association	dataset	threshold value	standardized value
vas efferens	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.404418
H3K36me3_erythroblast_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_Duodenum Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Learning Disorders	CTD Gene-Disease Associations	1.0	1.17629
acetylated	GeneRIF Biological Term Annotations	1.0	null
liver cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069066
bone cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.151373
SKMEL28	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68752
YAPC	CCLE Cell Line Gene CNV Profiles	1.0	1.50842
POLR2AphosphoS5_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
key	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
test	GeneRIF Biological Term Annotations	1.0	null
primary	GeneRIF Biological Term Annotations	1.0	null
duodenum cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.761047
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051505
HNF4A_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HS936T	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42527
SCABER	CCLE Cell Line Gene CNV Profiles	1.0	1.88073
renal hypertension	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.141702
H3K27me3_G1E_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
early	GeneRIF Biological Term Annotations	1.0	null
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046979
stomach	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.093722
detected	GeneRIF Biological Term Annotations	1.0	null
NCIH1437	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40899
small intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.693098
H3K36me3_Caco-2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.669657
mediating	GeneRIF Biological Term Annotations	1.0	null
NFYB	ENCODE Transcription Factor Targets	1.0	null
abilities	GeneRIF Biological Term Annotations	1.0	null
female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.251015
hbv	GeneRIF Biological Term Annotations	1.0	null
small intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.221755
hypersensitivity reaction disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.05073
gastric cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.334865
urinary	GeneRIF Biological Term Annotations	1.0	null
vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047794
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.829872
YMB1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81925
tissues	GeneRIF Biological Term Annotations	1.0	null
coordinately	GeneRIF Biological Term Annotations	1.0	null
YY1	ChEA Transcription Factor Targets	1.0	null
POLR2AphosphoS2_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
small intestine	GTEx Tissue Gene Expression Profiles	1.0	1.39827
sustained	GeneRIF Biological Term Annotations	1.0	null
lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.365633
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062702
hsa-miR-335-5p	MiRTarBase microRNA Targets	1.0	null
colonic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.165723
pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.09837
HSC3	CCLE Cell Line Gene CNV Profiles	1.0	1.67829
POLR2A_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO 853	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.894498
lines	GeneRIF Biological Term Annotations	1.0	null
exosomes	GeneRIF Biological Term Annotations	1.0	null
carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.539396
controls	GeneRIF Biological Term Annotations	1.0	null
renal cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.554876
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.823175
H3K4me1_Adult Kidney	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.950393
RERFLCAD2	CCLE Cell Line Gene CNV Profiles	1.0	2.24553
acid	GeneRIF Biological Term Annotations	1.0	null
factors	GeneRIF Biological Term Annotations	1.0	null
extracellular region part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.050679
transcription	GeneRIF Biological Term Annotations	1.0	null
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.820666
multiple	GeneRIF Biological Term Annotations	1.0	null
colitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.28294
H3K27me3_Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
colorectal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.581618
implicated	GeneRIF Biological Term Annotations	1.0	null
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41719
nuclear part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.053095
H3K9ac_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
SK-MEL-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.55005
H3K4me3_epithelial cell of proximal tubule_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
erythematosus	GeneRIF Biological Term Annotations	1.0	null
pancreas adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.195501
H3K4me3_A549_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.01375
SNU-638	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30035
H3K4me3_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_bone marrow macrophage_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826606
NCI-H2122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.908326
H3K4me1_liver_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
secondary hypertension	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.128351
dna-directed rna polymerase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.642286
RFX5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_small intestine_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.908611
large intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.460129
abnormal renal glomerulus morphology	MGI Mouse Phenotype Associations 2023	1.0	null
esophageal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.323509
toxic shock syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.243995
EP300	ENCODE Transcription Factor Targets	1.0	null
H3K79me2_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
exert	GeneRIF Biological Term Annotations	1.0	null
inhalation	GeneRIF Biological Term Annotations	1.0	null
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.908611
migration	GeneRIF Biological Term Annotations	1.0	null
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826606
HNF4A_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
indicated	GeneRIF Biological Term Annotations	1.0	null
H3K18ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
ZNF384	ENCODE Transcription Factor Targets	1.0	null
RCOR1_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RCOR1	ENCODE Transcription Factor Targets	1.0	null
transcriptionally	GeneRIF Biological Term Annotations	1.0	null
KYSE180	CCLE Cell Line Gene CNV Profiles	1.0	1.5606
OV7	CCLE Cell Line Gene CNV Profiles	-1.0	-2.1383
BT-474	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
HS 69ST	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.847715
