association	dataset	threshold value	standardized value
conjunctival	GeneRIF Biological Term Annotations	1.0	null
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.85337
WM115	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61939
been	GeneRIF Biological Term Annotations	1.0	null
efficacy	GeneRIF Biological Term Annotations	1.0	null
GRANTA-519	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.63212
SPI1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulating	GeneRIF Biological Term Annotations	1.0	null
sip1	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
some	GeneRIF Biological Term Annotations	1.0	null
definitive	GeneRIF Biological Term Annotations	1.0	null
mir200c	GeneRIF Biological Term Annotations	1.0	null
evidence	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_bronchial epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_bone marrow macrophage_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
indicated	GeneRIF Biological Term Annotations	1.0	null
epithelium	GeneRIF Biological Term Annotations	1.0	null
retention	GeneRIF Biological Term Annotations	1.0	null
iii	GeneRIF Biological Term Annotations	1.0	null
tspan1	GeneRIF Biological Term Annotations	1.0	null
mammary	GeneRIF Biological Term Annotations	1.0	null
demonstrated	GeneRIF Biological Term Annotations	1.0	null
they	GeneRIF Biological Term Annotations	1.0	null
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
orchestrates	GeneRIF Biological Term Annotations	1.0	null
Learning Disorders	CTD Gene-Disease Associations	1.0	1.01701
upregulation	GeneRIF Biological Term Annotations	1.0	null
H3K9ac_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
EVSAT	CCLE Cell Line Gene CNV Profiles	1.0	1.74653
POLR2A_HGPS cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
TBL1XR1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
distinct	GeneRIF Biological Term Annotations	1.0	null
micrornas	GeneRIF Biological Term Annotations	1.0	null
Prenatal Injuries	CTD Gene-Disease Associations	1.0	1.16001
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
vitro	GeneRIF Biological Term Annotations	1.0	null
restore	GeneRIF Biological Term Annotations	1.0	null
IMR32	CCLE Cell Line Gene CNV Profiles	-1.0	-1.82891
paclitaxelbased	GeneRIF Biological Term Annotations	1.0	null
desmosomal	GeneRIF Biological Term Annotations	1.0	null
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	1.0	1.63952
established	GeneRIF Biological Term Annotations	1.0	null
betacatenin	GeneRIF Biological Term Annotations	1.0	null
family	GeneRIF Biological Term Annotations	1.0	null
MKN74	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81546
SNU1196	CCLE Cell Line Gene CNV Profiles	1.0	1.36236
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12119
mirna	GeneRIF Biological Term Annotations	1.0	null
neoplasms	GeneRIF Biological Term Annotations	1.0	null
MAX	ENCODE Transcription Factor Targets	1.0	null
H3K4me1_ES-Bruce4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
erythroidderived	GeneRIF Biological Term Annotations	1.0	null
roles	GeneRIF Biological Term Annotations	1.0	null
KPNRTBM1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38342
survival	GeneRIF Biological Term Annotations	1.0	null
mir141	GeneRIF Biological Term Annotations	1.0	null
reactivation	GeneRIF Biological Term Annotations	1.0	null
release	GeneRIF Biological Term Annotations	1.0	null
SK-CO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19492
HCC2218	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44957
NCIH1563	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32506
POLR2A_HepG2_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cadherins	GeneRIF Biological Term Annotations	1.0	null
LXFL529	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31485
especially	GeneRIF Biological Term Annotations	1.0	null
cancers	GeneRIF Biological Term Annotations	1.0	null
pathogenesis	GeneRIF Biological Term Annotations	1.0	null
thus	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_bronchial epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
directly	GeneRIF Biological Term Annotations	1.0	null
converts	GeneRIF Biological Term Annotations	1.0	null
erbb	GeneRIF Biological Term Annotations	1.0	null
Primary hematopoietic stem cells G-CSF-mobilized Female RO_01480	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	1.0	1.22305
fibrosis	GeneRIF Biological Term Annotations	1.0	null
nasopharyngeal	GeneRIF Biological Term Annotations	1.0	null
CBX2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
there	GeneRIF Biological Term Annotations	1.0	null
RUNX3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
all	GeneRIF Biological Term Annotations	1.0	null
including	GeneRIF Biological Term Annotations	1.0	null
stress	GeneRIF Biological Term Annotations	1.0	null
ZBTB7A_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
progesterone	GeneRIF Biological Term Annotations	1.0	null
require	GeneRIF Biological Term Annotations	1.0	null
20028859-TableS2	GeneSigDB Published Gene Signatures	1.0	null
liver	GeneRIF Biological Term Annotations	1.0	null
COLO668	CCLE Cell Line Gene CNV Profiles	1.0	1.49485
inhibitor	GeneRIF Biological Term Annotations	1.0	null
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.72541
