association	dataset	threshold value	standardized value
deacetylases	GeneRIF Biological Term Annotations	1.0	null
NCI-H1048	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00408
transcriptionally	GeneRIF Biological Term Annotations	1.0	null
SU-DHL-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05764
downstream	GeneRIF Biological Term Annotations	1.0	null
shorter	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06664
pathomechanism	GeneRIF Biological Term Annotations	1.0	null
biallelic	GeneRIF Biological Term Annotations	1.0	null
transcriptional	GeneRIF Biological Term Annotations	1.0	null
demonstrated	GeneRIF Biological Term Annotations	1.0	null
prowess	GeneRIF Biological Term Annotations	1.0	null
glucocorticoids	GeneRIF Biological Term Annotations	1.0	null
profile	GeneRIF Biological Term Annotations	1.0	null
il17	GeneRIF Biological Term Annotations	1.0	null
RC-K8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29392
COLO320	CCLE Cell Line Gene CNV Profiles	1.0	1.49883
induces	GeneRIF Biological Term Annotations	1.0	null
cellcycle	GeneRIF Biological Term Annotations	1.0	null
ca199	GeneRIF Biological Term Annotations	1.0	null
drug	GeneRIF Biological Term Annotations	1.0	null
NCIH508	CCLE Cell Line Gene CNV Profiles	1.0	2.26934
H3K36me3_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
single	GeneRIF Biological Term Annotations	1.0	null
tumour	GeneRIF Biological Term Annotations	1.0	null
CALU1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20012
leukemic	GeneRIF Biological Term Annotations	1.0	null
underlying	GeneRIF Biological Term Annotations	1.0	null
COLO 857	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.952749
COLO668	CCLE Cell Line Gene CNV Profiles	1.0	2.00983
JL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00306
bone	GeneRIF Biological Term Annotations	1.0	null
mrnas	GeneRIF Biological Term Annotations	1.0	null
transactivation	GeneRIF Biological Term Annotations	1.0	null
KARPAS-422	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0354
predicted	GeneRIF Biological Term Annotations	1.0	null
cll	GeneRIF Biological Term Annotations	1.0	null
processes	GeneRIF Biological Term Annotations	1.0	null
controls	GeneRIF Biological Term Annotations	1.0	null
adverse	GeneRIF Biological Term Annotations	1.0	null
biogenesis	GeneRIF Biological Term Annotations	1.0	null
Neoplasms	CTD Gene-Disease Associations	1.0	1.05163
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0748
hdac3	GeneRIF Biological Term Annotations	1.0	null
effects	GeneRIF Biological Term Annotations	1.0	null
lymphocytic	GeneRIF Biological Term Annotations	1.0	null
mir1243p	GeneRIF Biological Term Annotations	1.0	null
describe	GeneRIF Biological Term Annotations	1.0	null
nonsmallcell	GeneRIF Biological Term Annotations	1.0	null
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.903979
HCC4011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68801
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05942
mantle	GeneRIF Biological Term Annotations	1.0	null
microrna	GeneRIF Biological Term Annotations	1.0	null
major	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
propose	GeneRIF Biological Term Annotations	1.0	null
19895320-Table2	GeneSigDB Published Gene Signatures	1.0	null
chromosome	GeneRIF Biological Term Annotations	1.0	null
invasiveness	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_G1E-ER4_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14877
homozygously	GeneRIF Biological Term Annotations	1.0	null
formation	GeneRIF Biological Term Annotations	1.0	null
partly	GeneRIF Biological Term Annotations	1.0	null
resulted	GeneRIF Biological Term Annotations	1.0	null
contributing	GeneRIF Biological Term Annotations	1.0	null
pulmonary	GeneRIF Biological Term Annotations	1.0	null
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
increases	GeneRIF Biological Term Annotations	1.0	null
cmyb	GeneRIF Biological Term Annotations	1.0	null
C-33 A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.97347
mir15a161	GeneRIF Biological Term Annotations	1.0	null
long	GeneRIF Biological Term Annotations	1.0	null
critical	GeneRIF Biological Term Annotations	1.0	null
arrestinducing	GeneRIF Biological Term Annotations	1.0	null
only	GeneRIF Biological Term Annotations	1.0	null
while	GeneRIF Biological Term Annotations	1.0	null
ECC12	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38896
CMK115	CCLE Cell Line Gene CNV Profiles	1.0	1.55512
igf1r	GeneRIF Biological Term Annotations	1.0	null
aggressive	GeneRIF Biological Term Annotations	1.0	null
apoptosis	GeneRIF Biological Term Annotations	1.0	null
NCIH1734	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67409
different	GeneRIF Biological Term Annotations	1.0	null
correlate	GeneRIF Biological Term Annotations	1.0	null
discriminate	GeneRIF Biological Term Annotations	1.0	null
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.86554
sequester	GeneRIF Biological Term Annotations	1.0	null
aimed	GeneRIF Biological Term Annotations	1.0	null
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50682
L428	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46127
mir21	GeneRIF Biological Term Annotations	1.0	null
g2m	GeneRIF Biological Term Annotations	1.0	null
determine	GeneRIF Biological Term Annotations	1.0	null
sponge	GeneRIF Biological Term Annotations	1.0	null
