association	dataset	threshold value	standardized value
therapeutic	GeneRIF Biological Term Annotations	1.0	null
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3978
769-P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14127
mir137	GeneRIF Biological Term Annotations	1.0	null
repressing	GeneRIF Biological Term Annotations	1.0	null
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.16428
underlies	GeneRIF Biological Term Annotations	1.0	null
transcript	GeneRIF Biological Term Annotations	1.0	null
level	GeneRIF Biological Term Annotations	1.0	null
killing	GeneRIF Biological Term Annotations	1.0	null
mir181b1	GeneRIF Biological Term Annotations	1.0	null
europaea	GeneRIF Biological Term Annotations	1.0	null
signature	GeneRIF Biological Term Annotations	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
shorter	GeneRIF Biological Term Annotations	1.0	null
gastric	GeneRIF Biological Term Annotations	1.0	null
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.827337
H3K36me3_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
strategies	GeneRIF Biological Term Annotations	1.0	null
only	GeneRIF Biological Term Annotations	1.0	null
compared	GeneRIF Biological Term Annotations	1.0	null
component	GeneRIF Biological Term Annotations	1.0	null
RAD21_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
WM-115	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00597
thus	GeneRIF Biological Term Annotations	1.0	null
predicts	GeneRIF Biological Term Annotations	1.0	null
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08712
hold	GeneRIF Biological Term Annotations	1.0	null
capability	GeneRIF Biological Term Annotations	1.0	null
G130	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.895675
HCC1599	CCLE Cell Line Gene CNV Profiles	1.0	1.5927
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
tumorigenesis	GeneRIF Biological Term Annotations	1.0	null
abnormal	GeneRIF Biological Term Annotations	1.0	null
exert	GeneRIF Biological Term Annotations	1.0	null
NCI-H2804	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2215
inhibitors	GeneRIF Biological Term Annotations	1.0	null
mir125b	GeneRIF Biological Term Annotations	1.0	null
mirna181b	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS2_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
endothelial	GeneRIF Biological Term Annotations	1.0	null
secreted	GeneRIF Biological Term Annotations	1.0	null
EFO21	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33133
SJRH30	CCLE Cell Line Gene CNV Profiles	-1.0	-2.37186
remission	GeneRIF Biological Term Annotations	1.0	null
induced	GeneRIF Biological Term Annotations	1.0	null
capable	GeneRIF Biological Term Annotations	1.0	null
HS 746T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10241
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.70347
p27	GeneRIF Biological Term Annotations	1.0	null
tcl1	GeneRIF Biological Term Annotations	1.0	null
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51649
igf1r	GeneRIF Biological Term Annotations	1.0	null
PC3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.62339
leukemia	GeneRIF Biological Term Annotations	1.0	null
lower	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_HL-60_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
serrated	GeneRIF Biological Term Annotations	1.0	null
SUPHD1	CCLE Cell Line Gene CNV Profiles	1.0	2.34644
acute	GeneRIF Biological Term Annotations	1.0	null
A2780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.859761
approach	GeneRIF Biological Term Annotations	1.0	null
leading	GeneRIF Biological Term Annotations	1.0	null
inhibition	GeneRIF Biological Term Annotations	1.0	null
apoptosis	GeneRIF Biological Term Annotations	1.0	null
basis	GeneRIF Biological Term Annotations	1.0	null
hoxa7	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-N-AS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00597
effective	GeneRIF Biological Term Annotations	1.0	null
DU4475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14266
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13132
prognostic	GeneRIF Biological Term Annotations	1.0	null
HCC78	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.851396
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
relapsefreeoverall	GeneRIF Biological Term Annotations	1.0	null
differentially	GeneRIF Biological Term Annotations	1.0	null
samples	GeneRIF Biological Term Annotations	1.0	null
SAP30_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
espressed	GeneRIF Biological Term Annotations	1.0	null
SNU324	CCLE Cell Line Gene CNV Profiles	1.0	1.35322
FOXA1	ENCODE Transcription Factor Targets	1.0	null
mirnas	GeneRIF Biological Term Annotations	1.0	null
