association	dataset	threshold value	standardized value
KG1C	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42435
resulted	GeneRIF Biological Term Annotations	1.0	null
concurrently	GeneRIF Biological Term Annotations	1.0	null
overexpression	GeneRIF Biological Term Annotations	1.0	null
ovarian	GeneRIF Biological Term Annotations	1.0	null
marrowderived	GeneRIF Biological Term Annotations	1.0	null
healthy	GeneRIF Biological Term Annotations	1.0	null
regulatory	GeneRIF Biological Term Annotations	1.0	null
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
LXFL529	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.78156
COLO 205	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.930753
SNU-423	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02278
infarct	GeneRIF Biological Term Annotations	1.0	null
into	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me2_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
dysregulation	GeneRIF Biological Term Annotations	1.0	null
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.826002
p53	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
humans	GeneRIF Biological Term Annotations	1.0	null
mir199b5p	GeneRIF Biological Term Annotations	1.0	null
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.940088
igf1r	GeneRIF Biological Term Annotations	1.0	null
express	GeneRIF Biological Term Annotations	1.0	null
liver	GeneRIF Biological Term Annotations	1.0	null
SW837	CCLE Cell Line Gene CNV Profiles	-1.0	-1.75226
JHOM2B	CCLE Cell Line Gene CNV Profiles	-1.0	-2.21515
AP-2rep	MotifMap Predicted Transcription Factor Targets	1.0	null
H3K36me3_U2OS_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC364	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51242
NCI-H1915	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.59394
recurrent	GeneRIF Biological Term Annotations	1.0	null
studies	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_cardiac mesoderm_hg19_7	ENCODE Histone Modification Site Profiles	1.0	null
H2AFZ_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_CD4+ CD25- CD45RO+ Memory Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
isolated	GeneRIF Biological Term Annotations	1.0	null
SNU283	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51824
rates	GeneRIF Biological Term Annotations	1.0	null
MAFK_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
poor	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
prolonged	GeneRIF Biological Term Annotations	1.0	null
SU-DHL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26574
H3K4me2_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_GM12865_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me2_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08962
H3K4me3_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
MDAMB175VII	CCLE Cell Line Gene CNV Profiles	-1.0	-1.633
provide	GeneRIF Biological Term Annotations	1.0	null
increasing	GeneRIF Biological Term Annotations	1.0	null
muscle	GeneRIF Biological Term Annotations	1.0	null
untranslated	GeneRIF Biological Term Annotations	1.0	null
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25434
H3K4me1_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H2066	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
PK45H	CCLE Cell Line Gene CNV Profiles	1.0	1.53814
BFTC-909	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02278
GRANTA519	CCLE Cell Line Gene CNV Profiles	-1.0	-2.06506
bone	GeneRIF Biological Term Annotations	1.0	null
MAFK_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lungscc	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
lung	GeneRIF Biological Term Annotations	1.0	null
biomarkers	GeneRIF Biological Term Annotations	1.0	null
mir206mir133b	GeneRIF Biological Term Annotations	1.0	null
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.98096
ERG-20517297-VCAP-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
insights	GeneRIF Biological Term Annotations	1.0	null
suppressed	GeneRIF Biological Term Annotations	1.0	null
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14613
colon	GeneRIF Biological Term Annotations	1.0	null
LS123	CCLE Cell Line Gene CNV Profiles	1.0	2.08685
manner	GeneRIF Biological Term Annotations	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
downregulation	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03525
TarBasePathway(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50576
infarction	GeneRIF Biological Term Annotations	1.0	null
myocardium	GeneRIF Biological Term Annotations	1.0	null
SRF and miRs in Smooth Muscle Differentiation and Proliferation(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09353
SW 837	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25434
H3K4me1_Adipose Derived Mesenchymal Stem Cell Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAFK_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
villi	GeneRIF Biological Term Annotations	1.0	null
miR-targeted genes in lymphocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
downregulates	GeneRIF Biological Term Annotations	1.0	null
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02278
increases	GeneRIF Biological Term Annotations	1.0	null
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40717
oncogenic	GeneRIF Biological Term Annotations	1.0	null
QGP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.882202
cardiovascular	GeneRIF Biological Term Annotations	1.0	null
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04497
several	GeneRIF Biological Term Annotations	1.0	null
NCO2	CCLE Cell Line Gene CNV Profiles	1.0	1.33174
mainly	GeneRIF Biological Term Annotations	1.0	null