pregnancy	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_cardiac mesoderm_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
p53induced	GeneRIF Biological Term Annotations	1.0	null
pleural	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_CH12.LX_mm9_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
miR-targeted genes in muscle cell - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
roles	GeneRIF Biological Term Annotations	1.0	null
U266B1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.975552
when	GeneRIF Biological Term Annotations	1.0	null
products	GeneRIF Biological Term Annotations	1.0	null
regulator	GeneRIF Biological Term Annotations	1.0	null
kcot	GeneRIF Biological Term Annotations	1.0	null
mirnas	GeneRIF Biological Term Annotations	1.0	null
monoallellically	GeneRIF Biological Term Annotations	1.0	null
suppress	GeneRIF Biological Term Annotations	1.0	null
mirna16	GeneRIF Biological Term Annotations	1.0	null
miR-targeted genes in epithelium - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14479
caused	GeneRIF Biological Term Annotations	1.0	null
potentially	GeneRIF Biological Term Annotations	1.0	null
16934749-Table3	GeneSigDB Published Gene Signatures	1.0	null
reveal	GeneRIF Biological Term Annotations	1.0	null
tlymphoblastic	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_G1E-ER4_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
control	GeneRIF Biological Term Annotations	1.0	null
downregulated	GeneRIF Biological Term Annotations	1.0	null
stability	GeneRIF Biological Term Annotations	1.0	null
histone	GeneRIF Biological Term Annotations	1.0	null
mapkinases	GeneRIF Biological Term Annotations	1.0	null
H3K79me2_MEL cell line_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
mesenchymal	GeneRIF Biological Term Annotations	1.0	null
IM-95M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06664
cluster	GeneRIF Biological Term Annotations	1.0	null
mir34a	GeneRIF Biological Term Annotations	1.0	null
oncogene	GeneRIF Biological Term Annotations	1.0	null
migration	GeneRIF Biological Term Annotations	1.0	null
CALU-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68738
Leukemia, Promyelocytic, Acute	CTD Gene-Disease Associations	1.0	2.88009
serinethreonineproteinkinase	GeneRIF Biological Term Annotations	1.0	null
cisplatin	GeneRIF Biological Term Annotations	1.0	null
let7a	GeneRIF Biological Term Annotations	1.0	null
stem	GeneRIF Biological Term Annotations	1.0	null
here	GeneRIF Biological Term Annotations	1.0	null
WSU-FSCCL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29523
samples	GeneRIF Biological Term Annotations	1.0	null
evasion	GeneRIF Biological Term Annotations	1.0	null
population	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_G1E_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
prognostic	GeneRIF Biological Term Annotations	1.0	null
vegf	GeneRIF Biological Term Annotations	1.0	null
one	GeneRIF Biological Term Annotations	1.0	null
HCC2157	CCLE Cell Line Gene CNV Profiles	-1.0	-1.89992
receptor1	GeneRIF Biological Term Annotations	1.0	null
link	GeneRIF Biological Term Annotations	1.0	null
mdr1	GeneRIF Biological Term Annotations	1.0	null
placenta	GeneRIF Biological Term Annotations	1.0	null
DBTRG05MG	CCLE Cell Line Gene CNV Profiles	1.0	1.60767
ubiquitously	GeneRIF Biological Term Annotations	1.0	null
phenotypes	GeneRIF Biological Term Annotations	1.0	null
osteosarcoma	GeneRIF Biological Term Annotations	1.0	null
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	1.17794
malignant	GeneRIF Biological Term Annotations	1.0	null
mir15a16	GeneRIF Biological Term Annotations	1.0	null
NCI-H1623	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.64866
glioma	GeneRIF Biological Term Annotations	1.0	null
model	GeneRIF Biological Term Annotations	1.0	null
complementary	GeneRIF Biological Term Annotations	1.0	null
aggregation	GeneRIF Biological Term Annotations	1.0	null
reducing	GeneRIF Biological Term Annotations	1.0	null
markedly	GeneRIF Biological Term Annotations	1.0	null
mir16	GeneRIF Biological Term Annotations	1.0	null
HSC2	CCLE Cell Line Gene CNV Profiles	1.0	1.42356
validated	GeneRIF Biological Term Annotations	1.0	null
mir196ab	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
reconstituting	GeneRIF Biological Term Annotations	1.0	null
correlated	GeneRIF Biological Term Annotations	1.0	null
mscs	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_G1E-ER4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mediate	GeneRIF Biological Term Annotations	1.0	null
affect	GeneRIF Biological Term Annotations	1.0	null
pancreatic	GeneRIF Biological Term Annotations	1.0	null
nfkappabregulated	GeneRIF Biological Term Annotations	1.0	null
controlled	GeneRIF Biological Term Annotations	1.0	null
mirna15a16	GeneRIF Biological Term Annotations	1.0	null
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03489
il8	GeneRIF Biological Term Annotations	1.0	null
odontogenic	GeneRIF Biological Term Annotations	1.0	null
provide	GeneRIF Biological Term Annotations	1.0	null
hur	GeneRIF Biological Term Annotations	1.0	null
level	GeneRIF Biological Term Annotations	1.0	null
SNU-484	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.70834
bladder	GeneRIF Biological Term Annotations	1.0	null
suppression	GeneRIF Biological Term Annotations	1.0	null
phase	GeneRIF Biological Term Annotations	1.0	null
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.17718