suggesting	GeneRIF Biological Term Annotations	1.0	null
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83468
kidney cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.321545
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.18179
suppressed	GeneRIF Biological Term Annotations	1.0	null
myelomas	GeneRIF Biological Term Annotations	1.0	null
CTCF_testis_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K79me1_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CTCF_WI38_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZC3H11A	ENCODE Transcription Factor Targets	1.0	null
effect	GeneRIF Biological Term Annotations	1.0	null
glucose metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.075579
H3K4me1_erythroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
stage	GeneRIF Biological Term Annotations	1.0	null
ELF1	ChEA Transcription Factor Targets	1.0	null
REST_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
combined	GeneRIF Biological Term Annotations	1.0	null
Fatty Liver	CTD Gene-Disease Associations	1.0	1.14302
mir99a	GeneRIF Biological Term Annotations	1.0	null
MALME3M	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61768
profile	GeneRIF Biological Term Annotations	1.0	null
non-small cell lung adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.450271
RBPJ	ChEA Transcription Factor Targets	1.0	null
mir145	GeneRIF Biological Term Annotations	1.0	null
sw-1116 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.599675
transferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.071922
stomach	GTEx Tissue Gene Expression Profiles	1.0	0.824568
COLO680N	CCLE Cell Line Gene CNV Profiles	1.0	2.54795
H3K4me1_embryonic fibroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me2_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
HS 936.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.57338
diencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080598
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056145
RCOR3-21632747-MESC-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_kidney_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.977936
H3K4me3_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
dissociation	GeneRIF Biological Term Annotations	1.0	null
reducing	GeneRIF Biological Term Annotations	1.0	null
STAT1_01_21	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	0.815
A498	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53512
cycle	GeneRIF Biological Term Annotations	1.0	null
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10993
liver cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075467
G112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13866
COLO 857	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.977936
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44921
g2m	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
VCAP	CCLE Cell Line Gene CNV Profiles	1.0	3.17088
POLR2AphosphoS5_G1E_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
esophageal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.341126
GATA1	ChEA Transcription Factor Targets	1.0	null
carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.521888
vitro	GeneRIF Biological Term Annotations	1.0	null
lower	GeneRIF Biological Term Annotations	1.0	null
medial geniculate nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.392686
H3K36me3_Caco-2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
urinary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.348614
ner	GeneRIF Biological Term Annotations	1.0	null
circulating	GeneRIF Biological Term Annotations	1.0	null
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44121
KMS-28BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25605
POLR2A_testis_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.249664
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25532
autosomal dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.229024
ductal	GeneRIF Biological Term Annotations	1.0	null
mammalian phenotype	MPO Gene-Phenotype Associations	1.0	null
mesangium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.512957
lynch syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.494648
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.08722
H3K4me1_placenta_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
colonic adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.370121
resulting	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH838	CCLE Cell Line Gene CNV Profiles	1.0	1.40658
ectopic	GeneRIF Biological Term Annotations	1.0	null
ZNF384_ES-E14_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_ES-Bruce4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
cellular	GeneRIF Biological Term Annotations	1.0	null
VPRBP_KD_GDS4829_90_human_DU145 prostate cancer cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
asthma	GeneRIF Biological Term Annotations	1.0	null
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20256
HNF4G_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.249664
MYC	ENCODE Transcription Factor Targets	1.0	null
metabolism	GeneRIF Biological Term Annotations	1.0	null
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.094836
autoimmune disease of gastrointestinal tract	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.136875
suppressors	GeneRIF Biological Term Annotations	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.01462
decreased physiological sensitivity to xenobiotic	MPO Gene-Phenotype Associations	1.0	null
H3K4me3_erythroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
loss	GeneRIF Biological Term Annotations	1.0	null
acetyltransferases	GeneRIF Biological Term Annotations	1.0	null
pancreatic ductal adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.311014
H3K4me3_Caco-2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_MEL cell line_mm9_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
idea	GeneRIF Biological Term Annotations	1.0	null
another	GeneRIF Biological Term Annotations	1.0	null
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.287447
listeriosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.283655
adult	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.325701
hct-15 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.443731
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.976744
SMC3	ENCODE Transcription Factor Targets	1.0	null
SU.86.86	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.993799
abnormal physiological response to xenobiotic	MPO Gene-Phenotype Associations	1.0	null
Carcinoma, Non-Small-Cell Lung	HuGE Navigator Gene-Phenotype Associations	1.0	null
support	GeneRIF Biological Term Annotations	1.0	null
CHD2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
adenocarcinoma	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_ES-E14_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
MAFF_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_thymus_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