pairs	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_NT2-D1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
STAT3_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
used	GeneRIF Biological Term Annotations	1.0	null
ERG	ChEA Transcription Factor Targets	1.0	null
suppressor	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
higher	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_Stomach Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K9ac_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
inhibits	GeneRIF Biological Term Annotations	1.0	null
due	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
microrna133	GeneRIF Biological Term Annotations	1.0	null
metaanalysis	GeneRIF Biological Term Annotations	1.0	null
NCI-H1703	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.972231
NCIH28	CCLE Cell Line Gene CNV Profiles	-1.0	-1.8361
micrornamrna	GeneRIF Biological Term Annotations	1.0	null
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.858015
indicated	GeneRIF Biological Term Annotations	1.0	null
hormoneinsensitive	GeneRIF Biological Term Annotations	1.0	null
KM12	CCLE Cell Line Gene CNV Profiles	1.0	1.6448
H3K4me1_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
colorectal	GeneRIF Biological Term Annotations	1.0	null
fetal	GeneRIF Biological Term Annotations	1.0	null
NCI-H1963	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
ZR7530	CCLE Cell Line Gene CNV Profiles	-1.0	-1.8453
DU 145	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.61229
timedependent	GeneRIF Biological Term Annotations	1.0	null
mir1mir133a	GeneRIF Biological Term Annotations	1.0	null
vkorc1	GeneRIF Biological Term Annotations	1.0	null
invasion	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
FXR	MotifMap Predicted Transcription Factor Targets	1.0	null
stages	GeneRIF Biological Term Annotations	1.0	null
targets	GeneRIF Biological Term Annotations	1.0	null
transfected	GeneRIF Biological Term Annotations	1.0	null
targeting	GeneRIF Biological Term Annotations	1.0	null
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08962
compared	GeneRIF Biological Term Annotations	1.0	null
serves	GeneRIF Biological Term Annotations	1.0	null
circulating	GeneRIF Biological Term Annotations	1.0	null
oncogenesis	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35488
POLR2A_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
miR-targeted genes in squamous cell - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
SW1573	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43129
H3K4me3_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
E2F4_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
observed	GeneRIF Biological Term Annotations	1.0	null
SJCRH30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.935481
SNU-182	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.930753
no abnormal phenotype detected	MGI Mouse Phenotype Associations 2023	1.0	null
treatment	GeneRIF Biological Term Annotations	1.0	null
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67506
MHHCALL2	CCLE Cell Line Gene CNV Profiles	1.0	1.58928
tumorsuppressive	GeneRIF Biological Term Annotations	1.0	null
significance	GeneRIF Biological Term Annotations	1.0	null
hlag	GeneRIF Biological Term Annotations	1.0	null
profile	GeneRIF Biological Term Annotations	1.0	null
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03438
clinical	GeneRIF Biological Term Annotations	1.0	null
MYC_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cancers	GeneRIF Biological Term Annotations	1.0	null
STAT3_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOS_MCF 10A_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
20054351-Table2	GeneSigDB Published Gene Signatures	1.0	null
promoted	GeneRIF Biological Term Annotations	1.0	null
HCC1395	CCLE Cell Line Gene CNV Profiles	1.0	1.34679
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.880602
H3K27ac_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
evidence	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.33186
lim	GeneRIF Biological Term Annotations	1.0	null
H3K4me2_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
NCI-H358	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03525
miR-targeted genes in epithelium - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
differentially	GeneRIF Biological Term Annotations	1.0	null
MYC	ENCODE Transcription Factor Targets	1.0	null
hearts	GeneRIF Biological Term Annotations	1.0	null
mir133aregulated	GeneRIF Biological Term Annotations	1.0	null
downregulated	GeneRIF Biological Term Annotations	1.0	null
antitumor	GeneRIF Biological Term Annotations	1.0	null
NCIH69	CCLE Cell Line Gene CNV Profiles	1.0	1.77084
COLO 206F	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13801
FOS_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
squamous	GeneRIF Biological Term Annotations	1.0	null
prognosis	GeneRIF Biological Term Annotations	1.0	null
biosynthesis	GeneRIF Biological Term Annotations	1.0	null
acute	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
adults	GeneRIF Biological Term Annotations	1.0	null
POLR2A_HeLa-S3_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
miRs in Muscle Cell Differentiation(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
therapeutics	GeneRIF Biological Term Annotations	1.0	null
HUG1N	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
describe	GeneRIF Biological Term Annotations	1.0	null
diseases	GeneRIF Biological Term Annotations	1.0	null
esophageal	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.831739
PATU8988S	CCLE Cell Line Gene CNV Profiles	1.0	2.27738
p10	GeneRIF Biological Term Annotations	1.0	null
region	GeneRIF Biological Term Annotations	1.0	null
