association	dataset	threshold value	standardized value
HCA-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.43151
mir1405p	GeneRIF Biological Term Annotations	1.0	null
abnormal skeleton morphology	MPO Gene-Phenotype Associations	1.0	null
tgfbr1	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_ES-Bruce4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30662
abnormal total tissue mass	MPO Gene-Phenotype Associations	1.0	null
OVMANA	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73357
small nasal bone	MPO Gene-Phenotype Associations	1.0	null
chondrocytes	GeneRIF Biological Term Annotations	1.0	null
abnormal body composition	MPO Gene-Phenotype Associations	1.0	null
RUNX1-22412390-EML-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
enhancement	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
NCIH209	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46572
short femur	MPO Gene-Phenotype Associations	1.0	null
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
abnormal immune system physiology	MPO Gene-Phenotype Associations	1.0	null
RB1_KD_GSE50532_657_human_OSTEOBLASTS	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.946114
Chromosome Aberrations	CTD Gene-Disease Associations	1.0	1.06116
H3K36me3_kidney_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02305
downregulates	GeneRIF Biological Term Annotations	1.0	null
sox9	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.951244
abnormal cartilage development	MGI Mouse Phenotype Associations 2023	1.0	null
H3K36me3_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CALU-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40912
EBC1	CCLE Cell Line Gene CNV Profiles	1.0	1.80505
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10232
small vertebral body	MGI Mouse Phenotype Associations 2023	1.0	null
nucleotide	GeneRIF Biological Term Annotations	1.0	null
20448109-Table2	GeneSigDB Published Gene Signatures	1.0	null
homeostasis	GeneRIF Biological Term Annotations	1.0	null
PA-TU-8988T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10232
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09608
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	1.03345
promising	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM06990_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lineage	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_astrocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
contributes	GeneRIF Biological Term Annotations	1.0	null
short nasal bone	MGI Mouse Phenotype Associations 2023	1.0	null
H3K36me3_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LN18	CCLE Cell Line Gene CNV Profiles	1.0	1.73035
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38569
SW620	CCLE Cell Line Gene CNV Profiles	1.0	2.07382
H3K36me3_brain_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH1048	CCLE Cell Line Gene CNV Profiles	-1.0	-1.87098
cervix uteri	GTEx Tissue Gene Expression Profiles	-1.0	-0.894882
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09491
correlated	GeneRIF Biological Term Annotations	1.0	null
abnormal basisphenoid bone morphology	MPO Gene-Phenotype Associations	1.0	null
H3K36me3_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
repression	GeneRIF Biological Term Annotations	1.0	null
HEP G2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06676
undifferentiated	GeneRIF Biological Term Annotations	1.0	null
abnormal hindlimb zeugopod morphology	MPO Gene-Phenotype Associations	1.0	null
abnormal basicranium morphology	MPO Gene-Phenotype Associations	1.0	null
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09608
possesses	GeneRIF Biological Term Annotations	1.0	null
15284443-Table5	GeneSigDB Published Gene Signatures	1.0	null
decreased length of long bones	MGI Mouse Phenotype Associations 2023	1.0	null
evidence	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_U2OS_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H520	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.04078
mir1403p	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-468	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09491
candidate	GeneRIF Biological Term Annotations	1.0	null
NCIH1650	CCLE Cell Line Gene CNV Profiles	1.0	2.15198
region	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_bone marrow macrophage_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
F36P	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68464
translational	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_cardiac mesoderm_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28715
abnormal postnatal growth	MPO Gene-Phenotype Associations	1.0	null
