association	dataset	threshold value	standardized value
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.214954
NCI-H727	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.80332
antral mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.212586
cystic kidney	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.248905
ductal	GeneRIF Biological Term Annotations	1.0	null
inhibition	GeneRIF Biological Term Annotations	1.0	null
gastric cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.334865
metabolism	GeneRIF Biological Term Annotations	1.0	null
apoptosis	GeneRIF Biological Term Annotations	1.0	null
autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050249
VPRBP_KD_GDS4829_90_human_DU145 prostate cancer cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
thalamic nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.110334
H3K4me1_erythroblast_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
suggesting	GeneRIF Biological Term Annotations	1.0	null
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826606
crohn's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.240497
recent	GeneRIF Biological Term Annotations	1.0	null
lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.250663
histologic	GeneRIF Biological Term Annotations	1.0	null
BACH1	ENCODE Transcription Factor Targets	1.0	null
adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.390799
observations	GeneRIF Biological Term Annotations	1.0	null
homeostasis/metabolism phenotype	MPO Gene-Phenotype Associations	1.0	null
colorectal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.581618
mir194	GeneRIF Biological Term Annotations	1.0	null
ES-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0241
H3K4me1_G1E-ER4_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
PPARG-20887899-3T3-L1 PREADIPOCYTE CELLS-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
POLR2A_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
esophageal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.1199
H3K4me3_erythroblast_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
demonstrate	GeneRIF Biological Term Annotations	1.0	null
abnormal urine homeostasis	MPO Gene-Phenotype Associations	1.0	null
H3K4me2_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07711
H3K4me3_Penis Foreskin Keratinocyte Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051505
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.249664
bone cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.15339
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.829872
rectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.171619
infection	GeneRIF Biological Term Annotations	1.0	null
colonic epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.60893
complete	GeneRIF Biological Term Annotations	1.0	null
non-small cell lung adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.450271
CTCF_WI38_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
colonic epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.233446
small intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.221755
nuclear part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.053095
liver cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075467
systemic	GeneRIF Biological Term Annotations	1.0	null
p300	GeneRIF Biological Term Annotations	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.01462
idea	GeneRIF Biological Term Annotations	1.0	null
SW 620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06409
COLO680N	CCLE Cell Line Gene CNV Profiles	1.0	2.54795
duodenal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.61175
renal parenchyma	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.340757
HOP-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.80332
COLO678	CCLE Cell Line Gene CNV Profiles	1.0	1.3978
acquired metabolic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045698
H3K27me3_megakaryocyte_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.251015
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13866
hsa-miR-335-5p	MiRTarBase microRNA Targets	1.0	null
EBC1	CCLE Cell Line Gene CNV Profiles	1.0	1.43597
tissues	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
micrornas	GeneRIF Biological Term Annotations	1.0	null
POLR2A_small intestine_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
differentially	GeneRIF Biological Term Annotations	1.0	null
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00655
downregulated	GeneRIF Biological Term Annotations	1.0	null
p300mediated	GeneRIF Biological Term Annotations	1.0	null
HDAC1	ENCODE Transcription Factor Targets	1.0	null
nucleoplasm part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.158129
MAZ_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.929764
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060616
primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.04428
effects	GeneRIF Biological Term Annotations	1.0	null
proteinuria	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.692697
candidate	GeneRIF Biological Term Annotations	1.0	null
epithelial	GeneRIF Biological Term Annotations	1.0	null
mir17	GeneRIF Biological Term Annotations	1.0	null
chondrosarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.489057
renal artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.340539
RAD21_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
migrationpromoting	GeneRIF Biological Term Annotations	1.0	null
pancreatic	GeneRIF Biological Term Annotations	1.0	null
erythematosus	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
polyps	GeneRIF Biological Term Annotations	1.0	null
mediating	GeneRIF Biological Term Annotations	1.0	null
KDM5B	ENCODE Transcription Factor Targets	1.0	null
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46673
toxic shock syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.243995
implicated	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_G1E-ER4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_testis_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
laryngeal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.644479
POLR2A_bone marrow macrophage_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
epithelial ovarian cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.360782
HSC3	CCLE Cell Line Gene CNV Profiles	1.0	1.67829
MAFF_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
promoter	GeneRIF Biological Term Annotations	1.0	null
commensal bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.092281
H3K27me3_erythroblast_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_kidney_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
RCOR1_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
primary	GeneRIF Biological Term Annotations	1.0	null
pancreatic ductal adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.311014
POLR2A_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HNF4A	ENCODE Transcription Factor Targets	1.0	null