G130	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19761
akt	GeneRIF Biological Term Annotations	1.0	null
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34729
TP63	ChEA Transcription Factor Targets	1.0	null
A-427	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.908611
lung cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.43989
H3K27me3_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HDAC6	ENCODE Transcription Factor Targets	1.0	null
complete	GeneRIF Biological Term Annotations	1.0	null
overexpressed	GeneRIF Biological Term Annotations	1.0	null
glomerular	GeneRIF Biological Term Annotations	1.0	null
homeostasis/metabolism phenotype	MPO Gene-Phenotype Associations	1.0	null
MYOG	ENCODE Transcription Factor Targets	1.0	null
H3K79me2_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K9ac_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_MEL cell line_mm9_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZNF354C	JASPAR Predicted Transcription Factor Targets	1.0	null
kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.678302
SCC4	CCLE Cell Line Gene CNV Profiles	1.0	1.47218
renal artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.340539
colonic epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.233446
nephrosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.352659
NCI-H1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09335
H2AFZ_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
colorectal	GeneRIF Biological Term Annotations	1.0	null
mir215	GeneRIF Biological Term Annotations	1.0	null
colorectal adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.487886
after	GeneRIF Biological Term Annotations	1.0	null
mdm2	GeneRIF Biological Term Annotations	1.0	null
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057104
intratumoral	GeneRIF Biological Term Annotations	1.0	null
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.79931
abnormal homeostasis	MPO Gene-Phenotype Associations	1.0	null
MDAMB175VII	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71386
SMC3_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal kidney morphology	MPO Gene-Phenotype Associations	1.0	null
SAP30_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CAMA1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.88589
hepatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.292793
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10993
MDA-MB-134-VI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01381
rcc	GeneRIF Biological Term Annotations	1.0	null
CTCF_Caco-2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K14ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
VMRCLCP	CCLE Cell Line Gene CNV Profiles	1.0	1.71071
lupus	GeneRIF Biological Term Annotations	1.0	null
dominantnegative	GeneRIF Biological Term Annotations	1.0	null
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.43968
NCI-H650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07223
inhibit	GeneRIF Biological Term Annotations	1.0	null
a-549 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.451428
bgc-823 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.451428
KDM5B_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_G1E_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
FOXA2_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
aristolochic	GeneRIF Biological Term Annotations	1.0	null
suppressor	GeneRIF Biological Term Annotations	1.0	null
NCI-H441	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67907
extracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.83781
H3K4me3_erythroblast_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
FOXA2_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
impairment	GeneRIF Biological Term Annotations	1.0	null
allergen	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_olfactory bulb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
NCIH2073	CCLE Cell Line Gene CNV Profiles	-1.0	-2.22099
POLR2A_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KYSE-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.85517
H3K4me1_Skeletal Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Inflammation	CTD Gene-Disease Associations	1.0	1.62013
H3K4me1_megakaryocyte_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
a-2780 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.811891
multimodal	GeneRIF Biological Term Annotations	1.0	null
adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.668029
kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.96809
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042089
H3K4me1_G1E-ER4_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
liver carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.30848
H3K4me3_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
coordinated	GeneRIF Biological Term Annotations	1.0	null
cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044727
H3K4me3_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.22937
H3K4me1_erythroblast_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
demonstrate	GeneRIF Biological Term Annotations	1.0	null
serum	GeneRIF Biological Term Annotations	1.0	null
focal segmental glomerulosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.840525
TP63-22573176-HFKS-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.250663
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.928478
compared	GeneRIF Biological Term Annotations	1.0	null
ELF1-20517297-JURKAT-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
RAD21_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.223165
PA-TU-8988T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10993
RCOR3	ChEA Transcription Factor Targets	1.0	null
GTF2F1	ENCODE Transcription Factor Targets	1.0	null
esophageal	GeneRIF Biological Term Annotations	1.0	null
neuroblastoma	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_G1E_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.681471
colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.814815
hypersensitivity reaction type ii disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.161139
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062351
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.791721
BACH1	ENCODE Transcription Factor Targets	1.0	null
control	GeneRIF Biological Term Annotations	1.0	null
CHD2	ENCODE Transcription Factor Targets	1.0	null
adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.390799
internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058318
associates	GeneRIF Biological Term Annotations	1.0	null
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25624
GATA6_01_247	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.63478
H3K27ac_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
malignant pleural mesothelioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.190786
promoter	GeneRIF Biological Term Annotations	1.0	null
miR-targeted genes in lymphocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
