association	dataset	threshold value	standardized value
taken	GeneRIF Biological Term Annotations	1.0	null
MDAMB436	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40492
circulating	GeneRIF Biological Term Annotations	1.0	null
Adenocarcinoma	CTD Gene-Disease Associations	1.0	1.30788
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05228
estrogendependent	GeneRIF Biological Term Annotations	1.0	null
muscle	GeneRIF Biological Term Annotations	1.0	null
mice	GeneRIF Biological Term Annotations	1.0	null
CL11	CCLE Cell Line Gene CNV Profiles	-1.0	-2.46583
NCIN87	CCLE Cell Line Gene CNV Profiles	-1.0	-2.34487
MDA-MB-231	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18753
MYOD1_myocyte_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37989
NCIH2286	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69978
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1804
eralphapositive	GeneRIF Biological Term Annotations	1.0	null
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1129
Fetal Growth Retardation	CTD Gene-Disease Associations	1.0	1.01739
notch3	GeneRIF Biological Term Annotations	1.0	null
NCI-H727	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.944047
hdac4	GeneRIF Biological Term Annotations	1.0	null
MAX_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2621
dysplasia	GeneRIF Biological Term Annotations	1.0	null
20068076-SuppTable4	GeneSigDB Published Gene Signatures	1.0	null
CAOV3	CCLE Cell Line Gene CNV Profiles	1.0	1.53955
oppositely	GeneRIF Biological Term Annotations	1.0	null
COLO201	CCLE Cell Line Gene CNV Profiles	1.0	1.56029
MAX	ENCODE Transcription Factor Targets	1.0	null
TCF3	ENCODE Transcription Factor Targets	1.0	null
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
SUDHL6	CCLE Cell Line Gene CNV Profiles	1.0	1.65983
gastric	GeneRIF Biological Term Annotations	1.0	null
lines	GeneRIF Biological Term Annotations	1.0	null
abnormal motor nerve collateral sprouting	MGI Mouse Phenotype Associations 2023	1.0	null
NCI-H2110	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.883705
abnormal neuron physiology	MPO Gene-Phenotype Associations	1.0	null
POLR2A_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
eec	GeneRIF Biological Term Annotations	1.0	null
mir18a	GeneRIF Biological Term Annotations	1.0	null
HCC2270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.98936
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.14209
lymph	GeneRIF Biological Term Annotations	1.0	null
endometrioid	GeneRIF Biological Term Annotations	1.0	null
AP-2rep	MotifMap Predicted Transcription Factor Targets	1.0	null
MAX_C2C12_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
estrogenic	GeneRIF Biological Term Annotations	1.0	null
migration	GeneRIF Biological Term Annotations	1.0	null
hepatocellular	GeneRIF Biological Term Annotations	1.0	null
than	GeneRIF Biological Term Annotations	1.0	null
Myocardial Reperfusion Injury	CTD Gene-Disease Associations	1.0	2.88009
Seizures	CTD Gene-Disease Associations	1.0	1.07911
COLO 205	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52155
neuroblastoma	GeneRIF Biological Term Annotations	1.0	null
E2A	MotifMap Predicted Transcription Factor Targets	1.0	null
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.61739
mirnadependent	GeneRIF Biological Term Annotations	1.0	null
reporter	GeneRIF Biological Term Annotations	1.0	null
evi1	GeneRIF Biological Term Annotations	1.0	null
surfactant	GeneRIF Biological Term Annotations	1.0	null
suppressed	GeneRIF Biological Term Annotations	1.0	null
NTERA-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.927541
mammalian phenotype	MPO Gene-Phenotype Associations	1.0	null
smooth	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
JJN3	CCLE Cell Line Gene CNV Profiles	1.0	2.55037
loss	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_brain_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
macroglobulinemia	GeneRIF Biological Term Annotations	1.0	null
Hypertrophy	CTD Gene-Disease Associations	1.0	1.173
focus	GeneRIF Biological Term Annotations	1.0	null
well	GeneRIF Biological Term Annotations	1.0	null
hepatocytes	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir21	GeneRIF Biological Term Annotations	1.0	null
musclespecific	GeneRIF Biological Term Annotations	1.0	null
COLO 206F	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.14478
measure	GeneRIF Biological Term Annotations	1.0	null
Myf	MotifMap Predicted Transcription Factor Targets	1.0	null
