association	dataset	threshold value	standardized value
105KC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.826659
H3K36me3_iPS DF 6.9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060286
BICR22	CCLE Cell Line Gene CNV Profiles	1.0	2.29374
pc-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.260945
JIMT-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38158
lymphoblastic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.089482
CTCF_cerebellum_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
prostate	GeneRIF Biological Term Annotations	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.357802
H3K27me3_megakaryocyte_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
homolog2	GeneRIF Biological Term Annotations	1.0	null
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22962
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.8121
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09876
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05306
respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.206913
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.846403
H3K4me3_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059205
ovarian surface epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.614974
when	GeneRIF Biological Term Annotations	1.0	null
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47222
SNB19	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40246
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47167
H3K4me1_kidney_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
T3M4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5006
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.941936
CHK1_KD_GSE54267_672_human_U2OS	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.058318
hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051712
uterine cervix	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.094692
LUDLU1	CCLE Cell Line Gene CNV Profiles	1.0	1.63791
ovary cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.286736
rhinitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.556344
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33477
PUR1	MotifMap Predicted Transcription Factor Targets	1.0	null
prognosis	GeneRIF Biological Term Annotations	1.0	null
RAD21_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
RUNX1	ChEA Transcription Factor Targets	1.0	null
SUIT-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.826659
H3K4me1_Panc1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
nose disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.517265
TP63-23658742-EP156T-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ovary	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079797
acts	GeneRIF Biological Term Annotations	1.0	null
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040496
H3K27me3_megakaryocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062302
HL-60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55586
H3K4me1_megakaryocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
ovary epithelial cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.215992
HDAC2	ENCODE Transcription Factor Targets	1.0	null
biomarker	GeneRIF Biological Term Annotations	1.0	null
RL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05344
KLM1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40228
RAD21_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1703	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.879613
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22273
BHY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50669
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.08225
CTCF_brain_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.070292
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08882
EKVX	CCLE Cell Line Gene CNV Profiles	1.0	1.48555
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.826659
b7h3	GeneRIF Biological Term Annotations	1.0	null
axis	GeneRIF Biological Term Annotations	1.0	null
CTCF_G1E-ER4_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.065884
H3K4me1_Penis Foreskin Keratinocyte Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
UOK101	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41322
CTCF_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
prostate gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.076252
POLR2A	ENCODE Transcription Factor Targets	1.0	null
SW 620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11627
du-145 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.319134
NCI-H1648	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14445
BHY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39755
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056838
H3K4me1_CH12.LX_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55748
SNU213	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61015
H3K4me1_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
oncogenic	GeneRIF Biological Term Annotations	1.0	null
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060225
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09876
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
H3K4me1_brain_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
KP2	CCLE Cell Line Gene CNV Profiles	-1.0	-2.03104
blood cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065212
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061228
leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073287
H3K4me3_kidney_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
SMC3_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FLI1-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
NCI-H2126	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.04663
lipopolysaccharidesinduced	GeneRIF Biological Term Annotations	1.0	null
CTCF_lung_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EZH2_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
neck	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.085937
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	1.03271
HUG1N	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71968
invasive	GeneRIF Biological Term Annotations	1.0	null
NCIH1693	CCLE Cell Line Gene CNV Profiles	1.0	1.50066
connective tissue cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044566
prostate gland cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080947
NCI-H510A	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
SW1116	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46665
decidua	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.293508
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.27595
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.18985
thyroid gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.250953
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18928
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064573
musculoskeletal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043738
HCC1937	CCLE Cell Line Gene CNV Profiles	-1.0	-2.26653
CTCF_G1E-ER4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_limb_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
extracellular region part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.052765
CTCF_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ovary epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.495701
throat	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.231206
reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042939
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16819
C170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55586
H3K36me3_H7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
jurkat cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.3356
immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048904
silenced	GeneRIF Biological Term Annotations	1.0	null
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.826659
H3K36me3_keratinocyte_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KURAMOCHI	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32778
FLI1	ChEA Transcription Factor Targets	1.0	null
CHD7_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
predictive	GeneRIF Biological Term Annotations	1.0	null
lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.076858
CTCF_ES-Bruce4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1359	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81604
allergic rhinitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.615138
more	GeneRIF Biological Term Annotations	1.0	null
Fetal Brain Male	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-1.80501
ZC3H11A	ENCODE Transcription Factor Targets	1.0	null
dab2	GeneRIF Biological Term Annotations	1.0	null
A-427	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.941936