hypertension	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.075818
TE5	CCLE Cell Line Gene CNV Profiles	1.0	1.86174
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.514186
pancreatic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.158434
persistent	GeneRIF Biological Term Annotations	1.0	null
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.929764
BICR31	CCLE Cell Line Gene CNV Profiles	1.0	1.32748
HDAC2	ENCODE Transcription Factor Targets	1.0	null
MYOG_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BHLHE40_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
activated	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_liver_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
intestinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.576939
FADU	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46912
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05339
ZR751	CCLE Cell Line Gene CNV Profiles	-1.0	-1.66645
urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.674713
proteinuria	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.692697
RAD21_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intestinal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.467273
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.01549
thalamus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.108296
abnormal nephron morphology	MPO Gene-Phenotype Associations	1.0	null
higher	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_Brain Cingulate Gyrus	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10993
REST	ENCODE Transcription Factor Targets	1.0	null
histone	GeneRIF Biological Term Annotations	1.0	null
trigger	GeneRIF Biological Term Annotations	1.0	null
lipid	GeneRIF Biological Term Annotations	1.0	null
gastric	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_Panc1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13768
renal glomerulus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.51453
H3K4me3_A549_hg19_4	ENCODE Histone Modification Site Profiles	1.0	null
HNF4A	ENCODE Transcription Factor Targets	1.0	null
p300	GeneRIF Biological Term Annotations	1.0	null
mir17	GeneRIF Biological Term Annotations	1.0	null
BHLHE40	ENCODE Transcription Factor Targets	1.0	null
mechanisms	GeneRIF Biological Term Annotations	1.0	null
challenge	GeneRIF Biological Term Annotations	1.0	null
reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045949
filtration	GeneRIF Biological Term Annotations	1.0	null
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054759
SOX2_Deficiency_GDS4853_321_human_AZ-521 gastric cancer (GC) cell line - 18 Hours	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.149926
H3K27me3_erythroblast_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
adrenal gland	GTEx Tissue Gene Expression Profiles	-1.0	-1.01385
CAL-39	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
H3K27me3_erythroblast_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
fibrosis	GeneRIF Biological Term Annotations	1.0	null
BT-474	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.827208
abnormal urine protein level	MGI Mouse Phenotype Associations 2023	1.0	null
neck	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066929
regulated	GeneRIF Biological Term Annotations	1.0	null
caco-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.227186
HNF4G	ENCODE Transcription Factor Targets	1.0	null
SNU283	CCLE Cell Line Gene CNV Profiles	-1.0	-1.88174
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057346
endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.067299
ulcerative colitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.28294
adjacent	GeneRIF Biological Term Annotations	1.0	null
larynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.149446
pancreatic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.240216
bone cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.088016
liver cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.28831
H3K4me1_cortical plate_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
renal corpuscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.577615
regulatory	GeneRIF Biological Term Annotations	1.0	null
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.169859
SW 620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06409
BACH1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
non-small cell lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.345558
hep-g2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.257237
CTCF_A549_hg19_9	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RBBP5	ENCODE Transcription Factor Targets	1.0	null
posttranscriptional	GeneRIF Biological Term Annotations	1.0	null
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45004
CTCF_G1E-ER4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.048093
diabetic	GeneRIF Biological Term Annotations	1.0	null
based	GeneRIF Biological Term Annotations	1.0	null
NCI-H460	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.909343
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.214954
H3K4me1_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
Non-alcoholic Fatty Liver Disease	CTD Gene-Disease Associations	1.0	1.03678
downregulation	GeneRIF Biological Term Annotations	1.0	null
ercc3	GeneRIF Biological Term Annotations	1.0	null
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.79931
mesangial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.444499
HCC44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10669
NCI-H1882	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.909343
ZNF384_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
colon cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.405305
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.61941
POLR2AphosphoS5_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BCL3_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
then	GeneRIF Biological Term Annotations	1.0	null
nephron	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.796041
H3K27me3_G1E-ER4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal urine protein level	MPO Gene-Phenotype Associations	1.0	null
intestinal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.302838
ES2	CCLE Cell Line Gene CNV Profiles	1.0	1.46171
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11134
gastric mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.100259
H3K27me3_megakaryocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H4K8ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
PPARG	ChEA Transcription Factor Targets	1.0	null
bim	GeneRIF Biological Term Annotations	1.0	null
abnormal kidney morphology	MGI Mouse Phenotype Associations 2023	1.0	null
nsclc	GeneRIF Biological Term Annotations	1.0	null
MDAMB134VI	CCLE Cell Line Gene CNV Profiles	-1.0	-2.23749
abomasum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.092875
related	GeneRIF Biological Term Annotations	1.0	null
POLR2A_HeLa-S3_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
