association	dataset	threshold value	standardized value
H3K36me3_bronchial epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.60922
mir185	GeneRIF Biological Term Annotations	1.0	null
KDM5B_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07653
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.353763
downregulating	GeneRIF Biological Term Annotations	1.0	null
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.283191
GTF2F1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_Stomach Smooth Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
KYSE520	CCLE Cell Line Gene CNV Profiles	1.0	1.46324
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1225
TE1	CCLE Cell Line Gene CNV Profiles	1.0	1.72505
lung	GeneRIF Biological Term Annotations	1.0	null
germ layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062733
EZH2_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
esophageal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.869794
MKN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.885103
H3K79me2_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_Neurosphere Cultured Cells Ganglionic Eminence Derived	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
chromatic	GeneRIF Biological Term Annotations	1.0	null
macroglia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063632
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.076352
dysregulation	GeneRIF Biological Term Annotations	1.0	null
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.316951
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.881592
H3K4me1_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H4K20me1_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
stage	GeneRIF Biological Term Annotations	1.0	null
PCM6	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4849
suppressor	GeneRIF Biological Term Annotations	1.0	null
feedback	GeneRIF Biological Term Annotations	1.0	null
hypersensitivity reaction type ii disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.056939
HNF4, COUP	MotifMap Predicted Transcription Factor Targets	1.0	null
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053109
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
spinal cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07373
colonic adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.379123
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21439
HS 936.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.829307
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19557
H3K79me2_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
tumorsuppressor	GeneRIF Biological Term Annotations	1.0	null
NCI-H2461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0173
FXR	MotifMap Predicted Transcription Factor Targets	1.0	null
hdlcholesterol	GeneRIF Biological Term Annotations	1.0	null
hepatocellular carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.231795
H3K27ac_heart_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
control	GeneRIF Biological Term Annotations	1.0	null
modification	GeneRIF Biological Term Annotations	1.0	null
low	GeneRIF Biological Term Annotations	1.0	null
more	GeneRIF Biological Term Annotations	1.0	null
OSC-20	COSMIC Cell Line Gene CNV Profiles	1.0	2.39327
H3K36me3_Breast Myoepithelial Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
invasion	GeneRIF Biological Term Annotations	1.0	null
KYSE-520	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24866
esophageal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.186764
eighteen	GeneRIF Biological Term Annotations	1.0	null
SNU182	CCLE Cell Line Gene CNV Profiles	1.0	2.44114
mir185mediated	GeneRIF Biological Term Annotations	1.0	null
neuromuscular junction disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.165001
H3K4me1_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mediated	GeneRIF Biological Term Annotations	1.0	null
glial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.083251
targets	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_heart_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	1.25432
H3K4me2_B cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
STAT3	ENCODE Transcription Factor Targets	1.0	null
E2F4	ENCODE Transcription Factor Targets	1.0	null
H3K4me1_IMR90	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CEBPB_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HMGN3	ENCODE Transcription Factor Targets	1.0	null
cholesterogenesis	GeneRIF Biological Term Annotations	1.0	null
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
CAL-12T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.47208
NCIH1435	CCLE Cell Line Gene CNV Profiles	1.0	1.55996
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22511
EKVX	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.84668
ribonucleoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.060183
respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.04703
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051328
HCC1171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.854246
astroglia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067409
u-251 mg cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.507064
NCOR1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CREBBP_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
blood vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056225
glioma	GeneRIF Biological Term Annotations	1.0	null
serum	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_kidney_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
NCOR1	ENCODE Transcription Factor Targets	1.0	null
F5	CCLE Cell Line Gene CNV Profiles	-1.0	-2.41579
RUNX3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16901
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21439
rcc	GeneRIF Biological Term Annotations	1.0	null
KPL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25977
CAL-12T	COSMIC Cell Line Gene CNV Profiles	1.0	2.39327
liver cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.257237
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.779816
breast carcinoma in situ	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.190168