average	GeneRIF Biological Term Annotations	1.0	null
suppressive	GeneRIF Biological Term Annotations	1.0	null
mcf7	GeneRIF Biological Term Annotations	1.0	null
stabilizes	GeneRIF Biological Term Annotations	1.0	null
clusters	GeneRIF Biological Term Annotations	1.0	null
abnormal collateral sprouting	MPO Gene-Phenotype Associations	1.0	null
mir20621	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
isolated	GeneRIF Biological Term Annotations	1.0	null
KYSE-70	COSMIC Cell Line Gene CNV Profiles	1.0	2.59653
confirmed	GeneRIF Biological Term Annotations	1.0	null
lateral	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
RH41	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40857
myogenesis	GeneRIF Biological Term Annotations	1.0	null
promoting	GeneRIF Biological Term Annotations	1.0	null
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.58934
H2AFZ_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
inhibits	GeneRIF Biological Term Annotations	1.0	null
NCI-H2172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57171
apoptosis	GeneRIF Biological Term Annotations	1.0	null
regards	GeneRIF Biological Term Annotations	1.0	null
HCC4011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11046
SK-MES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11388
MYOD1_myocyte_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Cardiovascular Diseases	CTD Gene-Disease Associations	1.0	1.169
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.22303
aberrantly	GeneRIF Biological Term Annotations	1.0	null
otx2	GeneRIF Biological Term Annotations	1.0	null
resulting	GeneRIF Biological Term Annotations	1.0	null
PU.1	MotifMap Predicted Transcription Factor Targets	1.0	null
threshold	GeneRIF Biological Term Annotations	1.0	null
PSN1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14488
overexpression	GeneRIF Biological Term Annotations	1.0	null
NCIH1573	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52762
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1129
miRs in Muscle Cell Differentiation(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
specific	GeneRIF Biological Term Annotations	1.0	null
region	GeneRIF Biological Term Annotations	1.0	null
MDST8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50021
COLO792	CCLE Cell Line Gene CNV Profiles	-1.0	-1.97452
tumors	GeneRIF Biological Term Annotations	1.0	null
correlated	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2621
PK1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6031
endocrine	GeneRIF Biological Term Annotations	1.0	null
OVKATE	CCLE Cell Line Gene CNV Profiles	-1.0	-2.24327
mir193b	GeneRIF Biological Term Annotations	1.0	null
locus	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_bronchial epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.871686
tumour	GeneRIF Biological Term Annotations	1.0	null
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33643
LRF	MotifMap Predicted Transcription Factor Targets	1.0	null
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
HCC461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27182
abnormal nervous system physiology	MPO Gene-Phenotype Associations	1.0	null
nodes	GeneRIF Biological Term Annotations	1.0	null
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949514
KCI-MOH1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.98936
duchenne	GeneRIF Biological Term Annotations	1.0	null
within	GeneRIF Biological Term Annotations	1.0	null
HCC38	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37964
H3K27me3_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ofthe	GeneRIF Biological Term Annotations	1.0	null
feedback	GeneRIF Biological Term Annotations	1.0	null
COLO 792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.86597
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
proposed	GeneRIF Biological Term Annotations	1.0	null
myogenic	GeneRIF Biological Term Annotations	1.0	null
ovarian cancer	GAD Gene-Disease Associations	1.0	null
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	1.46883
th17	GeneRIF Biological Term Annotations	1.0	null
IMR-32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.954047
Pre-NOTCH Transcription and Translation	Reactome Pathways 2014	1.0	null
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
showed	GeneRIF Biological Term Annotations	1.0	null
activates	GeneRIF Biological Term Annotations	1.0	null