temozolomide	GeneRIF Biological Term Annotations	1.0	null
miR-targeted genes in muscle cell - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
19895320-Table2	GeneSigDB Published Gene Signatures	1.0	null
CAL148	CCLE Cell Line Gene CNV Profiles	1.0	1.60703
NCI-H460	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29714
novo	GeneRIF Biological Term Annotations	1.0	null
strategy	GeneRIF Biological Term Annotations	1.0	null
inverse	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
caaml	GeneRIF Biological Term Annotations	1.0	null
distinguished	GeneRIF Biological Term Annotations	1.0	null
samhd1	GeneRIF Biological Term Annotations	1.0	null
PK-45H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.961975
suppressor	GeneRIF Biological Term Annotations	1.0	null
OKAJIMA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20544
specify	GeneRIF Biological Term Annotations	1.0	null
BHY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06979
GATA2	ENCODE Transcription Factor Targets	1.0	null
mir99b	GeneRIF Biological Term Annotations	1.0	null
inhibited	GeneRIF Biological Term Annotations	1.0	null
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26295
fallopian tube	GTEx Tissue Gene Expression Profiles	1.0	0.958278
blood	GTEx Tissue Gene Expression Profiles	1.0	1.33392
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20634
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
SNU-449	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53729
EP300_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cyld	GeneRIF Biological Term Annotations	1.0	null
CHP-212	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00846
TCF12_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
leaf	GeneRIF Biological Term Annotations	1.0	null
RAD21	ENCODE Transcription Factor Targets	1.0	null
YMB1	CCLE Cell Line Gene CNV Profiles	1.0	1.58219
SAP30	ENCODE Transcription Factor Targets	1.0	null
TP63	ChEA Transcription Factor Targets	1.0	null
standard	GeneRIF Biological Term Annotations	1.0	null
pbx3	GeneRIF Biological Term Annotations	1.0	null
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01673
GATA3_SH-SY5Y_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
upregulation	GeneRIF Biological Term Annotations	1.0	null
defined	GeneRIF Biological Term Annotations	1.0	null
biomarkers	GeneRIF Biological Term Annotations	1.0	null
feedback	GeneRIF Biological Term Annotations	1.0	null
NCI-H1781	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53729
mir181a	GeneRIF Biological Term Annotations	1.0	null
COLO-704	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.84332
relapsedrefractory	GeneRIF Biological Term Annotations	1.0	null
KPNSI9S	CCLE Cell Line Gene CNV Profiles	1.0	1.69902
circulating	GeneRIF Biological Term Annotations	1.0	null
JM1	CCLE Cell Line Gene CNV Profiles	1.0	1.64422
stellate	GeneRIF Biological Term Annotations	1.0	null
suggested	GeneRIF Biological Term Annotations	1.0	null
mir181b	GeneRIF Biological Term Annotations	1.0	null
overexpressed	GeneRIF Biological Term Annotations	1.0	null
GATA2_SH-SY5Y_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
great	GeneRIF Biological Term Annotations	1.0	null
including	GeneRIF Biological Term Annotations	1.0	null
resistance	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
embryonic	GeneRIF Biological Term Annotations	1.0	null
outcome	GeneRIF Biological Term Annotations	1.0	null
GATA3_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lymphocytic	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04178
remodeling	GeneRIF Biological Term Annotations	1.0	null
hyperplastic	GeneRIF Biological Term Annotations	1.0	null
NCI-H810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29714
transcriptional	GeneRIF Biological Term Annotations	1.0	null
complete	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_Adult Liver	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
adenomas	GeneRIF Biological Term Annotations	1.0	null
clinical	GeneRIF Biological Term Annotations	1.0	null
colon	GeneRIF Biological Term Annotations	1.0	null
SPI1_HL-60_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir181abcd	GeneRIF Biological Term Annotations	1.0	null
JJ012	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.853214
miR-targeted genes in lymphocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
CREBBP_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.59006
EP300_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
tretinoin_homo sapiens_gpl6244_gds4180	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
negative	GeneRIF Biological Term Annotations	1.0	null
nonsmall	GeneRIF Biological Term Annotations	1.0	null