H4K20me1_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
lung	GeneRIF Biological Term Annotations	1.0	null
sox2	GeneRIF Biological Term Annotations	1.0	null
known	GeneRIF Biological Term Annotations	1.0	null
cleft palate	GAD Gene-Disease Associations	1.0	null
characteristic	GeneRIF Biological Term Annotations	1.0	null
S117	CCLE Cell Line Gene CNV Profiles	1.0	1.47469
abnormal skeleton morphology	MGI Mouse Phenotype Associations 2023	1.0	null
H3K36me3_small intestine_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal limb long bone morphology	MPO Gene-Phenotype Associations	1.0	null
H3K36me3_Mobilized CD34 Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
SMARCA4	ChEA Transcription Factor Targets	1.0	null
H3K4me3_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
COLO792	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34477
H3K36me3_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
il1beta	GeneRIF Biological Term Annotations	1.0	null
RUNX1	ChEA Transcription Factor Targets	1.0	null
abnormal cartilage development	MPO Gene-Phenotype Associations	1.0	null
increased width of hypertrophic chondrocyte zone	MPO Gene-Phenotype Associations	1.0	null
abnormal craniofacial morphology	MPO Gene-Phenotype Associations	1.0	null
airway	GeneRIF Biological Term Annotations	1.0	null
sox6	GeneRIF Biological Term Annotations	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
oateoarthritic	GeneRIF Biological Term Annotations	1.0	null
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.74085
AU565	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38219
located	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_spleen_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
transcription	GeneRIF Biological Term Annotations	1.0	null
hsamir133agclc	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_embryonic fibroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
smad3	GeneRIF Biological Term Annotations	1.0	null
nfkappabsuppressing	GeneRIF Biological Term Annotations	1.0	null
molecular	GeneRIF Biological Term Annotations	1.0	null
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00036
H3K9me3_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
rala	GeneRIF Biological Term Annotations	1.0	null
G112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.951244
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.82928
significance	GeneRIF Biological Term Annotations	1.0	null
functionally	GeneRIF Biological Term Annotations	1.0	null
CAR-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.951244
preventative	GeneRIF Biological Term Annotations	1.0	null
abnormal skeleton physiology	MPO Gene-Phenotype Associations	1.0	null
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49302
CAL148	CCLE Cell Line Gene CNV Profiles	-1.0	-2.11413
OVCAR433	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28715
influencing	GeneRIF Biological Term Annotations	1.0	null
serve	GeneRIF Biological Term Annotations	1.0	null
ME1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00971
abnormal self tolerance	MPO Gene-Phenotype Associations	1.0	null
H3K36me3_H7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HDAC6	ENCODE Transcription Factor Targets	1.0	null
utr	GeneRIF Biological Term Annotations	1.0	null
pairs	GeneRIF Biological Term Annotations	1.0	null
indirect	GeneRIF Biological Term Annotations	1.0	null
KYSE270	CCLE Cell Line Gene CNV Profiles	1.0	1.39585
differential	GeneRIF Biological Term Annotations	1.0	null
decreased total tissue mass	MPO Gene-Phenotype Associations	1.0	null
H3K4me3_NB4_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SMARCA4-23332759-OLIGODENDROCYTES-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
involving	GeneRIF Biological Term Annotations	1.0	null
postnatal growth retardation	MPO Gene-Phenotype Associations	1.0	null
decreased body height	MPO Gene-Phenotype Associations	1.0	null
D283MED	CCLE Cell Line Gene CNV Profiles	-1.0	-2.23203
modulates	GeneRIF Biological Term Annotations	1.0	null
SUDHL1	CCLE Cell Line Gene CNV Profiles	1.0	1.68266
ovarian	GeneRIF Biological Term Annotations	1.0	null
trimester	GeneRIF Biological Term Annotations	1.0	null
suppressor	GeneRIF Biological Term Annotations	1.0	null
mammalian	GeneRIF Biological Term Annotations	1.0	null
metastasis	GeneRIF Biological Term Annotations	1.0	null
mapk	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.984959
exposed	GeneRIF Biological Term Annotations	1.0	null
RKO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06785
AP-2rep	MotifMap Predicted Transcription Factor Targets	1.0	null
first	GeneRIF Biological Term Annotations	1.0	null