type	GeneRIF Biological Term Annotations	1.0	null
A-431	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26435
OKAJIMA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01095
Pre-NOTCH Expression and Processing	Reactome Pathways 2014	1.0	null
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07576
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.927541
antisensemediated	GeneRIF Biological Term Annotations	1.0	null
knockdown	GeneRIF Biological Term Annotations	1.0	null
using	GeneRIF Biological Term Annotations	1.0	null
A549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1129
H4K20me1_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
clinical	GeneRIF Biological Term Annotations	1.0	null
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
significance	GeneRIF Biological Term Annotations	1.0	null
genetogene	GeneRIF Biological Term Annotations	1.0	null
mirnas	GeneRIF Biological Term Annotations	1.0	null
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62889
Breast Neoplasms	CTD Gene-Disease Associations	1.0	2.88009
TUHR14TKB	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68296
luminala	GeneRIF Biological Term Annotations	1.0	null
NCIH2172	CCLE Cell Line Gene CNV Profiles	1.0	1.64425
embryonal	GeneRIF Biological Term Annotations	1.0	null
biomarker	GeneRIF Biological Term Annotations	1.0	null
mir133b	GeneRIF Biological Term Annotations	1.0	null
abrogation	GeneRIF Biological Term Annotations	1.0	null
ES-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.831957
Hyperplasia	CTD Gene-Disease Associations	1.0	1.01361
polymorphism	GeneRIF Biological Term Annotations	1.0	null
U937	CCLE Cell Line Gene CNV Profiles	1.0	1.41314
targets	GeneRIF Biological Term Annotations	1.0	null
19895320-Table1	GeneSigDB Published Gene Signatures	1.0	null
HCC1576	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.59872
SCC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07576
mir133a	GeneRIF Biological Term Annotations	1.0	null
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.55106
egfrmediated	GeneRIF Biological Term Annotations	1.0	null
evidence	GeneRIF Biological Term Annotations	1.0	null
multiple	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
EM2	CCLE Cell Line Gene CNV Profiles	1.0	1.59674
Prenatal Exposure Delayed Effects	CTD Gene-Disease Associations	1.0	1.60501
cmet	GeneRIF Biological Term Annotations	1.0	null
landmark	GeneRIF Biological Term Annotations	1.0	null
hsamir206	GeneRIF Biological Term Annotations	1.0	null
lipogenesis	GeneRIF Biological Term Annotations	1.0	null
HUG1N	CCLE Cell Line Gene CNV Profiles	1.0	1.57139
H3K27me3_cardiac mesoderm_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nucleotide	GeneRIF Biological Term Annotations	1.0	null
been	GeneRIF Biological Term Annotations	1.0	null
extended	GeneRIF Biological Term Annotations	1.0	null
rasa1	GeneRIF Biological Term Annotations	1.0	null
downregulation	GeneRIF Biological Term Annotations	1.0	null
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.95324
candidate	GeneRIF Biological Term Annotations	1.0	null
biomarkers	GeneRIF Biological Term Annotations	1.0	null
COLO205	CCLE Cell Line Gene CNV Profiles	1.0	2.00087
HCC4006	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.70532
HT1197	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52194
augmented	GeneRIF Biological Term Annotations	1.0	null
mir302c	GeneRIF Biological Term Annotations	1.0	null
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
H3K4me1_iPS DF 6.9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
aberrant	GeneRIF Biological Term Annotations	1.0	null
translation	GeneRIF Biological Term Annotations	1.0	null
NCIH1793	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57124
Hypertension	CTD Gene-Disease Associations	1.0	1.27255
marker	GeneRIF Biological Term Annotations	1.0	null
15284443-Table5	GeneSigDB Published Gene Signatures	1.0	null
HCC1319	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.99037
assays	GeneRIF Biological Term Annotations	1.0	null
cycle	GeneRIF Biological Term Annotations	1.0	null
cmetoverexpressing	GeneRIF Biological Term Annotations	1.0	null
POLR2A_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cyclin	GeneRIF Biological Term Annotations	1.0	null
HCC4006	CCLE Cell Line Gene CNV Profiles	-1.0	-1.84205
suppressor	GeneRIF Biological Term Annotations	1.0	null
invasion	GeneRIF Biological Term Annotations	1.0	null
SOX4	MotifMap Predicted Transcription Factor Targets	1.0	null