H3K36me3_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cancers	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_G1E-ER4_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
squamous epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.095513
NCI-H1693	COSMIC Cell Line Gene CNV Profiles	1.0	2.39327
demonstrate	GeneRIF Biological Term Annotations	1.0	null
ovarian	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_Breast vHMEC	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
FOS_MCF 10A_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gkn1	GeneRIF Biological Term Annotations	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
sephs2	GeneRIF Biological Term Annotations	1.0	null
COLO201	CCLE Cell Line Gene CNV Profiles	-1.0	-2.55228
LCLC103H	CCLE Cell Line Gene CNV Profiles	-1.0	-1.88585
in situ carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.159302
rectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.100488
breast	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_spleen_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU1033	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5809
lower	GeneRIF Biological Term Annotations	1.0	null
leading	GeneRIF Biological Term Annotations	1.0	null
suppressed	GeneRIF Biological Term Annotations	1.0	null
exploits	GeneRIF Biological Term Annotations	1.0	null
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.882475
BJAB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.74206
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.219928
BRAF_drug inhibition_GSE42872_368_human_A375	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
vivo	GeneRIF Biological Term Annotations	1.0	null
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041111
modulation	GeneRIF Biological Term Annotations	1.0	null
TK-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.864388
ags cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.378748
neuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047481
artery wall	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.160191
DETROIT562	CCLE Cell Line Gene CNV Profiles	1.0	1.89347
suppress	GeneRIF Biological Term Annotations	1.0	null
increased bone volume	MGI Mouse Phenotype Associations 2023	1.0	null
forebrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052609
fasn	GeneRIF Biological Term Annotations	1.0	null
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.43867
initiation	GeneRIF Biological Term Annotations	1.0	null
central	GeneRIF Biological Term Annotations	1.0	null
JL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.7405
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19089
H3K36me3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KMS-28PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.42093
glioblastoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079275
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.796232
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12177
H4K20me1_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
dnmt1	GeneRIF Biological Term Annotations	1.0	null
mirnas	GeneRIF Biological Term Annotations	1.0	null
ability	GeneRIF Biological Term Annotations	1.0	null
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052758
COLO 679	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.82562
SU.86.86	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.881592
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56446
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49402
CREBBP	ENCODE Transcription Factor Targets	1.0	null
showed	GeneRIF Biological Term Annotations	1.0	null
A4/FUK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.93716
H3K4me2_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
KDM5B	ENCODE Transcription Factor Targets	1.0	null
repress	GeneRIF Biological Term Annotations	1.0	null
KMS28BM	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44966
PAX5	ENCODE Transcription Factor Targets	1.0	null
metastasis	GeneRIF Biological Term Annotations	1.0	null
624 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03907
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49402
pancreatic adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.244232
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1422
glioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.444499
H2AK5ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
TP53-22573176-HFKS-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
KP4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.954308
u-87mg cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.267102
prostate gland cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.347778
H3K9me3_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
inhibited	GeneRIF Biological Term Annotations	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01163
gastric epithelium cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.717472
GSK3_INHIBITION_GDS4043_459_human_MLL leukemia cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
akt	GeneRIF Biological Term Annotations	1.0	null
cerebral cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055349
H3K79me2_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SK-MEL-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11626
cerebral hemisphere	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054491
GATA1	ENCODE Transcription Factor Targets	1.0	null
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.829307
stimulation	GeneRIF Biological Term Annotations	1.0	null
hif1	GeneRIF Biological Term Annotations	1.0	null
NCIH292	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50408
FOS_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MYC	ENCODE Transcription Factor Targets	1.0	null
pre-malignant neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.113635
astrocytoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070822
kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065142
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.871707
unveil	GeneRIF Biological Term Annotations	1.0	null
hepatoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.268482
exists	GeneRIF Biological Term Annotations	1.0	null
SF172	CCLE Cell Line Gene CNV Profiles	1.0	1.62653
neuromuscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.092618
