association	dataset	threshold value	standardized value
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11161
HSC-3	COSMIC Cell Line Gene CNV Profiles	1.0	2.59653
KYSE-70	COSMIC Cell Line Gene CNV Profiles	1.0	2.59653
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.502292
REST_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mcl1	GeneRIF Biological Term Annotations	1.0	null
REST_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
myoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.791877
myotonic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.477909
leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064209
EM2	CCLE Cell Line Gene CNV Profiles	1.0	1.59674
than	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.952222
parasitic protozoa infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.054944
cartilage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061259
commensal bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.108637
neuromuscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.613183
metencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063138
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.161484
mir1	GeneRIF Biological Term Annotations	1.0	null
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.61739
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.275444
Prenatal Exposure Delayed Effects	CTD Gene-Disease Associations	1.0	1.37075
REST_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
seedling	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062241
induced	GeneRIF Biological Term Annotations	1.0	null
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.22303
gas gangrene	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.431894
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2621
forebrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055623
mir133a	GeneRIF Biological Term Annotations	1.0	null
well	GeneRIF Biological Term Annotations	1.0	null
nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.227445
mir328	GeneRIF Biological Term Annotations	1.0	null
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053162
REST_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
microrna133	GeneRIF Biological Term Annotations	1.0	null
cerebral cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061256
familial atrial fibrillation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.842573
all	GeneRIF Biological Term Annotations	1.0	null
KYSE-70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2732
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.593649
cancers	GeneRIF Biological Term Annotations	1.0	null
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050951
downregulation	GeneRIF Biological Term Annotations	1.0	null
mir133ab	GeneRIF Biological Term Annotations	1.0	null
esophageal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.127032
normal phenotype	MPO Gene-Phenotype Associations	1.0	null
leg muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.287447
influences	GeneRIF Biological Term Annotations	1.0	null
CAMA-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04514
prostate cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.451813
nucleotide	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_G1E-ER4_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
tap63	GeneRIF Biological Term Annotations	1.0	null
ht-29 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.482817
KYSE150	CCLE Cell Line Gene CNV Profiles	1.0	1.48444
myocardial infarction	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.233878
dopaminergic neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.795624
plant form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059055
neuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.465416
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.967225
neurons	GeneRIF Biological Term Annotations	1.0	null
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041971
olfactory lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.083356
SNU-668	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.882748
NCIH2172	CCLE Cell Line Gene CNV Profiles	1.0	1.64425
mir185	GeneRIF Biological Term Annotations	1.0	null
sarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075903
GATA3	ENCODE Transcription Factor Targets	1.0	null
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62827
muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.946947
heart	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.511778
MicroRNAs in cardiomyocyte hypertrophy(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
p0001	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12864_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
prostate cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.386308
forelimb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.103154
miR-targeted genes in leukocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.360782
REST_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.351485
low	GeneRIF Biological Term Annotations	1.0	null
NCIH2286	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69978
MDAMB436	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40492
shown	GeneRIF Biological Term Annotations	1.0	null
healthy	GeneRIF Biological Term Annotations	1.0	null
COLO 206F	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.14478
clinical	GeneRIF Biological Term Annotations	1.0	null
COLO 792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.86597
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.36756
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
20054351-Table2	GeneSigDB Published Gene Signatures	1.0	null
after	GeneRIF Biological Term Annotations	1.0	null
deregulation	GeneRIF Biological Term Annotations	1.0	null
SNU-484	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07481
lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056499
gli1	GeneRIF Biological Term Annotations	1.0	null
extracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.122383
showed	GeneRIF Biological Term Annotations	1.0	null
neuromuscular junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.18702
tissues	GeneRIF Biological Term Annotations	1.0	null
gemcitabine	GeneRIF Biological Term Annotations	1.0	null
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.70062
Drug-Related Side Effects and Adverse Reactions	CTD Gene-Disease Associations	1.0	1.02783
substantia nigra	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.238706
esophageal	GeneRIF Biological Term Annotations	1.0	null
mirnas	GeneRIF Biological Term Annotations	1.0	null
reduced	GeneRIF Biological Term Annotations	1.0	null
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2621
amacrine cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.214954
HCC461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27182
mirna206133b	GeneRIF Biological Term Annotations	1.0	null
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
studies	GeneRIF Biological Term Annotations	1.0	null
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.48048
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043788
overexpression	GeneRIF Biological Term Annotations	1.0	null
trypanosomiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.136344
REST_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
matrix	GeneRIF Biological Term Annotations	1.0	null
targeted	GeneRIF Biological Term Annotations	1.0	null
