotations	1.0	null
atheroprotective	GeneRIF Biological Term Annotations	1.0	null
marker	GeneRIF Biological Term Annotations	1.0	null
CTCF_bronchial epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
attenuating	GeneRIF Biological Term Annotations	1.0	null
REST	ENCODE Transcription Factor Targets	1.0	null
CTCF_K562_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
miR-targeted genes in lymphocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
CTCF_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
stage	GeneRIF Biological Term Annotations	1.0	null
ischaemia	GeneRIF Biological Term Annotations	1.0	null
erythropoiesis	GeneRIF Biological Term Annotations	1.0	null
NFIC	ENCODE Transcription Factor Targets	1.0	null
CTCF_HEK293_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
sclerosis	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
fat	GeneRIF Biological Term Annotations	1.0	null
irf1	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS2_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ang2	GeneRIF Biological Term Annotations	1.0	null
pancreatic	GeneRIF Biological Term Annotations	1.0	null
CTCF_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_HepG2_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_WERI-Rb-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
susceptible	GeneRIF Biological Term Annotations	1.0	null
significant	GeneRIF Biological Term Annotations	1.0	null
untranslated	GeneRIF Biological Term Annotations	1.0	null
obtained	GeneRIF Biological Term Annotations	1.0	null
MYC_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RAD21	ENCODE Transcription Factor Targets	1.0	null
CTCF_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ems	GeneRIF Biological Term Annotations	1.0	null
mir126mediated	GeneRIF Biological Term Annotations	1.0	null
alteration	GeneRIF Biological Term Annotations	1.0	null
A172	CCLE Cell Line Gene CNV Profiles	1.0	1.593
CTCF_bronchial epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZBTB33_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
dnmt1	GeneRIF Biological Term Annotations	1.0	null
SNU1076	CCLE Cell Line Gene CNV Profiles	1.0	1.82189
ZMIZ1	ENCODE Transcription Factor Targets	1.0	null
NCI-H1581	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34549
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
soluble	GeneRIF Biological Term Annotations	1.0	null
prediction	GeneRIF Biological Term Annotations	1.0	null
CTCF_Caco-2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
crk	GeneRIF Biological Term Annotations	1.0	null
POLR2A_endothelial cell of umbilical vein_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_mammary epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
familial	GeneRIF Biological Term Annotations	1.0	null
LXF289	CCLE Cell Line Gene CNV Profiles	1.0	1.41858
targets	GeneRIF Biological Term Annotations	1.0	null
downregulating	GeneRIF Biological Term Annotations	1.0	null
adam9	GeneRIF Biological Term Annotations	1.0	null
RAD21_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_SK-N-SH_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
partly	GeneRIF Biological Term Annotations	1.0	null
Myocardial Reperfusion Injury	CTD Gene-Disease Associations	1.0	2.88009
POLR2A_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
prognosis	GeneRIF Biological Term Annotations	1.0	null
direct	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12875_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRCA1	ENCODE Transcription Factor Targets	1.0	null
H3K4me3_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
NR2F2_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
inhibition	GeneRIF Biological Term Annotations	1.0	null
TBL1XR1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
crc	GeneRIF Biological Term Annotations	1.0	null
modulates	GeneRIF Biological Term Annotations	1.0	null
processing	GeneRIF Biological Term Annotations	1.0	null
let7b	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12872_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
their	GeneRIF Biological Term Annotations	1.0	null
SU.86.86	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25955
esophageal	GeneRIF Biological Term Annotations	1.0	null
repress	GeneRIF Biological Term Annotations	1.0	null
PECAPJ15	CCLE Cell Line Gene CNV Profiles	1.0	2.03318
mirnamediated	GeneRIF Biological Term Annotations	1.0	null
modulate	GeneRIF Biological Term Annotations	1.0	null
exosomes	GeneRIF Biological Term Annotations	1.0	null
HDAC2_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
proinflammatory	GeneRIF Biological Term Annotations	1.0	null
CUX1	ENCODE Transcription Factor Targets	1.0	null
G112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828982
lead	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ZBTB7A_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JUND	ENCODE Transcription Factor Targets	1.0	null
overexpression	GeneRIF Biological Term Annotations	1.0	null
CTCF_foreskin fibroblast_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
CTCF_HeLa-S3_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
igf1pi3kakt	GeneRIF Biological Term Annotations	1.0	null
RAD21_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of pedal digit skin_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
samples	GeneRIF Biological Term Annotations	1.0	null
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19197
demethylation	GeneRIF Biological Term Annotations	1.0	null
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27798
H3K4me2_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
RCOR1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nonsmallcell	GeneRIF Biological Term Annotations	1.0	null