Precancerous Conditions	CTD Gene-Disease Associations	1.0	1.35213
regarding	GeneRIF Biological Term Annotations	1.0	null
histology	GeneRIF Biological Term Annotations	1.0	null
posttranscriptionally	GeneRIF Biological Term Annotations	1.0	null
POLR2A_small intestine_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Inflammation	CTD Gene-Disease Associations	1.0	1.25588
miR-targeted genes in leukocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
BHLHE40	ENCODE Transcription Factor Targets	1.0	null
grade	GeneRIF Biological Term Annotations	1.0	null
Liver Neoplasms, Experimental	CTD Gene-Disease Associations	1.0	1.40457
type	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_ES-E14_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EP300_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
addition	GeneRIF Biological Term Annotations	1.0	null
pancreatic	GeneRIF Biological Term Annotations	1.0	null
ZBTB7A_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
powerful	GeneRIF Biological Term Annotations	1.0	null
CHAGOK1	CCLE Cell Line Gene CNV Profiles	1.0	1.6122
SUZ12_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lost	GeneRIF Biological Term Annotations	1.0	null
poor	GeneRIF Biological Term Annotations	1.0	null
POLR2A_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
markers	GeneRIF Biological Term Annotations	1.0	null
clear	GeneRIF Biological Term Annotations	1.0	null
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13767
basal	GeneRIF Biological Term Annotations	1.0	null
ctnnb1	GeneRIF Biological Term Annotations	1.0	null
HCC44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.862631
transcription	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
E2F6_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
stat4	GeneRIF Biological Term Annotations	1.0	null
pterygium	GeneRIF Biological Term Annotations	1.0	null
multiple	GeneRIF Biological Term Annotations	1.0	null
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.917543
molecular	GeneRIF Biological Term Annotations	1.0	null
delaying	GeneRIF Biological Term Annotations	1.0	null
members	GeneRIF Biological Term Annotations	1.0	null
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07491
silencing	GeneRIF Biological Term Annotations	1.0	null
NAMALWA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44272
carcinomas	GeneRIF Biological Term Annotations	1.0	null
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16211
kiss1	GeneRIF Biological Term Annotations	1.0	null
mirnas	GeneRIF Biological Term Annotations	1.0	null
mir182	GeneRIF Biological Term Annotations	1.0	null
decline	GeneRIF Biological Term Annotations	1.0	null
recurrent	GeneRIF Biological Term Annotations	1.0	null
methylation	GeneRIF Biological Term Annotations	1.0	null
ap2gamma	GeneRIF Biological Term Annotations	1.0	null
mir200a200b429	GeneRIF Biological Term Annotations	1.0	null
mir212	GeneRIF Biological Term Annotations	1.0	null
JHH1	CCLE Cell Line Gene CNV Profiles	1.0	1.89608
EZH2	ENCODE Transcription Factor Targets	1.0	null
clusters	GeneRIF Biological Term Annotations	1.0	null
sufficient	GeneRIF Biological Term Annotations	1.0	null
induced	GeneRIF Biological Term Annotations	1.0	null
H3K9ac_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38198
H3K4me2_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
MAZ_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
targeting	GeneRIF Biological Term Annotations	1.0	null
progressionfree	GeneRIF Biological Term Annotations	1.0	null
first	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
pathways	GeneRIF Biological Term Annotations	1.0	null
lung	GeneRIF Biological Term Annotations	1.0	null
downstream	GeneRIF Biological Term Annotations	1.0	null
zeb1	GeneRIF Biological Term Annotations	1.0	null
proved	GeneRIF Biological Term Annotations	1.0	null
transition	GeneRIF Biological Term Annotations	1.0	null
effect	GeneRIF Biological Term Annotations	1.0	null
aggressive	GeneRIF Biological Term Annotations	1.0	null
tumorigenesis	GeneRIF Biological Term Annotations	1.0	null
mirnamrna	GeneRIF Biological Term Annotations	1.0	null
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.877346
HDAC6_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
combination	GeneRIF Biological Term Annotations	1.0	null
emtassociated	GeneRIF Biological Term Annotations	1.0	null
HCC2218	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58871
H3K4me3_kidney epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
regulatory	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_lung_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
sox17	GeneRIF Biological Term Annotations	1.0	null
zeb12	GeneRIF Biological Term Annotations	1.0	null
malt	GeneRIF Biological Term Annotations	1.0	null
network	GeneRIF Biological Term Annotations	1.0	null
regulated	GeneRIF Biological Term Annotations	1.0	null
H3K79me2_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
sensitivity	GeneRIF Biological Term Annotations	1.0	null
NCI-H196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.966673
WM-115	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56903
H3K27me3_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hdac4	GeneRIF Biological Term Annotations	1.0	null