REST	ENCODE Transcription Factor Targets	1.0	null
ML1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52378
abnormal kidney morphology	MGI Mouse Phenotype Associations 2023	1.0	null
TCF12_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
secondary hypertension	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.128351
panc-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.466111
MAX_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
support	GeneRIF Biological Term Annotations	1.0	null
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.287447
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20256
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052343
necessary	GeneRIF Biological Term Annotations	1.0	null
heart	GeneRIF Biological Term Annotations	1.0	null
regulatory	GeneRIF Biological Term Annotations	1.0	null
histone	GeneRIF Biological Term Annotations	1.0	null
OVCAR8	CCLE Cell Line Gene CNV Profiles	1.0	1.39712
MYOG	ENCODE Transcription Factor Targets	1.0	null
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39293
HS 69ST	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.847715
HCC1395	CCLE Cell Line Gene CNV Profiles	1.0	1.48503
endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.067299
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.908611
H3K4me3_Duodenum Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
blood	GeneRIF Biological Term Annotations	1.0	null
colon	GeneRIF Biological Term Annotations	1.0	null
based	GeneRIF Biological Term Annotations	1.0	null
mir429	GeneRIF Biological Term Annotations	1.0	null
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.514186
alteration	GeneRIF Biological Term Annotations	1.0	null
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054759
cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044727
SCABER	CCLE Cell Line Gene CNV Profiles	1.0	1.88073
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.43968
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.939119
tubular	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_megakaryocyte_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_HepG2_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
colorectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.767783
MELHO	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48716
H3K27me3_megakaryocyte_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
breast	GeneRIF Biological Term Annotations	1.0	null
akt	GeneRIF Biological Term Annotations	1.0	null
NCI-H460	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.909343
celiac disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.191408
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.669657
dicer1	GeneRIF Biological Term Annotations	1.0	null
liver carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.30848
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.01549
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.825322
intratumoral	GeneRIF Biological Term Annotations	1.0	null
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.397471
connective tissue cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048121
rectal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.581218
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.393936
BHLHE40_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pancreatic cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.247399
non-small cell lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.261952
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
invasion	GeneRIF Biological Term Annotations	1.0	null
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073444
colonic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.165723
esophageal	GeneRIF Biological Term Annotations	1.0	null
decreased	GeneRIF Biological Term Annotations	1.0	null
nuclear	GeneRIF Biological Term Annotations	1.0	null
estimated	GeneRIF Biological Term Annotations	1.0	null
larynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.149446
H3K27me3_G1E_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
opening	GeneRIF Biological Term Annotations	1.0	null
H3K79me2_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.908611
binded	GeneRIF Biological Term Annotations	1.0	null
CAMA-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.06407
BT-474	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
abnormal mesangial matrix morphology	MPO Gene-Phenotype Associations	1.0	null
kidney cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.321545
CTCF_thymus_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
prediabetes syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.163111
H3K4me3_epithelial cell of proximal tubule_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_bone marrow macrophage_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826606
POLR2A_HeLa-S3_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal physiological response to xenobiotic	MPO Gene-Phenotype Associations	1.0	null
exosomes	GeneRIF Biological Term Annotations	1.0	null
control	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
ZC3H11A	ENCODE Transcription Factor Targets	1.0	null
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.08722
nephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.59952
adult	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.325701
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.791721
CHD2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
histopathologic	GeneRIF Biological Term Annotations	1.0	null
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.61941
adjacent	GeneRIF Biological Term Annotations	1.0	null
reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045949
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20256
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.977936
H3K4me3_erythroblast_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
abnormal homeostasis	MPO Gene-Phenotype Associations	1.0	null
pancreatic carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.124825
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826606
CTCF	ENCODE Transcription Factor Targets	1.0	null
pancreatic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.158434
using	GeneRIF Biological Term Annotations	1.0	null
hepatocellular carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.310652
bgc-823 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.451428
bone cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.151373
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13768
H3K4me1_Fetal Brain	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Lung Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
bim	GeneRIF Biological Term Annotations	1.0	null
abomasum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.092875
abnormal renal glomerulus morphology	MGI Mouse Phenotype Associations 2023	1.0	null
SU.86.86	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.993799
large intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.750818
HNF4G_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SKMEL28	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68752
H3K4me1_megakaryocyte_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
neuroblastoma	GeneRIF Biological Term Annotations	1.0	null
SMC3	ENCODE Transcription Factor Targets	1.0	null
allergen	GeneRIF Biological Term Annotations	1.0	null
a-2780 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.811891
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.169859
controls	GeneRIF Biological Term Annotations	1.0	null
transcription	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_iPS DF 19.11	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K4me3_liver_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
myelomas	GeneRIF Biological Term Annotations	1.0	null
mir145	GeneRIF Biological Term Annotations	1.0	null
iga glomerulonephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.508808
regulating	GeneRIF Biological Term Annotations	1.0	null
NCIH441	CCLE Cell Line Gene CNV Profiles	1.0	1.64326
pancreatic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.240216
TCF12	ENCODE Transcription Factor Targets	1.0	null
H3K4me1_cortical plate_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
hepatoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075945
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.976744
CHD2	ENCODE Transcription Factor Targets	1.0	null
RAD21_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046007
POLR2AphosphoS2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.59327
ZNF384	ENCODE Transcription Factor Targets	1.0	null
intestinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.576939
hepatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.292793
POLR2AphosphoS5_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCOR1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pancreatic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.25457
gastric cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.092304
disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040659
extracellular region part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.050679
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.227988
autoimmune disease of gastrointestinal tract	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.136875
SNU-668	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03258
multimodal	GeneRIF Biological Term Annotations	1.0	null
prevented	GeneRIF Biological Term Annotations	1.0	null
C170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.93944
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.935799
POLR2AphosphoS5_G1E_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
STAT1_01_21	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	0.815
upregulation	GeneRIF Biological Term Annotations	1.0	null
fibrosis	GeneRIF Biological Term Annotations	1.0	null
intestinal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.467273
H3K27ac_ES-E14_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
POLR2A_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K18ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
MAX	ENCODE Transcription Factor Targets	1.0	null
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.79931
part	GeneRIF Biological Term Annotations	1.0	null
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45004
NFYB_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CEBPB_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
esophageal squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.341863
Breast Neoplasms	CTD Gene-Disease Associations	1.0	1.01099
altered	GeneRIF Biological Term Annotations	1.0	null
BICR31	CCLE Cell Line Gene CNV Profiles	1.0	1.32748
FOXA2	ENCODE Transcription Factor Targets	1.0	null
ercc3	GeneRIF Biological Term Annotations	1.0	null
A498	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53512
nephrosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.388166
HDAC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SJSA1	CCLE Cell Line Gene CNV Profiles	1.0	1.82118
regulated	GeneRIF Biological Term Annotations	1.0	null
ner	GeneRIF Biological Term Annotations	1.0	null
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	2.88009
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62685
bronchogenic carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.290652
intestinal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.624254
subset	GeneRIF Biological Term Annotations	1.0	null
clinical	GeneRIF Biological Term Annotations	1.0	null
MYC	ENCODE Transcription Factor Targets	1.0	null
NCIH2073	CCLE Cell Line Gene CNV Profiles	-1.0	-2.22099
colorectal	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
POLR2A_HepG2_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042089
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.17141
POLR2A_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
colonic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.635572
SAP30	ENCODE Transcription Factor Targets	1.0	null
ovary	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079913
Fatty Liver	CTD Gene-Disease Associations	1.0	1.14302
19924232-TableS3	GeneSigDB Published Gene Signatures	1.0	null
squamous	GeneRIF Biological Term Annotations	1.0	null
HNF4A_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
urinary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.348614
RBPJ-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
ovarian cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.254183
lung adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.214636
20068076-SuppTable4	GeneSigDB Published Gene Signatures	1.0	null
abnormal renal/urinary system physiology	MPO Gene-Phenotype Associations	1.0	null
coordinated	GeneRIF Biological Term Annotations	1.0	null
lung cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.43989
volunteers	GeneRIF Biological Term Annotations	1.0	null
mir192	GeneRIF Biological Term Annotations	1.0	null
ZNF143	ENCODE Transcription Factor Targets	1.0	null
small intestine	GTEx Tissue Gene Expression Profiles	1.0	1.39827
NFYB	ENCODE Transcription Factor Targets	1.0	null
posttranscriptional	GeneRIF Biological Term Annotations	1.0	null
NCI-H810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.909343
noncancerous	GeneRIF Biological Term Annotations	1.0	null
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.340019
mechanisms	GeneRIF Biological Term Annotations	1.0	null
cervix uteri	GTEx Tissue Gene Expression Profiles	-1.0	-1.01385
CTCF_MEL cell line_mm9_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Kidney Diseases	CTD Gene-Disease Associations	1.0	2.88009
associates	GeneRIF Biological Term Annotations	1.0	null
compared	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_ES-Bruce4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
RFX5	ENCODE Transcription Factor Targets	1.0	null