sh3	GeneRIF Biological Term Annotations	1.0	null
serum	GeneRIF Biological Term Annotations	1.0	null
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.930753
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08962
restoration	GeneRIF Biological Term Annotations	1.0	null
GR	MotifMap Predicted Transcription Factor Targets	1.0	null
hsamir1403prad51ap1	GeneRIF Biological Term Annotations	1.0	null
correlated	GeneRIF Biological Term Annotations	1.0	null
pathways	GeneRIF Biological Term Annotations	1.0	null
mcl1	GeneRIF Biological Term Annotations	1.0	null
reduced	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
insulin	GeneRIF Biological Term Annotations	1.0	null
repressing	GeneRIF Biological Term Annotations	1.0	null
HCC1263	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.930753
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.930753
H3K36me3_cardiac mesoderm_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
adverse	GeneRIF Biological Term Annotations	1.0	null
H3K4me2_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mhc	GeneRIF Biological Term Annotations	1.0	null
Parkinson Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
MYC_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
arpc5	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SOX10	MotifMap Predicted Transcription Factor Targets	1.0	null
presence	GeneRIF Biological Term Annotations	1.0	null
when	GeneRIF Biological Term Annotations	1.0	null
MAFF_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
il1beta	GeneRIF Biological Term Annotations	1.0	null
HL-60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58233
POLR2A	ENCODE Transcription Factor Targets	1.0	null
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15893
MAFK_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir133b	GeneRIF Biological Term Annotations	1.0	null
JHH-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02278
H3K4me3_cardiac mesoderm_hg19_8	ENCODE Histone Modification Site Profiles	1.0	null
level	GeneRIF Biological Term Annotations	1.0	null
mir328	GeneRIF Biological Term Annotations	1.0	null
KMM1	CCLE Cell Line Gene CNV Profiles	1.0	1.45929
networks	GeneRIF Biological Term Annotations	1.0	null
effect	GeneRIF Biological Term Annotations	1.0	null
A-Netherlands-602-2009(H1N1)_48Hour_None_GSE40844	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.28574
different	GeneRIF Biological Term Annotations	1.0	null
tissues	GeneRIF Biological Term Annotations	1.0	null
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
miR-targeted genes in adipocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
appears	GeneRIF Biological Term Annotations	1.0	null
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.825274
downstream	GeneRIF Biological Term Annotations	1.0	null
myocardial	GeneRIF Biological Term Annotations	1.0	null
aberrant	GeneRIF Biological Term Annotations	1.0	null
suppressing	GeneRIF Biological Term Annotations	1.0	null
POLR2A_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K79me2_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.993972
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.826002
H3K4me3_mononuclear cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
spontaneous	GeneRIF Biological Term Annotations	1.0	null
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.826002
NCIH1963	CCLE Cell Line Gene CNV Profiles	1.0	2.09003
stably	GeneRIF Biological Term Annotations	1.0	null
NCI-H2810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.880602
MicroRNAs in cardiomyocyte hypertrophy(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
suggesting	GeneRIF Biological Term Annotations	1.0	null
plasma	GeneRIF Biological Term Annotations	1.0	null
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02278
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88139
HNF4	MotifMap Predicted Transcription Factor Targets	1.0	null
class	GeneRIF Biological Term Annotations	1.0	null
OCIMY7	CCLE Cell Line Gene CNV Profiles	1.0	1.53299
hsamir145e2f3	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
WHSC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
derived	GeneRIF Biological Term Annotations	1.0	null
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.873103
MAFK_IMR-90_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC4006	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14613
reported	GeneRIF Biological Term Annotations	1.0	null
cleavage	GeneRIF Biological Term Annotations	1.0	null
chronic	GeneRIF Biological Term Annotations	1.0	null
RBBP5	ENCODE Transcription Factor Targets	1.0	null
PA-TU-8988S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.96994
15284443-Table6	GeneSigDB Published Gene Signatures	1.0	null
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
HCC4006	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34065
HS729	CCLE Cell Line Gene CNV Profiles	1.0	1.69846
RB1_KD_GSE50532_624_human_OSTEOBLASTS	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
MAFF_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
experiments	GeneRIF Biological Term Annotations	1.0	null
NCIH146	CCLE Cell Line Gene CNV Profiles	1.0	1.71171
MAFF	ENCODE Transcription Factor Targets	1.0	null
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31989
RKN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0306
mir133a	GeneRIF Biological Term Annotations	1.0	null
clusters	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21003
mir1	GeneRIF Biological Term Annotations	1.0	null
NCI-H2228	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35488
H4K20me1_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K9ac_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
