association	dataset	threshold value	standardized value
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.881642
Esophageal Squamous Cell Carcinoma	CTD Gene-Disease Associations	1.0	2.88009
arteriosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.158434
nephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.061257
G-402	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32902
LNCAP	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.19106
leiomyoma	GeneRIF Biological Term Annotations	1.0	null
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.21696
blood vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080257
podocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.219264
hcmv	GeneRIF Biological Term Annotations	1.0	null
SNU324	CCLE Cell Line Gene CNV Profiles	-1.0	-2.21017
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27376
mir217	GeneRIF Biological Term Annotations	1.0	null
endogenous	GeneRIF Biological Term Annotations	1.0	null
pancreatic duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.335233
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05918
MDAMB157	CCLE Cell Line Gene CNV Profiles	1.0	2.29495
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.328628
regulate	GeneRIF Biological Term Annotations	1.0	null
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26724
ovarian	GeneRIF Biological Term Annotations	1.0	null
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.329361
mesoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065053
cytoplasmic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043744
able	GeneRIF Biological Term Annotations	1.0	null
KMH2	CCLE Cell Line Gene CNV Profiles	1.0	1.63571
colonic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063206
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.71644
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041237
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	2.88009
resistance	GeneRIF Biological Term Annotations	1.0	null
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04825
colorectal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071159
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.828449
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44203
gastrointestinal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061166
EVSAT	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67976
induces	GeneRIF Biological Term Annotations	1.0	null
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2098
KMS-21BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.86699
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83872
pancreas adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.05051
BICR56	CCLE Cell Line Gene CNV Profiles	-1.0	-2.48356
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.894841
kidney cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.111625
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04825
leiomyoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.286519
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30803
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.923594
acquire	GeneRIF Biological Term Annotations	1.0	null
vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047624
mirs	GeneRIF Biological Term Annotations	1.0	null
HT	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.21491
endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.2559
HCC2935	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46573
small intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.532701
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.923594
mir217foxo3a	GeneRIF Biological Term Annotations	1.0	null
SK-N-DZ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.904468
HCC1171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.938946
SNU-182	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.97013
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.258243
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.392309
organ system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051833
SKNDZ	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49748
HS 746T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2492
OKAJIMA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37417
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042486
CHK2_KD_GSE54268_667_human_MCF-10A	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
MDA-MB-231	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2098
carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.379256
promotes	GeneRIF Biological Term Annotations	1.0	null
help	GeneRIF Biological Term Annotations	1.0	null
endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.313683
15284443-Table6	GeneSigDB Published Gene Signatures	1.0	null
PA-TU-8902	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83872
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.177576
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01467
ductal	GeneRIF Biological Term Annotations	1.0	null
BC3C	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73178
M059K	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28577
pancreatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.731381
SNU449	CCLE Cell Line Gene CNV Profiles	-1.0	-2.06247
20068076-SuppTable4	GeneSigDB Published Gene Signatures	1.0	null
colonic cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064519
endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.839296
duodenum adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.0265
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83872
sw-480 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.33965
hepatocytes	GeneRIF Biological Term Annotations	1.0	null
pancreas disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.469954
glomerular epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.190486
artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053523
vegfr2	GeneRIF Biological Term Annotations	1.0	null
T47D	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39504
candidate	GeneRIF Biological Term Annotations	1.0	null
pdac	GeneRIF Biological Term Annotations	1.0	null
kidney cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.174623
EW8	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57661
membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046986
DLD-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.77585
CEBPB	ENCODE Transcription Factor Targets	1.0	null
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.241132
EFO21	CCLE Cell Line Gene CNV Profiles	1.0	1.56217