edema	GeneRIF Biological Term Annotations	1.0	null
serve	GeneRIF Biological Term Annotations	1.0	null
arsenic trioxide	CTD Gene-Chemical Interactions	1.0	null
OVSAHO	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54366
peripheral	GeneRIF Biological Term Annotations	1.0	null
inverse	GeneRIF Biological Term Annotations	1.0	null
targets	GeneRIF Biological Term Annotations	1.0	null
copy	GeneRIF Biological Term Annotations	1.0	null
ETS1_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
myeloma	GeneRIF Biological Term Annotations	1.0	null
breast	GeneRIF Biological Term Annotations	1.0	null
TRIM28_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.10917
TRIM28	ENCODE Transcription Factor Targets	1.0	null
regulators	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_erythroblast_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27ac_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
GRANTA-519	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.917304
mirna1	GeneRIF Biological Term Annotations	1.0	null
stromal	GeneRIF Biological Term Annotations	1.0	null
sensitivity	GeneRIF Biological Term Annotations	1.0	null
first	GeneRIF Biological Term Annotations	1.0	null
whereas	GeneRIF Biological Term Annotations	1.0	null
higher	GeneRIF Biological Term Annotations	1.0	null
suppressive	GeneRIF Biological Term Annotations	1.0	null
BICR18	CCLE Cell Line Gene CNV Profiles	1.0	1.46719
CTCF_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
upregulation	GeneRIF Biological Term Annotations	1.0	null
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.912799
advanced	GeneRIF Biological Term Annotations	1.0	null
circulating	GeneRIF Biological Term Annotations	1.0	null
COLO 853	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.904736
KLF7_01_342	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	1.15668
U937	CCLE Cell Line Gene CNV Profiles	1.0	1.39838
sickle	GeneRIF Biological Term Annotations	1.0	null
hepg2	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_U2OS_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
factorinduced	GeneRIF Biological Term Annotations	1.0	null
mcl	GeneRIF Biological Term Annotations	1.0	null
cultures	GeneRIF Biological Term Annotations	1.0	null
arthritis	GeneRIF Biological Term Annotations	1.0	null
lymphoma	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
wt1	GeneRIF Biological Term Annotations	1.0	null
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.864796
prostate	GeneRIF Biological Term Annotations	1.0	null
nfkappabactivator	GeneRIF Biological Term Annotations	1.0	null
injury	GeneRIF Biological Term Annotations	1.0	null
cigarette	GeneRIF Biological Term Annotations	1.0	null
manner	GeneRIF Biological Term Annotations	1.0	null
therapeutic	GeneRIF Biological Term Annotations	1.0	null
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34848
ETS1	ENCODE Transcription Factor Targets	1.0	null
more	GeneRIF Biological Term Annotations	1.0	null
NCI-H508	COSMIC Cell Line Gene CNV Profiles	1.0	2.14311
Leukemia, Lymphocytic, Chronic, B-Cell	CTD Gene-Disease Associations	1.0	2.88009
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68738
late	GeneRIF Biological Term Annotations	1.0	null
enhanced	GeneRIF Biological Term Annotations	1.0	null
hsp70	GeneRIF Biological Term Annotations	1.0	null
skhep1	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_erythroblast_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H2135	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.879593
progenitor	GeneRIF Biological Term Annotations	1.0	null
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25085
endogenous	GeneRIF Biological Term Annotations	1.0	null
U-937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.71714
inhibits	GeneRIF Biological Term Annotations	1.0	null
smrt	GeneRIF Biological Term Annotations	1.0	null
bcell	GeneRIF Biological Term Annotations	1.0	null
deleted	GeneRIF Biological Term Annotations	1.0	null
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.64866
lines	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_brain_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir181b	GeneRIF Biological Term Annotations	1.0	null
SNU-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.84222
SNUC1	CCLE Cell Line Gene CNV Profiles	1.0	1.73863
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.912799
noninvasive	GeneRIF Biological Term Annotations	1.0	null
NCI-H1734	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43417
regulate	GeneRIF Biological Term Annotations	1.0	null
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03489
positively	GeneRIF Biological Term Annotations	1.0	null
sodium	GeneRIF Biological Term Annotations	1.0	null
three	GeneRIF Biological Term Annotations	1.0	null
mirna	GeneRIF Biological Term Annotations	1.0	null
H3K79me2_myocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_G1E_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH1975	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41688
OUMS-23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.56398
functions	GeneRIF Biological Term Annotations	1.0	null
NFIC	JASPAR Predicted Transcription Factor Targets	1.0	null
lymphomas	GeneRIF Biological Term Annotations	1.0	null
vascular	GeneRIF Biological Term Annotations	1.0	null
anaplastic	GeneRIF Biological Term Annotations	1.0	null