infection	GeneRIF Biological Term Annotations	1.0	null
POLR2A_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS2_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_kidney_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_megakaryocyte_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
MAZ_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
inflammatory bowel disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.249608
samples	GeneRIF Biological Term Annotations	1.0	null
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.7105
synthase	GeneRIF Biological Term Annotations	1.0	null
MAX	ENCODE Transcription Factor Targets	1.0	null
ovary cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.249653
PECAPJ34CLONEC12	CCLE Cell Line Gene CNV Profiles	1.0	2.32002
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20256
crohn's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.240497
nuclear dna-directed rna polymerase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.730628
artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053809
POLR2A_liver_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
migrationpromoting	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_liver_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
colonic epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.60893
effects	GeneRIF Biological Term Annotations	1.0	null
pretherapeutic	GeneRIF Biological Term Annotations	1.0	null
colon	GTEx Tissue Gene Expression Profiles	1.0	1.40705
colonic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.635572
lung cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.375743
ZC3H11A_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
head kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.250627
abnormal glomerular mesangium morphology	MPO Gene-Phenotype Associations	1.0	null
RBPJ-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
including	GeneRIF Biological Term Annotations	1.0	null
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00655
iga glomerulonephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.508808
gastric cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.096301
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
colon	GeneRIF Biological Term Annotations	1.0	null
dicer1	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16678
renal tubule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.43989
GATA1-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
EP300_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hepatocyte	GeneRIF Biological Term Annotations	1.0	null
dna-directed rna polymerase ii, holoenzyme	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.730628
H3K4me1_ES-E14_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_Colonic Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
gastric cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.092304
CAMA-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.06407
hbx	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_HepG2_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
19807731-Figure1	GeneSigDB Published Gene Signatures	1.0	null
player	GeneRIF Biological Term Annotations	1.0	null
mir192215	GeneRIF Biological Term Annotations	1.0	null
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053301
H3K27me3_G1E-ER4_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.959449
20448109-Table2	GeneSigDB Published Gene Signatures	1.0	null
H3K27ac_bone marrow_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
ovary cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.085784
core	GeneRIF Biological Term Annotations	1.0	null
POLR2A_kidney_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
candidate	GeneRIF Biological Term Annotations	1.0	null
glomerulonephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.582773
H3K4ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
nucleoplasm part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.158129
mir125b	GeneRIF Biological Term Annotations	1.0	null
disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040659
CTCF_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
duodenum adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.19921
POLR2A_bone marrow macrophage_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_iPS DF 6.9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
bone cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.15339
IGR1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59576
mir34a	GeneRIF Biological Term Annotations	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
treatment	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_megakaryocyte_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KMS20	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68077
injury	GeneRIF Biological Term Annotations	1.0	null
hepg2	GeneRIF Biological Term Annotations	1.0	null
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80021
JHH5	CCLE Cell Line Gene CNV Profiles	1.0	1.55219
histologic	GeneRIF Biological Term Annotations	1.0	null
epithelial ovarian cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.360782
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.2398
regulators	GeneRIF Biological Term Annotations	1.0	null
monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048777
exosome (rnase complex)	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.837351
CORL95	CCLE Cell Line Gene CNV Profiles	-1.0	-2.89749
bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048254
esophageal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.564112
POLR2AphosphoS5_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
squamous	GeneRIF Biological Term Annotations	1.0	null
jj012 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.52808
pancreatic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.25457
bronchogenic carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.290652
HOP-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.80332
therapeutic	GeneRIF Biological Term Annotations	1.0	null
HCC1319	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13866
mirnas	GeneRIF Biological Term Annotations	1.0	null
underexpressed	GeneRIF Biological Term Annotations	1.0	null
RAD21	ENCODE Transcription Factor Targets	1.0	null
prediabetes syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.163111
NCI-H2023	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.908326
rectal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.581218
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.294223
H3K9ac_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
showed	GeneRIF Biological Term Annotations	1.0	null
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.22852
epithelial	GeneRIF Biological Term Annotations	1.0	null
POLR2A_A549_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
salivary gland	GTEx Tissue Gene Expression Profiles	-1.0	-1.01385
EBNA2-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