facioscapulohumeral muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.454847
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.33498
inhibited	GeneRIF Biological Term Annotations	1.0	null
HCC4006	CCLE Cell Line Gene CNV Profiles	-1.0	-1.84205
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
CL11	CCLE Cell Line Gene CNV Profiles	-1.0	-2.46583
lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.18151
PANC0327	CCLE Cell Line Gene CNV Profiles	1.0	1.51051
CTCF_GM12873_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.939479
lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058755
ullrich congenital muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.70434
NCI-H727	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.944047
H3K27me3_CD4 Memory Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
prostate gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.461852
transfection	GeneRIF Biological Term Annotations	1.0	null
female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046088
skeletal muscle cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064893
MG-63	COSMIC Cell Line Gene CNV Profiles	1.0	2.59653
chagas disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.181798
assessed	GeneRIF Biological Term Annotations	1.0	null
muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.498849
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.578016
shoot	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058515
colorectal adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.417337
CAMA1	CCLE Cell Line Gene CNV Profiles	1.0	1.34581
CTCF_Caco-2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RBBP5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC366	CCLE Cell Line Gene CNV Profiles	1.0	2.30294
HEP G2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.85976
IGR39	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46289
isolated	GeneRIF Biological Term Annotations	1.0	null
kidney cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.163336
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.326453
inhibits	GeneRIF Biological Term Annotations	1.0	null
hindbrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059359
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05228
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37989
H3K27me3_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
neuroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.085077
muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.553239
rnai effector complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.501881
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.102029
RH41	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40857
adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.50471
cerebellar cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.125132
ML1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47163
cardiac muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.558059
vascular tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.106942
renal	GeneRIF Biological Term Annotations	1.0	null
cerebellum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064195
atrophic muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.498849
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.366007
colonic cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.482817
internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.326067
REST_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
leg	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.120622
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.377621
REST_HCT116_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05489
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.457864
circulating	GeneRIF Biological Term Annotations	1.0	null
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.466498
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07576
bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.605709
ECGI10	CCLE Cell Line Gene CNV Profiles	1.0	1.50598
Necrosis	CTD Gene-Disease Associations	1.0	1.32637
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31072
miR-targeted genes in muscle cell - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
H3K27me3_GM06990_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
REST_PFSK-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
brain disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.185612
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
significance	GeneRIF Biological Term Annotations	1.0	null
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05228
profiling	GeneRIF Biological Term Annotations	1.0	null
bone cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.094018
becker muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.351187
upregulation	GeneRIF Biological Term Annotations	1.0	null
epidermal	GeneRIF Biological Term Annotations	1.0	null
vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.05009
negatively	GeneRIF Biological Term Annotations	1.0	null
urinary bladder cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.454126
KMS-26	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1804
four	GeneRIF Biological Term Annotations	1.0	null
renal cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.248361
NCI-H510A	COSMIC Cell Line Gene CNV Profiles	1.0	2.59653
CAOV3	CCLE Cell Line Gene CNV Profiles	1.0	1.53955
mice	GeneRIF Biological Term Annotations	1.0	null
TEAD4_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
telencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058243
ribonucleoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.059491
antiapoptotic	GeneRIF Biological Term Annotations	1.0	null
ES-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.831957
clusters	GeneRIF Biological Term Annotations	1.0	null
prostate gland cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.448346
ectopic	GeneRIF Biological Term Annotations	1.0	null
microrna133b	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.9829
REST_Panc1_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.084284
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	1.22948
mir206	GeneRIF Biological Term Annotations	1.0	null
rhabdomyosarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.381755
a-498 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.729385
H3K27me3_G1E_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
transcriptional	GeneRIF Biological Term Annotations	1.0	null
when	GeneRIF Biological Term Annotations	1.0	null
HS 940.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0128
REST_Panc1_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
horizontal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.361901
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.61991
squamous epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059997
lung cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06006
bladder	GeneRIF Biological Term Annotations	1.0	null
SNU46	CCLE Cell Line Gene CNV Profiles	1.0	1.39927
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33643
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.927541
myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.554403
NCIH510	CCLE Cell Line Gene CNV Profiles	1.0	1.86562
t-lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.099389
REST	ENCODE Transcription Factor Targets	1.0	null
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2732
rectal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.51453