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08402
treatment	GeneRIF Biological Term Annotations	1.0	null
induce	GeneRIF Biological Term Annotations	1.0	null
endoderm	GeneRIF Biological Term Annotations	1.0	null
STAT1	ENCODE Transcription Factor Targets	1.0	null
SU-DHL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.78576
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07133
differentially	GeneRIF Biological Term Annotations	1.0	null
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31485
H3K4me3_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
CBX2	ENCODE Transcription Factor Targets	1.0	null
immediate	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HDAC2	ENCODE Transcription Factor Targets	1.0	null
H3K4me1_thymus_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
bind	GeneRIF Biological Term Annotations	1.0	null
differentiated	GeneRIF Biological Term Annotations	1.0	null
synergy	GeneRIF Biological Term Annotations	1.0	null
HDAC1	ENCODE Transcription Factor Targets	1.0	null
prostate	GeneRIF Biological Term Annotations	1.0	null
pten	GeneRIF Biological Term Annotations	1.0	null
cluster	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
CHP126	CCLE Cell Line Gene CNV Profiles	-1.0	-1.56472
apoptosis	GeneRIF Biological Term Annotations	1.0	null
EBF1	ENCODE Transcription Factor Targets	1.0	null
meningiomas	GeneRIF Biological Term Annotations	1.0	null
critical	GeneRIF Biological Term Annotations	1.0	null
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.59041
WSU-NHL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.61458
MAZ_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07133
U-698-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25386
H3K4me1_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
tcells	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_G1E_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
mir200c141	GeneRIF Biological Term Annotations	1.0	null
each	GeneRIF Biological Term Annotations	1.0	null
flt1	GeneRIF Biological Term Annotations	1.0	null
dcamkl1	GeneRIF Biological Term Annotations	1.0	null
their	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
reduced	GeneRIF Biological Term Annotations	1.0	null
along	GeneRIF Biological Term Annotations	1.0	null
EGR1	ENCODE Transcription Factor Targets	1.0	null
negative	GeneRIF Biological Term Annotations	1.0	null
observed	GeneRIF Biological Term Annotations	1.0	null
GABPA_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
spindle	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_CH12.LX_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08339
loss	GeneRIF Biological Term Annotations	1.0	null
tgfbetamir200mig6	GeneRIF Biological Term Annotations	1.0	null
functions	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
knockdown	GeneRIF Biological Term Annotations	1.0	null
let7	GeneRIF Biological Term Annotations	1.0	null
H1 Cells	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-0.931441
coordinate	GeneRIF Biological Term Annotations	1.0	null
MAX_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.918184
SIMA	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45547
leading	GeneRIF Biological Term Annotations	1.0	null
downregulation	GeneRIF Biological Term Annotations	1.0	null
regulator	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_bronchial epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_CH12.LX_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
UBTF_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
skov3	GeneRIF Biological Term Annotations	1.0	null
p38alpha	GeneRIF Biological Term Annotations	1.0	null
TP63	ChEA Transcription Factor Targets	1.0	null
multifunctional	GeneRIF Biological Term Annotations	1.0	null
suppressive	GeneRIF Biological Term Annotations	1.0	null
migration	GeneRIF Biological Term Annotations	1.0	null
thrombospondin	GeneRIF Biological Term Annotations	1.0	null
transcripts	GeneRIF Biological Term Annotations	1.0	null
restoring	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2257
keap1nrf2	GeneRIF Biological Term Annotations	1.0	null
ccrcc	GeneRIF Biological Term Annotations	1.0	null
19895320-Table1	GeneSigDB Published Gene Signatures	1.0	null
hsf1_19179333_rko_colon_carcinoma_lof_human_gpl6244_gse12762	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.428698
TK-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.98265
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.6677
intestinal	GeneRIF Biological Term Annotations	1.0	null
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04448
maintain	GeneRIF Biological Term Annotations	1.0	null
controls	GeneRIF Biological Term Annotations	1.0	null
likely	GeneRIF Biological Term Annotations	1.0	null
inhibits	GeneRIF Biological Term Annotations	1.0	null
mechanisms	GeneRIF Biological Term Annotations	1.0	null
enhancing	GeneRIF Biological Term Annotations	1.0	null
GRANTA519	CCLE Cell Line Gene CNV Profiles	1.0	1.497
mir146a1	GeneRIF Biological Term Annotations	1.0	null
stemlike	GeneRIF Biological Term Annotations	1.0	null
destabilizes	GeneRIF Biological Term Annotations	1.0	null
NCI-H1882	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.6907
KNS42	CCLE Cell Line Gene CNV Profiles	-1.0	-2.83578