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.292079
colorectal adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.077251
pancreatic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.952438
OVMANA	CCLE Cell Line Gene CNV Profiles	1.0	1.88851
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27376
lung small cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.42664
HCC2218	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.964865
strategies	GeneRIF Biological Term Annotations	1.0	null
urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043239
mir217e2f3	GeneRIF Biological Term Annotations	1.0	null
specific	GeneRIF Biological Term Annotations	1.0	null
clathrin coat	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.470406
TCCSUP	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43568
chemoresistance	GeneRIF Biological Term Annotations	1.0	null
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050808
coronary artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.172286
heart	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.263327
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.299242
Lyf-1	MotifMap Predicted Transcription Factor Targets	1.0	null
mirnas	GeneRIF Biological Term Annotations	1.0	null
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83872
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83872
HCC1500	CCLE Cell Line Gene CNV Profiles	-1.0	-1.92233
female reproductive organ benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.406051
coated membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.42082
osteosarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.323144
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26902
fat	GeneRIF Biological Term Annotations	1.0	null
colonic adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.08456
predict	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.449501
647V	CCLE Cell Line Gene CNV Profiles	1.0	1.5762
mir484	GeneRIF Biological Term Annotations	1.0	null
U-698-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.54377
information	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.867924
skeletal muscle cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063231
vegfb	GeneRIF Biological Term Annotations	1.0	null
colorectal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071772
NCIH2342	CCLE Cell Line Gene CNV Profiles	1.0	1.58095
regulator	GeneRIF Biological Term Annotations	1.0	null
prognostic	GeneRIF Biological Term Annotations	1.0	null
previously	GeneRIF Biological Term Annotations	1.0	null
mir363	GeneRIF Biological Term Annotations	1.0	null
mir21	GeneRIF Biological Term Annotations	1.0	null
HCC1599	CCLE Cell Line Gene CNV Profiles	1.0	2.00287
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50803
NCIH2196	CCLE Cell Line Gene CNV Profiles	-1.0	-2.02045
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052994
sirtknockdown	GeneRIF Biological Term Annotations	1.0	null
15284443-Table5	GeneSigDB Published Gene Signatures	1.0	null
emt	GeneRIF Biological Term Annotations	1.0	null
colonic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06345
glomerulonephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.065148
developing	GeneRIF Biological Term Annotations	1.0	null
endothelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.121234
microrna217	GeneRIF Biological Term Annotations	1.0	null
cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044616
deregulated	GeneRIF Biological Term Annotations	1.0	null
kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.306805
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44203
host	GeneRIF Biological Term Annotations	1.0	null
NCI-H23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26724
silent	GeneRIF Biological Term Annotations	1.0	null
lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.069584
SCC4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64311
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.618268
pancreatic	GeneRIF Biological Term Annotations	1.0	null
OAW28	CCLE Cell Line Gene CNV Profiles	1.0	1.51922
sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064019
atherosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.167224
CEBPB_A549_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H2196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.95026
EWS502	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6055
capsular epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.21883
iga glomerulonephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.162707
presence	GeneRIF Biological Term Annotations	1.0	null
renal corpuscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.269867
pathways	GeneRIF Biological Term Annotations	1.0	null
NCI-H1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.65253
colorectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05801
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83872
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04825
accumulation	GeneRIF Biological Term Annotations	1.0	null
vascular endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.110409
vasculature	GeneRIF Biological Term Annotations	1.0	null
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041692
reproductive organ benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.328105
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37525
hemin	GeneRIF Biological Term Annotations	1.0	null
aortic endothelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.268137
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054934
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.52343
musculoskeletal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044194
NCI-H716	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53441
uterine fibroid	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.442042
carcinomas	GeneRIF Biological Term Annotations	1.0	null
JHH-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24878
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
KAT2A_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
positive	GeneRIF Biological Term Annotations	1.0	null
HCC4011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26724
pancreatic acinar-to-ductal metaplasia	MGI Mouse Phenotype Associations 2023	1.0	null
JHH1	CCLE Cell Line Gene CNV Profiles	1.0	1.86785
LXFL529	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21434
germ layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058011
tyrosine	GeneRIF Biological Term Annotations	1.0	null
uterine	GeneRIF Biological Term Annotations	1.0	null