prostate	GeneRIF Biological Term Annotations	1.0	null
CAOV-4	COSMIC Cell Line Gene CNV Profiles	1.0	2.14116
RB1_KD_GSE50532_592_human_OSTEOBLASTS	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
GAMG	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37443
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976833
mir181a5p	GeneRIF Biological Term Annotations	1.0	null
cd4	GeneRIF Biological Term Annotations	1.0	null
links	GeneRIF Biological Term Annotations	1.0	null
extract	GeneRIF Biological Term Annotations	1.0	null
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
ovarian	GeneRIF Biological Term Annotations	1.0	null
SKRC31	CCLE Cell Line Gene CNV Profiles	1.0	1.49495
serve	GeneRIF Biological Term Annotations	1.0	null
NCIH526	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81215
TP63-23658742-EP156T-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
weakening	GeneRIF Biological Term Annotations	1.0	null
LCLC-103H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21893
H3K36me3_U2OS_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KYSE150	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71133
inflammation	GeneRIF Biological Term Annotations	1.0	null
plasma	GeneRIF Biological Term Annotations	1.0	null
SOX2_Deficiency_GDS4853_320_human_AZ-521 gastric cancer (GC) cell line - 12 Hours	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
NCI-H2052	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.825809
A-375	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.895675
pc3	GeneRIF Biological Term Annotations	1.0	null
promotes	GeneRIF Biological Term Annotations	1.0	null
RPMI-7951	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.572
verified	GeneRIF Biological Term Annotations	1.0	null
regulating	GeneRIF Biological Term Annotations	1.0	null
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962503
promote	GeneRIF Biological Term Annotations	1.0	null
after	GeneRIF Biological Term Annotations	1.0	null
cmet	GeneRIF Biological Term Annotations	1.0	null
pluripotent	GeneRIF Biological Term Annotations	1.0	null
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
proliferation	GeneRIF Biological Term Annotations	1.0	null
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
H3K36me3_bronchial epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34449
KPL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.890342
overall	GeneRIF Biological Term Annotations	1.0	null
CALU-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.923381
TCF12	ENCODE Transcription Factor Targets	1.0	null
direct	GeneRIF Biological Term Annotations	1.0	null
FOXA1_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
members	GeneRIF Biological Term Annotations	1.0	null
LP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.72034
epigenetic	GeneRIF Biological Term Annotations	1.0	null
EP300	ENCODE Transcription Factor Targets	1.0	null
prognosis	GeneRIF Biological Term Annotations	1.0	null
bcl2	GeneRIF Biological Term Annotations	1.0	null
inhibits	GeneRIF Biological Term Annotations	1.0	null
part	GeneRIF Biological Term Annotations	1.0	null
pten	GeneRIF Biological Term Annotations	1.0	null
patterns	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_neural cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EZH2_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
glioma	GeneRIF Biological Term Annotations	1.0	null
ac9	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
MXI1_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
contribute	GeneRIF Biological Term Annotations	1.0	null
MOLP-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.935291
chronic	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.48767
promoting	GeneRIF Biological Term Annotations	1.0	null
hcc	GeneRIF Biological Term Annotations	1.0	null
NTERA-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05322
correlation	GeneRIF Biological Term Annotations	1.0	null
symptoms	GeneRIF Biological Term Annotations	1.0	null
nfkappab	GeneRIF Biological Term Annotations	1.0	null
H3K9me1_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
aml	GeneRIF Biological Term Annotations	1.0	null
differential	GeneRIF Biological Term Annotations	1.0	null
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.824747
resulting	GeneRIF Biological Term Annotations	1.0	null
CAOV3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57658
H3K36me3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
responses	GeneRIF Biological Term Annotations	1.0	null
HUPT4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.94319
H3K27ac_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
poor	GeneRIF Biological Term Annotations	1.0	null