YY1_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
speculative	GeneRIF Biological Term Annotations	1.0	null
experimental	GeneRIF Biological Term Annotations	1.0	null
CTCF_keratinocyte_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
upon	GeneRIF Biological Term Annotations	1.0	null
CTCF_epithelial cell of proximal tubule_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
acts	GeneRIF Biological Term Annotations	1.0	null
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.67759
H3K36me3_ES-Bruce4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_HL-60_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Inflammation	CTD Gene-Disease Associations	1.0	1.03641
H3K36me3_G1E-ER4_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS2_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
region	GeneRIF Biological Term Annotations	1.0	null
ikba	GeneRIF Biological Term Annotations	1.0	null
GATA1_G1E_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_Panc1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
normal	GeneRIF Biological Term Annotations	1.0	null
mediating	GeneRIF Biological Term Annotations	1.0	null
ami	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS2_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
metastasis	GeneRIF Biological Term Annotations	1.0	null
rankl	GeneRIF Biological Term Annotations	1.0	null
neuroprotection	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_megakaryocyte_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_T47D_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
active	GeneRIF Biological Term Annotations	1.0	null
Neovascularization, Pathologic	HuGE Navigator Gene-Phenotype Associations	1.0	null
RC-K8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31966
mir126rhoarock	GeneRIF Biological Term Annotations	1.0	null
vascular	GeneRIF Biological Term Annotations	1.0	null
proliferation	GeneRIF Biological Term Annotations	1.0	null
concentrations	GeneRIF Biological Term Annotations	1.0	null
hoxa1	GeneRIF Biological Term Annotations	1.0	null
POLR2A_A549_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH1876	CCLE Cell Line Gene CNV Profiles	1.0	1.8536
SMC3_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EP300	ENCODE Transcription Factor Targets	1.0	null
only	GeneRIF Biological Term Annotations	1.0	null
ME1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.5188
POLR2AphosphoS5_HCT116_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RAD21_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25845
CHD2_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_brain_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
ELF1_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
tumors	GeneRIF Biological Term Annotations	1.0	null
maturation	GeneRIF Biological Term Annotations	1.0	null
conditions	GeneRIF Biological Term Annotations	1.0	null
ELF1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsamir518b	GeneRIF Biological Term Annotations	1.0	null
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.922232
three	GeneRIF Biological Term Annotations	1.0	null
mediated	GeneRIF Biological Term Annotations	1.0	null
biomarker	GeneRIF Biological Term Annotations	1.0	null
diminished	GeneRIF Biological Term Annotations	1.0	null
CTCF_medulloblastoma_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
strong	GeneRIF Biological Term Annotations	1.0	null
properties	GeneRIF Biological Term Annotations	1.0	null
microenvironment	GeneRIF Biological Term Annotations	1.0	null
plac1	GeneRIF Biological Term Annotations	1.0	null
protocols	GeneRIF Biological Term Annotations	1.0	null
EGR1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
colorectal	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
targeting	GeneRIF Biological Term Annotations	1.0	null
part	GeneRIF Biological Term Annotations	1.0	null
BHLHE40_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mmp7	GeneRIF Biological Term Annotations	1.0	null
RAD21_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_H54_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RAD21_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
diabetes	GeneRIF Biological Term Annotations	1.0	null
MAX_NB4_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO 201	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01529
POLR2A_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CREBBP_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_A549_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_cardiac fibroblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_pancreas_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
dysregulated	GeneRIF Biological Term Annotations	1.0	null
Lung Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
circulation	GeneRIF Biological Term Annotations	1.0	null
T98G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828982
vegfpi3kakt	GeneRIF Biological Term Annotations	1.0	null
CTCF_MCF-7_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCFC1	ENCODE Transcription Factor Targets	1.0	null
including	GeneRIF Biological Term Annotations	1.0	null
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.04921
lrp6	GeneRIF Biological Term Annotations	1.0	null
cxcr4	GeneRIF Biological Term Annotations	1.0	null
synergism	GeneRIF Biological Term Annotations	1.0	null
snp	GeneRIF Biological Term Annotations	1.0	null
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23833
20054351-Table2	GeneSigDB Published Gene Signatures	1.0	null
gastric	GeneRIF Biological Term Annotations	1.0	null
correlates	GeneRIF Biological Term Annotations	1.0	null
subjects	GeneRIF Biological Term Annotations	1.0	null