ovary	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079913
POLR2A_HepG2_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
rectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.171619
vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.061399
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.818994
inhibition	GeneRIF Biological Term Annotations	1.0	null
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.977936
ML1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52378
20068076-SuppTable4	GeneSigDB Published Gene Signatures	1.0	null
NCI-H727	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.80332
H3K9ac_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
thalamic nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.110334
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39293
POLR2AphosphoS2_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ovarian cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.254183
level	GeneRIF Biological Term Annotations	1.0	null
ZNF143_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
micrornas	GeneRIF Biological Term Annotations	1.0	null
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052343
antral mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.212586
MYC_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gastrointestinal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.155933
ZNF384_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
extracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.137192
H3K36me3_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TCF12_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CAL 27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.953483
toxic	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_MEL cell line_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
thymidylate	GeneRIF Biological Term Annotations	1.0	null
volunteers	GeneRIF Biological Term Annotations	1.0	null
19924232-TableS3	GeneSigDB Published Gene Signatures	1.0	null
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20256
H3K27ac_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826606
MAZ	ENCODE Transcription Factor Targets	1.0	null
glomerulosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.840525
mir320a	GeneRIF Biological Term Annotations	1.0	null
sip1	GeneRIF Biological Term Annotations	1.0	null
primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.04428
acetylation	GeneRIF Biological Term Annotations	1.0	null
SPI1	ChEA Transcription Factor Targets	1.0	null
MEL-HO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62685
polyps	GeneRIF Biological Term Annotations	1.0	null
BT-483	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.84873
negatively	GeneRIF Biological Term Annotations	1.0	null
membrane-bounded vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.062651
OVCAR8	CCLE Cell Line Gene CNV Profiles	1.0	1.39712
stem	GeneRIF Biological Term Annotations	1.0	null
H2BK20ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
tubular	GeneRIF Biological Term Annotations	1.0	null
SNU-668	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03258
abnormal urine homeostasis	MPO Gene-Phenotype Associations	1.0	null
integrator complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.85388
hepatoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075945
mir30c	GeneRIF Biological Term Annotations	1.0	null
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.528323
esophageal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.251606
H3K27me3_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.334865
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.861818
identify	GeneRIF Biological Term Annotations	1.0	null
chondrosarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.489057
H3K4me1_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
pancreatic	GeneRIF Biological Term Annotations	1.0	null
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67664
newly	GeneRIF Biological Term Annotations	1.0	null
CAL27	CCLE Cell Line Gene CNV Profiles	1.0	1.94832
H3K9ac_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
HDAC1	ENCODE Transcription Factor Targets	1.0	null
gastric antrum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.179408
HDAC2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
POLR2A_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
YY1-22570637-MALME-3M-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_megakaryocyte_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
breast	GeneRIF Biological Term Annotations	1.0	null
proliferation	GeneRIF Biological Term Annotations	1.0	null
HDAC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060579
H2AFZ_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.939119
BCL3	ENCODE Transcription Factor Targets	1.0	null
contributes	GeneRIF Biological Term Annotations	1.0	null
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
change	GeneRIF Biological Term Annotations	1.0	null
rate	GeneRIF Biological Term Annotations	1.0	null
MAFF	ENCODE Transcription Factor Targets	1.0	null
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.908611
H3K4me1_lung_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051805
using	GeneRIF Biological Term Annotations	1.0	null
carbohydrate metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.072941
recent	GeneRIF Biological Term Annotations	1.0	null
19503096-Figure1ab	GeneSigDB Published Gene Signatures	1.0	null
H3K4me3_Rectal Smooth Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
commensal bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.092281
POLR2A_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
colorectal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.169347
large intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.750818
repression	GeneRIF Biological Term Annotations	1.0	null
PPARG-20887899-3T3-L1 PREADIPOCYTE CELLS-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
blood	GeneRIF Biological Term Annotations	1.0	null
p300mediated	GeneRIF Biological Term Annotations	1.0	null
renal proximal tubule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.474258
H3K4me3_erythroblast_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
abnormal kidney cortex morphology	MPO Gene-Phenotype Associations	1.0	null
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826606
vivo	GeneRIF Biological Term Annotations	1.0	null
SF539	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3546
H3K36me3_small intestine_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2AFZ_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pituitary	GTEx Tissue Gene Expression Profiles	-1.0	-1.01385
H3K27ac_B cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K27me3_erythroblast_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TCF12	ENCODE Transcription Factor Targets	1.0	null
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39675
grade	GeneRIF Biological Term Annotations	1.0	null
Kidney Diseases	CTD Gene-Disease Associations	1.0	2.88009