melanoma	GeneRIF Biological Term Annotations	1.0	null
coordinately	GeneRIF Biological Term Annotations	1.0	null
nrf2	GeneRIF Biological Term Annotations	1.0	null
responses	GeneRIF Biological Term Annotations	1.0	null
frequency	GeneRIF Biological Term Annotations	1.0	null
least	GeneRIF Biological Term Annotations	1.0	null
MYC	ENCODE Transcription Factor Targets	1.0	null
risk	GeneRIF Biological Term Annotations	1.0	null
stages	GeneRIF Biological Term Annotations	1.0	null
muscular	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HS 940.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0128
KYSE-520	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.98936
inhibiting	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_Colonic Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
treatment	GeneRIF Biological Term Annotations	1.0	null
together	GeneRIF Biological Term Annotations	1.0	null
metastasis	GeneRIF Biological Term Annotations	1.0	null
observed	GeneRIF Biological Term Annotations	1.0	null
Hepatitis	CTD Gene-Disease Associations	1.0	1.03901
ovarian	GeneRIF Biological Term Annotations	1.0	null
miR-targeted genes in epithelium - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
FXR	MotifMap Predicted Transcription Factor Targets	1.0	null
suppressors	GeneRIF Biological Term Annotations	1.0	null
NCI-H650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.865397
tnm	GeneRIF Biological Term Annotations	1.0	null
BATF_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BATF	ENCODE Transcription Factor Targets	1.0	null
dermatomyositis	GeneRIF Biological Term Annotations	1.0	null
COLO 201	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.96862
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31072
Weight Loss	CTD Gene-Disease Associations	1.0	1.17399
group	GeneRIF Biological Term Annotations	1.0	null
Glial Cell Differentiation(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
NCI-H661	COSMIC Cell Line Gene CNV Profiles	1.0	2.59653
phenotypic	GeneRIF Biological Term Annotations	1.0	null
STAT4	MotifMap Predicted Transcription Factor Targets	1.0	null
POLR2AphosphoS2_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
histone	GeneRIF Biological Term Annotations	1.0	null
attenuated	GeneRIF Biological Term Annotations	1.0	null
MYOD1	ENCODE Transcription Factor Targets	1.0	null
mir206mir133b	GeneRIF Biological Term Annotations	1.0	null
SNU-668	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.882748
MG-63	COSMIC Cell Line Gene CNV Profiles	1.0	2.59653
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.882748
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05228
antimir	GeneRIF Biological Term Annotations	1.0	null
Nerve Degeneration	CTD Gene-Disease Associations	1.0	1.23488
H3K36me3_Skeletal Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
rs6774494	GeneRIF Biological Term Annotations	1.0	null
Proteinuria	CTD Gene-Disease Associations	1.0	1.12634
H3K27ac_embryonic fibroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
bdnf	GeneRIF Biological Term Annotations	1.0	null
ccnd2	GeneRIF Biological Term Annotations	1.0	null
targeting	GeneRIF Biological Term Annotations	1.0	null
HSC3	CCLE Cell Line Gene CNV Profiles	1.0	2.24975
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26796
H3K27me3_kidney epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
hepg2	GeneRIF Biological Term Annotations	1.0	null
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
possibility	GeneRIF Biological Term Annotations	1.0	null
partially	GeneRIF Biological Term Annotations	1.0	null
lxralpha	GeneRIF Biological Term Annotations	1.0	null
modulates	GeneRIF Biological Term Annotations	1.0	null
hmgb3	GeneRIF Biological Term Annotations	1.0	null
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11046
KYSE-70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2732
especially	GeneRIF Biological Term Annotations	1.0	null
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1129
schizophrenia	GAD Gene-Disease Associations	1.0	null
cdk4	GeneRIF Biological Term Annotations	1.0	null
Infertility, Male	CTD Gene-Disease Associations	1.0	1.32339
EWS-ERG-20517297-CADO-ES1-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
waldenstrom	GeneRIF Biological Term Annotations	1.0	null
support	GeneRIF Biological Term Annotations	1.0	null
inhibit	GeneRIF Biological Term Annotations	1.0	null
OCI-LY-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07576