short femur	MGI Mouse Phenotype Associations 2023	1.0	null
infants	GeneRIF Biological Term Annotations	1.0	null
SNU1272	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41856
Lyf-1	MotifMap Predicted Transcription Factor Targets	1.0	null
abnormal skeleton development	MPO Gene-Phenotype Associations	1.0	null
dnmt1	GeneRIF Biological Term Annotations	1.0	null
15284443-Table6	GeneSigDB Published Gene Signatures	1.0	null
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40912
H3K36me3_iPS DF 6.9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
ddx20	GeneRIF Biological Term Annotations	1.0	null
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.830352
stages	GeneRIF Biological Term Annotations	1.0	null
abnormal tibia morphology	MPO Gene-Phenotype Associations	1.0	null
breast	GeneRIF Biological Term Annotations	1.0	null
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40912
drug	GeneRIF Biological Term Annotations	1.0	null
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.881747
H3K9me1_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
abnormal cartilage morphology	MPO Gene-Phenotype Associations	1.0	null
caaa	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_GM06990_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
critical	GeneRIF Biological Term Annotations	1.0	null
therapy	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_BJ_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ossification	GeneRIF Biological Term Annotations	1.0	null
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00036
OV7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34663
SU-DHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.65571
KP3	CCLE Cell Line Gene CNV Profiles	1.0	1.34834
regions	GeneRIF Biological Term Annotations	1.0	null
decreased body size	MGI Mouse Phenotype Associations 2023	1.0	null
H3K36me3_cardiac mesoderm_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HOXA5	JASPAR Predicted Transcription Factor Targets	1.0	null
abnormal neurocranium morphology	MPO Gene-Phenotype Associations	1.0	null
H3K36me3_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ovarian cancer	GAD Gene-Disease Associations	1.0	null
GATA1	ENCODE Transcription Factor Targets	1.0	null
hsamir145e2f3	GeneRIF Biological Term Annotations	1.0	null
master	GeneRIF Biological Term Annotations	1.0	null
area	GeneRIF Biological Term Annotations	1.0	null
OVMANA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.21893
HCC1263	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.74085
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10232
short tibia	MPO Gene-Phenotype Associations	1.0	null
BT20	CCLE Cell Line Gene CNV Profiles	1.0	2.67681
USF	MotifMap Predicted Transcription Factor Targets	1.0	null
induced	GeneRIF Biological Term Annotations	1.0	null
FU97	CCLE Cell Line Gene CNV Profiles	1.0	1.33121
muscle	GTEx Tissue Gene Expression Profiles	-1.0	-0.894882
NCI-H82	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.830352
postnatal growth retardation	MGI Mouse Phenotype Associations 2023	1.0	null
directly	GeneRIF Biological Term Annotations	1.0	null
SK-MM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.3585
direct	GeneRIF Biological Term Annotations	1.0	null
early	GeneRIF Biological Term Annotations	1.0	null
suggesting	GeneRIF Biological Term Annotations	1.0	null
short snout	MPO Gene-Phenotype Associations	1.0	null
osteoarthritis	GeneRIF Biological Term Annotations	1.0	null
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.830352
H3K36me3_ES-E14_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08923
COLO-818	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.898476
H3K36me3_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
together	GeneRIF Biological Term Annotations	1.0	null
abnormal postnatal growth/weight/body size	MPO Gene-Phenotype Associations	1.0	null
roles	GeneRIF Biological Term Annotations	1.0	null
strategies	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_CD8 Naive Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
basal	GeneRIF Biological Term Annotations	1.0	null
abnormal viscerocranium morphology	MPO Gene-Phenotype Associations	1.0	null
EN1	JASPAR Predicted Transcription Factor Targets	1.0	null
limbs/digits/tail phenotype	MPO Gene-Phenotype Associations	1.0	null
upregulation	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28715
zebrafish	GeneRIF Biological Term Annotations	1.0	null
KDM5A	ENCODE Transcription Factor Targets	1.0	null
myeloma	GeneRIF Biological Term Annotations	1.0	null
tnfalpha	GeneRIF Biological Term Annotations	1.0	null
U-698-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2603