factors	GeneRIF Biological Term Annotations	1.0	null
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.917543
IMR-32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.84815
epithelialtomesenchymal	GeneRIF Biological Term Annotations	1.0	null
cervical	GeneRIF Biological Term Annotations	1.0	null
RBBP5	ENCODE Transcription Factor Targets	1.0	null
NCIH292	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67432
ZBTB7A_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
kelchlike	GeneRIF Biological Term Annotations	1.0	null
KMS28BM	CCLE Cell Line Gene CNV Profiles	1.0	1.35766
endometrial	GeneRIF Biological Term Annotations	1.0	null
RCOR1_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SMC3_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
suggested	GeneRIF Biological Term Annotations	1.0	null
motility	GeneRIF Biological Term Annotations	1.0	null
suppresses	GeneRIF Biological Term Annotations	1.0	null
overexpressing	GeneRIF Biological Term Annotations	1.0	null
NCIH1650	CCLE Cell Line Gene CNV Profiles	-1.0	-2.04968
NCIH1963	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44114
ZBTB7A	ENCODE Transcription Factor Targets	1.0	null
switch	GeneRIF Biological Term Annotations	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
SPI1	ENCODE Transcription Factor Targets	1.0	null
Ovarian Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04386
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.877346
pleiotropic	GeneRIF Biological Term Annotations	1.0	null
BFTC909	CCLE Cell Line Gene CNV Profiles	1.0	2.01601
H3K4me1_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
chemoresistance	GeneRIF Biological Term Annotations	1.0	null
NCI-H2795	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52122
HCC1263	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00508
H3K27me3_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
linking	GeneRIF Biological Term Annotations	1.0	null
SUPT11	CCLE Cell Line Gene CNV Profiles	1.0	1.43956
phenotypes	GeneRIF Biological Term Annotations	1.0	null
therapy	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
distinguish	GeneRIF Biological Term Annotations	1.0	null
repression	GeneRIF Biological Term Annotations	1.0	null
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19555
hfe	GeneRIF Biological Term Annotations	1.0	null
WM-266-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27368
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.80932
egfdriven	GeneRIF Biological Term Annotations	1.0	null
NUGC-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07491
POLR2A_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
induces	GeneRIF Biological Term Annotations	1.0	null
ovarian	GeneRIF Biological Term Annotations	1.0	null
eoc	GeneRIF Biological Term Annotations	1.0	null
why	GeneRIF Biological Term Annotations	1.0	null
RT4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38198
oncogene	GeneRIF Biological Term Annotations	1.0	null
potentially	GeneRIF Biological Term Annotations	1.0	null
exosomes	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_erythroblast_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.85337
epithelialmesenchymal	GeneRIF Biological Term Annotations	1.0	null
antiinvasive	GeneRIF Biological Term Annotations	1.0	null
dependency	GeneRIF Biological Term Annotations	1.0	null
inhibitors	GeneRIF Biological Term Annotations	1.0	null
SNU738	CCLE Cell Line Gene CNV Profiles	-1.0	-2.13504
sim2s	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_placenta_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
pattern	GeneRIF Biological Term Annotations	1.0	null
biphasic	GeneRIF Biological Term Annotations	1.0	null
tumors	GeneRIF Biological Term Annotations	1.0	null
mir200bc429	GeneRIF Biological Term Annotations	1.0	null
BT-483	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38134
oxidative	GeneRIF Biological Term Annotations	1.0	null
Liver Neoplasms	CTD Gene-Disease Associations	1.0	1.74641
labor	GeneRIF Biological Term Annotations	1.0	null
vivo	GeneRIF Biological Term Annotations	1.0	null
ovcar3	GeneRIF Biological Term Annotations	1.0	null
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19555
FXR	MotifMap Predicted Transcription Factor Targets	1.0	null
appear	GeneRIF Biological Term Annotations	1.0	null
predict	GeneRIF Biological Term Annotations	1.0	null
translational	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_Colonic Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
reveal	GeneRIF Biological Term Annotations	1.0	null
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.877346
HDAC2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_keratinocyte_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.921843
RBBP5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me2_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
RAD21	ENCODE Transcription Factor Targets	1.0	null
maintenance	GeneRIF Biological Term Annotations	1.0	null
microrna	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_ES-E14_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
E2F6	ENCODE Transcription Factor Targets	1.0	null
indicates	GeneRIF Biological Term Annotations	1.0	null
state	GeneRIF Biological Term Annotations	1.0	null
stage	GeneRIF Biological Term Annotations	1.0	null