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
healthy	GeneRIF Biological Term Annotations	1.0	null
mir99a	GeneRIF Biological Term Annotations	1.0	null
COLO-818	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09335
H3K27ac_Panc1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
synthase	GeneRIF Biological Term Annotations	1.0	null
SAP30_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lupus	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_Adult Kidney	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
mesangial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.444499
level	GeneRIF Biological Term Annotations	1.0	null
acid	GeneRIF Biological Term Annotations	1.0	null
arrest	GeneRIF Biological Term Annotations	1.0	null
15284443-Table5	GeneSigDB Published Gene Signatures	1.0	null
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.79931
H3K4me3_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
FOXA2_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal kidney morphology	MPO Gene-Phenotype Associations	1.0	null
H3K4me3_Colonic Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
YD38	CCLE Cell Line Gene CNV Profiles	1.0	1.39987
SMC3_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16678
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67664
mirna	GeneRIF Biological Term Annotations	1.0	null
CTCF_testis_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
glomerulosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.840525
colonic cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.635976
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053301
ELF1-20517297-JURKAT-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
H3K9ac_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
gastric cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.096301
H3K4me3_Rectal Smooth Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.175188
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046979
RCOR1	ENCODE Transcription Factor Targets	1.0	null
combined	GeneRIF Biological Term Annotations	1.0	null
FADU	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46912
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10993
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.171673
ZNF143_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
p53	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_megakaryocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_Caco-2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
L1236	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32531
KMS-28BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25605
hbv	GeneRIF Biological Term Annotations	1.0	null
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056145
BCL3	ENCODE Transcription Factor Targets	1.0	null
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08143
NCI-H1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09335
a-549 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.451428
vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047794
KDM5B_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
non-small cell lung cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.540981
H3K4me3_Caco-2_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.061399
H3K27me3_G1E-ER4_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
higher	GeneRIF Biological Term Annotations	1.0	null
ectopic	GeneRIF Biological Term Annotations	1.0	null
autosomal dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.229024
SF539	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3546
stem	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_placenta_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
BT-483	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.84873
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20256
ZNF384_ES-E14_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
detection	GeneRIF Biological Term Annotations	1.0	null
nuclear dna-directed rna polymerase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.730628
lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.223165
mir320a	GeneRIF Biological Term Annotations	1.0	null
colorectal adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.487886
indicated	GeneRIF Biological Term Annotations	1.0	null
COLO 857	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.977936
jj012 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.52808
glomerulonephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.582773
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.7105
colorectal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.460506
renal glomerulus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.51453
samples	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25532
PANC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67664
YMB1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81925
miR-targeted genes in lymphocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
H3K36me3_small intestine_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
trigger	GeneRIF Biological Term Annotations	1.0	null
BT-474	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.827208
stomach	GTEx Tissue Gene Expression Profiles	1.0	0.824568
transferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.071922
mdm2	GeneRIF Biological Term Annotations	1.0	null
HCC2270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67907
CAMA1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.88589
proliferation	GeneRIF Biological Term Annotations	1.0	null
H3K4me2_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
widr cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.426109
listeriosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.283655
abnormal renal corpuscle morphology	MPO Gene-Phenotype Associations	1.0	null
immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042259
than	GeneRIF Biological Term Annotations	1.0	null
POLR2A_kidney_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SPI1-20517297-HL60-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
rcc	GeneRIF Biological Term Annotations	1.0	null
cycle	GeneRIF Biological Term Annotations	1.0	null
BT474	CCLE Cell Line Gene CNV Profiles	1.0	2.0607
RCOR3	ChEA Transcription Factor Targets	1.0	null
sw-1116 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.599675
adenocarcinoma	GeneRIF Biological Term Annotations	1.0	null
mammalian phenotype	MPO Gene-Phenotype Associations	1.0	null
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.334865
test	GeneRIF Biological Term Annotations	1.0	null
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.950393
POLR2A_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9ac_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
rna polymerase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.622229
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.823175
H3K4me1_erythroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
