association	dataset	threshold value	standardized value
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PDX1	JASPAR Predicted Transcription Factor Targets	1.0	null
H3K9me3_Fetal Brain	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Carcinoma, Non-Small-Cell Lung	HuGE Navigator Gene-Phenotype Associations	1.0	null
H3K36me3_Fetal Brain	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.961494
efficiency	GeneRIF Biological Term Annotations	1.0	null
miR-targeted genes in leukocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
MM.1S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.83608
differentiation	GeneRIF Biological Term Annotations	1.0	null
15284443-Table6	GeneSigDB Published Gene Signatures	1.0	null
H3K36me3_Pancreatic Islets	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
positive	GeneRIF Biological Term Annotations	1.0	null
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.877777
JL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42555
H3K9me3_H1 Derived Mesenchymal Stem Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04874
H3K4me2_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
T3M10	CCLE Cell Line Gene CNV Profiles	1.0	2.68901
H3K9me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
betamrna	GeneRIF Biological Term Annotations	1.0	null
ectopic	GeneRIF Biological Term Annotations	1.0	null
breast	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_Adult Liver	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K9me3_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_Adult Liver	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
HDAC6_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30983
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58415
PC14	CCLE Cell Line Gene CNV Profiles	-1.0	-2.76795
H3K4me3_CH12.LX_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
SNU601	CCLE Cell Line Gene CNV Profiles	-1.0	-1.90797
Lung Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
H3K4me3_megakaryocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
mir376a	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
20068076-SuppTable4	GeneSigDB Published Gene Signatures	1.0	null
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.969926
H3K36me3_Brain Germinal Matrix	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.961494
invasion	GeneRIF Biological Term Annotations	1.0	null
KDM4A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KDM5A	ENCODE Transcription Factor Targets	1.0	null
TK-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11671
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01595
SW1710	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4586
NCIH1581	CCLE Cell Line Gene CNV Profiles	1.0	1.71674
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878906
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878054
LOUNH91	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32806
OVCAR5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50188
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14113
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.887537
SNU1079	CCLE Cell Line Gene CNV Profiles	-1.0	-2.3159
hepatocellular	GeneRIF Biological Term Annotations	1.0	null
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01113
H3K9me3_fibroblast of lung_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
SNU1272	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34354
H3K9me3_NT2-D1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
EZH2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878906
SNU-638	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.06025
H4K8ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
A704	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71389
H3K36me3_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HMGN3	ENCODE Transcription Factor Targets	1.0	null
present	GeneRIF Biological Term Annotations	1.0	null
tgfbetacjun	GeneRIF Biological Term Annotations	1.0	null
HUH-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878054
H3K4me1_embryonic fibroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
SNU-398	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58415
H3K9me3_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCIH3255	CCLE Cell Line Gene CNV Profiles	1.0	1.66137
TE-6	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
PAX5_OE_GDS4978_547_human_L428	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
NCI-H1304	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
oncogene	GeneRIF Biological Term Annotations	1.0	null
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44991
SW 48	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14102
mammals	GeneRIF Biological Term Annotations	1.0	null
migration	GeneRIF Biological Term Annotations	1.0	null
HCC4006	CCLE Cell Line Gene CNV Profiles	1.0	1.55497
PRRX2	JASPAR Predicted Transcription Factor Targets	1.0	null
mir652	GeneRIF Biological Term Annotations	1.0	null
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.846488
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
KNS81	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43119
nodal	GeneRIF Biological Term Annotations	1.0	null
SF268	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.18633
Breast Neoplasms	CTD Gene-Disease Associations	1.0	2.88009
abilities	GeneRIF Biological Term Annotations	1.0	null
KDM4A	ENCODE Transcription Factor Targets	1.0	null
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24655
BICR16	CCLE Cell Line Gene CNV Profiles	1.0	2.19106
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.969926
H3K9me3_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
EJM	CCLE Cell Line Gene CNV Profiles	1.0	2.78169
H3K9me3_megakaryocyte_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.57272
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.877777
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1934
SNU-601	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43944
H3K9me3_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
MDA-MB-468	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878054
H3K4me3_G1E_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1934
GR-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.825177
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01595
H3K4me1_liver_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
RBBP5	ENCODE Transcription Factor Targets	1.0	null
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03486
H3K4me3_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
process	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_CD34 Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
L-363	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.05962
H3K4me1_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K9me3_Rectal Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
NCI-H1694	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
SKMEL1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.72184
H3K9me3_brain_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
U138MG	CCLE Cell Line Gene CNV Profiles	-1.0	-2.04441
mir433	GeneRIF Biological Term Annotations	1.0	null
AGS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24902