describe	GeneRIF Biological Term Annotations	1.0	null
hearts	GeneRIF Biological Term Annotations	1.0	null
U-937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50407
interact	GeneRIF Biological Term Annotations	1.0	null
single	GeneRIF Biological Term Annotations	1.0	null
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1129
renal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.222699
lung fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.114179
p0007	GeneRIF Biological Term Annotations	1.0	null
mir133b	GeneRIF Biological Term Annotations	1.0	null
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949514
large intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.456732
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051242
MEC2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47214
FUOV1	CCLE Cell Line Gene CNV Profiles	1.0	1.36303
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.870006
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78357
stomach carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.428516
cervical	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM06990_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
parkinson's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.386308
bone cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.439507
mir208a	GeneRIF Biological Term Annotations	1.0	null
SPIB	JASPAR Predicted Transcription Factor Targets	1.0	null
TEAD4	ENCODE Transcription Factor Targets	1.0	null
H2AFZ_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
decreasing	GeneRIF Biological Term Annotations	1.0	null
further	GeneRIF Biological Term Annotations	1.0	null
20448109-Table2	GeneSigDB Published Gene Signatures	1.0	null
Parkinson Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
intracranial arterial disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.134864
limbic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059897
adjacent	GeneRIF Biological Term Annotations	1.0	null
atrium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.24486
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.895
extracellular region part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045012
aberrant	GeneRIF Biological Term Annotations	1.0	null
apoptosis	GeneRIF Biological Term Annotations	1.0	null
REST_GM12878_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26796
myotonic dystrophy type 1	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.491978
SU-DHL-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92017
esophageal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.36526
u2-os cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.581618
NCIH1573	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52762
gastric adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.445805
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.300679
large intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.276495
REST_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
inclusion body myositis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.319726
first	GeneRIF Biological Term Annotations	1.0	null
mir1mir133a	GeneRIF Biological Term Annotations	1.0	null
esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.136418
HSC3	CCLE Cell Line Gene CNV Profiles	1.0	2.24975
VCAP	CCLE Cell Line Gene CNV Profiles	-1.0	-1.92003
COLO668	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48216
CTCF_fibroblast of mammary gland_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
extracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.259473
colonic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.482428
erk	GeneRIF Biological Term Annotations	1.0	null
intestinal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.471539
epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.262304
roles	GeneRIF Biological Term Annotations	1.0	null
predicted	GeneRIF Biological Term Annotations	1.0	null
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.34963
JJN3	CCLE Cell Line Gene CNV Profiles	1.0	2.55037
miR-targeted genes in squamous cell - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053175
metallopeptidase9	GeneRIF Biological Term Annotations	1.0	null
REST_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lines	GeneRIF Biological Term Annotations	1.0	null
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.193719
hindlimb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.108899
reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043227
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.58934
locus	GeneRIF Biological Term Annotations	1.0	null
COLO 205	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52155
NCI-H2172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57171
colorectal	GeneRIF Biological Term Annotations	1.0	null
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.386273
risc complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.52225
stromal	GeneRIF Biological Term Annotations	1.0	null
contributed	GeneRIF Biological Term Annotations	1.0	null
thigh muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.268137
infarction	GeneRIF Biological Term Annotations	1.0	null
fetal	GeneRIF Biological Term Annotations	1.0	null
19895320-Table1	GeneSigDB Published Gene Signatures	1.0	null
cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.181798
REST_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
blood cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05216
control	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_G1E-ER4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mirna	GeneRIF Biological Term Annotations	1.0	null
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.169604
NCIH1793	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57124
U937	CCLE Cell Line Gene CNV Profiles	1.0	1.41314
samples	GeneRIF Biological Term Annotations	1.0	null
urinary bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.176584
REST_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
effector	GeneRIF Biological Term Annotations	1.0	null
sense organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063965
muscle	GeneRIF Biological Term Annotations	1.0	null
bone cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.440658
KYSE70	CCLE Cell Line Gene CNV Profiles	1.0	1.77191
REST_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62889
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.331927
transformation	GeneRIF Biological Term Annotations	1.0	null
SUDHL8	CCLE Cell Line Gene CNV Profiles	1.0	1.39739
squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.562558
positive	GeneRIF Biological Term Annotations	1.0	null
colorectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.440658
activates	GeneRIF Biological Term Annotations	1.0	null
parkinson's disease	GAD Gene-Disease Associations	1.0	null
HCC2270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.98936
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.390769
JJN-3	COSMIC Cell Line Gene CNV Profiles	1.0	2.59653
pathogenesis	GeneRIF Biological Term Annotations	1.0	null
mir145	GeneRIF Biological Term Annotations	1.0	null
mir206mir133b	GeneRIF Biological Term Annotations	1.0	null
vascular bundle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.113859
proliferation	GeneRIF Biological Term Annotations	1.0	null
latency	GeneRIF Biological Term Annotations	1.0	null
REST_Panc1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO201	CCLE Cell Line Gene CNV Profiles	1.0	1.56029
