association	dataset	threshold value	standardized value
cancer stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.292079
RBBP5	ENCODE Transcription Factor Targets	1.0	null
H2AFZ_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
suppressors	GeneRIF Biological Term Annotations	1.0	null
risk	GeneRIF Biological Term Annotations	1.0	null
HCC1263	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.914473
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054527
LXFL529	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.01781
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3782
namely	GeneRIF Biological Term Annotations	1.0	null
20068076-SuppTable4	GeneSigDB Published Gene Signatures	1.0	null
HDAC6	ENCODE Transcription Factor Targets	1.0	null
bone marrow stromal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.309697
A549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.71222
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.926619
spliceosomal complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.581758
urine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.225144
DMS153	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69179
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.90438
normal	GeneRIF Biological Term Annotations	1.0	null
tgfbetarii	GeneRIF Biological Term Annotations	1.0	null
EZH2_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NR2F2	ENCODE Transcription Factor Targets	1.0	null
FOSL2_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1869	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.73229
ribonucleoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.050288
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051363
eye and adnexa disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045566
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.902424
HCC1419	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51972
cervical carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.105895
JHOS2	CCLE Cell Line Gene CNV Profiles	1.0	2.11222
MYC	ENCODE Transcription Factor Targets	1.0	null
inhibitory	GeneRIF Biological Term Annotations	1.0	null
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3891
cervical epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.689226
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.986639
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.066
pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060026
H3K9me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MYC_MCF-7_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
stroke	GeneRIF Biological Term Annotations	1.0	null
acute	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_Adult Kidney	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K27me3_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOS_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.8415
KDM5A	ENCODE Transcription Factor Targets	1.0	null
act	GeneRIF Biological Term Annotations	1.0	null
melanoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.00196
SNU520	CCLE Cell Line Gene CNV Profiles	1.0	1.32861
vitreous humor	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.64529
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.8415
NCI-H1581	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1182
model	GeneRIF Biological Term Annotations	1.0	null
NCI-H2804	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.914473
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10089
NCI-H1770	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.47316
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.845631
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053151
CALU3	CCLE Cell Line Gene CNV Profiles	-1.0	-2.57676
CHD1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
NCI-H2452	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.8415
mir205	GeneRIF Biological Term Annotations	1.0	null
RFX5	ENCODE Transcription Factor Targets	1.0	null
systemic mycosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.160761
H2BK20ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
melanoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.882051
vas efferens	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.393064
maintaining	GeneRIF Biological Term Annotations	1.0	null
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.56453
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30156
GATA3_MCF-7_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MKN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04081
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06703
rpe	GeneRIF Biological Term Annotations	1.0	null
15284443-Table6	GeneSigDB Published Gene Signatures	1.0	null
apparent	GeneRIF Biological Term Annotations	1.0	null
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.958585
CEBPB_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NR2F2_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCA-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.84218
markers	GeneRIF Biological Term Annotations	1.0	null
SK23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.86417
FOS_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CEBPB_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
compared	GeneRIF Biological Term Annotations	1.0	null
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10089
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33827
LUDLU1	CCLE Cell Line Gene CNV Profiles	1.0	1.74293
barrier	GeneRIF Biological Term Annotations	1.0	null
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039764
TE9	CCLE Cell Line Gene CNV Profiles	1.0	1.44263
SOX10	MotifMap Predicted Transcription Factor Targets	1.0	null
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.914473
mir211	GeneRIF Biological Term Annotations	1.0	null
macular holes	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.754934
OVISE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.90438
key	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
angiopoietin1	GeneRIF Biological Term Annotations	1.0	null
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
UMUC1	CCLE Cell Line Gene CNV Profiles	1.0	3.27339
H3K27me3_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MCF10DCIS.COM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18787
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053243
STAT3	ENCODE Transcription Factor Targets	1.0	null
CTCF_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
vitreous chamber of the eye	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.631123
CTCF_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.90438
CTCF_WERI-Rb-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
brn2	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058571