cycle	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
astrocytoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074828
differential	GeneRIF Biological Term Annotations	1.0	null
HS294T	CCLE Cell Line Gene CNV Profiles	1.0	1.76169
increased bone mineral density	MGI Mouse Phenotype Associations 2023	1.0	null
CHAGOK1	CCLE Cell Line Gene CNV Profiles	1.0	1.44088
NCI-H810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41952
upregulation	GeneRIF Biological Term Annotations	1.0	null
selective	GeneRIF Biological Term Annotations	1.0	null
BT-483	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.890434
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041484
POLR2A_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cdc42	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
first	GeneRIF Biological Term Annotations	1.0	null
SPI1	ChEA Transcription Factor Targets	1.0	null
H4K20me1_IMR90	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
promise	GeneRIF Biological Term Annotations	1.0	null
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.907457
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.977516
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07653
KAT2B	ENCODE Transcription Factor Targets	1.0	null
vegfr2	GeneRIF Biological Term Annotations	1.0	null
CJM	CCLE Cell Line Gene CNV Profiles	1.0	1.61053
srebp2	GeneRIF Biological Term Annotations	1.0	null
reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.382223
H2AFZ_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
20103675-Table1a	GeneSigDB Published Gene Signatures	1.0	null
increased bone trabecula number	MGI Mouse Phenotype Associations 2023	1.0	null
H3K79me2_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K9me3_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CAOV3	CCLE Cell Line Gene CNV Profiles	1.0	1.63274
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.871707
their	GeneRIF Biological Term Annotations	1.0	null
cognitive disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.071213
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.95517
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054376
rnai effector complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.529618
H3255	COSMIC Cell Line Gene CNV Profiles	1.0	2.39327
events	GeneRIF Biological Term Annotations	1.0	null
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.95517
SUDHL6	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60327
PAX5_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
RERFLCKJ	CCLE Cell Line Gene CNV Profiles	1.0	1.39271
thereby	GeneRIF Biological Term Annotations	1.0	null
19807731-Figure1	GeneSigDB Published Gene Signatures	1.0	null
Lung Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061517
density	GeneRIF Biological Term Annotations	1.0	null
enhanced osteoblast differentiation	MGI Mouse Phenotype Associations 2023	1.0	null
SW837	CCLE Cell Line Gene CNV Profiles	1.0	1.49279
micrornas	GeneRIF Biological Term Annotations	1.0	null
epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.364513
EZH2_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_Stomach Smooth Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
KNS81	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49853
early	GeneRIF Biological Term Annotations	1.0	null
colorectal	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_placenta_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
disease of mental health	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046892
pten	GeneRIF Biological Term Annotations	1.0	null
lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053453
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061218
H3K79me2_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
global	GeneRIF Biological Term Annotations	1.0	null
HCC1263	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07653
H3K4me1_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
STAT6	MotifMap Predicted Transcription Factor Targets	1.0	null
leads	GeneRIF Biological Term Annotations	1.0	null
regulatory	GeneRIF Biological Term Annotations	1.0	null
HMGN3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
decreased susceptibility to osteoporosis	MGI Mouse Phenotype Associations 2023	1.0	null
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060998
glioblastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.076876
19895320-Table2	GeneSigDB Published Gene Signatures	1.0	null
methyltransferases	GeneRIF Biological Term Annotations	1.0	null
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.296013
psychotic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.369628
H3K79me2_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.566443
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.824796
H3K4me1_Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H4K20me1_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
myasthenia gravis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.178126
STAT3_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAX_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
neuroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057547
Cell Transformation, Neoplastic	CTD Gene-Disease Associations	1.0	2.88009
NCIH3255	CCLE Cell Line Gene CNV Profiles	1.0	1.34213
increased osteoblast proliferation	MGI Mouse Phenotype Associations 2023	1.0	null
NCIH2085	CCLE Cell Line Gene CNV Profiles	1.0	1.64335
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00914
H3K9me3_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052133
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
microvessels	GeneRIF Biological Term Annotations	1.0	null
JHOM2B	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58398
MITF	ChEA Transcription Factor Targets	1.0	null
H3K4me1_erythroblast_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
COLO679	CCLE Cell Line Gene CNV Profiles	1.0	2.10245
malignant glioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.268687
MITF-21258399-MELANOMA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
aspc-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.512171
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.84068
CTCF_LNCaP clone FGC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066785