esophageal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.251606
POLR2A_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pancreas adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.195501
diagnosed	GeneRIF Biological Term Annotations	1.0	null
YY1-22570637-MALME-3M-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
H3K9ac_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
exosome (rnase complex)	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.837351
esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.149926
non-small cell lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.345558
ZNF354C	JASPAR Predicted Transcription Factor Targets	1.0	null
H3K4me1_iPS DF 6.9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K4me1_G1E_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
lynch syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.494648
NCI-H441	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67907
Learning Disorders	CTD Gene-Disease Associations	1.0	1.17629
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.825322
KMS20	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68077
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20256
MDAMB175VII	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71386
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.959449
H3K9ac_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
abnormal nephron morphology	MPO Gene-Phenotype Associations	1.0	null
POLR2A_cortical plate_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
19503096-Figure1ab	GeneSigDB Published Gene Signatures	1.0	null
colon cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.405305
epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.483596
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83468
H3K14ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062702
bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048254
stomach	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.093722
H3K4me3_HepG2_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
IGR1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59576
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.01375
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826606
POLR2A_liver_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
extracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.137192
effect	GeneRIF Biological Term Annotations	1.0	null
suggested	GeneRIF Biological Term Annotations	1.0	null
abnormal glomerular mesangium morphology	MPO Gene-Phenotype Associations	1.0	null
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34729
duodenum cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.761047
another	GeneRIF Biological Term Annotations	1.0	null
hbx	GeneRIF Biological Term Annotations	1.0	null
BHLHE40	ENCODE Transcription Factor Targets	1.0	null
rate	GeneRIF Biological Term Annotations	1.0	null
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25532
tgfbeta	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_kidney_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44121
monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048777
H2AFZ_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
acetyltransferases	GeneRIF Biological Term Annotations	1.0	null
abnormal urine protein level	MGI Mouse Phenotype Associations 2023	1.0	null
adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.453716
BCL3_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H2122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.908326
medial geniculate nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.392686
CTCF_G1E-ER4_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.820666
GATA6_01_247	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.63478
diabetic	GeneRIF Biological Term Annotations	1.0	null
large intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.460129
activated	GeneRIF Biological Term Annotations	1.0	null
Non-alcoholic Fatty Liver Disease	CTD Gene-Disease Associations	1.0	1.03678
peripheral	GeneRIF Biological Term Annotations	1.0	null
prolonged	GeneRIF Biological Term Annotations	1.0	null
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
RBBP5	ENCODE Transcription Factor Targets	1.0	null
renal/urinary system phenotype	MPO Gene-Phenotype Associations	1.0	null
player	GeneRIF Biological Term Annotations	1.0	null
membrane-bounded vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.062651
stage	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_G1E_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
downregulation	GeneRIF Biological Term Annotations	1.0	null
core	GeneRIF Biological Term Annotations	1.0	null
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057104
suppressor	GeneRIF Biological Term Annotations	1.0	null
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.249664
decreased physiological sensitivity to xenobiotic	MGI Mouse Phenotype Associations 2023	1.0	null
H3K36me3_Caco-2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_Skeletal Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K18ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.814815
H2AFZ_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
therapeutic	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Carcinoma, Non-Small-Cell Lung	HuGE Navigator Gene-Phenotype Associations	1.0	null
regulators	GeneRIF Biological Term Annotations	1.0	null
ovary cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.085784
RERFLCAD2	CCLE Cell Line Gene CNV Profiles	1.0	2.24553
H3K27me3_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
esophageal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.564112
GTF2F1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_embryonic fibroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
abnormal urine protein level	MPO Gene-Phenotype Associations	1.0	null
HDAC6_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
liver	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.627889
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.977936
liver cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069066
SPI1	ChEA Transcription Factor Targets	1.0	null
abilities	GeneRIF Biological Term Annotations	1.0	null
JHH-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19252
after	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_kidney_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
chromatin	GeneRIF Biological Term Annotations	1.0	null
H3K79me1_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
identify	GeneRIF Biological Term Annotations	1.0	null
MAFF	ENCODE Transcription Factor Targets	1.0	null
dissociation	GeneRIF Biological Term Annotations	1.0	null
PL-21	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.951737
overexpression	GeneRIF Biological Term Annotations	1.0	null
SNU-638	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30035
focal segmental glomerulosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.840525