Carcinoma, Non-Small-Cell Lung	HuGE Navigator Gene-Phenotype Associations	1.0	null
H3K4me3_fibroblast of skin of abdomen_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
CEBPB	ENCODE Transcription Factor Targets	1.0	null
NCIH647	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32338
HUH6	CCLE Cell Line Gene CNV Profiles	-1.0	-2.12822
H3K27me3_Breast vHMEC	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
dedifferentiated	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_CH12.LX_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOS_MCF 10A_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_H1 BMP4 Derived Mesendoderm Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CTCF_GM12868_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
contributes	GeneRIF Biological Term Annotations	1.0	null
host	GeneRIF Biological Term Annotations	1.0	null
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04081
CAPAN2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36171
H2AFZ_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055291
sense organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074527
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SKMEL30	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37444
hair follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.308974
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.293866
retinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.065679
EZH2_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
series	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2AFZ_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH1694	CCLE Cell Line Gene CNV Profiles	-1.0	-2.14798
JHESOAD1	CCLE Cell Line Gene CNV Profiles	1.0	2.18106
neck	GeneRIF Biological Term Annotations	1.0	null
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20078
skin cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.998473
H3K27me3_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.981688
PUR1	MotifMap Predicted Transcription Factor Targets	1.0	null
CTCF_A549_hg19_9	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TE4	CCLE Cell Line Gene CNV Profiles	1.0	1.73005
RT4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2113
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055013
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.585887
patient	GeneRIF Biological Term Annotations	1.0	null
HDAC2	ENCODE Transcription Factor Targets	1.0	null
DAUDI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.92329
diagnostic	GeneRIF Biological Term Annotations	1.0	null
samples	GeneRIF Biological Term Annotations	1.0	null
mitf	GeneRIF Biological Term Annotations	1.0	null
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054714
STAT3_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.851678
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.76077
MAX_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HDAC6_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
reduction	GeneRIF Biological Term Annotations	1.0	null
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.90438
HT1197	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45162
CTCF_H1-hESC_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.10552
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.861993
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040359
NCI-H2052	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.71222
COLO800	CCLE Cell Line Gene CNV Profiles	1.0	1.54218
nonoverlapping	GeneRIF Biological Term Annotations	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34623
internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058146
useful	GeneRIF Biological Term Annotations	1.0	null
retinal detachment	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.425139
MAX	ENCODE Transcription Factor Targets	1.0	null
CTCF_HEK293_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CBX3	ENCODE Transcription Factor Targets	1.0	null
chamber of the eye	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.5228
H3K4me3_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
H3K27me3_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.066
eye	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.093303
critical	GeneRIF Biological Term Annotations	1.0	null
TM31	CCLE Cell Line Gene CNV Profiles	1.0	1.73468
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.687491
CAL-120	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.926619
RKN	CCLE Cell Line Gene CNV Profiles	1.0	1.89753
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.986639
NCIH226	CCLE Cell Line Gene CNV Profiles	-1.0	-1.84615
MDAMB453	CCLE Cell Line Gene CNV Profiles	1.0	1.4758
NCIH211	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42407
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.293151
cervical cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.513743
pancreatic ductal adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.612401
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28469
HARA	CCLE Cell Line Gene CNV Profiles	1.0	2.03139
SU-DHL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49978
H2BK5ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
develop	GeneRIF Biological Term Annotations	1.0	null
HUH1	CCLE Cell Line Gene CNV Profiles	1.0	1.5234
H3K4me3_fibroblast of gingiva_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
glioma	GeneRIF Biological Term Annotations	1.0	null
generally	GeneRIF Biological Term Annotations	1.0	null
SNU1272	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54158
adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052184
knockdown	GeneRIF Biological Term Annotations	1.0	null
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15932
kcnma1	GeneRIF Biological Term Annotations	1.0	null
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06959
reduced	GeneRIF Biological Term Annotations	1.0	null
hair	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.110862
being	GeneRIF Biological Term Annotations	1.0	null
caused	GeneRIF Biological Term Annotations	1.0	null
CTCF_WI38_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_HepG2_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9me3_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
RFX5_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
brain cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.293334
therapies	GeneRIF Biological Term Annotations	1.0	null
Precancerous Conditions	CTD Gene-Disease Associations	1.0	2.88009
differentially	GeneRIF Biological Term Annotations	1.0	null
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.8415
cervical cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.508635
KASUMI1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.77248
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