skeletal	GeneRIF Biological Term Annotations	1.0	null
hmsc	GeneRIF Biological Term Annotations	1.0	null
ECC10	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35349
decreased long bone epiphyseal plate size	MGI Mouse Phenotype Associations 2023	1.0	null
microrna140	GeneRIF Biological Term Annotations	1.0	null
KCI-MOH1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.950093
H3K36me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
acan	GeneRIF Biological Term Annotations	1.0	null
decreased cranium height	MGI Mouse Phenotype Associations 2023	1.0	null
H3K4me3_megakaryocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.843209
JHH1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54832
highlight	GeneRIF Biological Term Annotations	1.0	null
decreased length of long bones	MPO Gene-Phenotype Associations	1.0	null
salivary gland	GTEx Tissue Gene Expression Profiles	1.0	1.16335
mammalian phenotype	MPO Gene-Phenotype Associations	1.0	null
mmp13	GeneRIF Biological Term Annotations	1.0	null
POLR2A_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.934135
osteoarthritic	GeneRIF Biological Term Annotations	1.0	null
against	GeneRIF Biological Term Annotations	1.0	null
alpha	GeneRIF Biological Term Annotations	1.0	null
increased susceptibility to induced arthritis	MPO Gene-Phenotype Associations	1.0	null
NCIH322	CCLE Cell Line Gene CNV Profiles	1.0	1.552
resistance	GeneRIF Biological Term Annotations	1.0	null
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28715
micrornamrna	GeneRIF Biological Term Annotations	1.0	null
smoking	GeneRIF Biological Term Annotations	1.0	null
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10342
KMH2	CCLE Cell Line Gene CNV Profiles	1.0	2.1238
abnormal skeleton development	MGI Mouse Phenotype Associations 2023	1.0	null
muscle	GeneRIF Biological Term Annotations	1.0	null
SNU16	CCLE Cell Line Gene CNV Profiles	1.0	1.55247
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
abnormal jaw morphology	MPO Gene-Phenotype Associations	1.0	null
abnormal basicranium morphology	MGI Mouse Phenotype Associations 2023	1.0	null
H3K9ac_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
igf1r	GeneRIF Biological Term Annotations	1.0	null
suppress	GeneRIF Biological Term Annotations	1.0	null
HDAC6_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
passive	GeneRIF Biological Term Annotations	1.0	null
abnormal	GeneRIF Biological Term Annotations	1.0	null
short maxilla	MPO Gene-Phenotype Associations	1.0	null
about	GeneRIF Biological Term Annotations	1.0	null
estrogen	GeneRIF Biological Term Annotations	1.0	null
hepatocellular	GeneRIF Biological Term Annotations	1.0	null
strategy	GeneRIF Biological Term Annotations	1.0	null
TFAP2C_01_312	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.5957
maternal	GeneRIF Biological Term Annotations	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
KNS81	CCLE Cell Line Gene CNV Profiles	1.0	1.72025
abnormal limb morphology	MPO Gene-Phenotype Associations	1.0	null
acts	GeneRIF Biological Term Annotations	1.0	null
nfat3	GeneRIF Biological Term Annotations	1.0	null
Breast Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
p38	GeneRIF Biological Term Annotations	1.0	null
abnormal inflammatory response	MPO Gene-Phenotype Associations	1.0	null
OCIMY5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4429
single	GeneRIF Biological Term Annotations	1.0	null
abnormal limb bone morphology	MPO Gene-Phenotype Associations	1.0	null
NCI-H2110	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.830352
SNU-719	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.934135
PCM6	CCLE Cell Line Gene CNV Profiles	-1.0	-1.74328
HDAC2	ENCODE Transcription Factor Targets	1.0	null
abnormal hindlimb morphology	MPO Gene-Phenotype Associations	1.0	null
H3K4me1_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_C2C12_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GA-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.60558
downregulated	GeneRIF Biological Term Annotations	1.0	null
adam10	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_brain_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
MAX	ENCODE Transcription Factor Targets	1.0	null
PFEIFFER	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17873
H3K36me3_NT2-D1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulating	GeneRIF Biological Term Annotations	1.0	null
NCIH838	CCLE Cell Line Gene CNV Profiles	1.0	1.6986
number	GeneRIF Biological Term Annotations	1.0	null
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854291
BT-20	COSMIC Cell Line Gene CNV Profiles	1.0	2.15316