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1235
JIMT-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.870495
posttranscriptional	GeneRIF Biological Term Annotations	1.0	null
cyclase	GeneRIF Biological Term Annotations	1.0	null
aggressive	GeneRIF Biological Term Annotations	1.0	null
subtypes	GeneRIF Biological Term Annotations	1.0	null
gemcitabine	GeneRIF Biological Term Annotations	1.0	null
cytogenetically	GeneRIF Biological Term Annotations	1.0	null
PC-3	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.2703
hepatic	GeneRIF Biological Term Annotations	1.0	null
creb1	GeneRIF Biological Term Annotations	1.0	null
present	GeneRIF Biological Term Annotations	1.0	null
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.973022
CJM	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42105
KMS-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09564
downregulation	GeneRIF Biological Term Annotations	1.0	null
fos	GeneRIF Biological Term Annotations	1.0	null
upregulating	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
endothelialmirna	GeneRIF Biological Term Annotations	1.0	null
coronary	GeneRIF Biological Term Annotations	1.0	null
lung	GeneRIF Biological Term Annotations	1.0	null
inhibiting	GeneRIF Biological Term Annotations	1.0	null
parameters	GeneRIF Biological Term Annotations	1.0	null
SJCRH30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.66226
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.25941
pathways	GeneRIF Biological Term Annotations	1.0	null
values	GeneRIF Biological Term Annotations	1.0	null
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13132
MHHES1	CCLE Cell Line Gene CNV Profiles	1.0	1.3401
adult	GeneRIF Biological Term Annotations	1.0	null
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.94454
lats2	GeneRIF Biological Term Annotations	1.0	null
RBBP5	ENCODE Transcription Factor Targets	1.0	null
stat3	GeneRIF Biological Term Annotations	1.0	null
SUP-B15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32633
loop	GeneRIF Biological Term Annotations	1.0	null
T84	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.924227
implicate	GeneRIF Biological Term Annotations	1.0	null
TCF12_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
targeting	GeneRIF Biological Term Annotations	1.0	null
ZR7530	CCLE Cell Line Gene CNV Profiles	1.0	1.40501
CAOV4	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
migration	GeneRIF Biological Term Annotations	1.0	null
KARPAS-422	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09602
enhances	GeneRIF Biological Term Annotations	1.0	null
BT483	CCLE Cell Line Gene CNV Profiles	1.0	1.37395
H3K36me3_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ductal	GeneRIF Biological Term Annotations	1.0	null
C32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.64862
artery	GeneRIF Biological Term Annotations	1.0	null
klf6	GeneRIF Biological Term Annotations	1.0	null
PBX3_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BT-474	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03596
stage	GeneRIF Biological Term Annotations	1.0	null
lymphocytes	GeneRIF Biological Term Annotations	1.0	null
NCI-H1048	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.935018
invasion	GeneRIF Biological Term Annotations	1.0	null
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.80054
KMH2	CCLE Cell Line Gene CNV Profiles	1.0	2.1207
mir21	GeneRIF Biological Term Annotations	1.0	null
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13132
differentiation	GeneRIF Biological Term Annotations	1.0	null
DU4475	CCLE Cell Line Gene CNV Profiles	1.0	1.87979
HT1197	CCLE Cell Line Gene CNV Profiles	-1.0	-2.0017
directly	GeneRIF Biological Term Annotations	1.0	null
OCI-AML2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.77866
myeloid	GeneRIF Biological Term Annotations	1.0	null
CREBBP	ENCODE Transcription Factor Targets	1.0	null
REST	ENCODE Transcription Factor Targets	1.0	null
AR	ChEA Transcription Factor Targets	1.0	null
SNU407	CCLE Cell Line Gene CNV Profiles	1.0	1.66911
CAPAN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976833
YY1_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hoxa9	GeneRIF Biological Term Annotations	1.0	null
significant	GeneRIF Biological Term Annotations	1.0	null
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20634
MOR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29714
mir161	GeneRIF Biological Term Annotations	1.0	null
microrna181	GeneRIF Biological Term Annotations	1.0	null
actin	GeneRIF Biological Term Annotations	1.0	null
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31926
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39684