oncogenesis	GeneRIF Biological Term Annotations	1.0	null
least	GeneRIF Biological Term Annotations	1.0	null
direct	GeneRIF Biological Term Annotations	1.0	null
metastasis	GeneRIF Biological Term Annotations	1.0	null
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.95528
POLR2A_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir200a	GeneRIF Biological Term Annotations	1.0	null
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.912764
H3K4me1_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCIH211	CCLE Cell Line Gene CNV Profiles	1.0	1.99238
microrna200a	GeneRIF Biological Term Annotations	1.0	null
NCI-H1648	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.94582
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	1.34518
hemangioblastomas	GeneRIF Biological Term Annotations	1.0	null
TBL1XR1	ENCODE Transcription Factor Targets	1.0	null
key	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_MEL cell line_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
15284443-Table6	GeneSigDB Published Gene Signatures	1.0	null
atrx	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
negatively	GeneRIF Biological Term Annotations	1.0	null
DMS454	CCLE Cell Line Gene CNV Profiles	1.0	2.36403
mir	GeneRIF Biological Term Annotations	1.0	null
HUH6	CCLE Cell Line Gene CNV Profiles	1.0	1.70817
UBTF_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
modulate	GeneRIF Biological Term Annotations	1.0	null
untranslated	GeneRIF Biological Term Annotations	1.0	null
t98g	GeneRIF Biological Term Annotations	1.0	null
RCOR1	ENCODE Transcription Factor Targets	1.0	null
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12316
focal	GeneRIF Biological Term Annotations	1.0	null
promoter	GeneRIF Biological Term Annotations	1.0	null
resulting	GeneRIF Biological Term Annotations	1.0	null
correlated	GeneRIF Biological Term Annotations	1.0	null
Hyperplasia	CTD Gene-Disease Associations	1.0	1.3484
invasive	GeneRIF Biological Term Annotations	1.0	null
mechanistic	GeneRIF Biological Term Annotations	1.0	null
mir155	GeneRIF Biological Term Annotations	1.0	null
serve	GeneRIF Biological Term Annotations	1.0	null
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.911861
Primary T cells from cord blood	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	1.0	0.90831
detection	GeneRIF Biological Term Annotations	1.0	null
emt	GeneRIF Biological Term Annotations	1.0	null
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02323
regulate	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_epithelial cell of proximal tubule_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SCLC21H	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
MKN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07133
nrf2	GeneRIF Biological Term Annotations	1.0	null
mesenchymal	GeneRIF Biological Term Annotations	1.0	null
UBTF	ENCODE Transcription Factor Targets	1.0	null
H3K4me3_G1E_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
nuclear	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_small intestine_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04386
formation	GeneRIF Biological Term Annotations	1.0	null
crc	GeneRIF Biological Term Annotations	1.0	null
overexpression	GeneRIF Biological Term Annotations	1.0	null
confirms	GeneRIF Biological Term Annotations	1.0	null
correlation	GeneRIF Biological Term Annotations	1.0	null
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.918184
studies	GeneRIF Biological Term Annotations	1.0	null
suggests	GeneRIF Biological Term Annotations	1.0	null
CHP-212	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.5675
mir200a141	GeneRIF Biological Term Annotations	1.0	null
EP300_GM12878_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
determine	GeneRIF Biological Term Annotations	1.0	null
suppression	GeneRIF Biological Term Annotations	1.0	null
NCI-H2722	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1615
OCI-LY-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.72541
EP300_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
suffering	GeneRIF Biological Term Annotations	1.0	null
variations	GeneRIF Biological Term Annotations	1.0	null
C3A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.966673
abundant	GeneRIF Biological Term Annotations	1.0	null
keap1	GeneRIF Biological Term Annotations	1.0	null
NCI-H1650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49285
virtually	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_HepG2_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
mediator	GeneRIF Biological Term Annotations	1.0	null
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08402
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
therapeutic	GeneRIF Biological Term Annotations	1.0	null
gata4_21746915_heart_lof_mouse_gpl6246_gds3931	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.022849
CHD2	ENCODE Transcription Factor Targets	1.0	null
CEBPB_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
time	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
wasf3	GeneRIF Biological Term Annotations	1.0	null
RAD21_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
interactions	GeneRIF Biological Term Annotations	1.0	null
sp1	GeneRIF Biological Term Annotations	1.0	null