abnormal placental transport	MGI Mouse Phenotype Associations 2023	1.0	null
Adenocarcinoma	CTD Gene-Disease Associations	1.0	1.02559
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.969926
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43944
testicular	GeneRIF Biological Term Annotations	1.0	null
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01595
SAP30_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H2052	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878054
blimp1	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_G1E_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
origin	GeneRIF Biological Term Annotations	1.0	null
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44991
H3K4me1_G1E_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_CH12.LX_mm9_5	ENCODE Histone Modification Site Profiles	1.0	null
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44991
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.825177
encoding	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04874
HCC4006	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42572
18308931-Table3	GeneSigDB Published Gene Signatures	1.0	null
fetal growth retardation	MGI Mouse Phenotype Associations 2023	1.0	null
H3K79me2_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
JHH-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43944
H3K79me2_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
feedback	GeneRIF Biological Term Annotations	1.0	null
HCC1319	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.58029
H3K9me3_Breast Myoepithelial Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13806
NCIH2141	CCLE Cell Line Gene CNV Profiles	1.0	2.07201
JIMT1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.22326
POLR2AphosphoS2_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU1076	CCLE Cell Line Gene CNV Profiles	1.0	1.37084
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43944
H3K27me3_megakaryocyte_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
diffuse	GeneRIF Biological Term Annotations	1.0	null
MELJUSO	CCLE Cell Line Gene CNV Profiles	-1.0	-1.87686
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24738
SCC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24902
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.877777
H3K9me3_erythroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.12776
large	GeneRIF Biological Term Annotations	1.0	null
translational	GeneRIF Biological Term Annotations	1.0	null
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878054
POLR2A_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal placenta fetal blood space morphology	MGI Mouse Phenotype Associations 2023	1.0	null
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19479
COLO 794	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.930624
KDM5B_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TE-10	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
POLR2A_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9me3_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
chondrocytes	GeneRIF Biological Term Annotations	1.0	null
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.864737
respectively	GeneRIF Biological Term Annotations	1.0	null
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.877777
common	GeneRIF Biological Term Annotations	1.0	null
inhibits	GeneRIF Biological Term Annotations	1.0	null
K029AX	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47608
loci	GeneRIF Biological Term Annotations	1.0	null
SF539	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.973803
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878906
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04874
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24902
HDAC6	ENCODE Transcription Factor Targets	1.0	null
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24738
H3K4me3_H1 BMP4 Derived Mesendoderm Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
LN443	CCLE Cell Line Gene CNV Profiles	1.0	1.34938
OSC-19	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
JL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.94139
proliferation	GeneRIF Biological Term Annotations	1.0	null
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.956088
POLR2AphosphoS5_G1E_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H716	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58415
H3K4me3_megakaryocyte_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
SCC4	CCLE Cell Line Gene CNV Profiles	1.0	1.92103
POLR2A_cortical plate_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH1437	CCLE Cell Line Gene CNV Profiles	1.0	1.63752
CTCF	ENCODE Transcription Factor Targets	1.0	null
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14113
lines	GeneRIF Biological Term Annotations	1.0	null
xbp1	GeneRIF Biological Term Annotations	1.0	null
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06996
KARPAS-422	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37199
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.946624
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30983
postnatal growth retardation	MGI Mouse Phenotype Associations 2023	1.0	null
H3K4me1_cerebellum_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24655
higher	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_megakaryocyte_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
H3K9me3_Neurosphere Cultured Cells Ganglionic Eminence Derived	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
COLO680N	CCLE Cell Line Gene CNV Profiles	1.0	1.69015
EZH2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05251
H3K36me3_brain_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_megakaryocyte_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
bcell	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_Neurosphere Cultured Cells Cortex Derived	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
osteoarthritis	GeneRIF Biological Term Annotations	1.0	null
19503096-Figure1aa	GeneSigDB Published Gene Signatures	1.0	null
HCC4011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878906
KELLY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43868
JHOM1	CCLE Cell Line Gene CNV Profiles	1.0	1.34048
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3079
first	GeneRIF Biological Term Annotations	1.0	null
nervous	GeneRIF Biological Term Annotations	1.0	null
HDAC2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MYC_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PECAPJ34CLONEC12	CCLE Cell Line Gene CNV Profiles	1.0	1.40221
G122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06996
H3K36me3_ES-E14_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KMS-12-BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42788
lymphomas	GeneRIF Biological Term Annotations	1.0	null
NCIH522	CCLE Cell Line Gene CNV Profiles	1.0	1.4856
TUHR4TKB	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43387
mir433127	GeneRIF Biological Term Annotations	1.0	null
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.946624
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.958183
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.946624
decreased birth body size	MGI Mouse Phenotype Associations 2023	1.0	null