MM.1S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17367
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.895675
PBX3	ENCODE Transcription Factor Targets	1.0	null
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17697
YY1	ENCODE Transcription Factor Targets	1.0	null
Schizophrenia	HuGE Navigator Gene-Phenotype Associations	1.0	null
polyps	GeneRIF Biological Term Annotations	1.0	null
treatment	GeneRIF Biological Term Annotations	1.0	null
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3384
rap1b	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
H4K20me1_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
RBBP5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
highly	GeneRIF Biological Term Annotations	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
MXI1	ENCODE Transcription Factor Targets	1.0	null
correlated	GeneRIF Biological Term Annotations	1.0	null
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.17433
HDQP1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.65406
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41743
antipsychotic	GeneRIF Biological Term Annotations	1.0	null
mir181	GeneRIF Biological Term Annotations	1.0	null
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11323
cytoskeleton	GeneRIF Biological Term Annotations	1.0	null
parallels	GeneRIF Biological Term Annotations	1.0	null
ZR751	CCLE Cell Line Gene CNV Profiles	1.0	1.9639
SKLMS1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.12197
TC32	CCLE Cell Line Gene CNV Profiles	1.0	1.54609
molecular	GeneRIF Biological Term Annotations	1.0	null
TP63-22573176-HFKS-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
REST_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
miR-targeted genes in epithelium - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
SW1271	CCLE Cell Line Gene CNV Profiles	-1.0	-1.75542
microrna24	GeneRIF Biological Term Annotations	1.0	null
lesions	GeneRIF Biological Term Annotations	1.0	null
WSU-FSCCL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.860915
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.923381
NCIH1651	CCLE Cell Line Gene CNV Profiles	1.0	1.67495
il6	GeneRIF Biological Term Annotations	1.0	null
multidrugresistant	GeneRIF Biological Term Annotations	1.0	null
NCIH1385	CCLE Cell Line Gene CNV Profiles	1.0	1.92555
C32	CCLE Cell Line Gene CNV Profiles	1.0	2.51092
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32016
SPI1	ENCODE Transcription Factor Targets	1.0	null
effects	GeneRIF Biological Term Annotations	1.0	null
probably	GeneRIF Biological Term Annotations	1.0	null
reduced	GeneRIF Biological Term Annotations	1.0	null
late	GeneRIF Biological Term Annotations	1.0	null
mir153	GeneRIF Biological Term Annotations	1.0	null
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
chinese	GeneRIF Biological Term Annotations	1.0	null
NB1	CCLE Cell Line Gene CNV Profiles	1.0	1.68812
alternative	GeneRIF Biological Term Annotations	1.0	null
patient	GeneRIF Biological Term Annotations	1.0	null
ole	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_keratinocyte_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
tgfbeta1	GeneRIF Biological Term Annotations	1.0	null
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.937538
tmz	GeneRIF Biological Term Annotations	1.0	null
OCI-AML5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.935291
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45701
gbm	GeneRIF Biological Term Annotations	1.0	null
CTCF_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
adenocarcinoma	GeneRIF Biological Term Annotations	1.0	null
EP300_SK-N-SH_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
altered	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_cardiac mesoderm_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9ac_Brain Substantia Nigra	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
JHOS4	CCLE Cell Line Gene CNV Profiles	1.0	1.3307
POLR2AphosphoS5_HL-60_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
spleen	GTEx Tissue Gene Expression Profiles	1.0	1.24775
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31618
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32016
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46483
mir145	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS2_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pancreatic	GeneRIF Biological Term Annotations	1.0	null
mir221	GeneRIF Biological Term Annotations	1.0	null
improvement	GeneRIF Biological Term Annotations	1.0	null
U87MG	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51062
switch	GeneRIF Biological Term Annotations	1.0	null