EZH2_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hcc	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
proliferation	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_LNCaP clone FGC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
explain	GeneRIF Biological Term Annotations	1.0	null
HDAC6	ENCODE Transcription Factor Targets	1.0	null
hdac4sp1mir200a	GeneRIF Biological Term Annotations	1.0	null
adhesion	GeneRIF Biological Term Annotations	1.0	null
HCC-33	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
translocation	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_bronchial epithelial cell_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
most	GeneRIF Biological Term Annotations	1.0	null
NCIH1648	CCLE Cell Line Gene CNV Profiles	1.0	1.93898
dysregulated	GeneRIF Biological Term Annotations	1.0	null
NCI-H510A	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
MYC_NB4_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
invasion	GeneRIF Biological Term Annotations	1.0	null
affect	GeneRIF Biological Term Annotations	1.0	null
zeb2	GeneRIF Biological Term Annotations	1.0	null
plcgamma1	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lymphoma	GeneRIF Biological Term Annotations	1.0	null
downregulated	GeneRIF Biological Term Annotations	1.0	null
EBF1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KDM5B	ENCODE Transcription Factor Targets	1.0	null
GABPA	ENCODE Transcription Factor Targets	1.0	null
biomarkers	GeneRIF Biological Term Annotations	1.0	null
ly2	GeneRIF Biological Term Annotations	1.0	null
contribute	GeneRIF Biological Term Annotations	1.0	null
BHLHE40_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EGR1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
prognosis	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-468	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3462
H3K27ac_MCF-7_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
suppress	GeneRIF Biological Term Annotations	1.0	null
respectively	GeneRIF Biological Term Annotations	1.0	null
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.912764
Carcinoma, Hepatocellular	CTD Gene-Disease Associations	1.0	1.19574
MDST8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.953185
effects	GeneRIF Biological Term Annotations	1.0	null
marker	GeneRIF Biological Term Annotations	1.0	null
h1299	GeneRIF Biological Term Annotations	1.0	null
dental	GeneRIF Biological Term Annotations	1.0	null
promote	GeneRIF Biological Term Annotations	1.0	null
constitute	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_keratinocyte_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
POLR2A_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH1385	CCLE Cell Line Gene CNV Profiles	-1.0	-1.87529
experimental	GeneRIF Biological Term Annotations	1.0	null
cd1331	GeneRIF Biological Term Annotations	1.0	null
Kidney Diseases	CTD Gene-Disease Associations	1.0	1.0734
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.72541
ES-I3 Cells	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-1.82142
subnetworks	GeneRIF Biological Term Annotations	1.0	null
nfkappab	GeneRIF Biological Term Annotations	1.0	null
three	GeneRIF Biological Term Annotations	1.0	null
low	GeneRIF Biological Term Annotations	1.0	null
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01439
overall	GeneRIF Biological Term Annotations	1.0	null
RELA_GM19099_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
diseases	GeneRIF Biological Term Annotations	1.0	null
mir1552	GeneRIF Biological Term Annotations	1.0	null
kinase	GeneRIF Biological Term Annotations	1.0	null
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16459
OCILY19	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6936
bladder	GeneRIF Biological Term Annotations	1.0	null
mir429	GeneRIF Biological Term Annotations	1.0	null
Fibrosis	CTD Gene-Disease Associations	1.0	1.22242
epha2	GeneRIF Biological Term Annotations	1.0	null
16934749-Table3	GeneSigDB Published Gene Signatures	1.0	null
targets	GeneRIF Biological Term Annotations	1.0	null
CHP212	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67137
Necrosis	CTD Gene-Disease Associations	1.0	1.33494
sirnamediated	GeneRIF Biological Term Annotations	1.0	null
ZBTB7A_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.54307
showed	GeneRIF Biological Term Annotations	1.0	null
mir200	GeneRIF Biological Term Annotations	1.0	null
thyroid	GeneRIF Biological Term Annotations	1.0	null
echassociated	GeneRIF Biological Term Annotations	1.0	null
only	GeneRIF Biological Term Annotations	1.0	null
recognized	GeneRIF Biological Term Annotations	1.0	null
CHD2_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
early	GeneRIF Biological Term Annotations	1.0	null
autoimmune	GeneRIF Biological Term Annotations	1.0	null
control	GeneRIF Biological Term Annotations	1.0	null
POLR2A_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CPCN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64077
underlie	GeneRIF Biological Term Annotations	1.0	null
EBF1_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27ac_heart_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
EBF1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_liver_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