involves	GeneRIF Biological Term Annotations	1.0	null
hbv	GeneRIF Biological Term Annotations	1.0	null
bmi1	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_BJ_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
encoded	GeneRIF Biological Term Annotations	1.0	null
correlation	GeneRIF Biological Term Annotations	1.0	null
boosted	GeneRIF Biological Term Annotations	1.0	null
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.961874
mir223	GeneRIF Biological Term Annotations	1.0	null
abilities	GeneRIF Biological Term Annotations	1.0	null
individuals	GeneRIF Biological Term Annotations	1.0	null
ligand	GeneRIF Biological Term Annotations	1.0	null
EFO21	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60538
aml	GeneRIF Biological Term Annotations	1.0	null
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
SW948	CCLE Cell Line Gene CNV Profiles	1.0	2.12809
mir15amir161	GeneRIF Biological Term Annotations	1.0	null
NCIH2073	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43257
mechanisms	GeneRIF Biological Term Annotations	1.0	null
involving	GeneRIF Biological Term Annotations	1.0	null
mirna15	GeneRIF Biological Term Annotations	1.0	null
independent	GeneRIF Biological Term Annotations	1.0	null
checkpoint	GeneRIF Biological Term Annotations	1.0	null
tamoxifeninduced	GeneRIF Biological Term Annotations	1.0	null
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.864796
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21675
H3K79me2_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_small intestine_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
bind	GeneRIF Biological Term Annotations	1.0	null
hepatocellular	GeneRIF Biological Term Annotations	1.0	null
turn	GeneRIF Biological Term Annotations	1.0	null
pheochromocytomas	GeneRIF Biological Term Annotations	1.0	null
site	GeneRIF Biological Term Annotations	1.0	null
POLR2A_MCF-7_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
region	GeneRIF Biological Term Annotations	1.0	null
pmns	GeneRIF Biological Term Annotations	1.0	null
CAL-78	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.12964
host	GeneRIF Biological Term Annotations	1.0	null
bdnf	GeneRIF Biological Term Annotations	1.0	null
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.7275
miRNA Regulation of DNA Damage Response(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
rpii	GeneRIF Biological Term Annotations	1.0	null
CMK	CCLE Cell Line Gene CNV Profiles	1.0	1.36312
CTCF_skin fibroblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.927922
serotonin	GeneRIF Biological Term Annotations	1.0	null
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.327
placentas	GeneRIF Biological Term Annotations	1.0	null
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.912799
progressionfree	GeneRIF Biological Term Annotations	1.0	null
microrna16	GeneRIF Biological Term Annotations	1.0	null
DV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06664
key	GeneRIF Biological Term Annotations	1.0	null
mouse	GeneRIF Biological Term Annotations	1.0	null
furthermore	GeneRIF Biological Term Annotations	1.0	null
hbf	GeneRIF Biological Term Annotations	1.0	null
OCIAML3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34545
negatively	GeneRIF Biological Term Annotations	1.0	null
embedded	GeneRIF Biological Term Annotations	1.0	null
regulatory	GeneRIF Biological Term Annotations	1.0	null
downregulation	GeneRIF Biological Term Annotations	1.0	null
derepress	GeneRIF Biological Term Annotations	1.0	null
hbx	GeneRIF Biological Term Annotations	1.0	null
tcl1	GeneRIF Biological Term Annotations	1.0	null
COLO 201	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0319
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02119
mirna214	GeneRIF Biological Term Annotations	1.0	null
bystander	GeneRIF Biological Term Annotations	1.0	null
niche	GeneRIF Biological Term Annotations	1.0	null
mds	GeneRIF Biological Term Annotations	1.0	null
deletion	GeneRIF Biological Term Annotations	1.0	null
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.845889
miR-targeted genes in squamous cell - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
H3K36me3_kidney_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
subset	GeneRIF Biological Term Annotations	1.0	null
about	GeneRIF Biological Term Annotations	1.0	null
lung	GeneRIF Biological Term Annotations	1.0	null
diabetes	GeneRIF Biological Term Annotations	1.0	null
posttranscriptional	GeneRIF Biological Term Annotations	1.0	null
cellular	GeneRIF Biological Term Annotations	1.0	null
respectively	GeneRIF Biological Term Annotations	1.0	null
mirnamediated	GeneRIF Biological Term Annotations	1.0	null
COLO 206F	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33898
attention	GeneRIF Biological Term Annotations	1.0	null
master	GeneRIF Biological Term Annotations	1.0	null
multiple	GeneRIF Biological Term Annotations	1.0	null
CL-40	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21675
mir181a	GeneRIF Biological Term Annotations	1.0	null
leukemia	GeneRIF Biological Term Annotations	1.0	null
angiogenesis	GeneRIF Biological Term Annotations	1.0	null
mononuclear	GeneRIF Biological Term Annotations	1.0	null
dihydroartemisinin	GeneRIF Biological Term Annotations	1.0	null
her2delta16	GeneRIF Biological Term Annotations	1.0	null
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42496