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.1404
hoxa11	GeneRIF Biological Term Annotations	1.0	null
functions	GeneRIF Biological Term Annotations	1.0	null
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.71965
microrna	GeneRIF Biological Term Annotations	1.0	null
chemotherapeutic	GeneRIF Biological Term Annotations	1.0	null
survival	GeneRIF Biological Term Annotations	1.0	null
adenylyl	GeneRIF Biological Term Annotations	1.0	null
TALL1	CCLE Cell Line Gene CNV Profiles	-1.0	-3.19842
qrtpcr	GeneRIF Biological Term Annotations	1.0	null
miRNAs involved in DNA damage response(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
predictor	GeneRIF Biological Term Annotations	1.0	null
POLR2A_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-MES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.824747
potentiating	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
C32	COSMIC Cell Line Gene CNV Profiles	1.0	2.14116
enhancement	GeneRIF Biological Term Annotations	1.0	null
invasive	GeneRIF Biological Term Annotations	1.0	null
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.860915
cartilage	GeneRIF Biological Term Annotations	1.0	null
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.09942
HUH-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12264
negatively	GeneRIF Biological Term Annotations	1.0	null
subunits	GeneRIF Biological Term Annotations	1.0	null
105KC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.36098
NCIH508	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69802
YAPC	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46061
ifngamma	GeneRIF Biological Term Annotations	1.0	null
marker	GeneRIF Biological Term Annotations	1.0	null
nonfavorable	GeneRIF Biological Term Annotations	1.0	null
NCIH1299	CCLE Cell Line Gene CNV Profiles	-1.0	-1.62779
stem	GeneRIF Biological Term Annotations	1.0	null
NCI-H1770	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29714
agent	GeneRIF Biological Term Annotations	1.0	null
regulator	GeneRIF Biological Term Annotations	1.0	null
overexpression	GeneRIF Biological Term Annotations	1.0	null
oncomir	GeneRIF Biological Term Annotations	1.0	null
mir126	GeneRIF Biological Term Annotations	1.0	null
inhibitory	GeneRIF Biological Term Annotations	1.0	null
tissues	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
olea	GeneRIF Biological Term Annotations	1.0	null
display	GeneRIF Biological Term Annotations	1.0	null
let7d	GeneRIF Biological Term Annotations	1.0	null
NCIH650	CCLE Cell Line Gene CNV Profiles	-1.0	-1.66358
systematically	GeneRIF Biological Term Annotations	1.0	null
sessile	GeneRIF Biological Term Annotations	1.0	null
YAPC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.5911
GATA3	ENCODE Transcription Factor Targets	1.0	null
downstream	GeneRIF Biological Term Annotations	1.0	null
SNU46	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42083
20028859-TableS2	GeneSigDB Published Gene Signatures	1.0	null
increase	GeneRIF Biological Term Annotations	1.0	null
CALU6	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35371
16934749-Table3	GeneSigDB Published Gene Signatures	1.0	null
CAPAN1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32266
COLO 679	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01399
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39684
POLR2A_MCF-7_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_Brain Anterior Caudate	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K36me3_bronchial epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
schizophrenia	GAD Gene-Disease Associations	1.0	null
activated	GeneRIF Biological Term Annotations	1.0	null
positive	GeneRIF Biological Term Annotations	1.0	null
20448109-Table2	GeneSigDB Published Gene Signatures	1.0	null
decreased	GeneRIF Biological Term Annotations	1.0	null
AR-22383394-PROSTATE_CANCER-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
H3K79me2_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
GATA3_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
UMUC3	CCLE Cell Line Gene CNV Profiles	-1.0	-2.31592
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12264
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12994
benign	GeneRIF Biological Term Annotations	1.0	null
upregulated	GeneRIF Biological Term Annotations	1.0	null
microarray	GeneRIF Biological Term Annotations	1.0	null
MDAMB453	CCLE Cell Line Gene CNV Profiles	1.0	2.18744
PK59	CCLE Cell Line Gene CNV Profiles	-1.0	-1.9436
demonitrated	GeneRIF Biological Term Annotations	1.0	null
family	GeneRIF Biological Term Annotations	1.0	null
comprise	GeneRIF Biological Term Annotations	1.0	null
demonstrated	GeneRIF Biological Term Annotations	1.0	null