possible	GeneRIF Biological Term Annotations	1.0	null
ASPC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.858015
FOS_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HUH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.858015
mirnas	GeneRIF Biological Term Annotations	1.0	null
MAFK_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
characteristics	GeneRIF Biological Term Annotations	1.0	null
537 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35396
upstream	GeneRIF Biological Term Annotations	1.0	null
overexpressing	GeneRIF Biological Term Annotations	1.0	null
SW 527	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.988369
PE/CA-PJ15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03525
SNU620	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34849
mir206	GeneRIF Biological Term Annotations	1.0	null
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04497
caspase1	GeneRIF Biological Term Annotations	1.0	null
H3K9ac_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mir133a1	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mir1393p	GeneRIF Biological Term Annotations	1.0	null
mir133	GeneRIF Biological Term Annotations	1.0	null
OCIM1	CCLE Cell Line Gene CNV Profiles	1.0	1.92938
H3K4me2_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
alitretinoin_homo sapiens_gpl6480_gse43090	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
H3K27ac_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
RI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26574
H3K4me2_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
stem	GeneRIF Biological Term Annotations	1.0	null
COR-L47	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.77912
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34776
H3K4me1_Muscle Satellite Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41048
HCC364	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31249
abortion	GeneRIF Biological Term Annotations	1.0	null
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14613
tumorigenesis	GeneRIF Biological Term Annotations	1.0	null
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25434
mir218	GeneRIF Biological Term Annotations	1.0	null
STAT3	ENCODE Transcription Factor Targets	1.0	null
hsamir133agclc	GeneRIF Biological Term Annotations	1.0	null
showed	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
frequently	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
bladder	GeneRIF Biological Term Annotations	1.0	null
CHD1	ENCODE Transcription Factor Targets	1.0	null
YAPC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.930593
NCCSTCK140	CCLE Cell Line Gene CNV Profiles	1.0	2.5717
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.85372
EZH2	ENCODE Transcription Factor Targets	1.0	null
mechanisms	GeneRIF Biological Term Annotations	1.0	null
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03525
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21003
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.825274
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
islets	GeneRIF Biological Term Annotations	1.0	null
scc	GeneRIF Biological Term Annotations	1.0	null
ectopic	GeneRIF Biological Term Annotations	1.0	null
NCIH1792	CCLE Cell Line Gene CNV Profiles	1.0	1.4975
suppress	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
cellcycle	GeneRIF Biological Term Annotations	1.0	null
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.42758
H3K4me3_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SNU-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.98178
invasive	GeneRIF Biological Term Annotations	1.0	null
PANC 04.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.27453
SKNBE2	CCLE Cell Line Gene CNV Profiles	-1.0	-2.02755
lasp1	GeneRIF Biological Term Annotations	1.0	null
identification	GeneRIF Biological Term Annotations	1.0	null
H3K9ac_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CAKI-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02278
SKCO1	CCLE Cell Line Gene CNV Profiles	1.0	1.61358
NB1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67727
upregulation	GeneRIF Biological Term Annotations	1.0	null
H3K9ac_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
diagnostic	GeneRIF Biological Term Annotations	1.0	null
DEL	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44254
HUT78	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46876
chorionchorionic	GeneRIF Biological Term Annotations	1.0	null
RL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.8174
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04497
inhibited	GeneRIF Biological Term Annotations	1.0	null
MAFK	ENCODE Transcription Factor Targets	1.0	null
mir221	GeneRIF Biological Term Annotations	1.0	null
basalintermediate	GeneRIF Biological Term Annotations	1.0	null
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31989
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.825274
direct	GeneRIF Biological Term Annotations	1.0	null
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.29239
p17	GeneRIF Biological Term Annotations	1.0	null
pc3	GeneRIF Biological Term Annotations	1.0	null
injured	GeneRIF Biological Term Annotations	1.0	null
uncoupling	GeneRIF Biological Term Annotations	1.0	null
VMRCLCD	CCLE Cell Line Gene CNV Profiles	1.0	1.5908
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03525
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34776
20406893-Table1b	GeneSigDB Published Gene Signatures	1.0	null
du145	GeneRIF Biological Term Annotations	1.0	null
markers	GeneRIF Biological Term Annotations	1.0	null
GRANTA-519	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.57767