tumorendothelial	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of foreskin _hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
setd5	GeneRIF Biological Term Annotations	1.0	null
pediatric	GeneRIF Biological Term Annotations	1.0	null
axis	GeneRIF Biological Term Annotations	1.0	null
appeared	GeneRIF Biological Term Annotations	1.0	null
KDM5B_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92332
known	GeneRIF Biological Term Annotations	1.0	null
shwo	GeneRIF Biological Term Annotations	1.0	null
reduced	GeneRIF Biological Term Annotations	1.0	null
POLR2A_HGPS cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAZ_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
each	GeneRIF Biological Term Annotations	1.0	null
CFPAC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60438
17683608-TableS2	GeneSigDB Published Gene Signatures	1.0	null
member	GeneRIF Biological Term Annotations	1.0	null
fibrosis	GeneRIF Biological Term Annotations	1.0	null
ZBTB7A_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10664
ELF1	ENCODE Transcription Factor Targets	1.0	null
sdf1	GeneRIF Biological Term Annotations	1.0	null
initial	GeneRIF Biological Term Annotations	1.0	null
thus	GeneRIF Biological Term Annotations	1.0	null
ML-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40746
CTCF_choroid plexus epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_liver_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.980233
tumournodemetastasis	GeneRIF Biological Term Annotations	1.0	null
onset	GeneRIF Biological Term Annotations	1.0	null
colon	GeneRIF Biological Term Annotations	1.0	null
cross	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_GM19239_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
myeloid	GeneRIF Biological Term Annotations	1.0	null
CTCF_endothelial cell of umbilical vein_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
combined	GeneRIF Biological Term Annotations	1.0	null
CTCF_kidney epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.949174
TCF12	ENCODE Transcription Factor Targets	1.0	null
different	GeneRIF Biological Term Annotations	1.0	null
CTCF_epithelial cell of esophagus_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
predictor	GeneRIF Biological Term Annotations	1.0	null
CTCF_A549_hg19_10	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
density	GeneRIF Biological Term Annotations	1.0	null
CTCF_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NFIC_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_Panc1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856242
CTCF_WI38_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
19895320-Table3	GeneSigDB Published Gene Signatures	1.0	null
CTCF_A549_hg19_8	ENCODE Transcription Factor Binding Site Profiles	1.0	null
level	GeneRIF Biological Term Annotations	1.0	null
predicted	GeneRIF Biological Term Annotations	1.0	null
IGR1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.65122
H3K4me1_heart_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
did	GeneRIF Biological Term Annotations	1.0	null
CTCF_HCT116_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_kidney_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_GM12865_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ECGI10	CCLE Cell Line Gene CNV Profiles	1.0	2.02501
encoded	GeneRIF Biological Term Annotations	1.0	null
LCLC-103H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14084
slc7a5	GeneRIF Biological Term Annotations	1.0	null
Anemia	CTD Gene-Disease Associations	1.0	1.02858
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.844619
more	GeneRIF Biological Term Annotations	1.0	null
HOP-92	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.865185
outcomes	GeneRIF Biological Term Annotations	1.0	null
GABPA_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of lung_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_embryonic fibroblast_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
talk	GeneRIF Biological Term Annotations	1.0	null
subtypes	GeneRIF Biological Term Annotations	1.0	null
CTCF_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
adm	GeneRIF Biological Term Annotations	1.0	null
HDAC6	ENCODE Transcription Factor Targets	1.0	null
CTCF_fibroblast of skin of abdomen_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
closely	GeneRIF Biological Term Annotations	1.0	null
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04901
POLR2A	ENCODE Transcription Factor Targets	1.0	null
spleen	GTEx Tissue Gene Expression Profiles	1.0	1.57352
JUND_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
overall	GeneRIF Biological Term Annotations	1.0	null
related	GeneRIF Biological Term Annotations	1.0	null
intronic	GeneRIF Biological Term Annotations	1.0	null
pbmcs	GeneRIF Biological Term Annotations	1.0	null
key	GeneRIF Biological Term Annotations	1.0	null
odds	GeneRIF Biological Term Annotations	1.0	null
plk2	GeneRIF Biological Term Annotations	1.0	null
exercise	GeneRIF Biological Term Annotations	1.0	null
ZNF143_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RCOR1	ENCODE Transcription Factor Targets	1.0	null
outcome	GeneRIF Biological Term Annotations	1.0	null
evident	GeneRIF Biological Term Annotations	1.0	null
BHLHE40_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
biomarkers	GeneRIF Biological Term Annotations	1.0	null
release	GeneRIF Biological Term Annotations	1.0	null
functions	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_cardiac mesoderm_hg19_7	ENCODE Histone Modification Site Profiles	1.0	null
RAD21_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_endothelial cell of umbilical vein_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