renal	GeneRIF Biological Term Annotations	1.0	null
malignant	GeneRIF Biological Term Annotations	1.0	null
triple	GeneRIF Biological Term Annotations	1.0	null
includes	GeneRIF Biological Term Annotations	1.0	null
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
MYC	ENCODE Transcription Factor Targets	1.0	null
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.911861
suppressor	GeneRIF Biological Term Annotations	1.0	null
mir205	GeneRIF Biological Term Annotations	1.0	null
STAT1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04386
distant	GeneRIF Biological Term Annotations	1.0	null
EGR1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
MAX_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
epithelial	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_erythroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
suggesting	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SCLC-22H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.21888
advanced	GeneRIF Biological Term Annotations	1.0	null
tfam	GeneRIF Biological Term Annotations	1.0	null
Hepatomegaly	CTD Gene-Disease Associations	1.0	1.35792
CAR-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.47414
H3K4me1_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
repetitively	GeneRIF Biological Term Annotations	1.0	null
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83536
DMS153	CCLE Cell Line Gene CNV Profiles	1.0	1.60106
KMS-28BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2257
migrate	GeneRIF Biological Term Annotations	1.0	null
hypomethylation	GeneRIF Biological Term Annotations	1.0	null
increase	GeneRIF Biological Term Annotations	1.0	null
15284443-Table5	GeneSigDB Published Gene Signatures	1.0	null
YAPC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.911861
SMC3	ENCODE Transcription Factor Targets	1.0	null
stem	GeneRIF Biological Term Annotations	1.0	null
antitumoral	GeneRIF Biological Term Annotations	1.0	null
dysregulation	GeneRIF Biological Term Annotations	1.0	null
MYC_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44489
POLR2A_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MORCPR	CCLE Cell Line Gene CNV Profiles	1.0	1.62157
EP300	ENCODE Transcription Factor Targets	1.0	null
mirna155	GeneRIF Biological Term Annotations	1.0	null
frequently	GeneRIF Biological Term Annotations	1.0	null
KPNSI9S	CCLE Cell Line Gene CNV Profiles	-1.0	-2.67232
differentiation	GeneRIF Biological Term Annotations	1.0	null
curcumin	GeneRIF Biological Term Annotations	1.0	null
RAJI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07762
EFM19	CCLE Cell Line Gene CNV Profiles	-1.0	-2.27137
CTCF_kidney_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.59041
viral	GeneRIF Biological Term Annotations	1.0	null
BFTC-909	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27364
transformation	GeneRIF Biological Term Annotations	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11104
ovarian cancer	GAD Gene-Disease Associations	1.0	null
inhibition	GeneRIF Biological Term Annotations	1.0	null
pituitary	GTEx Tissue Gene Expression Profiles	1.0	0.928272
KPNYN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45567
mir21	GeneRIF Biological Term Annotations	1.0	null
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40846
miR-targeted genes in muscle cell - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
suppressors	GeneRIF Biological Term Annotations	1.0	null
mirna200a	GeneRIF Biological Term Annotations	1.0	null
affecting	GeneRIF Biological Term Annotations	1.0	null
initiation	GeneRIF Biological Term Annotations	1.0	null
act	GeneRIF Biological Term Annotations	1.0	null
miR-targeted genes in lymphocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
RUNX3	ENCODE Transcription Factor Targets	1.0	null
clinical	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_HepG2_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
mir200b429	GeneRIF Biological Term Annotations	1.0	null
CEBPD_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RELA	ENCODE Transcription Factor Targets	1.0	null
SNU1272	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37161
SPI1_HL-60_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
crucial	GeneRIF Biological Term Annotations	1.0	null
promotes	GeneRIF Biological Term Annotations	1.0	null
invade	GeneRIF Biological Term Annotations	1.0	null
altered	GeneRIF Biological Term Annotations	1.0	null
appears	GeneRIF Biological Term Annotations	1.0	null
display	GeneRIF Biological Term Annotations	1.0	null
GABPA_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
inversely	GeneRIF Biological Term Annotations	1.0	null
resistance	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_olfactory bulb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
HCC33	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.45215
HCC33	CCLE Cell Line Gene CNV Profiles	1.0	2.59998
pitx2	GeneRIF Biological Term Annotations	1.0	null
ubash3b	GeneRIF Biological Term Annotations	1.0	null
BCP1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49831
MYC_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
epigenetic	GeneRIF Biological Term Annotations	1.0	null
glioma	GeneRIF Biological Term Annotations	1.0	null