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.18664
small basisphenoid bone	MPO Gene-Phenotype Associations	1.0	null
SIHA	CCLE Cell Line Gene CNV Profiles	1.0	2.85042
abnormal long bone morphology	MPO Gene-Phenotype Associations	1.0	null
GR	MotifMap Predicted Transcription Factor Targets	1.0	null
SK-MES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40736
reexpression	GeneRIF Biological Term Annotations	1.0	null
dexamethasone_homo sapiens_gpl6244_gse20963	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
C3A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.871771
H3K36me3_liver_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
microrna22	GeneRIF Biological Term Annotations	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
fgf9	GeneRIF Biological Term Annotations	1.0	null
repress	GeneRIF Biological Term Annotations	1.0	null
one	GeneRIF Biological Term Annotations	1.0	null
osteogenic	GeneRIF Biological Term Annotations	1.0	null
platyspondylia	MGI Mouse Phenotype Associations 2023	1.0	null
vivo	GeneRIF Biological Term Annotations	1.0	null
altered susceptibility to autoimmune disorder	MPO Gene-Phenotype Associations	1.0	null
potency	GeneRIF Biological Term Annotations	1.0	null
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.5304
SKMM2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6197
CEBPB_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
palate	GeneRIF Biological Term Annotations	1.0	null
abnormal epiphyseal plate morphology	MPO Gene-Phenotype Associations	1.0	null
provide	GeneRIF Biological Term Annotations	1.0	null
lost	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_bronchial epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal body weight	MPO Gene-Phenotype Associations	1.0	null
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.830352
FXR	MotifMap Predicted Transcription Factor Targets	1.0	null
decreased long bone epiphyseal plate size	MPO Gene-Phenotype Associations	1.0	null
abnormal cranium morphology	MPO Gene-Phenotype Associations	1.0	null
differentiation	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nonsyndromic	GeneRIF Biological Term Annotations	1.0	null
POLR2A_bone marrow macrophage_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
validate	GeneRIF Biological Term Annotations	1.0	null
therapeutic	GeneRIF Biological Term Annotations	1.0	null
EWSR1	ChEA Transcription Factor Targets	1.0	null
H3K27ac_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
abnormal immune tolerance	MPO Gene-Phenotype Associations	1.0	null
osteoarthritis	MGI Mouse Phenotype Associations 2023	1.0	null
information	GeneRIF Biological Term Annotations	1.0	null
H3K79me2_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H4K20me1_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35493
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
NCI-H345	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.879761
COLO-783	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.24687
studies	GeneRIF Biological Term Annotations	1.0	null
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
H3K36me3_cardiac mesoderm_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir1405pmmd	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
short tibia	MGI Mouse Phenotype Associations 2023	1.0	null
increased susceptibility to autoimmune disorder	MPO Gene-Phenotype Associations	1.0	null
H3K4me3_megakaryocyte_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
NCIH2030	CCLE Cell Line Gene CNV Profiles	1.0	1.90096
COV644	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.830352
erbb4	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.984959
SOX10	MotifMap Predicted Transcription Factor Targets	1.0	null
LRF	MotifMap Predicted Transcription Factor Targets	1.0	null
enhance	GeneRIF Biological Term Annotations	1.0	null
abnormal long bone epiphyseal plate morphology	MGI Mouse Phenotype Associations 2023	1.0	null
H3K4me1_bone marrow_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02305
HOP-92	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.99496
stem	GeneRIF Biological Term Annotations	1.0	null
small basisphenoid bone	MGI Mouse Phenotype Associations 2023	1.0	null
cleft	GeneRIF Biological Term Annotations	1.0	null
develop	GeneRIF Biological Term Annotations	1.0	null
dcis	GeneRIF Biological Term Annotations	1.0	null
microrna	GeneRIF Biological Term Annotations	1.0	null
chondrogenic	GeneRIF Biological Term Annotations	1.0	null
LN-18	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.16103
abnormal femur morphology	MPO Gene-Phenotype Associations	1.0	null
abnormal body size	MPO Gene-Phenotype Associations	1.0	null