ZNF143_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_HeLa-S3_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TBL1XR1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_kidney epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RKO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.979007
inflammatory	GeneRIF Biological Term Annotations	1.0	null
POLR2A_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
suppressing	GeneRIF Biological Term Annotations	1.0	null
POLR2A_MEL cell line_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cvb3	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of gingiva_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_megakaryocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GATA1	ENCODE Transcription Factor Targets	1.0	null
proangiogenic	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_Panc1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_GM12892_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
providing	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12868_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04341
POLR2AphosphoS2_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GABPA	ENCODE Transcription Factor Targets	1.0	null
E2F6_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EGR1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
p85beta	GeneRIF Biological Term Annotations	1.0	null
genetic	GeneRIF Biological Term Annotations	1.0	null
epcs	GeneRIF Biological Term Annotations	1.0	null
microrna	GeneRIF Biological Term Annotations	1.0	null
EBF1	ENCODE Transcription Factor Targets	1.0	null
CTCF_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
analyses	GeneRIF Biological Term Annotations	1.0	null
occurs	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of upper leg skin_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir24	GeneRIF Biological Term Annotations	1.0	null
distinct	GeneRIF Biological Term Annotations	1.0	null
differentially	GeneRIF Biological Term Annotations	1.0	null
mirna126	GeneRIF Biological Term Annotations	1.0	null
squamous	GeneRIF Biological Term Annotations	1.0	null
micrornas	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12871_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
acute	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12872_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EP300_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mesothelioma	GeneRIF Biological Term Annotations	1.0	null
NCIH1435	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60438
mir335	GeneRIF Biological Term Annotations	1.0	null
mir125b	GeneRIF Biological Term Annotations	1.0	null
clinicopathological	GeneRIF Biological Term Annotations	1.0	null
NANOG_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
smc	GeneRIF Biological Term Annotations	1.0	null
event	GeneRIF Biological Term Annotations	1.0	null
mir1265p	GeneRIF Biological Term Annotations	1.0	null
MAFK_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me2_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
recent	GeneRIF Biological Term Annotations	1.0	null
within	GeneRIF Biological Term Annotations	1.0	null
TEAD4_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hypertensive	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
icm	GeneRIF Biological Term Annotations	1.0	null
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.949174
outgrowth	GeneRIF Biological Term Annotations	1.0	null
parathyroid	GeneRIF Biological Term Annotations	1.0	null
promoting	GeneRIF Biological Term Annotations	1.0	null
RCOR1_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2AFZ_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of villous mesenchyme_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_keratinocyte_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ARID3A	ENCODE Transcription Factor Targets	1.0	null
mediate	GeneRIF Biological Term Annotations	1.0	null
circulating	GeneRIF Biological Term Annotations	1.0	null
approach	GeneRIF Biological Term Annotations	1.0	null
MAX_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RH18	CCLE Cell Line Gene CNV Profiles	-1.0	-1.74562
independent	GeneRIF Biological Term Annotations	1.0	null
CTCF_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KP4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01418
angiogenesis	GeneRIF Biological Term Annotations	1.0	null
mir10a	GeneRIF Biological Term Annotations	1.0	null
secreted	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
KPL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.16457
wrch1	GeneRIF Biological Term Annotations	1.0	null
polyposis	GeneRIF Biological Term Annotations	1.0	null
MAZ_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_BE2C_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EGR1_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
ratio	GeneRIF Biological Term Annotations	1.0	null
SNU349	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58159
CTCF_fibroblast of lung_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BICR 78	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15905
meal	GeneRIF Biological Term Annotations	1.0	null
mirnas	GeneRIF Biological Term Annotations	1.0	null
pivotal	GeneRIF Biological Term Annotations	1.0	null
RAD21_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
carcinogenesis	GeneRIF Biological Term Annotations	1.0	null
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
appears	GeneRIF Biological Term Annotations	1.0	null
CTCF_HepG2_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
adjuvant	GeneRIF Biological Term Annotations	1.0	null
CTCF_A549_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
resulted	GeneRIF Biological Term Annotations	1.0	null