reliable	GeneRIF Biological Term Annotations	1.0	null
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1385
four	GeneRIF Biological Term Annotations	1.0	null
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.85337
drive	GeneRIF Biological Term Annotations	1.0	null
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.918184
mir132	GeneRIF Biological Term Annotations	1.0	null
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.965118
than	GeneRIF Biological Term Annotations	1.0	null
tgfbeta1induces	GeneRIF Biological Term Annotations	1.0	null
more	GeneRIF Biological Term Annotations	1.0	null
participate	GeneRIF Biological Term Annotations	1.0	null
ecadherin	GeneRIF Biological Term Annotations	1.0	null
identifying	GeneRIF Biological Term Annotations	1.0	null
egfr	GeneRIF Biological Term Annotations	1.0	null
stages	GeneRIF Biological Term Annotations	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.8502
NCIH510	CCLE Cell Line Gene CNV Profiles	1.0	2.20953
MAZ	ENCODE Transcription Factor Targets	1.0	null
SUZ12	ENCODE Transcription Factor Targets	1.0	null
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.917543
cdk6	GeneRIF Biological Term Annotations	1.0	null
caused	GeneRIF Biological Term Annotations	1.0	null
MDAMB468	CCLE Cell Line Gene CNV Profiles	1.0	1.82114
sirt1	GeneRIF Biological Term Annotations	1.0	null
pelp1	GeneRIF Biological Term Annotations	1.0	null
HDAC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KDM5B_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CEBPD	ENCODE Transcription Factor Targets	1.0	null
classic	GeneRIF Biological Term Annotations	1.0	null
19895320-Table2	GeneSigDB Published Gene Signatures	1.0	null
specimens	GeneRIF Biological Term Annotations	1.0	null
YY1_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
thereby	GeneRIF Biological Term Annotations	1.0	null
possible	GeneRIF Biological Term Annotations	1.0	null
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.877346
TP63-22573176-HFKS-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
positive	GeneRIF Biological Term Annotations	1.0	null
wntbetacatenin	GeneRIF Biological Term Annotations	1.0	null
mir200ab	GeneRIF Biological Term Annotations	1.0	null
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13767
MAX_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gna13	GeneRIF Biological Term Annotations	1.0	null
YY1	ENCODE Transcription Factor Targets	1.0	null
mir200regulated	GeneRIF Biological Term Annotations	1.0	null
upregulated	GeneRIF Biological Term Annotations	1.0	null
CTCF_thymus_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
metastatic	GeneRIF Biological Term Annotations	1.0	null
cd8	GeneRIF Biological Term Annotations	1.0	null
CEBPB	ENCODE Transcription Factor Targets	1.0	null
level	GeneRIF Biological Term Annotations	1.0	null
promoted	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_keratinocyte_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cd4	GeneRIF Biological Term Annotations	1.0	null
QGP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.862631
breast	GeneRIF Biological Term Annotations	1.0	null
POLR2A_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
tissue	GeneRIF Biological Term Annotations	1.0	null
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.85337
mir200b	GeneRIF Biological Term Annotations	1.0	null
betatubulin	GeneRIF Biological Term Annotations	1.0	null
dlc1	GeneRIF Biological Term Annotations	1.0	null
ikappabalpha	GeneRIF Biological Term Annotations	1.0	null
DMS 454	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.9123
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16642
KYSE270	CCLE Cell Line Gene CNV Profiles	1.0	1.39054
H3K27me3_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nsclc	GeneRIF Biological Term Annotations	1.0	null
eGFP-NR4A1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
characterization	GeneRIF Biological Term Annotations	1.0	null
mir9	GeneRIF Biological Term Annotations	1.0	null
significant	GeneRIF Biological Term Annotations	1.0	null
NCIH209	CCLE Cell Line Gene CNV Profiles	-1.0	-1.93369
SBC5	CCLE Cell Line Gene CNV Profiles	1.0	1.45819
769-P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49285
ability	GeneRIF Biological Term Annotations	1.0	null
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07491
controlling	GeneRIF Biological Term Annotations	1.0	null
confirmation	GeneRIF Biological Term Annotations	1.0	null
fully	GeneRIF Biological Term Annotations	1.0	null
NB1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4238
hepatocellular	GeneRIF Biological Term Annotations	1.0	null
region	GeneRIF Biological Term Annotations	1.0	null
mammalian	GeneRIF Biological Term Annotations	1.0	null
yap1	GeneRIF Biological Term Annotations	1.0	null
recurrence	GeneRIF Biological Term Annotations	1.0	null
HN	CCLE Cell Line Gene CNV Profiles	1.0	1.56077
H3K4me3_kidney epithelial cell_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_CH12.LX_mm9_4	ENCODE Histone Modification Site Profiles	1.0	null
process	GeneRIF Biological Term Annotations	1.0	null
Cell Transformation, Neoplastic	CTD Gene-Disease Associations	1.0	1.02262
H3K4me1_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
coordinated	GeneRIF Biological Term Annotations	1.0	null