prevented	GeneRIF Biological Term Annotations	1.0	null
mir100	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_Caco-2_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_Penis Foreskin Keratinocyte Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
forebrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057602
liver	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.627889
nephropathy	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_Duodenum Smooth Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CTCF_MEL cell line_mm9_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
binded	GeneRIF Biological Term Annotations	1.0	null
renal/urinary system phenotype	MPO Gene-Phenotype Associations	1.0	null
hepatoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.329361
esophageal squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.341863
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.175188
lung adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.214636
MELHO	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48716
adenomatous	GeneRIF Biological Term Annotations	1.0	null
adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.453716
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44121
ZNF143	ENCODE Transcription Factor Targets	1.0	null
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
SKMEL2	CCLE Cell Line Gene CNV Profiles	-1.0	-2.0082
celiac disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.191408
GTF2F1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060616
FOXA2	ENCODE Transcription Factor Targets	1.0	null
CEBPB	ENCODE Transcription Factor Targets	1.0	null
CTCF_CH12.LX_mm9_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HDAC6_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
arrest	GeneRIF Biological Term Annotations	1.0	null
medial geniculate body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.291365
overexpression	GeneRIF Biological Term Annotations	1.0	null
Necrosis	CTD Gene-Disease Associations	1.0	2.88009
U-937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971717
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	2.88009
H3K27ac_kidney_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
detection	GeneRIF Biological Term Annotations	1.0	null
NCI-H82	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03355
colonic cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.635976
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13866
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046007
proximal	GeneRIF Biological Term Annotations	1.0	null
widr cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.426109
SJSA1	CCLE Cell Line Gene CNV Profiles	1.0	1.82118
POLR2A_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir429	GeneRIF Biological Term Annotations	1.0	null
upregulation	GeneRIF Biological Term Annotations	1.0	null
diagnosed	GeneRIF Biological Term Annotations	1.0	null
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
H3K27me3_G1E-ER4_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC2270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67907
SPI1-20517297-HL60-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
modulate	GeneRIF Biological Term Annotations	1.0	null
pancreatic cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.247399
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.340019
renal parenchyma	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.340757
rectal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.581218
H3K4me1_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
nuclear	GeneRIF Biological Term Annotations	1.0	null
abnormal renal/urinary system physiology	MPO Gene-Phenotype Associations	1.0	null
L1236	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32531
NCIH650	CCLE Cell Line Gene CNV Profiles	1.0	1.3407
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.171673
mirna	GeneRIF Biological Term Annotations	1.0	null
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.439123
p53	GeneRIF Biological Term Annotations	1.0	null
lung	GeneRIF Biological Term Annotations	1.0	null
laryngeal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.644479
estimated	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.935799
H3K4me3_epithelial cell of proximal tubule_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39675
RFX5	ENCODE Transcription Factor Targets	1.0	null
H3K4me3_HepG2_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_Fetal Brain	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
colorectal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.460506
KDM5B	ENCODE Transcription Factor Targets	1.0	null
chromatin	GeneRIF Biological Term Annotations	1.0	null
blastema	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.352969
cervix uteri	GTEx Tissue Gene Expression Profiles	-1.0	-1.01385
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.227988
COLO-818	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09335
network	GeneRIF Biological Term Annotations	1.0	null
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62685
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.59327
YD38	CCLE Cell Line Gene CNV Profiles	1.0	1.39987
necessary	GeneRIF Biological Term Annotations	1.0	null
abnormal renal corpuscle morphology	MPO Gene-Phenotype Associations	1.0	null
abnormal mesangial matrix morphology	MPO Gene-Phenotype Associations	1.0	null
extracellular vesicular exosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.83781
NFYB_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27ac_iPS DF 19.11	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
ets1	GeneRIF Biological Term Annotations	1.0	null
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.393936
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20256
COLO678	CCLE Cell Line Gene CNV Profiles	1.0	1.3978
connective tissue cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048121
downregulated	GeneRIF Biological Term Annotations	1.0	null
mir192	GeneRIF Biological Term Annotations	1.0	null
subset	GeneRIF Biological Term Annotations	1.0	null
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.825322
abnormal renal/urinary system morphology	MPO Gene-Phenotype Associations	1.0	null
COV362	CCLE Cell Line Gene CNV Profiles	1.0	1.86127
EBC1	CCLE Cell Line Gene CNV Profiles	1.0	1.43597
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08143
heart	GeneRIF Biological Term Annotations	1.0	null
PANC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67664
SAP30	ENCODE Transcription Factor Targets	1.0	null
either	GeneRIF Biological Term Annotations	1.0	null
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.17141
colorectal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.58242
particularly	GeneRIF Biological Term Annotations	1.0	null
antropyloric mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.1679
hepatocellular carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.310652