Necrosis	CTD Gene-Disease Associations	1.0	1.19704
TCF12_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
breast	GeneRIF Biological Term Annotations	1.0	null
Atherosclerosis	CTD Gene-Disease Associations	1.0	1.04088
EWSR1	ChEA Transcription Factor Targets	1.0	null
switch	GeneRIF Biological Term Annotations	1.0	null
proliferation	GeneRIF Biological Term Annotations	1.0	null
LTF	MotifMap Predicted Transcription Factor Targets	1.0	null
20406893-Table1a	GeneSigDB Published Gene Signatures	1.0	null
A-375	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05228
bdi	GeneRIF Biological Term Annotations	1.0	null
CAMA1	CCLE Cell Line Gene CNV Profiles	1.0	1.34581
HCC366	CCLE Cell Line Gene CNV Profiles	1.0	2.30294
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05228
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33492
microrna	GeneRIF Biological Term Annotations	1.0	null
mir1mir133a	GeneRIF Biological Term Annotations	1.0	null
mir18b	GeneRIF Biological Term Annotations	1.0	null
uggest	GeneRIF Biological Term Annotations	1.0	null
KDM5A	ENCODE Transcription Factor Targets	1.0	null
suppress	GeneRIF Biological Term Annotations	1.0	null
alzheimer	GeneRIF Biological Term Annotations	1.0	null
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.36756
H3K4me1_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Glioblastoma	CTD Gene-Disease Associations	1.0	1.15425
basallike	GeneRIF Biological Term Annotations	1.0	null
Schizophrenia	HuGE Navigator Gene-Phenotype Associations	1.0	null
TCF3_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MYC_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
change	GeneRIF Biological Term Annotations	1.0	null
differentiation	GeneRIF Biological Term Annotations	1.0	null
NCIH661	CCLE Cell Line Gene CNV Profiles	1.0	1.83085
MYOD1_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1897	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76294
strengthens	GeneRIF Biological Term Annotations	1.0	null
pathogenesis	GeneRIF Biological Term Annotations	1.0	null
osteosarcoma	GeneRIF Biological Term Annotations	1.0	null
compared	GeneRIF Biological Term Annotations	1.0	null
phenotypes	GeneRIF Biological Term Annotations	1.0	null
blocks	GeneRIF Biological Term Annotations	1.0	null
GR-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05228
availability	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
initial	GeneRIF Biological Term Annotations	1.0	null
eralpha	GeneRIF Biological Term Annotations	1.0	null
CAMA-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04514
mood	GeneRIF Biological Term Annotations	1.0	null
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
MYOG_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nervous system phenotype	MPO Gene-Phenotype Associations	1.0	null
H3K4me2_myocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
targeted	GeneRIF Biological Term Annotations	1.0	null
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1129
partly	GeneRIF Biological Term Annotations	1.0	null
contributes	GeneRIF Biological Term Annotations	1.0	null
amyotrophic	GeneRIF Biological Term Annotations	1.0	null
TCF12	ENCODE Transcription Factor Targets	1.0	null
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.939479
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14964
Neurotoxicity Syndromes	CTD Gene-Disease Associations	1.0	1.20097
rhabdomyosarcoma	GeneRIF Biological Term Annotations	1.0	null
spred1	GeneRIF Biological Term Annotations	1.0	null
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07576
prognostic	GeneRIF Biological Term Annotations	1.0	null
NCIH510	CCLE Cell Line Gene CNV Profiles	1.0	1.86562
cancers	GeneRIF Biological Term Annotations	1.0	null
Signal Transduction	Reactome Pathways 2014	1.0	null
H3K27me3_Rectal Smooth Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
MYOG	ENCODE Transcription Factor Targets	1.0	null
inhibitory	GeneRIF Biological Term Annotations	1.0	null
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78357
provide	GeneRIF Biological Term Annotations	1.0	null
KMS-26	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1804
miR-targeted genes in muscle cell - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
coregulation	GeneRIF Biological Term Annotations	1.0	null
SUDHL8	CCLE Cell Line Gene CNV Profiles	1.0	1.39739
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
IGR39	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46289