tp53	GeneRIF Biological Term Annotations	1.0	null
resolution	GeneRIF Biological Term Annotations	1.0	null
compared	GeneRIF Biological Term Annotations	1.0	null
least	GeneRIF Biological Term Annotations	1.0	null
ZNF354C	JASPAR Predicted Transcription Factor Targets	1.0	null
part	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_erythroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
serum	GeneRIF Biological Term Annotations	1.0	null
NCIH522	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69454
aubps	GeneRIF Biological Term Annotations	1.0	null
H3K79me3_C2C12_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
adult	GeneRIF Biological Term Annotations	1.0	null
e2f	GeneRIF Biological Term Annotations	1.0	null
MT-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29392
commonly	GeneRIF Biological Term Annotations	1.0	null
plasma	GeneRIF Biological Term Annotations	1.0	null
LXFL529	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21675
UACC812	CCLE Cell Line Gene CNV Profiles	1.0	2.74113
map3kip3	GeneRIF Biological Term Annotations	1.0	null
interacts	GeneRIF Biological Term Annotations	1.0	null
OCI-AML3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06664
colorectal	GeneRIF Biological Term Annotations	1.0	null
identify	GeneRIF Biological Term Annotations	1.0	null
OCI-LY-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06664
POLR2A_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
enac	GeneRIF Biological Term Annotations	1.0	null
changes	GeneRIF Biological Term Annotations	1.0	null
metastatic	GeneRIF Biological Term Annotations	1.0	null
other	GeneRIF Biological Term Annotations	1.0	null
20068076-SuppTable11a	GeneSigDB Published Gene Signatures	1.0	null
cellautonomous	GeneRIF Biological Term Annotations	1.0	null
mir15a161deletion	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_CH12.LX_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
adenosine	GeneRIF Biological Term Annotations	1.0	null
COLO 205	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.73993
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27877
represent	GeneRIF Biological Term Annotations	1.0	null
largecell	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_megakaryocyte_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
myeloidspecific	GeneRIF Biological Term Annotations	1.0	null
mir15b	GeneRIF Biological Term Annotations	1.0	null
combination	GeneRIF Biological Term Annotations	1.0	null
controlling	GeneRIF Biological Term Annotations	1.0	null
suppressors	GeneRIF Biological Term Annotations	1.0	null
represses	GeneRIF Biological Term Annotations	1.0	null
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43417
end	GeneRIF Biological Term Annotations	1.0	null
modulates	GeneRIF Biological Term Annotations	1.0	null
myb	GeneRIF Biological Term Annotations	1.0	null
regulating	GeneRIF Biological Term Annotations	1.0	null
epithelial	GeneRIF Biological Term Annotations	1.0	null
than	GeneRIF Biological Term Annotations	1.0	null
upregulate	GeneRIF Biological Term Annotations	1.0	null
LS513	CCLE Cell Line Gene CNV Profiles	1.0	1.51411
betathalassemia	GeneRIF Biological Term Annotations	1.0	null
lowrisk	GeneRIF Biological Term Annotations	1.0	null
clusters	GeneRIF Biological Term Annotations	1.0	null
arrest	GeneRIF Biological Term Annotations	1.0	null
COLO201	CCLE Cell Line Gene CNV Profiles	1.0	1.40142
mir	GeneRIF Biological Term Annotations	1.0	null
families	GeneRIF Biological Term Annotations	1.0	null
EWSR1	ChEA Transcription Factor Targets	1.0	null
restenosis	GeneRIF Biological Term Annotations	1.0	null
administration	GeneRIF Biological Term Annotations	1.0	null
survival	GeneRIF Biological Term Annotations	1.0	null
differentially	GeneRIF Biological Term Annotations	1.0	null
KMOE-2	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.12964
transcribed	GeneRIF Biological Term Annotations	1.0	null
Chromosome Aberrations	HuGE Navigator Gene-Phenotype Associations	1.0	null
loss	GeneRIF Biological Term Annotations	1.0	null
POLR2A_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
angiogenic	GeneRIF Biological Term Annotations	1.0	null
decrease	GeneRIF Biological Term Annotations	1.0	null
mir26ab	GeneRIF Biological Term Annotations	1.0	null
shown	GeneRIF Biological Term Annotations	1.0	null
present	GeneRIF Biological Term Annotations	1.0	null
nucleolin	GeneRIF Biological Term Annotations	1.0	null
differentiation	GeneRIF Biological Term Annotations	1.0	null
RI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09799
miR-targeted genes in leukocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
partially	GeneRIF Biological Term Annotations	1.0	null
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.64866
inhibit	GeneRIF Biological Term Annotations	1.0	null
hemorrhagic	GeneRIF Biological Term Annotations	1.0	null
modulation	GeneRIF Biological Term Annotations	1.0	null
mycinduced	GeneRIF Biological Term Annotations	1.0	null
mir146a	GeneRIF Biological Term Annotations	1.0	null
miR-targeted genes in lymphocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
like	GeneRIF Biological Term Annotations	1.0	null
keratocystic	GeneRIF Biological Term Annotations	1.0	null
hdgf	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_liver_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
suppressed	GeneRIF Biological Term Annotations	1.0	null
often	GeneRIF Biological Term Annotations	1.0	null