GATA1_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
targeting	GeneRIF Biological Term Annotations	1.0	null
liver	GeneRIF Biological Term Annotations	1.0	null
marrow	GeneRIF Biological Term Annotations	1.0	null
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.70225
endochondral	GeneRIF Biological Term Annotations	1.0	null
translation	GeneRIF Biological Term Annotations	1.0	null
processing	GeneRIF Biological Term Annotations	1.0	null
pax6	GeneRIF Biological Term Annotations	1.0	null
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13398
repressed	GeneRIF Biological Term Annotations	1.0	null
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.60001
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.946114
targets	GeneRIF Biological Term Annotations	1.0	null
conserved	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
abnormal chondrocyte physiology	MPO Gene-Phenotype Associations	1.0	null
HDLM2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49621
demethylation	GeneRIF Biological Term Annotations	1.0	null
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29517
abnormal snout morphology	MPO Gene-Phenotype Associations	1.0	null
H3K36me3_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
spleen	GTEx Tissue Gene Expression Profiles	-1.0	-0.894882
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40912
TE10	CCLE Cell Line Gene CNV Profiles	1.0	1.65034
H3K4me1_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
pattern	GeneRIF Biological Term Annotations	1.0	null
hcc	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_iPS DF 19.11	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
BT-20	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.37281
CEBPB	ENCODE Transcription Factor Targets	1.0	null
abnormal sphenoid bone morphology	MPO Gene-Phenotype Associations	1.0	null
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
focused	GeneRIF Biological Term Annotations	1.0	null
mir1263p	GeneRIF Biological Term Annotations	1.0	null
SKMES1	CCLE Cell Line Gene CNV Profiles	1.0	1.39776
research	GeneRIF Biological Term Annotations	1.0	null
WSU-NHL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.60093
E2A	MotifMap Predicted Transcription Factor Targets	1.0	null
HDAC2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nfkappab	GeneRIF Biological Term Annotations	1.0	null
NCI-H1650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.84918
short maxilla	MGI Mouse Phenotype Associations 2023	1.0	null
abnormal body height	MPO Gene-Phenotype Associations	1.0	null
ACHN	CCLE Cell Line Gene CNV Profiles	1.0	1.46865
H3K4me1_CD34 Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
POLR2AphosphoS5_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAX_NB4_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09608
abnormal hindlimb stylopod morphology	MPO Gene-Phenotype Associations	1.0	null
IMR32	CCLE Cell Line Gene CNV Profiles	-1.0	-1.66948
MSTO211H	CCLE Cell Line Gene CNV Profiles	1.0	2.20705
H3K4me1_spleen_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
basallike	GeneRIF Biological Term Annotations	1.0	null
csc	GeneRIF Biological Term Annotations	1.0	null
HCC2218	CCLE Cell Line Gene CNV Profiles	-1.0	-1.97573
normally	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
20054351-Table2	GeneSigDB Published Gene Signatures	1.0	null
suppressive	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_limb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
CHP-212	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.73406
regulated	GeneRIF Biological Term Annotations	1.0	null
small maxilla	MPO Gene-Phenotype Associations	1.0	null
HPAC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09608
support	GeneRIF Biological Term Annotations	1.0	null
abnormal chondrocyte physiology	MGI Mouse Phenotype Associations 2023	1.0	null
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02241
microenvironment	GeneRIF Biological Term Annotations	1.0	null
abnormal appendicular skeleton morphology	MPO Gene-Phenotype Associations	1.0	null
H3K36me3_Skeletal Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
SKBR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70181
H3K36me3_Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
OUMS-23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02305
H3K36me3_thymus_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal axial skeleton morphology	MPO Gene-Phenotype Associations	1.0	null
TE5	CCLE Cell Line Gene CNV Profiles	1.0	1.32899
G141	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.54017
domed cranium	MPO Gene-Phenotype Associations	1.0	null