RBBP5	ENCODE Transcription Factor Targets	1.0	null
EZH2_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HDAC2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
A-375	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05228
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0437
smooth muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.159658
POLR2A	ENCODE Transcription Factor Targets	1.0	null
NCI-H650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.865397
H3K27me3_cardiac mesoderm_hg19_8	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
limb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.093509
reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.25877
anovulation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.207245
REST_HL-60_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040444
vastus lateralis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.500007
molecule	GeneRIF Biological Term Annotations	1.0	null
urinary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.657234
central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050638
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.55106
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07576
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.45356
respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.165655
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11046
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.326432
REST_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
plant vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.45374
NCIN87	CCLE Cell Line Gene CNV Profiles	-1.0	-2.34487
basal ganglia disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.355604
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.882748
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042348
REST_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.536183
mammalian	GeneRIF Biological Term Annotations	1.0	null
REST_SK-N-SH_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
inhibition	GeneRIF Biological Term Annotations	1.0	null
contribute	GeneRIF Biological Term Annotations	1.0	null
no abnormal phenotype detected	MPO Gene-Phenotype Associations	1.0	null
suggesting	GeneRIF Biological Term Annotations	1.0	null
NCI-H2110	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.883705
ht29	GeneRIF Biological Term Annotations	1.0	null
myocardial	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
gastrointestinal	GeneRIF Biological Term Annotations	1.0	null
cerebral lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058162
acute	GeneRIF Biological Term Annotations	1.0	null
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.285671
COLO792	CCLE Cell Line Gene CNV Profiles	-1.0	-1.97452
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.890737
gastric cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.576015
HCC4011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11046
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051128
mir133	GeneRIF Biological Term Annotations	1.0	null
synucleinopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.138669
cardiomyopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.164571
H3K9ac_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
HUG1N	CCLE Cell Line Gene CNV Profiles	1.0	1.57139
REST_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
REST_PFSK-1_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
fascin1	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
migration	GeneRIF Biological Term Annotations	1.0	null
metastasis	GeneRIF Biological Term Annotations	1.0	null
stomach	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.119909
NCI-H661	COSMIC Cell Line Gene CNV Profiles	1.0	2.59653
parkinsons	GeneRIF Biological Term Annotations	1.0	null
level	GeneRIF Biological Term Annotations	1.0	null
cerebrovascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.070525
tissue	GeneRIF Biological Term Annotations	1.0	null
HCC1897	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76294
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1129
NCIH661	CCLE Cell Line Gene CNV Profiles	1.0	1.83085
muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.092885
targeting	GeneRIF Biological Term Annotations	1.0	null
myoblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.598871
HCC364	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00904
EWSR1	ChEA Transcription Factor Targets	1.0	null
CTCF_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
myositis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.106676
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.359292
OKAJIMA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01095
leading	GeneRIF Biological Term Annotations	1.0	null
COLO205	CCLE Cell Line Gene CNV Profiles	1.0	2.00087
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.930621
frontal lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.072523
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068647
polymorphism	GeneRIF Biological Term Annotations	1.0	null
t-24 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.323874
IMR-32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.954047
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1804
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.882748
sw-620 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.06206
dysregulation	GeneRIF Biological Term Annotations	1.0	null
thigh	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.262986
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.959449
intestinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.453716
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14964
artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.060337
EZH2	ENCODE Transcription Factor Targets	1.0	null
coregulation	GeneRIF Biological Term Annotations	1.0	null
osteosarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.450271
ofthe	GeneRIF Biological Term Annotations	1.0	null
modulation	GeneRIF Biological Term Annotations	1.0	null
ej cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.804378
Exanthema	CTD Gene-Disease Associations	1.0	1.02077
extrinsic cardiomyopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.177851
midbrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.522405
colorectal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.593247
profile	GeneRIF Biological Term Annotations	1.0	null
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061009
CTCF_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
20406893-Table1b	GeneSigDB Published Gene Signatures	1.0	null
carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.574217
MYC	ENCODE Transcription Factor Targets	1.0	null
lung fibroblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.117212
extracellular vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.259473
brain stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079768
STAT5_01_279	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.60861
colorectal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.457109
parasitic infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.04382
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055019
bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045085
cerebral arterial disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.138253
sw620	GeneRIF Biological Term Annotations	1.0	null