rectal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.345558
requires	GeneRIF Biological Term Annotations	1.0	null
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.931722
dna	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
Kidney Diseases	CTD Gene-Disease Associations	1.0	1.05648
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.829307
invasive	GeneRIF Biological Term Annotations	1.0	null
JHESOAD1	CCLE Cell Line Gene CNV Profiles	1.0	2.46322
H3K27ac_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
prostate	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
astrocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068419
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00914
formation	GeneRIF Biological Term Annotations	1.0	null
H3K79me2_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.885103
thymus cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.209918
methylation	GeneRIF Biological Term Annotations	1.0	null
CEBPB	ChEA Transcription Factor Targets	1.0	null
K-562	COSMIC Cell Line Gene CNV Profiles	1.0	2.39327
H3K27ac_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
E2F4_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.824084
H3K36me3_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.293637
USF1	ENCODE Transcription Factor Targets	1.0	null
nasopharyngeal	GeneRIF Biological Term Annotations	1.0	null
KARPAS299	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36426
mirna185	GeneRIF Biological Term Annotations	1.0	null
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
H3K4me1_bone marrow_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
MYC_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.261284
COLO775	CCLE Cell Line Gene CNV Profiles	-1.0	-1.75025
atr	GeneRIF Biological Term Annotations	1.0	null
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
NCI-H1581	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.945021
regulating	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
vitro	GeneRIF Biological Term Annotations	1.0	null
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.977516
GATA1_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_mononuclear cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SNU-182	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.17479
RNF2	ENCODE Transcription Factor Targets	1.0	null
autoregulatory	GeneRIF Biological Term Annotations	1.0	null
CBX3	ENCODE Transcription Factor Targets	1.0	null
mir107	GeneRIF Biological Term Annotations	1.0	null
rhoa	GeneRIF Biological Term Annotations	1.0	null
esophageal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.516497
colonic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079843
USF1_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
colorectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.077095
autoimmune disease of the nervous system	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.170054
renal cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.606916
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080132
H3K4me1_MEL cell line_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053361
CEBPB	ENCODE Transcription Factor Targets	1.0	null
H3K36me3_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gastric	GeneRIF Biological Term Annotations	1.0	null
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69837
H3K4me1_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040275
H3K4me1_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_Brain Inferior Temporal Lobe	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
recurrence	GeneRIF Biological Term Annotations	1.0	null
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.885103
gastric mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.452969
A4FUK	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68011
thoracic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.256299
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.627081
esophageal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.189729
MAX_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
K562	CCLE Cell Line Gene CNV Profiles	1.0	1.85869
lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051768
androgen	GeneRIF Biological Term Annotations	1.0	null
cisplatin	GeneRIF Biological Term Annotations	1.0	null
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.881592
carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.32205
MYC_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
homeostasis	GeneRIF Biological Term Annotations	1.0	null
internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063675
NCIH1373	CCLE Cell Line Gene CNV Profiles	-1.0	-1.98057
DU 145	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3297
A-427	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.931722
SNU-182	COSMIC Cell Line Gene CNV Profiles	1.0	2.39327
H3K36me3_liver_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gastric cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.67495
mir133b	GeneRIF Biological Term Annotations	1.0	null
uptake	GeneRIF Biological Term Annotations	1.0	null
proliferation	GeneRIF Biological Term Annotations	1.0	null
srebp1	GeneRIF Biological Term Annotations	1.0	null
soft tissue sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.608124
contributs	GeneRIF Biological Term Annotations	1.0	null
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053363
gastric adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.335968
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.45215
prostate gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.229568
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.824796
H3K4me1_ES-Bruce4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
mir223	GeneRIF Biological Term Annotations	1.0	null
GCIY	CCLE Cell Line Gene CNV Profiles	-1.0	-2.78037
H3K36me3_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.7695
decreased bone trabecular spacing	MGI Mouse Phenotype Associations 2023	1.0	null
immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042253
p0001	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_Skeletal Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
inhibiting	GeneRIF Biological Term Annotations	1.0	null