challenge	GeneRIF Biological Term Annotations	1.0	null
ZNF384_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_A549_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.521888
CTCF_MEL cell line_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
18308931-Table3	GeneSigDB Published Gene Signatures	1.0	null
respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.22937
H3K4me3_A549_hg19_4	ENCODE Histone Modification Site Profiles	1.0	null
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826606
salivary gland	GTEx Tissue Gene Expression Profiles	-1.0	-1.01385
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.818994
ES2	CCLE Cell Line Gene CNV Profiles	1.0	1.46171
related	GeneRIF Biological Term Annotations	1.0	null
COV362	CCLE Cell Line Gene CNV Profiles	1.0	1.86127
H3K27ac_liver_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
g2m	GeneRIF Biological Term Annotations	1.0	null
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25624
POLR2A_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH650	CCLE Cell Line Gene CNV Profiles	1.0	1.3407
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10993
ercc4	GeneRIF Biological Term Annotations	1.0	null
migration	GeneRIF Biological Term Annotations	1.0	null
hct-15 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.443731
duodenum adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.19921
nephrotic syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.417644
blastema	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.352969
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44921
change	GeneRIF Biological Term Annotations	1.0	null
mir215	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_liver_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
H2AFZ_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cellular	GeneRIF Biological Term Annotations	1.0	null
ELF5	JASPAR Predicted Transcription Factor Targets	1.0	null
TP63	ChEA Transcription Factor Targets	1.0	null
caco-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.227186
showing	GeneRIF Biological Term Annotations	1.0	null
MYOG_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
bone cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.088016
Necrosis	CTD Gene-Disease Associations	1.0	2.88009
lines	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
dna-directed rna polymerase ii, holoenzyme	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.730628
head kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.250627
POLR2A_A549_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
duodenum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.18588
musculoskeletal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046761
POLR2AphosphoS2_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO 853	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.894498
CTCF_G1E-ER4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EP300	ENCODE Transcription Factor Targets	1.0	null
malignant pleural mesothelioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.190786
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05339
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057346
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.908611
POLR2AphosphoS5_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
circulating	GeneRIF Biological Term Annotations	1.0	null
H4K8ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.094836
SNU761	CCLE Cell Line Gene CNV Profiles	-1.0	-2.62741
detected	GeneRIF Biological Term Annotations	1.0	null
liver cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.28831
Disease Models, Animal	CTD Gene-Disease Associations	1.0	1.10175
H2AFZ_B cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
diencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080598
artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053809
carbohydrate metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.072941
EP300_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051805
carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.539396
multiple	GeneRIF Biological Term Annotations	1.0	null
MOR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.909343
CTCF_A549_hg19_9	ENCODE Transcription Factor Binding Site Profiles	1.0	null
sustained	GeneRIF Biological Term Annotations	1.0	null
mir34a	GeneRIF Biological Term Annotations	1.0	null
NCI-H2023	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.908326
CAL-39	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
hypertension	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.075818
ELF1	ChEA Transcription Factor Targets	1.0	null
forebrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057602
thalamus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.108296
gastric antrum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.179408
suppressed	GeneRIF Biological Term Annotations	1.0	null
COLO 678	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.957547
negatively	GeneRIF Biological Term Annotations	1.0	null
HS 936.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.57338
thymidylate	GeneRIF Biological Term Annotations	1.0	null
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.249664
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44121
OV7	CCLE Cell Line Gene CNV Profiles	-1.0	-2.1383
key	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_erythroblast_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.928478
suppressors	GeneRIF Biological Term Annotations	1.0	null
enterocyte	GeneRIF Biological Term Annotations	1.0	null
nephron	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.796041
aristolochic	GeneRIF Biological Term Annotations	1.0	null
particularly	GeneRIF Biological Term Annotations	1.0	null
VMRCLCP	CCLE Cell Line Gene CNV Profiles	1.0	1.71071
early	GeneRIF Biological Term Annotations	1.0	null
dna-directed rna polymerase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.642286
H3K4me3_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
pretherapeutic	GeneRIF Biological Term Annotations	1.0	null
CAL 27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.953483
diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.09665
resulting	GeneRIF Biological Term Annotations	1.0	null
acetylation	GeneRIF Biological Term Annotations	1.0	null
vivo	GeneRIF Biological Term Annotations	1.0	null
nsclc	GeneRIF Biological Term Annotations	1.0	null
G112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13866
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41719
abnormal renal/urinary system morphology	MPO Gene-Phenotype Associations	1.0	null
colorectal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.169347
YAPC	CCLE Cell Line Gene CNV Profiles	1.0	1.50842
factors	GeneRIF Biological Term Annotations	1.0	null
Inflammation	CTD Gene-Disease Associations	1.0	1.62013
genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047215
H3K4me3_epithelial cell of proximal tubule_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