mechanisms	GeneRIF Biological Term Annotations	1.0	null
WHSC1	ENCODE Transcription Factor Targets	1.0	null
positively	GeneRIF Biological Term Annotations	1.0	null
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30875
Necrosis	CTD Gene-Disease Associations	1.0	1.14404
decreased cranium height	MPO Gene-Phenotype Associations	1.0	null
polymorphism	GeneRIF Biological Term Annotations	1.0	null
M059K	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10847
abnormal maxilla morphology	MPO Gene-Phenotype Associations	1.0	null
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.881747
MicroRNAs in cardiomyocyte hypertrophy(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
OKAJIMA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20904
risk	GeneRIF Biological Term Annotations	1.0	null
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.946114
joint inflammation	MPO Gene-Phenotype Associations	1.0	null
reduction	GeneRIF Biological Term Annotations	1.0	null
mirna140	GeneRIF Biological Term Annotations	1.0	null
HCC1319	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.951244
contribute	GeneRIF Biological Term Annotations	1.0	null
abnormal nasal bone morphology	MPO Gene-Phenotype Associations	1.0	null
Inflammation	CTD Gene-Disease Associations	1.0	1.35098
EZH2_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
effect	GeneRIF Biological Term Annotations	1.0	null
genotypes	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ddx20deficient	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_GM06990_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GA10	CCLE Cell Line Gene CNV Profiles	1.0	1.74227
Prenatal Exposure Delayed Effects	CTD Gene-Disease Associations	1.0	1.23424
miR-targeted genes in muscle cell - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09491
abnormal long bone hypertrophic chondrocyte zone	MPO Gene-Phenotype Associations	1.0	null
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40736
commitment	GeneRIF Biological Term Annotations	1.0	null
process	GeneRIF Biological Term Annotations	1.0	null
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.84594
autoimmune response	MPO Gene-Phenotype Associations	1.0	null
Colorectal Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
increased susceptibility to induced arthritis	MGI Mouse Phenotype Associations 2023	1.0	null
MONOMAC6	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39994
rankl	GeneRIF Biological Term Annotations	1.0	null
cartilage	GeneRIF Biological Term Annotations	1.0	null
increased width of hypertrophic chondrocyte zone	MGI Mouse Phenotype Associations 2023	1.0	null
smooth	GeneRIF Biological Term Annotations	1.0	null
domed cranium	MGI Mouse Phenotype Associations 2023	1.0	null
chicken	GeneRIF Biological Term Annotations	1.0	null
hsamir1395ptop2a	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_iPS DF 6.9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
mir140	GeneRIF Biological Term Annotations	1.0	null
bmp2	GeneRIF Biological Term Annotations	1.0	null
bladder	GTEx Tissue Gene Expression Profiles	-1.0	-0.894882
ZR7530	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33658
abnormal craniofacial bone morphology	MPO Gene-Phenotype Associations	1.0	null
susceptibility	GeneRIF Biological Term Annotations	1.0	null
other	GeneRIF Biological Term Annotations	1.0	null
abnormal epiphyseal plate morphology	MGI Mouse Phenotype Associations 2023	1.0	null
craniofacial phenotype	MPO Gene-Phenotype Associations	1.0	null
while	GeneRIF Biological Term Annotations	1.0	null
delayed bone ossification	MGI Mouse Phenotype Associations 2023	1.0	null
EWS-ERG-20517297-CADO-ES1-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
abnormal long bone epiphyseal plate morphology	MPO Gene-Phenotype Associations	1.0	null
lsox5	GeneRIF Biological Term Annotations	1.0	null
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.881747
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.946114
HNF4	MotifMap Predicted Transcription Factor Targets	1.0	null
osteoarthritis	MPO Gene-Phenotype Associations	1.0	null
HDAC6_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDA-MB-231	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02305
HPBALL	CCLE Cell Line Gene CNV Profiles	-1.0	-1.72063
downregulating	GeneRIF Biological Term Annotations	1.0	null
KPL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52004
H3K36me3_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal head morphology	MPO Gene-Phenotype Associations	1.0	null
just	GeneRIF Biological Term Annotations	1.0	null
insulinlike	GeneRIF Biological Term Annotations	1.0	null
Cleft Palate	HuGE Navigator Gene-Phenotype Associations	1.0	null