modulated	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_thymus_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
since	GeneRIF Biological Term Annotations	1.0	null
channel	GeneRIF Biological Term Annotations	1.0	null
ap4	GeneRIF Biological Term Annotations	1.0	null
HCC2218	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.898471
deletions	GeneRIF Biological Term Annotations	1.0	null
resulting	GeneRIF Biological Term Annotations	1.0	null
meg01	GeneRIF Biological Term Annotations	1.0	null
side	GeneRIF Biological Term Annotations	1.0	null
ischemic	GeneRIF Biological Term Annotations	1.0	null
induce	GeneRIF Biological Term Annotations	1.0	null
early	GeneRIF Biological Term Annotations	1.0	null
gastric	GeneRIF Biological Term Annotations	1.0	null
20028859-Table2	GeneSigDB Published Gene Signatures	1.0	null
NCI-H345	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.57112
suggests	GeneRIF Biological Term Annotations	1.0	null
transcriptome	GeneRIF Biological Term Annotations	1.0	null
HCC1576	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46999
H3K36me3_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
IM-95	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00408
hmga1	GeneRIF Biological Term Annotations	1.0	null
SNU449	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59662
alleviates	GeneRIF Biological Term Annotations	1.0	null
type	GeneRIF Biological Term Annotations	1.0	null
shsy5y	GeneRIF Biological Term Annotations	1.0	null
HCC1319	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.60996
detections	GeneRIF Biological Term Annotations	1.0	null
suggesting	GeneRIF Biological Term Annotations	1.0	null
HEP3B217	CCLE Cell Line Gene CNV Profiles	-1.0	-2.02613
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05764
HCC1263	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.73993
akt3	GeneRIF Biological Term Annotations	1.0	null
stabilizes	GeneRIF Biological Term Annotations	1.0	null
poor	GeneRIF Biological Term Annotations	1.0	null
NCIH1355	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50101
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.6628
decreased	GeneRIF Biological Term Annotations	1.0	null
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.51404
implicate	GeneRIF Biological Term Annotations	1.0	null
tissues	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_megakaryocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
targeting	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_B cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
coregulation	GeneRIF Biological Term Annotations	1.0	null
kinetic	GeneRIF Biological Term Annotations	1.0	null
SW1463	CCLE Cell Line Gene CNV Profiles	1.0	1.70363
colony	GeneRIF Biological Term Annotations	1.0	null
transcription	GeneRIF Biological Term Annotations	1.0	null
dha	GeneRIF Biological Term Annotations	1.0	null
CL-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.38287
ML-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37992
H3K36me3_astrocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
proliferation	GeneRIF Biological Term Annotations	1.0	null
highthroughput	GeneRIF Biological Term Annotations	1.0	null
transformation	GeneRIF Biological Term Annotations	1.0	null
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.73993
H3K36me3_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ischemia	GeneRIF Biological Term Annotations	1.0	null
endothelial	GeneRIF Biological Term Annotations	1.0	null
SOX4	MotifMap Predicted Transcription Factor Targets	1.0	null
caprin1	GeneRIF Biological Term Annotations	1.0	null
ccnd1	GeneRIF Biological Term Annotations	1.0	null
SU-DHL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1489
OCUM1	CCLE Cell Line Gene CNV Profiles	1.0	1.33728
H3K36me3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
performance	GeneRIF Biological Term Annotations	1.0	null
profiling	GeneRIF Biological Term Annotations	1.0	null
translation	GeneRIF Biological Term Annotations	1.0	null
overexpression	GeneRIF Biological Term Annotations	1.0	null
microprocessor	GeneRIF Biological Term Annotations	1.0	null
mesothelioma	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_ES-Bruce4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22602
mellitus	GeneRIF Biological Term Annotations	1.0	null
family	GeneRIF Biological Term Annotations	1.0	null
P31FUJ	CCLE Cell Line Gene CNV Profiles	1.0	1.71076
tumors	GeneRIF Biological Term Annotations	1.0	null
locus	GeneRIF Biological Term Annotations	1.0	null
myogenic	GeneRIF Biological Term Annotations	1.0	null
chronic	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
act	GeneRIF Biological Term Annotations	1.0	null
cancers	GeneRIF Biological Term Annotations	1.0	null
another	GeneRIF Biological Term Annotations	1.0	null
induced	GeneRIF Biological Term Annotations	1.0	null
limb	GeneRIF Biological Term Annotations	1.0	null
accelerates	GeneRIF Biological Term Annotations	1.0	null
toward	GeneRIF Biological Term Annotations	1.0	null
20448109-Table2	GeneSigDB Published Gene Signatures	1.0	null
ALEXANDERCELLS	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53397
SNU-719	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.903979
promoted	GeneRIF Biological Term Annotations	1.0	null
radiationinduced	GeneRIF Biological Term Annotations	1.0	null
dleu2	GeneRIF Biological Term Annotations	1.0	null