srebp1c	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
esophageal squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.852948
H3K4me1_heart_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
rate	GeneRIF Biological Term Annotations	1.0	null
SW 837	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09133
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.784755
lipogenesis	GeneRIF Biological Term Annotations	1.0	null
KMS21BM	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00127
normal	GeneRIF Biological Term Annotations	1.0	null
colorectal adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.354826
Ovarian Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.173543
ductal carcinoma in situ	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.1936
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976793
male reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.415773
MYC_MCF-7_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24866
mir96	GeneRIF Biological Term Annotations	1.0	null
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2605
EZH2_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH1755	CCLE Cell Line Gene CNV Profiles	1.0	1.52537
H3K9ac_Breast Myoepithelial Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
radioresistance	GeneRIF Biological Term Annotations	1.0	null
neural tube	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.43414
TP53	ChEA Transcription Factor Targets	1.0	null
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.954308
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3447
pancreatic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.11797
mir152	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
atherosclerotic plaque	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.1866
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060125
demonstrated	GeneRIF Biological Term Annotations	1.0	null
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11626
SOX10	MotifMap Predicted Transcription Factor Targets	1.0	null
male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064431
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.157602
H3K9ac_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.072042
eGFP-HDAC8_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.256234
brain cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07521
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.78348
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14304
H3K36me3_small intestine_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K79me1_IMR90	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.407073
gastric cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.690042
MOLM6	CCLE Cell Line Gene CNV Profiles	1.0	1.36383
prognostic	GeneRIF Biological Term Annotations	1.0	null
Precancerous Conditions	CTD Gene-Disease Associations	1.0	1.12357
Eye Diseases	CTD Gene-Disease Associations	1.0	1.19802
hep-g2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.213471
prostate cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.422515
USF1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_megakaryocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
altered	GeneRIF Biological Term Annotations	1.0	null
regulator	GeneRIF Biological Term Annotations	1.0	null
risc complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.550186
survival	GeneRIF Biological Term Annotations	1.0	null
pneumonia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.094462
KDM1A	ENCODE Transcription Factor Targets	1.0	null
breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.256652
H3K4me1_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
H3K36me3_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.316224
H3K4me3_H1 Derived Mesenchymal Stem Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
several	GeneRIF Biological Term Annotations	1.0	null
axis	GeneRIF Biological Term Annotations	1.0	null
induction	GeneRIF Biological Term Annotations	1.0	null
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
DMS 53	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.66441
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976793
regions	GeneRIF Biological Term Annotations	1.0	null
gastric antrum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.610541
srbi	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_HL-60_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
had	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_Colonic Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
six1	GeneRIF Biological Term Annotations	1.0	null
mir185dependent	GeneRIF Biological Term Annotations	1.0	null
resistance	GeneRIF Biological Term Annotations	1.0	null
inhibits	GeneRIF Biological Term Annotations	1.0	null
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21439
NCI-H1869	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855701
MicroRNAs in cardiomyocyte hypertrophy(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
HCC1897	CCLE Cell Line Gene CNV Profiles	-1.0	-2.21022
KYSE-520	COSMIC Cell Line Gene CNV Profiles	1.0	2.39327
immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047611
TYKNU	CCLE Cell Line Gene CNV Profiles	-1.0	-1.78889
liver cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.210589
one	GeneRIF Biological Term Annotations	1.0	null
CHD4	ENCODE Transcription Factor Targets	1.0	null
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
NCI-H2085	COSMIC Cell Line Gene CNV Profiles	1.0	2.39327
pancreatic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.11797
RUNX3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055412
STAT3_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.247719
A101D	CCLE Cell Line Gene CNV Profiles	1.0	1.98883
HS 746T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16295
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054883
PAX5_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9me3_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
significant	GeneRIF Biological Term Annotations	1.0	null
hepatoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.32753
correlated	GeneRIF Biological Term Annotations	1.0	null
SIRT6	ENCODE Transcription Factor Targets	1.0	null
frequently	GeneRIF Biological Term Annotations	1.0	null
ectoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.083688
CAL148	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57163
activities	GeneRIF Biological Term Annotations	1.0	null
KMS-28BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38889
FOS_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SPI1-20176806-THIOMACROPHAGE-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
poor	GeneRIF Biological Term Annotations	1.0	null
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.084288
H3K79me2_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
macrophage foam cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.465723
LN-229	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.944071
H3K27ac_B cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
kyse-30 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.11774
Hyperplasia	CTD Gene-Disease Associations	1.0	1.12014
liver carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.229716
predict	GeneRIF Biological Term Annotations	1.0	null
hypersensitivity reaction disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050707
KMS-26	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2605
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49497
KDM1A_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
tunica intima vasorum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.174174
skeletal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058644
H3K4me1_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
large intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0762
vegfa	GeneRIF Biological Term Annotations	1.0	null
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061578
PHF8	ENCODE Transcription Factor Targets	1.0	null
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1422
kidney cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.344818
skeletal muscle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069966
hepatic	GeneRIF Biological Term Annotations	1.0	null
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.954308
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.885103
TT	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33082
including	GeneRIF Biological Term Annotations	1.0	null
A101D	COSMIC Cell Line Gene CNV Profiles	1.0	2.39327
monitors	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22356
targeted	GeneRIF Biological Term Annotations	1.0	null
ovarian cancer	GAD Gene-Disease Associations	1.0	null
respectively	GeneRIF Biological Term Annotations	1.0	null
led	GeneRIF Biological Term Annotations	1.0	null
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.42164
H3K27ac_CD4+ CD25- CD45RO+ Memory Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.182112
H3K27ac_heart_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
astroglial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0679
glioma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.108272
CEBPB-20176806-THIOMACROPHAGE-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.775249
STAT1_01_21	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	0.8225
DMS53	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68594
H3K36me3_keratinocyte_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HT29	CCLE Cell Line Gene CNV Profiles	1.0	1.46864
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83718
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16901
glia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081582
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.292793
MYC_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mirna	GeneRIF Biological Term Annotations	1.0	null
schizophrenia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.370737
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.399871
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058249
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5562
H3K4me1_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
MTA3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RUNX3	ENCODE Transcription Factor Targets	1.0	null
pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.091419
pancreatic cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.123136
NCIH1693	CCLE Cell Line Gene CNV Profiles	1.0	3.21755
POLR2A_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K79me2_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
gastric epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.806882
bcell	GeneRIF Biological Term Annotations	1.0	null
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.261964
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.627889
level	GeneRIF Biological Term Annotations	1.0	null
astroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0679
squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.108163
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.231448
wnt2b	GeneRIF Biological Term Annotations	1.0	null
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041171
MTA3	ENCODE Transcription Factor Targets	1.0	null
biomarker	GeneRIF Biological Term Annotations	1.0	null
targeting	GeneRIF Biological Term Annotations	1.0	null
epigenetic	GeneRIF Biological Term Annotations	1.0	null
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.977516
esophageal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.107481
increased bone ossification	MGI Mouse Phenotype Associations 2023	1.0	null
OVKATE	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36371
RNF2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.36825
CAL12T	CCLE Cell Line Gene CNV Profiles	1.0	2.2007
LCLC-103H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.90234
gastric epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.926764
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.824796
cmyc	GeneRIF Biological Term Annotations	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
hepatocellular	GeneRIF Biological Term Annotations	1.0	null
cerebral lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.226411
investigated	GeneRIF Biological Term Annotations	1.0	null
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.78998
SNU478	CCLE Cell Line Gene CNV Profiles	1.0	1.37703
MYC_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cellular	GeneRIF Biological Term Annotations	1.0	null
telencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053887
increased trabecular bone thickness	MGI Mouse Phenotype Associations 2023	1.0	null
independent	GeneRIF Biological Term Annotations	1.0	null
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.324239
liver cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067732
hmgcr	GeneRIF Biological Term Annotations	1.0	null
LU65	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37914
increased alkaline phosphatase activity	MGI Mouse Phenotype Associations 2023	1.0	null
H3K9me3_fibroblast of lung_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_GM06990_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gpx2	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
brain cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070166
gastric cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.998473
H3K4me1_megakaryocyte_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.10305
relapse	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SIRT6_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
negative	GeneRIF Biological Term Annotations	1.0	null
p0007	GeneRIF Biological Term Annotations	1.0	null
neural plate	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.157345
H3K36me3_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTF2F1	ENCODE Transcription Factor Targets	1.0	null
gastrointestinal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074789
decreased trabecular bone connectivity density	MGI Mouse Phenotype Associations 2023	1.0	null
SUZ12_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pancreatic	GeneRIF Biological Term Annotations	1.0	null
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.78522
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
oncogenic	GeneRIF Biological Term Annotations	1.0	null
SUZ12	ENCODE Transcription Factor Targets	1.0	null
ephb2	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_BJ_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
localized	GeneRIF Biological Term Annotations	1.0	null
CHD4_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.396087
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.931722
KAT2B_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hcc	GeneRIF Biological Term Annotations	1.0	null
mir1853p	GeneRIF Biological Term Annotations	1.0	null
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.824084
eGFP-NR4A1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
liver	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075803
RPMI8226	CCLE Cell Line Gene CNV Profiles	-1.0	-1.97569
COLO 857	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.871707
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055279
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.443731
overexpression	GeneRIF Biological Term Annotations	1.0	null
KDM5A	ENCODE Transcription Factor Targets	1.0	null
USF1_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Carcinoma, Non-Small-Cell Lung	HuGE Navigator Gene-Phenotype Associations	1.0	null
NCI-H2228	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.42164
H3K4me2_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CL-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.889576
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03091
glial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.082364
thymoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.227642
cholesterol	GeneRIF Biological Term Annotations	1.0	null
TE-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.39327
H3K9ac_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
PHF8_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abomasum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.439507
brain cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06568
Breast Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.741111
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.882475
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.087531
idiopathic interstitial pneumonia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.188022
POLR2A_bone marrow macrophage_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054858
miapaca-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.358919
H3K27ac_H1 BMP4 Derived Trophoblast Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K4me2_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5562
H3K4me1_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
directly	GeneRIF Biological Term Annotations	1.0	null
holds	GeneRIF Biological Term Annotations	1.0	null
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3447
FOS	ENCODE Transcription Factor Targets	1.0	null
H3K9me3_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mrnas	GeneRIF Biological Term Annotations	1.0	null
esophageal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.240847
vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055151
skeletal muscle cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071094
MAX	ENCODE Transcription Factor Targets	1.0	null
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
inhibit	GeneRIF Biological Term Annotations	1.0	null
idiopathic pulmonary fibrosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.215992
CBX3_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH2286	CCLE Cell Line Gene CNV Profiles	1.0	1.86993
H3K4me1_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
20448109-Table2	GeneSigDB Published Gene Signatures	1.0	null
higher	GeneRIF Biological Term Annotations	1.0	null
inhibition	GeneRIF Biological Term Annotations	1.0	null
20028859-TableS2	GeneSigDB Published Gene Signatures	1.0	null
syndrome	GeneRIF Biological Term Annotations	1.0	null
stomach	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.381379
statistically	GeneRIF Biological Term Annotations	1.0	null
Cholestasis	CTD Gene-Disease Associations	1.0	2.88009
HS 294T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.03258
H3K36me3_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mzb1	GeneRIF Biological Term Annotations	1.0	null
b-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.242983
H3K4me1_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
chromosomal	GeneRIF Biological Term Annotations	1.0	null