association	dataset	threshold value	standardized value
NCI-H847	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.99642
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27275
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00684
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.77725
kidney cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.083863
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.913638
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.938285
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13047
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.33277
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44097
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040751
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040686
CHP-212	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.67222
SJCRH30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.872954
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.72001
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.236921
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.43886
cv-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.198109
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13009
urinary system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
cell	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060384
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.77725
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060719
plasma membrane	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
bile duct disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.261245
cytoplasmic part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
biliary tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.257358
U-698-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39648
kidney	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.856239
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05052
C3A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.99824
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22915
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.251606
urinary tract	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053814
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042042
whole body	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31533
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26996
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13009
cataract	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.409414
ileum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.249977
culture medium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.200827
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.252919
NCI-H1882	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.35678
ovary cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.082011
cell periphery	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
NAMALWA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.61477
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.76082
hepatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.32132
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041302
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055501
SK-CO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27199
eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044848
membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
membrane	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
vertebrate muscular system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.878721
SNU-719	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05411
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13944
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826813
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.228764
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14001
viscus	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
ileocecum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.112614
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053959
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052579
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80847
MEWO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83252
MDST8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.993892
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.913638
skeletal muscle	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12936
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047389
musculoskeletal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.062601
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061522
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041593
RAJI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13944
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.48528
mitochondrion	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20383
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09411
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.913638
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.86334
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.870404
NCI-H2795	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62869
G141	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05673
endocrine gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
connective tissue cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.194232
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2727
gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
malignant pleural mesothelioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.778204
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05166
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054828
liver	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056698
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27275
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1861
NCI-H2803	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1861
YAPC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00684
intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.955727
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22915
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.862975
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061205
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35136
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13009
cell culture	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.08995
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23202
IMR-32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.89993
skeletal system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
HCC2218	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.55628
KMS-28BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35801
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.71206
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.07098
toxic encephalopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.249608
sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043355
urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
culture fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.847484
intracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
muscular system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
tissues, cell types and enzyme sources	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.0758
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.224398
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35801
male reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
nucleus	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18838
fibroblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080968
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.227707
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.938285
eye and adnexa disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.04413
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.878721
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.939234
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.878721
maturity-onset diabetes of the young	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.05934
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056658
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80847
cellular_component	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
small intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.077944
excretory gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20383
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06498
NCI-H196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.99824
cos-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.58282
COV318	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13944
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.862975
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.48449
genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.212608
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.956402
cholestasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.334315
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040751
ovary	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.33156
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
hepatobiliary disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.087273
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44097
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.878721
cos cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.278603
urogenital system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
other source	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.087021
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09481
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14076
pleural cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.775341
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05411
cho cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.18588
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09411
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.43709
male reproductive gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064018
reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.939234
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.46146
fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074569
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.309335
cell part	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.562
BT-483	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.48381
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31152
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22388
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06498
lens disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.40904
cho-k1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.14564
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.955727
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00613
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.956402
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09411
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.956402
cytoplasm	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
animal	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.0758
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057635
HCC33	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09411
SK-N-AS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.67362