NCIH889	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81173
miha	GeneRIF Biological Term Annotations	1.0	null
hnrnp	GeneRIF Biological Term Annotations	1.0	null
microrna424	GeneRIF Biological Term Annotations	1.0	null
akt	GeneRIF Biological Term Annotations	1.0	null
possess	GeneRIF Biological Term Annotations	1.0	null
identifies	GeneRIF Biological Term Annotations	1.0	null
SNU-449	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36452
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06664
ccnb1	GeneRIF Biological Term Annotations	1.0	null
p53survivin	GeneRIF Biological Term Annotations	1.0	null
cox2	GeneRIF Biological Term Annotations	1.0	null
evaluate	GeneRIF Biological Term Annotations	1.0	null
rbdependent	GeneRIF Biological Term Annotations	1.0	null
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.86554
repression	GeneRIF Biological Term Annotations	1.0	null
WSU-DLCL2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06664
OUMS23	CCLE Cell Line Gene CNV Profiles	1.0	1.67767
H3K36me3_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir161	GeneRIF Biological Term Annotations	1.0	null
states	GeneRIF Biological Term Annotations	1.0	null
WSU-NHL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37992
NCIH1623	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59458
addition	GeneRIF Biological Term Annotations	1.0	null
ribosomalproteins6	GeneRIF Biological Term Annotations	1.0	null
detection	GeneRIF Biological Term Annotations	1.0	null
modulating	GeneRIF Biological Term Annotations	1.0	null
COLO 794	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18379
number	GeneRIF Biological Term Annotations	1.0	null
SIDS Susceptibility Pathways(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
lymphoblastic	GeneRIF Biological Term Annotations	1.0	null
doublenegative	GeneRIF Biological Term Annotations	1.0	null
progestin	GeneRIF Biological Term Annotations	1.0	null
lymphomaleukemia	GeneRIF Biological Term Annotations	1.0	null
loop	GeneRIF Biological Term Annotations	1.0	null
DU4475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.927455
inhibited	GeneRIF Biological Term Annotations	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.18241
increase	GeneRIF Biological Term Annotations	1.0	null
a2a	GeneRIF Biological Term Annotations	1.0	null
alphasynuclein	GeneRIF Biological Term Annotations	1.0	null
induction	GeneRIF Biological Term Annotations	1.0	null
after	GeneRIF Biological Term Annotations	1.0	null
mir1516	GeneRIF Biological Term Annotations	1.0	null
mir222	GeneRIF Biological Term Annotations	1.0	null
SK-MM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.917304
hmga2targeting	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_spleen_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
direct	GeneRIF Biological Term Annotations	1.0	null
mir155	GeneRIF Biological Term Annotations	1.0	null
mir15a	GeneRIF Biological Term Annotations	1.0	null
synergistically	GeneRIF Biological Term Annotations	1.0	null
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17929
Glucose Intolerance	CTD Gene-Disease Associations	1.0	1.15458
receptor2	GeneRIF Biological Term Annotations	1.0	null
PLC/PRF/5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21935
infant	GeneRIF Biological Term Annotations	1.0	null
feedback	GeneRIF Biological Term Annotations	1.0	null
SKUT1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33105
acts	GeneRIF Biological Term Annotations	1.0	null
not applicable_cell type comparison_GSE49439_365_human_podocytes and progenitors	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
noncoding	GeneRIF Biological Term Annotations	1.0	null
transporter	GeneRIF Biological Term Annotations	1.0	null
bcl2	GeneRIF Biological Term Annotations	1.0	null
LN319	CCLE Cell Line Gene CNV Profiles	-1.0	-2.58602
acute	GeneRIF Biological Term Annotations	1.0	null
therapies	GeneRIF Biological Term Annotations	1.0	null
H3K79me2_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
upregulates	GeneRIF Biological Term Annotations	1.0	null
KO52	CCLE Cell Line Gene CNV Profiles	1.0	1.85104
outcome	GeneRIF Biological Term Annotations	1.0	null
thus	GeneRIF Biological Term Annotations	1.0	null
PLB985	CCLE Cell Line Gene CNV Profiles	1.0	1.37243
exhibited	GeneRIF Biological Term Annotations	1.0	null
20028859-TableS2	GeneSigDB Published Gene Signatures	1.0	null
however	GeneRIF Biological Term Annotations	1.0	null
JHOS4	CCLE Cell Line Gene CNV Profiles	1.0	1.69911
support	GeneRIF Biological Term Annotations	1.0	null
COLO205	CCLE Cell Line Gene CNV Profiles	1.0	2.13183
mir29b	GeneRIF Biological Term Annotations	1.0	null
subsequent	GeneRIF Biological Term Annotations	1.0	null
inflammation	GeneRIF Biological Term Annotations	1.0	null
mir15	GeneRIF Biological Term Annotations	1.0	null
mir1792	GeneRIF Biological Term Annotations	1.0	null
micrornas	GeneRIF Biological Term Annotations	1.0	null
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.96269
PARP2_KD_GSE43981_676_human_HepG2	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
POLR2AphosphoS2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
evidence	GeneRIF Biological Term Annotations	1.0	null
Hematopoietic Stem Cell Differentiation(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
healthy	GeneRIF Biological Term Annotations	1.0	null
mediated	GeneRIF Biological Term Annotations	1.0	null