H4K20me1_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ZNF217_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.840347
assumes	GeneRIF Biological Term Annotations	1.0	null
physiology	GeneRIF Biological Term Annotations	1.0	null
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.360395
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38985
chd5	GeneRIF Biological Term Annotations	1.0	null
sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044574
antihead	GeneRIF Biological Term Annotations	1.0	null
invasion	GeneRIF Biological Term Annotations	1.0	null
CTCF_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HH	CCLE Cell Line Gene CNV Profiles	-1.0	-1.97406
H3K4me3_fibroblast of gingiva_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mediated	GeneRIF Biological Term Annotations	1.0	null
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOSL2	ENCODE Transcription Factor Targets	1.0	null
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH2286	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42267
NCIH889	CCLE Cell Line Gene CNV Profiles	-1.0	-2.91076
tumorigenesis	GeneRIF Biological Term Annotations	1.0	null
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16025
NCI-H2810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22669
CPCN	CCLE Cell Line Gene CNV Profiles	1.0	1.50622
COLO818	CCLE Cell Line Gene CNV Profiles	1.0	1.36254
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.90438
A549	CCLE Cell Line Gene CNV Profiles	1.0	1.41458
pancreatic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.22145
KNS60	CCLE Cell Line Gene CNV Profiles	1.0	1.78351
most	GeneRIF Biological Term Annotations	1.0	null
Hepatomegaly	CTD Gene-Disease Associations	1.0	1.24338
HCC202	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.846563
STAT1_01_21	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	0.8875
mirnas	GeneRIF Biological Term Annotations	1.0	null
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.590437
dexamethasone_homo sapiens_gpl6244_gse20963	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
mir200c	GeneRIF Biological Term Annotations	1.0	null
oral	GeneRIF Biological Term Annotations	1.0	null
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.04179
adhesion	GeneRIF Biological Term Annotations	1.0	null
candidiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.357077
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.827819
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040695
dedifferentiation	GeneRIF Biological Term Annotations	1.0	null
squamous	GeneRIF Biological Term Annotations	1.0	null
FOS	ENCODE Transcription Factor Targets	1.0	null
CTCF_K562_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NR2F2_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053047
HCC2935	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.852836
uterus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.094375
saliva	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.216126
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962922
STAT4	MotifMap Predicted Transcription Factor Targets	1.0	null
CTCF_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.914473
CEBPB_myocyte_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
should	GeneRIF Biological Term Annotations	1.0	null
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
A-427	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10089
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05219
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04177
UM-UC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.71222
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.4576
three	GeneRIF Biological Term Annotations	1.0	null
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.846563
endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.094262
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056018
RKN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11309
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.914473
hfrpe	GeneRIF Biological Term Annotations	1.0	null
direct	GeneRIF Biological Term Annotations	1.0	null
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052658
opportunistic mycosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.183541
reduce	GeneRIF Biological Term Annotations	1.0	null
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053536
MC116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.79459
NCIH1581	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41437
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25344
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046486
OVTOKO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43771
GATA3_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
uterine cervix	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.147353
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10089
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043346
T98G	CCLE Cell Line Gene CNV Profiles	1.0	2.53992
NCI-H2135	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.74622
NCIH1869	CCLE Cell Line Gene CNV Profiles	-1.0	-1.62099
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962922
KP4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962922
RMUGS	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49305
provide	GeneRIF Biological Term Annotations	1.0	null
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040271
SK-N-FI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49978
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.48247
H3K27me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KHM-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.895539
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H4K20me1_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051727
EP300	ENCODE Transcription Factor Targets	1.0	null
Neoplasms	CTD Gene-Disease Associations	1.0	1.12219
CTCF_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059599
stromal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.127637
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040531
malignant glioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.185612
decreased	GeneRIF Biological Term Annotations	1.0	null
CBX3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10089
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.8415
EZH2_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
prognostic	GeneRIF Biological Term Annotations	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.459145
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04093
mir211regulated	GeneRIF Biological Term Annotations	1.0	null
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06703
GATA3_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU761	CCLE Cell Line Gene CNV Profiles	1.0	1.50651
POLR2A	ENCODE Transcription Factor Targets	1.0	null