MAX_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JHH-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19252
C170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.93944
POLR2AphosphoS2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
differentially	GeneRIF Biological Term Annotations	1.0	null
CGTHW1	CCLE Cell Line Gene CNV Profiles	1.0	1.36293
pancreatic carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.124825
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46673
cancers	GeneRIF Biological Term Annotations	1.0	null
opening	GeneRIF Biological Term Annotations	1.0	null
significant	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.995211
ES-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0241
non-small cell lung cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.540981
mir194	GeneRIF Biological Term Annotations	1.0	null
intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.180652
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826606
healthy	GeneRIF Biological Term Annotations	1.0	null
peripheral	GeneRIF Biological Term Annotations	1.0	null
part	GeneRIF Biological Term Annotations	1.0	null
ercc4	GeneRIF Biological Term Annotations	1.0	null
enterocyte	GeneRIF Biological Term Annotations	1.0	null
abnormal mesangial matrix morphology	MGI Mouse Phenotype Associations 2023	1.0	null
SNU761	CCLE Cell Line Gene CNV Profiles	-1.0	-2.62741
genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047215
CTCF	ENCODE Transcription Factor Targets	1.0	null
extracellular vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.83781
immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042259
NCOR1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nephrotic syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.417644
CTCF_MEL cell line_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
altered	GeneRIF Biological Term Annotations	1.0	null
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.397471
Liver Neoplasms	CTD Gene-Disease Associations	1.0	1.48376
nephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.59952
failure	GeneRIF Biological Term Annotations	1.0	null
ELF5	JASPAR Predicted Transcription Factor Targets	1.0	null
clinical	GeneRIF Biological Term Annotations	1.0	null
Lung Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
duodenal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.61175
non-small cell lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.261952
histopathologic	GeneRIF Biological Term Annotations	1.0	null
18308931-Table3	GeneSigDB Published Gene Signatures	1.0	null
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826606
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073444
duodenum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.18588
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
H3K4me1_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
CEBPB_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
alteration	GeneRIF Biological Term Annotations	1.0	null
H3K4me2_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
than	GeneRIF Biological Term Annotations	1.0	null
regulating	GeneRIF Biological Term Annotations	1.0	null
panc-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.466111
musculoskeletal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046761
nephrosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.388166
H3K4me1_spleen_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
decreased	GeneRIF Biological Term Annotations	1.0	null
acquired metabolic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045698
Breast Neoplasms	CTD Gene-Disease Associations	1.0	1.01099
H3K4me1_G1E_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
MOR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.909343
NCI-H716	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13866
NCIH441	CCLE Cell Line Gene CNV Profiles	1.0	1.64326
H3K79me2_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
catalytic complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.060689
microrna192	GeneRIF Biological Term Annotations	1.0	null
PL-21	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.951737
apoptosis	GeneRIF Biological Term Annotations	1.0	null
pleural cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.188632
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.249664
prolonged	GeneRIF Biological Term Annotations	1.0	null
diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.09665
COLO 678	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.957547
H2AFZ_B cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.711319
cystic kidney	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.248905
colorectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.767783
H3K27ac_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
rna polymerase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.622229
HCC1395	CCLE Cell Line Gene CNV Profiles	1.0	1.48503
tgfbeta	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
15284443-Table5	GeneSigDB Published Gene Signatures	1.0	null
Disease Models, Animal	CTD Gene-Disease Associations	1.0	1.10175
BT474	CCLE Cell Line Gene CNV Profiles	1.0	2.0607
suggested	GeneRIF Biological Term Annotations	1.0	null
HDAC2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
invasion	GeneRIF Biological Term Annotations	1.0	null
NCI-H810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.909343
epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.483596
CTCF_G1E-ER4_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_cortical plate_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
showing	GeneRIF Biological Term Annotations	1.0	null
autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050249
NCOR1	ENCODE Transcription Factor Targets	1.0	null
lung adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.278251
intestinal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.624254
systemic	GeneRIF Biological Term Annotations	1.0	null
decreased physiological sensitivity to xenobiotic	MGI Mouse Phenotype Associations 2023	1.0	null
observations	GeneRIF Biological Term Annotations	1.0	null
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.825322
throat	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071661
H3K4me1_erythroblast_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_megakaryocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
distinguishes	GeneRIF Biological Term Annotations	1.0	null
noncancerous	GeneRIF Biological Term Annotations	1.0	null
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
abnormal renal glomerulus morphology	MPO Gene-Phenotype Associations	1.0	null
esophageal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.1199
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07711
H3K18ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
ovary cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.108976
H3K9ac_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.79931
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25532