elevated	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_cardiac mesoderm_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
arrest	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_Neurosphere Cultured Cells Cortex Derived	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29264
originate	GeneRIF Biological Term Annotations	1.0	null
parkinson's disease	GAD Gene-Disease Associations	1.0	null
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.903244
ofthe	GeneRIF Biological Term Annotations	1.0	null
rescue	GeneRIF Biological Term Annotations	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13339
H3K9me1_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K27ac_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14613
directly	GeneRIF Biological Term Annotations	1.0	null
egfr	GeneRIF Biological Term Annotations	1.0	null
lines	GeneRIF Biological Term Annotations	1.0	null
FOS	ENCODE Transcription Factor Targets	1.0	null
mesenchymal	GeneRIF Biological Term Annotations	1.0	null
hnscc	GeneRIF Biological Term Annotations	1.0	null
mir499	GeneRIF Biological Term Annotations	1.0	null
hsamir1395ptop2a	GeneRIF Biological Term Annotations	1.0	null
PATU8988T	CCLE Cell Line Gene CNV Profiles	1.0	1.85048
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.858015
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04497
H3K4me1_Panc1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
LU65	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50622
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13612
PA-TU-8988T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15893
CORL95	CCLE Cell Line Gene CNV Profiles	1.0	1.37647
ucp2	GeneRIF Biological Term Annotations	1.0	null
bclxl	GeneRIF Biological Term Annotations	1.0	null
proliferation	GeneRIF Biological Term Annotations	1.0	null
KYO1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57024
microrna133a	GeneRIF Biological Term Annotations	1.0	null
NCIH2066	CCLE Cell Line Gene CNV Profiles	1.0	2.16527
miR-targeted genes in leukocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46378
JMSU1	CCLE Cell Line Gene CNV Profiles	1.0	1.49697
H3K4me1_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me2_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
biomarker	GeneRIF Biological Term Annotations	1.0	null
E2F4	ENCODE Transcription Factor Targets	1.0	null
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.32807
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.826002
H2AFZ_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.15854
suppressive	GeneRIF Biological Term Annotations	1.0	null
ptb	GeneRIF Biological Term Annotations	1.0	null
first	GeneRIF Biological Term Annotations	1.0	null
pathogenesis	GeneRIF Biological Term Annotations	1.0	null
g0g1	GeneRIF Biological Term Annotations	1.0	null
therapeutic	GeneRIF Biological Term Annotations	1.0	null
mitochondrial	GeneRIF Biological Term Annotations	1.0	null
cardiacspecific	GeneRIF Biological Term Annotations	1.0	null
KM-12	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67506
FOS_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulated	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
sensitize	GeneRIF Biological Term Annotations	1.0	null
H3K79me2_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
prostate	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
exposure	GeneRIF Biological Term Annotations	1.0	null
migration	GeneRIF Biological Term Annotations	1.0	null
UMUC3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39051
cirrhosis	GeneRIF Biological Term Annotations	1.0	null
effector	GeneRIF Biological Term Annotations	1.0	null
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
mir1423p	GeneRIF Biological Term Annotations	1.0	null
YAPC	CCLE Cell Line Gene CNV Profiles	1.0	1.39279
WHSC1	ENCODE Transcription Factor Targets	1.0	null
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PANC0813	CCLE Cell Line Gene CNV Profiles	-1.0	-2.23461
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.95727
gastric	GeneRIF Biological Term Annotations	1.0	null
KURAMOCHI	CCLE Cell Line Gene CNV Profiles	-1.0	-3.20927
H4K20me1_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CHD1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
probably	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me2_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H2AFZ_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PL45	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35765
H2AFZ_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KPNSI9S	CCLE Cell Line Gene CNV Profiles	-1.0	-2.40679
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.930753
miR-targeted genes in muscle cell - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
PK-45H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.911029
COLO668	CCLE Cell Line Gene CNV Profiles	1.0	1.50606
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.15854
C170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58233
KMRC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48437
umbrella	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.825274
epidermal	GeneRIF Biological Term Annotations	1.0	null
NCI-H1648	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07993
H2AFZ_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KMS-21BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10151
H2AFZ_astrocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
highglucose	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_Penis Foreskin Fibroblast Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K4me1_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K27ac_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null