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.986647
predictor	GeneRIF Biological Term Annotations	1.0	null
SKMM2	CCLE Cell Line Gene CNV Profiles	1.0	1.52588
CTCF_C2C12_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PXR (PXR:RXR)	MotifMap Predicted Transcription Factor Targets	1.0	null
CTCF_kidney_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
bortezomib	GeneRIF Biological Term Annotations	1.0	null
NCIH1385	CCLE Cell Line Gene CNV Profiles	1.0	1.42736
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04862
H3K4me1_CH12.LX_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
HCC1806	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05995
OVCAR-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19278
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.898488
NCIH146	CCLE Cell Line Gene CNV Profiles	1.0	1.61986
CL14	CCLE Cell Line Gene CNV Profiles	-1.0	-2.17859
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.941936
male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064574
female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.354131
H3K4me1_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
EPLC272H	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63791
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059925
upper respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.44129
NCIH1963	CCLE Cell Line Gene CNV Profiles	1.0	2.53231
SAP30	ENCODE Transcription Factor Targets	1.0	null
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
GATA1	ChEA Transcription Factor Targets	1.0	null
HDAC2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
bronchoalveolar system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.257237
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
lymphocytic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.102099
acute lymphoblastic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.090633
bronchial disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.194865
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33477
STAT6	MotifMap Predicted Transcription Factor Targets	1.0	null
CTCF_CH12.LX_mm9_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059374
H3K27ac_kidney_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
endometriosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.182957
indicated	GeneRIF Biological Term Annotations	1.0	null
breast	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_Breast Myoepithelial Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
cervical mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.289226
RI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15818
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074412
targeted	GeneRIF Biological Term Annotations	1.0	null
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.477909
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.886584
CHD7	ENCODE Transcription Factor Targets	1.0	null
CTCF_bone marrow macrophage_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_ES-E14_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_G1E-ER4_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
outcome	GeneRIF Biological Term Annotations	1.0	null
KYSE-510	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.45571
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05444
clear	GeneRIF Biological Term Annotations	1.0	null
reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.336876
independent	GeneRIF Biological Term Annotations	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07751
kaposi's sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.28616
lymphoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063189
H3K36me3_cardiac mesoderm_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_cortical plate_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mature t-cell and nk-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.239799
COLO680N	CCLE Cell Line Gene CNV Profiles	-1.0	-1.85614
malignant ovarian surface epithelial-stromal neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.217352
lymphoblastoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.105182
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.250953
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.853438
EZH2	ENCODE Transcription Factor Targets	1.0	null
disabled	GeneRIF Biological Term Annotations	1.0	null
TP63-22573176-HFKS-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
RAMOS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37814
HCC1187	CCLE Cell Line Gene CNV Profiles	1.0	2.13431
EKVX	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15537
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.85302
biomarkers	GeneRIF Biological Term Annotations	1.0	null
respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046929
RKN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17102
DU 145	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.59123
KYSE510	CCLE Cell Line Gene CNV Profiles	1.0	2.93201
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069719
promising	GeneRIF Biological Term Annotations	1.0	null
CTCF_MEL cell line_mm9_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
interleukin-23 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.372749
JIMT1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50157
RBBP5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
respiratory epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.321685
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.941936
bone cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066145
villus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.220378
RAD21_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RAD21-21589869-MESC-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
COR-L47	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.77492
CTCF_liver_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JHOC5	CCLE Cell Line Gene CNV Profiles	1.0	1.39699
NCIH747	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20405
OCIMY5	CCLE Cell Line Gene CNV Profiles	1.0	1.9707
H3K36me3_iPS DF 19.11	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Skeletal Muscle Male	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-1.14223
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28906
non-hodgkin lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.095882
risk	GeneRIF Biological Term Annotations	1.0	null
HCC60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.879613
TP63	ChEA Transcription Factor Targets	1.0	null
DU-145	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.8121
CTCF_MEL cell line_mm9_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SW 480	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30489
improve	GeneRIF Biological Term Annotations	1.0	null
thyroid nodule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.644479
il6	GeneRIF Biological Term Annotations	1.0	null
WHSC1	ENCODE Transcription Factor Targets	1.0	null
RUNX1-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
SW 1990	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38158
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.941936
15284443-Table6	GeneSigDB Published Gene Signatures	1.0	null
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41378
interleukin-12 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.363185
ovarian carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.219057
tlymphoma	GeneRIF Biological Term Annotations	1.0	null
ptclnos	GeneRIF Biological Term Annotations	1.0	null
leads	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_megakaryocyte_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
SMC3	ENCODE Transcription Factor Targets	1.0	null
nasal cavity disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.556344
WHSC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
identify	GeneRIF Biological Term Annotations	1.0	null
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44699
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09876
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060195
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09876
CTCF_thymus_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02435
capability	GeneRIF Biological Term Annotations	1.0	null
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060315
NCIH2126	CCLE Cell Line Gene CNV Profiles	-1.0	-2.27453
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17753
CTCF_MEL cell line_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03366
1321N1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00758
NCIH510	CCLE Cell Line Gene CNV Profiles	1.0	1.75529
production	GeneRIF Biological Term Annotations	1.0	null
NCI-H1963	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064478
osteosarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.215341