ATM_KD_GSE54268_662_human_MCF-10A	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39351
COLO679	CCLE Cell Line Gene CNV Profiles	-1.0	-2.02248
SIN3A	ENCODE Transcription Factor Targets	1.0	null
H3K27me3_G1E_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05063
HCC1428	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4764
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041018
differentiation	GeneRIF Biological Term Annotations	1.0	null
lines	GeneRIF Biological Term Annotations	1.0	null
EP300_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056791
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962922
SW1088	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44701
exocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05863
SNU-182	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.914473
CHD1	ENCODE Transcription Factor Targets	1.0	null
COLO 794	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.56872
SKNFI	CCLE Cell Line Gene CNV Profiles	1.0	1.56439
fungal infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.072133
central nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044541
CTCF_GM06990_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2AFZ_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CALU-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.82397
SIN3A_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
salivary gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073639
H3K27me3_kidney epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057978
pancreatic carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.420266
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064809
pancreatic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.259254
FOS_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4961
directly	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_cardiac mesoderm_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KASUMI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.88339
H3K4me1_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
revealed	GeneRIF Biological Term Annotations	1.0	null
RUNX2-22187159-PCA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
537 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62959
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
HNF4	MotifMap Predicted Transcription Factor Targets	1.0	null
melanoma	GeneRIF Biological Term Annotations	1.0	null
effect	GeneRIF Biological Term Annotations	1.0	null
epithelial	GeneRIF Biological Term Annotations	1.0	null
mir204211	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
help	GeneRIF Biological Term Annotations	1.0	null
MYC_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LOVO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34623
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.80953
SLR26	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39065
colorectal	GeneRIF Biological Term Annotations	1.0	null
CTCF_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.01781
nuak1	GeneRIF Biological Term Annotations	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.454512
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051977
EZH2_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
migration	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
outcomes	GeneRIF Biological Term Annotations	1.0	null
EKVX	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4961
HDAC2_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
shown	GeneRIF Biological Term Annotations	1.0	null
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.90438
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20194
RUNX2	ChEA Transcription Factor Targets	1.0	null
LMO2-20887958-HPC-7-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13231
SK-MEL-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10015
melanocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.48317
H3K9ac_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ZNF217	ENCODE Transcription Factor Targets	1.0	null
GATA3	ENCODE Transcription Factor Targets	1.0	null
cmyc	GeneRIF Biological Term Annotations	1.0	null
evidence	GeneRIF Biological Term Annotations	1.0	null
NCIH660	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76746
pancreas adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.484364
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053266
Lung Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28659
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.79739
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43771
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
COLO 205	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.914473
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.693098
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28469
suppression	GeneRIF Biological Term Annotations	1.0	null
downregulated	GeneRIF Biological Term Annotations	1.0	null
mmp9	GeneRIF Biological Term Annotations	1.0	null
authors	GeneRIF Biological Term Annotations	1.0	null
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.961996
targeting	GeneRIF Biological Term Annotations	1.0	null
regulator	GeneRIF Biological Term Annotations	1.0	null
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06703
MYC_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042327
posttranscriptional	GeneRIF Biological Term Annotations	1.0	null
DAUDI	CCLE Cell Line Gene CNV Profiles	-1.0	-2.24193
PA-TU-8988T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962922
HCC1897	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38796
rs2507800	GeneRIF Biological Term Annotations	1.0	null
kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054164
LMO2	ChEA Transcription Factor Targets	1.0	null
poor	GeneRIF Biological Term Annotations	1.0	null
interfering	GeneRIF Biological Term Annotations	1.0	null
EZH2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
genotype	GeneRIF Biological Term Annotations	1.0	null
SNU1214	CCLE Cell Line Gene CNV Profiles	1.0	1.81419
melanocytes	GeneRIF Biological Term Annotations	1.0	null
tumour	GeneRIF Biological Term Annotations	1.0	null
intronic	GeneRIF Biological Term Annotations	1.0	null
all	GeneRIF Biological Term Annotations	1.0	null
epidermal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.10004
confirming	GeneRIF Biological Term Annotations	1.0	null
melanoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.16781
nuclear part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04298
COLO680N	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43275
reported	GeneRIF Biological Term Annotations	1.0	null
suppressive	GeneRIF Biological Term Annotations	1.0	null
EBC1	CCLE Cell Line Gene CNV Profiles	1.0	2.30599
demonstrate	GeneRIF Biological Term Annotations	1.0	null