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1129
REST_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1576	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.59872
CTCF_HEK293_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
il17af	GeneRIF Biological Term Annotations	1.0	null
deficient	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_Peripheral Blood Mononuclear Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.341495
gastric	GeneRIF Biological Term Annotations	1.0	null
no abnormal phenotype detected	MGI Mouse Phenotype Associations 2023	1.0	null
bcl2l2	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12873_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulating	GeneRIF Biological Term Annotations	1.0	null
membrane-bounded vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.050689
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052931
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.275444
outer plexiform layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.267791
egfr	GeneRIF Biological Term Annotations	1.0	null
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054834
REST_HCT116_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.14209
leiomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.159658
survival	GeneRIF Biological Term Annotations	1.0	null
invasion	GeneRIF Biological Term Annotations	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
REST_HL-60_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
colonic adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.422673
suppressed	GeneRIF Biological Term Annotations	1.0	null
sp1	GeneRIF Biological Term Annotations	1.0	null
exosome (rnase complex)	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.259109
CAPAN2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63124
stomach cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.357446
shortens	GeneRIF Biological Term Annotations	1.0	null
cerebral hemisphere	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059484
urinary bladder cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.613361
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1129
Thyroid Diseases	CTD Gene-Disease Associations	1.0	1.01249
uroepithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.296372
fibroblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070781
KCI-MOH1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.98936
mammalian phenotype	MPO Gene-Phenotype Associations	1.0	null
mir208	GeneRIF Biological Term Annotations	1.0	null
involvement	GeneRIF Biological Term Annotations	1.0	null
lymphoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058345
quadriceps	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.374993
homeostasis	GeneRIF Biological Term Annotations	1.0	null
poor	GeneRIF Biological Term Annotations	1.0	null
inversely	GeneRIF Biological Term Annotations	1.0	null
NTERA-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.927541
tested	GeneRIF Biological Term Annotations	1.0	null
REST_PFSK-1_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cxcr4	GeneRIF Biological Term Annotations	1.0	null
synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.097998
A549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1129
CTCF_HEK293_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pc3	GeneRIF Biological Term Annotations	1.0	null
cycle	GeneRIF Biological Term Annotations	1.0	null
retina	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.120661
CTCF_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067905
neurodegenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.170789
HCC1319	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.99037
met	GeneRIF Biological Term Annotations	1.0	null
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064644
colonic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.156575
musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.217352
TFs Regulate miRNAs related to cardiac hypertrophy(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
ovarian disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.0732
COLO-818	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.944047
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.169604
Fever	CTD Gene-Disease Associations	1.0	1.11741
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.105019
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.371245
KYSE-520	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.98936
sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065781
duchenne muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.342372
adults	GeneRIF Biological Term Annotations	1.0	null
intracranial aneurysm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.524974
prostate	GeneRIF Biological Term Annotations	1.0	null
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.59872
urinary bladder cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.613764
c2c12 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.679025
plant embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062241
heart conduction disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.286519
POLR2A_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lower	GeneRIF Biological Term Annotations	1.0	null
TT	CCLE Cell Line Gene CNV Profiles	1.0	1.98444
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.61991
JHUEM3	CCLE Cell Line Gene CNV Profiles	1.0	1.66958
coronary artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.195501
HT1197	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52194
hormoneinsensitive	GeneRIF Biological Term Annotations	1.0	null
urinary bladder cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.716828
major	GeneRIF Biological Term Annotations	1.0	null
neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.115518
breast	GeneRIF Biological Term Annotations	1.0	null
el-4 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.226667
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.72612
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33492
hypocotyl	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063156
hfl-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.669657
pc-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.51335
correlated	GeneRIF Biological Term Annotations	1.0	null
male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.3356
muscle fibre	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.435289
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052045
respectively	GeneRIF Biological Term Annotations	1.0	null
Anorexia	CTD Gene-Disease Associations	1.0	1.02485
regulated	GeneRIF Biological Term Annotations	1.0	null
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
A-431	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26435
ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055962
KURAMOCHI	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
tumorigenesis	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PK1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6031
miR-targeted genes in epithelium - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
dopamine	GeneRIF Biological Term Annotations	1.0	null
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41743
igf1r	GeneRIF Biological Term Annotations	1.0	null
REST_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
REST_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-MES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11388
squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061742
HCC38	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37964
compared	GeneRIF Biological Term Annotations	1.0	null
COR-L26	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.957592
SCC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07576
H4K20me1_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
male reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.379626
accompanied	GeneRIF Biological Term Annotations	1.0	null
specific	GeneRIF Biological Term Annotations	1.0	null
kidney cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.098363
gastrointestinal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.145447
antiproliferative	GeneRIF Biological Term Annotations	1.0	null
MG63	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
downregulated	GeneRIF Biological Term Annotations	1.0	null
evi1	GeneRIF Biological Term Annotations	1.0	null
stages	GeneRIF Biological Term Annotations	1.0	null
elevated	GeneRIF Biological Term Annotations	1.0	null
skeletal muscle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064095
CTCF_HepG2_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.69327
CTCF_GM12864_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
whereas	GeneRIF Biological Term Annotations	1.0	null
seed	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060234
akt1	GeneRIF Biological Term Annotations	1.0	null
squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.356686
TUHR14TKB	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68296
du145	GeneRIF Biological Term Annotations	1.0	null
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05228
COLO 201	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.96862
OVKATE	CCLE Cell Line Gene CNV Profiles	-1.0	-2.24327
EWS-ERG-20517297-CADO-ES1-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
decreased	GeneRIF Biological Term Annotations	1.0	null
adult	GeneRIF Biological Term Annotations	1.0	null
rs6774494	GeneRIF Biological Term Annotations	1.0	null
eye	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074803
kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070195
evidence	GeneRIF Biological Term Annotations	1.0	null
th17	GeneRIF Biological Term Annotations	1.0	null
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.965496
esophageal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.307889
heart disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.209583
musculoskeletal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045903
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.95324
skeletal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.779401
REST_HepG2_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
REST_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
rhabdomyosarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.137025
vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051662
gastric cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.359292
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1129
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075504
REST_SK-N-SH_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042127
GATA3_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
squamous	GeneRIF Biological Term Annotations	1.0	null
fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066475
MDA-MB-231	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18753
HDAC2	ENCODE Transcription Factor Targets	1.0	null
provide	GeneRIF Biological Term Annotations	1.0	null
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.871686
pathways	GeneRIF Biological Term Annotations	1.0	null
myotube	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.613361
colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.332294
HCC2814	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43601
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
dermatomyositis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.161331
colon	GeneRIF Biological Term Annotations	1.0	null
GR-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05228
POLR2AphosphoS2_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.312595
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05228
midbrain	GeneRIF Biological Term Annotations	1.0	null
muscle tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.553627
upregulated	GeneRIF Biological Term Annotations	1.0	null
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
cellular	GeneRIF Biological Term Annotations	1.0	null
lncap cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.239307
PSN1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14488
plumule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063559
H3K9me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
hepatocyte	GeneRIF Biological Term Annotations	1.0	null
specifically	GeneRIF Biological Term Annotations	1.0	null
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
extended	GeneRIF Biological Term Annotations	1.0	null
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18753
miRs in Muscle Cell Differentiation(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
different	GeneRIF Biological Term Annotations	1.0	null
UM-UC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1129
colorectal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.51571
CTCF_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.592845
essential	GeneRIF Biological Term Annotations	1.0	null
extracellular vesicular exosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.259473
CTCF_MCF-7_hg19_9	ENCODE Transcription Factor Binding Site Profiles	1.0	null
plasma	GeneRIF Biological Term Annotations	1.0	null
myocardium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.418099
HCC4006	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.70532
downstream	GeneRIF Biological Term Annotations	1.0	null
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058588
gastric cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.345558
esophageal squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.402144
lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.214202
crc	GeneRIF Biological Term Annotations	1.0	null
osteosarcoma	GeneRIF Biological Term Annotations	1.0	null
MDST8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50021
bgc-823 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.444884
olfactory bulb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.090435
miR-targeted genes in lymphocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
rectal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.51453
TarBasePathway(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
OCI-LY-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07576
congenital muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.216672
basal ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069203
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.816486
A498	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51435
extensor	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.276495
MYC_MCF-7_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
colorectal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.514924
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.864274
dopaminergic	GeneRIF Biological Term Annotations	1.0	null
SUDHL6	CCLE Cell Line Gene CNV Profiles	1.0	1.65983
EZH2_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059401
rectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.170448