hypersensitivity reaction disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.05073
either	GeneRIF Biological Term Annotations	1.0	null
CTCF_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1882	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.909343
H3K4me1_olfactory bulb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
KYSE180	CCLE Cell Line Gene CNV Profiles	1.0	1.5606
H3K27ac_bone marrow_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
serum	GeneRIF Biological Term Annotations	1.0	null
hypersensitivity reaction type ii disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.161139
ZR751	CCLE Cell Line Gene CNV Profiles	-1.0	-1.66645
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826606
PPARG	ChEA Transcription Factor Targets	1.0	null
RAD21	ENCODE Transcription Factor Targets	1.0	null
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39675
H3K4me1_ES-E14_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_MEL cell line_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
H3K27me3_erythroblast_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDA-MB-134-VI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01381
HDAC2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9ac_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
intestinal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.302838
HS936T	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42527
TE5	CCLE Cell Line Gene CNV Profiles	1.0	1.86174
filtration	GeneRIF Biological Term Annotations	1.0	null
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.79931
CEBPB	ENCODE Transcription Factor Targets	1.0	null
H3K36me3_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU283	CCLE Cell Line Gene CNV Profiles	-1.0	-1.88174
decreased physiological sensitivity to xenobiotic	MPO Gene-Phenotype Associations	1.0	null
renal corpuscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.577615
H3K4me3_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_G1E_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
contributes	GeneRIF Biological Term Annotations	1.0	null
small intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.693098
GTF2F1	ENCODE Transcription Factor Targets	1.0	null
H3K9ac_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ZC3H11A_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
extracellular vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.83781
SK-MEL-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.55005
glucose metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.075579
failure	GeneRIF Biological Term Annotations	1.0	null
colorectal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.58242
RBPJ	ChEA Transcription Factor Targets	1.0	null
repression	GeneRIF Biological Term Annotations	1.0	null
mir30c	GeneRIF Biological Term Annotations	1.0	null
NCOR1	ENCODE Transcription Factor Targets	1.0	null
MDAMB134VI	CCLE Cell Line Gene CNV Profiles	-1.0	-2.23749
hepatocyte	GeneRIF Biological Term Annotations	1.0	null
H3K79me2_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
inhalation	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_lung_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
esophageal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.323509
POLR2AphosphoS2_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
newly	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_Caco-2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ovary cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.108976
NCIH1437	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40899
asthma	GeneRIF Biological Term Annotations	1.0	null
modulate	GeneRIF Biological Term Annotations	1.0	null
profile	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
pleural cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.188632
intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.180652
including	GeneRIF Biological Term Annotations	1.0	null
nephropathy	GeneRIF Biological Term Annotations	1.0	null
network	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
reducing	GeneRIF Biological Term Annotations	1.0	null
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060579
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80021
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.528323
Liver Neoplasms	CTD Gene-Disease Associations	1.0	1.48376
H3K4me1_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
glomerular	GeneRIF Biological Term Annotations	1.0	null
KYSE-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.85517
mirnas	GeneRIF Biological Term Annotations	1.0	null
lipid	GeneRIF Biological Term Annotations	1.0	null
mir100	GeneRIF Biological Term Annotations	1.0	null
ovary cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.249653
medial geniculate body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.291365
MALME3M	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61768
mir125b	GeneRIF Biological Term Annotations	1.0	null
overexpressed	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_G1E-ER4_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.861818
nephrosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.352659
rectal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.581218
A-427	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.908611
adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.668029
CTCF_MEL cell line_mm9_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
vitro	GeneRIF Biological Term Annotations	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
H3K4me1_spleen_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
EBNA2-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
JHH5	CCLE Cell Line Gene CNV Profiles	1.0	1.55219
HNF4A_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hepg2	GeneRIF Biological Term Annotations	1.0	null
ulcerative colitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.28294
urinary	GeneRIF Biological Term Annotations	1.0	null
SCC4	CCLE Cell Line Gene CNV Profiles	1.0	1.47218
U-937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971717
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.681471
MYC_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
exert	GeneRIF Biological Term Annotations	1.0	null
G130	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19761
YY1	ChEA Transcription Factor Targets	1.0	null
persistent	GeneRIF Biological Term Annotations	1.0	null
neck	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066929
NCI-H716	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13866
H3K4me3_erythroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
impairment	GeneRIF Biological Term Annotations	1.0	null
RFX5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
19807731-Figure1	GeneSigDB Published Gene Signatures	1.0	null
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062351
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.2398