H3K36me3_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_Adipose Nuclei	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
EM2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39173
A-375	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.825177
evolved	GeneRIF Biological Term Annotations	1.0	null
circulating	GeneRIF Biological Term Annotations	1.0	null
HCC89	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.857886
CBX3	ENCODE Transcription Factor Targets	1.0	null
bcl6	GeneRIF Biological Term Annotations	1.0	null
increased placenta weight	MGI Mouse Phenotype Associations 2023	1.0	null
COR-L47	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.1354
modulates	GeneRIF Biological Term Annotations	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878054
HMGN3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir1275p	GeneRIF Biological Term Annotations	1.0	null
OVMANA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75215
NCI-H2347	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.956088
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878054
SW 1990	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.02417
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.864737
abnormal placenta labyrinth morphology	MGI Mouse Phenotype Associations 2023	1.0	null
L363	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54519
interacting	GeneRIF Biological Term Annotations	1.0	null
HCC2935	CCLE Cell Line Gene CNV Profiles	1.0	1.4083
Prenatal Exposure Delayed Effects	CTD Gene-Disease Associations	1.0	1.03678
VMRCRCW	CCLE Cell Line Gene CNV Profiles	-1.0	-1.99773
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.89524
than	GeneRIF Biological Term Annotations	1.0	null
JIYOYE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.51755
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13965
G84	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.358
reducing	GeneRIF Biological Term Annotations	1.0	null
elucidating	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HDAC2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
correlation	GeneRIF Biological Term Annotations	1.0	null
SUM 52PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.957028
H3K4me3_G1E_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
SAP30	ENCODE Transcription Factor Targets	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
SK-MEL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.12212
BT-483	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.887537
decreased placenta weight	MGI Mouse Phenotype Associations 2023	1.0	null
H3K9me3_erythroblast_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
DMS79	CCLE Cell Line Gene CNV Profiles	1.0	1.61174
miR-targeted genes in epithelium - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
H3K9me3_fibroblast of lung_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
hsamir127	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_ES-Bruce4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K9me3_Brain Anterior Caudate	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K4me1_limb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K9me3_megakaryocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
SF268	CCLE Cell Line Gene CNV Profiles	1.0	1.61606
POLR2AphosphoS5_PFSK-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9me3_Mobilized CD34 Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
miR-targeted genes in lymphocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
mir1273p	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
SKNDZ	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33669
H3K36me3_Brain Anterior Caudate	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
HOP92	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33145
SK-CO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3146
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01595
H3K9me3_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
HDAC2	ENCODE Transcription Factor Targets	1.0	null
HCC2935	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.51551
VMRCRCZ	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34963
TE6	CCLE Cell Line Gene CNV Profiles	1.0	2.01969
hsf1_19179333_rko_colon_carcinoma_lof_human_gpl6244_gse12762	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.107627
KDM5B	ENCODE Transcription Factor Targets	1.0	null
betaf1atpase	GeneRIF Biological Term Annotations	1.0	null
neonatal lethality, incomplete penetrance	MGI Mouse Phenotype Associations 2023	1.0	null
targets	GeneRIF Biological Term Annotations	1.0	null
mapk4	GeneRIF Biological Term Annotations	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.932421
evidence	GeneRIF Biological Term Annotations	1.0	null
system	GeneRIF Biological Term Annotations	1.0	null
MKN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.877777
H4K20me1_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.877777
mir127	GeneRIF Biological Term Annotations	1.0	null
gastric	GeneRIF Biological Term Annotations	1.0	null
glioblastoma	GeneRIF Biological Term Annotations	1.0	null
posttranscriptional	GeneRIF Biological Term Annotations	1.0	null
MYC	ENCODE Transcription Factor Targets	1.0	null
kras	GeneRIF Biological Term Annotations	1.0	null
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13806
contribute	GeneRIF Biological Term Annotations	1.0	null
NCI-H2461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29226
H3K9me3_Rectal Smooth Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
POLR2A_olfactory bulb_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
A3/KAW	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24902
cascade	GeneRIF Biological Term Annotations	1.0	null
EBC1	CCLE Cell Line Gene CNV Profiles	1.0	1.49472
H3K9me3_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
regulator	GeneRIF Biological Term Annotations	1.0	null
NCIH1694	CCLE Cell Line Gene CNV Profiles	1.0	2.22951
mmp13	GeneRIF Biological Term Annotations	1.0	null
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878054
provide	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24902
CBX3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TE10	CCLE Cell Line Gene CNV Profiles	1.0	1.93904
NCIN87	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51858
several	GeneRIF Biological Term Annotations	1.0	null
factors	GeneRIF Biological Term Annotations	1.0	null
16934749-Table3	GeneSigDB Published Gene Signatures	1.0	null
POLR2A_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
central	GeneRIF Biological Term Annotations	1.0	null
loss	GeneRIF Biological Term Annotations	1.0	null
report	GeneRIF Biological Term Annotations	1.0	null
18812439-Table1	GeneSigDB Published Gene Signatures	1.0	null
BT483	CCLE Cell Line Gene CNV Profiles	1.0	1.55014
oncogenic	GeneRIF Biological Term Annotations	1.0	null
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.94139
H3K9me3_erythroblast_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
suppressor	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OVMANA	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69408
NCIH28	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48801
19503096-Figure1ab	GeneSigDB Published Gene Signatures	1.0	null