suggesting	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_B cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SIN3A	ENCODE Transcription Factor Targets	1.0	null
HCC461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828982
CTCF_GM10248_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55328
genesis	GeneRIF Biological Term Annotations	1.0	null
cervical	GeneRIF Biological Term Annotations	1.0	null
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32618
cellular	GeneRIF Biological Term Annotations	1.0	null
angiomirs	GeneRIF Biological Term Annotations	1.0	null
inhibit	GeneRIF Biological Term Annotations	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
whereas	GeneRIF Biological Term Annotations	1.0	null
MOLM6	CCLE Cell Line Gene CNV Profiles	1.0	1.75219
ELF1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir20b	GeneRIF Biological Term Annotations	1.0	null
CHD2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZBTB33	ENCODE Transcription Factor Targets	1.0	null
endothelium	GeneRIF Biological Term Annotations	1.0	null
candidate	GeneRIF Biological Term Annotations	1.0	null
image	GeneRIF Biological Term Annotations	1.0	null
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17044
CORL24	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51354
suppression	GeneRIF Biological Term Annotations	1.0	null
layer	GeneRIF Biological Term Annotations	1.0	null
CTCF_HCT116_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
inhibitor	GeneRIF Biological Term Annotations	1.0	null
dendritic	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12869_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir	GeneRIF Biological Term Annotations	1.0	null
PAX5_GM12892_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
humans	GeneRIF Biological Term Annotations	1.0	null
CTCF_K562_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ARID3A_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
leukemia	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12864_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAZ_IMR-90_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_G1E-ER4_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
vasculogenesis	GeneRIF Biological Term Annotations	1.0	null
laryngeal	GeneRIF Biological Term Annotations	1.0	null
JHOS4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3831
MAX_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAX_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
triglycerides	GeneRIF Biological Term Annotations	1.0	null
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08419
GW 4064	CTD Gene-Chemical Interactions	1.0	null
evidence	GeneRIF Biological Term Annotations	1.0	null
hyperglycemic	GeneRIF Biological Term Annotations	1.0	null
mir21	GeneRIF Biological Term Annotations	1.0	null
CTCF_SK-N-SH_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir365	GeneRIF Biological Term Annotations	1.0	null
serum	GeneRIF Biological Term Annotations	1.0	null
neuronal	GeneRIF Biological Term Annotations	1.0	null
phosphoinositide3kinase	GeneRIF Biological Term Annotations	1.0	null
CTCF_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MKN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92332
MYC_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RAD21_SK-N-SH_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
low	GeneRIF Biological Term Annotations	1.0	null
described	GeneRIF Biological Term Annotations	1.0	null
antiinflammatory	GeneRIF Biological Term Annotations	1.0	null
lymph	GeneRIF Biological Term Annotations	1.0	null
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.948213
identifying	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM13976_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
treated	GeneRIF Biological Term Annotations	1.0	null
mirna	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_erythroblast_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
well	GeneRIF Biological Term Annotations	1.0	null
resorption	GeneRIF Biological Term Annotations	1.0	null
arrest	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_BJ_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
effects	GeneRIF Biological Term Annotations	1.0	null
CTCF_astrocyte of the spinal cord_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.82265
viability	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of upper leg skin_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
endogenous	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM20000_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
significance	GeneRIF Biological Term Annotations	1.0	null
therapeutic	GeneRIF Biological Term Annotations	1.0	null
endothelial	GeneRIF Biological Term Annotations	1.0	null
become	GeneRIF Biological Term Annotations	1.0	null
RAD21_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TEAD4_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
describes	GeneRIF Biological Term Annotations	1.0	null
transcriptional	GeneRIF Biological Term Annotations	1.0	null
status	GeneRIF Biological Term Annotations	1.0	null
laminar	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_CH12.LX_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
relationship	GeneRIF Biological Term Annotations	1.0	null
subsets	GeneRIF Biological Term Annotations	1.0	null
been	GeneRIF Biological Term Annotations	1.0	null
hypertension	GeneRIF Biological Term Annotations	1.0	null
SUZ12	ENCODE Transcription Factor Targets	1.0	null
KDM5B	ENCODE Transcription Factor Targets	1.0	null
SMC3	ENCODE Transcription Factor Targets	1.0	null
while	GeneRIF Biological Term Annotations	1.0	null
tcf3rearranged	GeneRIF Biological Term Annotations	1.0	null
CREB1_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null