higher	GeneRIF Biological Term Annotations	1.0	null
Learning Disorders	CTD Gene-Disease Associations	1.0	1.19146
affects	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_G1E-ER4_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
laryngeal	GeneRIF Biological Term Annotations	1.0	null
egfr	GeneRIF Biological Term Annotations	1.0	null
level	GeneRIF Biological Term Annotations	1.0	null
controls	GeneRIF Biological Term Annotations	1.0	null
low	GeneRIF Biological Term Annotations	1.0	null
micrornas	GeneRIF Biological Term Annotations	1.0	null
MEC2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47214
secretion	GeneRIF Biological Term Annotations	1.0	null
JJN-3	COSMIC Cell Line Gene CNV Profiles	1.0	2.59653
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.69327
20068076-SuppTable9c	GeneSigDB Published Gene Signatures	1.0	null
modulating	GeneRIF Biological Term Annotations	1.0	null
corresponding	GeneRIF Biological Term Annotations	1.0	null
single	GeneRIF Biological Term Annotations	1.0	null
A498	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51435
Neoplasms	CTD Gene-Disease Associations	1.0	1.05052
upregulation	GeneRIF Biological Term Annotations	1.0	null
U-937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50407
COLO-818	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.944047
TT	CCLE Cell Line Gene CNV Profiles	1.0	1.98444
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.45356
deacetylase	GeneRIF Biological Term Annotations	1.0	null
Bipolar Disorder	HuGE Navigator Gene-Phenotype Associations	1.0	null
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2732
cyclind2	GeneRIF Biological Term Annotations	1.0	null
alveolar	GeneRIF Biological Term Annotations	1.0	null
ML1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47163
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.59872
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41743
mir1	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.61991
PANC0327	CCLE Cell Line Gene CNV Profiles	1.0	1.51051
KYSE70	CCLE Cell Line Gene CNV Profiles	1.0	1.77191
stabilizers	GeneRIF Biological Term Annotations	1.0	null
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
myomir206	GeneRIF Biological Term Annotations	1.0	null
formation	GeneRIF Biological Term Annotations	1.0	null
fold	GeneRIF Biological Term Annotations	1.0	null
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05228
H3K27me3_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Prostatic Neoplasms	CTD Gene-Disease Associations	1.0	1.08019
MG63	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
observations	GeneRIF Biological Term Annotations	1.0	null
mir206	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
directly	GeneRIF Biological Term Annotations	1.0	null
promote	GeneRIF Biological Term Annotations	1.0	null
FUOV1	CCLE Cell Line Gene CNV Profiles	1.0	1.36303
contribute	GeneRIF Biological Term Annotations	1.0	null
describe	GeneRIF Biological Term Annotations	1.0	null
node	GeneRIF Biological Term Annotations	1.0	null
glioma	GeneRIF Biological Term Annotations	1.0	null
regulator	GeneRIF Biological Term Annotations	1.0	null
redoxsensitive	GeneRIF Biological Term Annotations	1.0	null
H3K9ac_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K27me3_cardiac mesoderm_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pulmonary	GeneRIF Biological Term Annotations	1.0	null
UM-UC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1129
oncogenic	GeneRIF Biological Term Annotations	1.0	null
fetal	GeneRIF Biological Term Annotations	1.0	null
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.882748
revealed	GeneRIF Biological Term Annotations	1.0	null
HSC-3	COSMIC Cell Line Gene CNV Profiles	1.0	2.59653
H3K4me1_embryonic fibroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
use	GeneRIF Biological Term Annotations	1.0	null
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11161
sclerosis	GeneRIF Biological Term Annotations	1.0	null
acetylation	GeneRIF Biological Term Annotations	1.0	null
adenocarcinoma	GeneRIF Biological Term Annotations	1.0	null
shown	GeneRIF Biological Term Annotations	1.0	null
Breast Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
dystrophy	GeneRIF Biological Term Annotations	1.0	null
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.952222
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1129
limiting	GeneRIF Biological Term Annotations	1.0	null