increased inflammatory response	MPO Gene-Phenotype Associations	1.0	null
A3/KAW	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35493
KYSE-450	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.869744
micrornas	GeneRIF Biological Term Annotations	1.0	null
hsamir1403prad51ap1	GeneRIF Biological Term Annotations	1.0	null
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01371
H3K4me1_G1E_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Micronuclei, Chromosome-Defective	CTD Gene-Disease Associations	1.0	1.4332
selfrenewal	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_MEL cell line_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
H3K27ac_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
growth/size/body phenotype	MPO Gene-Phenotype Associations	1.0	null
NCIH1341	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3299
tumorigenesis	GeneRIF Biological Term Annotations	1.0	null
abnormal skeleton physiology	MGI Mouse Phenotype Associations 2023	1.0	null
H3K36me3_BJ_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir27a	GeneRIF Biological Term Annotations	1.0	null
mesenchymal	GeneRIF Biological Term Annotations	1.0	null
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.880711
skeleton phenotype	MPO Gene-Phenotype Associations	1.0	null
opening	GeneRIF Biological Term Annotations	1.0	null
SW 620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06676
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10232
suppresses	GeneRIF Biological Term Annotations	1.0	null
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45844
abnormal facial morphology	MPO Gene-Phenotype Associations	1.0	null
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
KMS20	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3714
KU1919	CCLE Cell Line Gene CNV Profiles	1.0	1.3847
SKNMC	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58153
decreased bone mineralization	MGI Mouse Phenotype Associations 2023	1.0	null
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.935165
miR-targeted genes in epithelium - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
miR-targeted genes in lymphocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
formation	GeneRIF Biological Term Annotations	1.0	null
dimeric	GeneRIF Biological Term Annotations	1.0	null
cd38	GeneRIF Biological Term Annotations	1.0	null
immune system phenotype	MPO Gene-Phenotype Associations	1.0	null
untranslated	GeneRIF Biological Term Annotations	1.0	null
led	GeneRIF Biological Term Annotations	1.0	null
KYSE-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.81475
WHSC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
G122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3621
Ovarian Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
H3K36me3_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.82928
igfbp5	GeneRIF Biological Term Annotations	1.0	null
SCC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35493
19924232-TableS2	GeneSigDB Published Gene Signatures	1.0	null
ACHN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.873805
short snout	MGI Mouse Phenotype Associations 2023	1.0	null
regulator	GeneRIF Biological Term Annotations	1.0	null
kidney	GTEx Tissue Gene Expression Profiles	1.0	1.59067
short nasal bone	MPO Gene-Phenotype Associations	1.0	null
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21027
decreased body size	MPO Gene-Phenotype Associations	1.0	null
strengthening	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS2_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
decreased body weight	MPO Gene-Phenotype Associations	1.0	null
decreased body height	MGI Mouse Phenotype Associations 2023	1.0	null
H3K36me3_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
playing	GeneRIF Biological Term Annotations	1.0	null
overcome	GeneRIF Biological Term Annotations	1.0	null
large	GeneRIF Biological Term Annotations	1.0	null
small intestine	GTEx Tissue Gene Expression Profiles	-1.0	-0.894882
axis	GeneRIF Biological Term Annotations	1.0	null
helps	GeneRIF Biological Term Annotations	1.0	null
inhibits	GeneRIF Biological Term Annotations	1.0	null
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
decreased body weight	MGI Mouse Phenotype Associations 2023	1.0	null
abnormal cranium size	MPO Gene-Phenotype Associations	1.0	null
field	GeneRIF Biological Term Annotations	1.0	null
tumorinitiating	GeneRIF Biological Term Annotations	1.0	null
GDM1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.5288
MDAMB134VI	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
arthritis	MPO Gene-Phenotype Associations	1.0	null