cyclooxygenase2	GeneRIF Biological Term Annotations	1.0	null
restoration	GeneRIF Biological Term Annotations	1.0	null
reveals	GeneRIF Biological Term Annotations	1.0	null
fibroblast	GeneRIF Biological Term Annotations	1.0	null
PL-21	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.75524
dleu1	GeneRIF Biological Term Annotations	1.0	null
highrisk	GeneRIF Biological Term Annotations	1.0	null
KMBC2	CCLE Cell Line Gene CNV Profiles	-1.0	-2.35144
clinical	GeneRIF Biological Term Annotations	1.0	null
rheumatoid	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
malignancies	GeneRIF Biological Term Annotations	1.0	null
validation	GeneRIF Biological Term Annotations	1.0	null
percentage	GeneRIF Biological Term Annotations	1.0	null
stroke	GeneRIF Biological Term Annotations	1.0	null
EVSAT	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54338
effect	GeneRIF Biological Term Annotations	1.0	null
cardiac	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
placental	GeneRIF Biological Term Annotations	1.0	null
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08544
prognosis	GeneRIF Biological Term Annotations	1.0	null
oncogenes	GeneRIF Biological Term Annotations	1.0	null
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.96269
suppressor	GeneRIF Biological Term Annotations	1.0	null
vitro	GeneRIF Biological Term Annotations	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
enhances	GeneRIF Biological Term Annotations	1.0	null
pediatric	GeneRIF Biological Term Annotations	1.0	null
leukemogenesis	GeneRIF Biological Term Annotations	1.0	null
many	GeneRIF Biological Term Annotations	1.0	null
there	GeneRIF Biological Term Annotations	1.0	null
smokeexposed	GeneRIF Biological Term Annotations	1.0	null
diseases	GeneRIF Biological Term Annotations	1.0	null
highlighted	GeneRIF Biological Term Annotations	1.0	null
EWS-FLI1-20517297-SK-N-MC-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_GM06990_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
antimir16	GeneRIF Biological Term Annotations	1.0	null
invasion	GeneRIF Biological Term Annotations	1.0	null
miR-targeted genes in adipocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
line	GeneRIF Biological Term Annotations	1.0	null
amputation	GeneRIF Biological Term Annotations	1.0	null
CAL78	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.961874
CALU6	CCLE Cell Line Gene CNV Profiles	1.0	2.76377
diagnostic	GeneRIF Biological Term Annotations	1.0	null
COLO800	CCLE Cell Line Gene CNV Profiles	1.0	1.57632
cycle	GeneRIF Biological Term Annotations	1.0	null
CALU-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.60468
primary	GeneRIF Biological Term Annotations	1.0	null
treatment	GeneRIF Biological Term Annotations	1.0	null
hsamir15ahsamir161	GeneRIF Biological Term Annotations	1.0	null
known	GeneRIF Biological Term Annotations	1.0	null
MM.1S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.917304
rna	GeneRIF Biological Term Annotations	1.0	null
silencing	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-134-VI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.927922
mir132	GeneRIF Biological Term Annotations	1.0	null
regulated	GeneRIF Biological Term Annotations	1.0	null
pcmt1	GeneRIF Biological Term Annotations	1.0	null
CALU-6	COSMIC Cell Line Gene CNV Profiles	1.0	2.14311
cmycdriven	GeneRIF Biological Term Annotations	1.0	null
mdr	GeneRIF Biological Term Annotations	1.0	null
s100b	GeneRIF Biological Term Annotations	1.0	null
qpcr	GeneRIF Biological Term Annotations	1.0	null
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.86554
marrow	GeneRIF Biological Term Annotations	1.0	null
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03107
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25497
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00397
vivo	GeneRIF Biological Term Annotations	1.0	null
VMRCRCW	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57429
downregulating	GeneRIF Biological Term Annotations	1.0	null
apoptopsis	GeneRIF Biological Term Annotations	1.0	null
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0319
blood	GeneRIF Biological Term Annotations	1.0	null
elevated	GeneRIF Biological Term Annotations	1.0	null
miRNAs involved in DNA damage response(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
outcomes	GeneRIF Biological Term Annotations	1.0	null
POLR2A_HeLa-S3_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
20086245-Table2a	GeneSigDB Published Gene Signatures	1.0	null
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.943519
groups	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_heart_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU1197	CCLE Cell Line Gene CNV Profiles	1.0	1.76498
20068076-SuppTable11b	GeneSigDB Published Gene Signatures	1.0	null
glycation	GeneRIF Biological Term Annotations	1.0	null
measured	GeneRIF Biological Term Annotations	1.0	null
markers	GeneRIF Biological Term Annotations	1.0	null
inhibiting	GeneRIF Biological Term Annotations	1.0	null
chemoresistance	GeneRIF Biological Term Annotations	1.0	null
repressed	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_testis_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
score	GeneRIF Biological Term Annotations	1.0	null
kinasepositive	GeneRIF Biological Term Annotations	1.0	null
NCIH2291	CCLE Cell Line Gene CNV Profiles	-1.0	-1.594