normal	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_kidney epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
serum	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.70062
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62827
COR-L26	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.957592
JHUEM3	CCLE Cell Line Gene CNV Profiles	1.0	1.66958
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18753
control	GeneRIF Biological Term Annotations	1.0	null
profile	GeneRIF Biological Term Annotations	1.0	null
STAT3	MotifMap Predicted Transcription Factor Targets	1.0	null
Heart Diseases	CTD Gene-Disease Associations	1.0	1.08619
major	GeneRIF Biological Term Annotations	1.0	null
COLO668	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48216
Liver Neoplasms, Experimental	CTD Gene-Disease Associations	1.0	2.88009
decreased	GeneRIF Biological Term Annotations	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
increases	GeneRIF Biological Term Annotations	1.0	null
NCI-H510A	COSMIC Cell Line Gene CNV Profiles	1.0	2.59653
vamp2	GeneRIF Biological Term Annotations	1.0	null
HCC2814	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43601
artery	GeneRIF Biological Term Annotations	1.0	null
many	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_H7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
il17af	GeneRIF Biological Term Annotations	1.0	null
therapy	GeneRIF Biological Term Annotations	1.0	null
raserk	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ECGI10	CCLE Cell Line Gene CNV Profiles	1.0	1.50598
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.61991
Prenatal Injuries	CTD Gene-Disease Associations	1.0	1.15899
skeletal	GeneRIF Biological Term Annotations	1.0	null
advanced	GeneRIF Biological Term Annotations	1.0	null
SNU-484	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07481
Anemia	CTD Gene-Disease Associations	1.0	1.29256
promising	GeneRIF Biological Term Annotations	1.0	null
MYOD1_C2C12_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Signaling by NOTCH	Reactome Pathways 2014	1.0	null
pax3	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
demonstrated	GeneRIF Biological Term Annotations	1.0	null
abnormal motor nerve collateral sprouting	MPO Gene-Phenotype Associations	1.0	null
mirna206	GeneRIF Biological Term Annotations	1.0	null
MYOG_myocyte_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
identify	GeneRIF Biological Term Annotations	1.0	null
SU-DHL-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92017
bronchopulmonary	GeneRIF Biological Term Annotations	1.0	null
only	GeneRIF Biological Term Annotations	1.0	null
mir1206	GeneRIF Biological Term Annotations	1.0	null
Ovarian Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
H3K9ac_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
further	GeneRIF Biological Term Annotations	1.0	null
hcc	GeneRIF Biological Term Annotations	1.0	null
potent	GeneRIF Biological Term Annotations	1.0	null
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.33498
HCC364	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00904
studies	GeneRIF Biological Term Annotations	1.0	null
Ovarian Neoplasms	CTD Gene-Disease Associations	1.0	1.04276
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.9829
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0437
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.890737
klf4mir206	GeneRIF Biological Term Annotations	1.0	null
VCAP	CCLE Cell Line Gene CNV Profiles	-1.0	-1.92003
H3K4me1_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
suppressing	GeneRIF Biological Term Annotations	1.0	null
lung	GeneRIF Biological Term Annotations	1.0	null
HEP G2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.85976
SNU46	CCLE Cell Line Gene CNV Profiles	1.0	1.39927
stage	GeneRIF Biological Term Annotations	1.0	null
Glucose Intolerance	CTD Gene-Disease Associations	1.0	1.03197
myotonic	GeneRIF Biological Term Annotations	1.0	null
raise	GeneRIF Biological Term Annotations	1.0	null
KURAMOCHI	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
KYSE150	CCLE Cell Line Gene CNV Profiles	1.0	1.48444
poor	GeneRIF Biological Term Annotations	1.0	null
mirna206133b	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_GM06990_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
different	GeneRIF Biological Term Annotations	1.0	null
CAPAN2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63124