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041134
HSC3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59101
MHHCALL2	CCLE Cell Line Gene CNV Profiles	1.0	1.52004
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.853438
il12p40	GeneRIF Biological Term Annotations	1.0	null
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06939
SNU-216	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.981652
existing	GeneRIF Biological Term Annotations	1.0	null
rasmediated	GeneRIF Biological Term Annotations	1.0	null
UACC893	CCLE Cell Line Gene CNV Profiles	-1.0	-1.728
asthma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.211597
CTCF_embryonic fibroblast_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
potentially	GeneRIF Biological Term Annotations	1.0	null
TCCPAN2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32981
RAD21	ChEA Transcription Factor Targets	1.0	null
acute lymphoblastic leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.224645
endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.182086
H3K4me1_placenta_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061079
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070178
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23513
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05819
HCFC1_ES-E14_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
prostate cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.094509
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66322
obstructive lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.165001
nose	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.651371
non-small cell lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.083288
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25796
bone cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.100599
lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.061777
hematopoietic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069333
NCIH889	CCLE Cell Line Gene CNV Profiles	1.0	2.11139
H3K4me1_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08119
SU8686	CCLE Cell Line Gene CNV Profiles	-1.0	-1.95408
bone cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.102253
SU-DHL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15818
HCFC1	ENCODE Transcription Factor Targets	1.0	null
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.407919
SMC3_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CORL95	CCLE Cell Line Gene CNV Profiles	1.0	1.70687
RI1	CCLE Cell Line Gene CNV Profiles	1.0	1.58025
CTCF	ENCODE Transcription Factor Targets	1.0	null
uterus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067755
NCIH69	CCLE Cell Line Gene CNV Profiles	1.0	1.67923
SW 900	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28919
GATA1-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.54244
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042398
DOV13	CCLE Cell Line Gene CNV Profiles	1.0	1.78413
RAD21	ENCODE Transcription Factor Targets	1.0	null
CTCF_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
renal	GeneRIF Biological Term Annotations	1.0	null
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.67535
LXFL529	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03003
diagnosis	GeneRIF Biological Term Annotations	1.0	null
respiratory mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.622639
leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068893
OAW42	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.826659
aggressive	GeneRIF Biological Term Annotations	1.0	null
20028859-TableS2	GeneSigDB Published Gene Signatures	1.0	null
SAP30_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_olfactory bulb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_testis_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
related	GeneRIF Biological Term Annotations	1.0	null
POLR2A_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.96281
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.941936
COLO668	CCLE Cell Line Gene CNV Profiles	1.0	1.45672
KYSE-510	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
COV644	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4143
H3K4me1_limb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
ZC3H11A_ES-E14_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RBBP5	ENCODE Transcription Factor Targets	1.0	null
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46144
lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063832
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18928
WSU-FSCCL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2975
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.362646
suppressor	GeneRIF Biological Term Annotations	1.0	null
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.217762
TMD8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55748
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4143
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.472604
lymphoblastic leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.223662
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25796
sensitivity	GeneRIF Biological Term Annotations	1.0	null
involving	GeneRIF Biological Term Annotations	1.0	null
lymphocytic leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.113755
CTCF_MEL cell line_mm9_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1568	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28858
DU145	CCLE Cell Line Gene CNV Profiles	1.0	1.69847
H2AFZ_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir187	GeneRIF Biological Term Annotations	1.0	null
CTCF_heart_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
phenotype	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_CH12.LX_mm9_4	ENCODE Histone Modification Site Profiles	1.0	null
TOLEDO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.835009
nasal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.657054
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055751
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054456
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.51611
OV56	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.853438
SNU-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.920813
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16819
BT-20	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28906
allergic asthma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.269398
lung adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.197099
female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045607
E2A	MotifMap Predicted Transcription Factor Targets	1.0	null
SK-MM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66322
tnfalpha	GeneRIF Biological Term Annotations	1.0	null
lymphoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.100212
directly	GeneRIF Biological Term Annotations	1.0	null
SNU410	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44974
MC116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29625
AGS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03003
mg-63 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.442578
H3K4me2_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05756
LS123	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61947
although	GeneRIF Biological Term Annotations	1.0	null
t-lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.428018
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.54244
modulating	GeneRIF Biological Term Annotations	1.0	null
NCI-H1915	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.853259
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.941936
H3K4me1_cerebellum_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
KYSE270	CCLE Cell Line Gene CNV Profiles	1.0	1.99202
GR	MotifMap Predicted Transcription Factor Targets	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.327896
internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06381
KLM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30489
peripheral t-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.320454
t-lymphoblastic leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.257572
HS729	CCLE Cell Line Gene CNV Profiles	1.0	1.46814
OVMANA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.85302
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05866
ovarian cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.471089
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.18931
POLR2AphosphoS5_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SU.86.86	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.72883
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.853259
sense organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067004
BICR22	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041335