H3K4me3_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
significant	GeneRIF Biological Term Annotations	1.0	null
MEL-HO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62685
hepatoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.329361
lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.365633
BACH1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
toxic	GeneRIF Biological Term Annotations	1.0	null
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.439123
MAZ	ENCODE Transcription Factor Targets	1.0	null
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39675
HDAC6	ENCODE Transcription Factor Targets	1.0	null
treatment	GeneRIF Biological Term Annotations	1.0	null
mesangium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.512957
CTCF_CH12.LX_mm9_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CORL95	CCLE Cell Line Gene CNV Profiles	-1.0	-2.89749
H3K79me2_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
REST_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lower	GeneRIF Biological Term Annotations	1.0	null
NCI-H650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07223
TP63-22573176-HFKS-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
renal tubule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.43989
H3K27ac_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
colitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.28294
CGTHW1	CCLE Cell Line Gene CNV Profiles	1.0	1.36293
gastric	GeneRIF Biological Term Annotations	1.0	null
dominantnegative	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.294223
H3K27ac_B cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_erythroblast_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
inhibit	GeneRIF Biological Term Annotations	1.0	null
vas efferens	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.404418
adrenal gland	GTEx Tissue Gene Expression Profiles	-1.0	-1.01385
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.995211
pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.09837
kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.678302
H3K4me3_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
gastrointestinal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.155933
injury	GeneRIF Biological Term Annotations	1.0	null
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
HDAC2	ENCODE Transcription Factor Targets	1.0	null
throat	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071661
PA-TU-8988T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10993
POLR2AphosphoS2_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
inflammatory bowel disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.249608
HCC44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10669
gastric mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.100259
coordinately	GeneRIF Biological Term Annotations	1.0	null
FOXA2_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PECAPJ34CLONEC12	CCLE Cell Line Gene CNV Profiles	1.0	2.32002
CAL27	CCLE Cell Line Gene CNV Profiles	1.0	1.94832
kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.96809
GATA1	ChEA Transcription Factor Targets	1.0	null
HDAC2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2BK20ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
lung adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.278251
underexpressed	GeneRIF Biological Term Annotations	1.0	null
NCIH838	CCLE Cell Line Gene CNV Profiles	1.0	1.40658
SKMEL2	CCLE Cell Line Gene CNV Profiles	-1.0	-2.0082
GATA1-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
proximal	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_erythroblast_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.048093
transcriptionally	GeneRIF Biological Term Annotations	1.0	null
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.22852
H3K27ac_Brain Cingulate Gyrus	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.18179
ets1	GeneRIF Biological Term Annotations	1.0	null
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.711319
esophageal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.341126
pituitary	GTEx Tissue Gene Expression Profiles	-1.0	-1.01385
antropyloric mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.1679
mir192215	GeneRIF Biological Term Annotations	1.0	null
abnormal kidney cortex morphology	MPO Gene-Phenotype Associations	1.0	null
cancers	GeneRIF Biological Term Annotations	1.0	null
lung	GeneRIF Biological Term Annotations	1.0	null
colon	GTEx Tissue Gene Expression Profiles	1.0	1.40705
microrna192	GeneRIF Biological Term Annotations	1.0	null
RCOR3-21632747-MESC-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.674713
internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058318
adenomatous	GeneRIF Biological Term Annotations	1.0	null
SOX2_Deficiency_GDS4853_321_human_AZ-521 gastric cancer (GC) cell line - 18 Hours	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11134
then	GeneRIF Biological Term Annotations	1.0	null
abnormal mesangial matrix morphology	MGI Mouse Phenotype Associations 2023	1.0	null
hep-g2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.257237
ZNF384_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal renal glomerulus morphology	MPO Gene-Phenotype Associations	1.0	null
NCI-H82	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03355
extracellular vesicular exosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.83781
distinguishes	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_Duodenum Smooth Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
renal proximal tubule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.474258
H3K4ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
integrator complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.85388
20448109-Table2	GeneSigDB Published Gene Signatures	1.0	null
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10993
loss	GeneRIF Biological Term Annotations	1.0	null
renal hypertension	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.141702
catalytic complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.060689
extracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.83781
colonic adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.370121
lung cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.375743
VCAP	CCLE Cell Line Gene CNV Profiles	1.0	3.17088
H3K4me1_megakaryocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
HNF4G	ENCODE Transcription Factor Targets	1.0	null
H3K36me3_Caco-2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
sip1	GeneRIF Biological Term Annotations	1.0	null
HCC1319	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13866
acetylated	GeneRIF Biological Term Annotations	1.0	null
CTCF_MEL cell line_mm9_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
showed	GeneRIF Biological Term Annotations	1.0	null
grade	GeneRIF Biological Term Annotations	1.0	null
renal cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.554876