COLO320	CCLE Cell Line Gene CNV Profiles	1.0	1.80416
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.59439
suppressor	GeneRIF Biological Term Annotations	1.0	null
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.396465
HDLM2	CCLE Cell Line Gene CNV Profiles	1.0	1.35988
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
mir196a	GeneRIF Biological Term Annotations	1.0	null
microrna	GeneRIF Biological Term Annotations	1.0	null
HEP G2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.947298
NCI-H1869	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.905435
rational	GeneRIF Biological Term Annotations	1.0	null
SNU-398	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53441
blood vessel endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.308974
UACC893	CCLE Cell Line Gene CNV Profiles	1.0	2.83364
predictive	GeneRIF Biological Term Annotations	1.0	null
skeletal muscle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062523
POLR2A_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.626495
dnmt3a	GeneRIF Biological Term Annotations	1.0	null
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059677
membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.047231
NCIH1792	CCLE Cell Line Gene CNV Profiles	1.0	2.36779
axis	GeneRIF Biological Term Annotations	1.0	null
mir137	GeneRIF Biological Term Annotations	1.0	null
BRAF_drug inhibition_GSE42872_368_human_A375	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
LAMA84	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64232
rectal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069007
KYSE-70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14698
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.881642
Disease Models, Animal	CTD Gene-Disease Associations	1.0	1.05163
ulm	GeneRIF Biological Term Annotations	1.0	null
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.8074
NCIH2052	CCLE Cell Line Gene CNV Profiles	1.0	1.923
H3K4me1_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
five	GeneRIF Biological Term Annotations	1.0	null
intestinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.177851
L428	CCLE Cell Line Gene CNV Profiles	1.0	1.42907
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051591
POLR2AphosphoS2_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JIMT-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.984021
arteriosclerotic cardiovascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.166319
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041368
OVMANA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.904477
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33944
OAW28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10366
duodenum cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.597961
ethanolinduced	GeneRIF Biological Term Annotations	1.0	null
three	GeneRIF Biological Term Annotations	1.0	null
MCF10DCIS.COM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.881642
mir4792	GeneRIF Biological Term Annotations	1.0	null
adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.314046
KAT2A	ENCODE Transcription Factor Targets	1.0	null
aorta endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.189691
vascular endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.126483
NCIH1155	CCLE Cell Line Gene CNV Profiles	1.0	1.3577
among	GeneRIF Biological Term Annotations	1.0	null
H3K4me2_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
renal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.44181
bone cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.052407
unknown	GeneRIF Biological Term Annotations	1.0	null
L1236	CCLE Cell Line Gene CNV Profiles	1.0	1.89755
colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059925
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2748
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.82927
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053347
top	GeneRIF Biological Term Annotations	1.0	null
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10219
TP53	ChEA Transcription Factor Targets	1.0	null
uterine benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.440162
HCC1195	CCLE Cell Line Gene CNV Profiles	1.0	1.4812
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01688
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.43644
A549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26902
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05137
HT	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21015
infection	GeneRIF Biological Term Annotations	1.0	null
inhibitor	GeneRIF Biological Term Annotations	1.0	null
chondrocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.294223
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053237
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.894841
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052107
skeletal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055399
ampulla of vater carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.752492
A2780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32703
SNU-449	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.09658
NCIH1838	CCLE Cell Line Gene CNV Profiles	1.0	1.50708
coronary artery endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.543359
NFIC	JASPAR Predicted Transcription Factor Targets	1.0	null
H3K27me3_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
senescence	GeneRIF Biological Term Annotations	1.0	null
philadelphia	GeneRIF Biological Term Annotations	1.0	null
clathrin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.524294
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
intestinal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061166
ho1	GeneRIF Biological Term Annotations	1.0	null
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.894841
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.379875
downregulated	GeneRIF Biological Term Annotations	1.0	null
adenocarcinoma	GeneRIF Biological Term Annotations	1.0	null
mir490	GeneRIF Biological Term Annotations	1.0	null
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054329
epithelial	GeneRIF Biological Term Annotations	1.0	null
therapeutic	GeneRIF Biological Term Annotations	1.0	null
M059K	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46439
downregulating	GeneRIF Biological Term Annotations	1.0	null
SNU-601	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83872
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
membrane coat	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.434591
mir217sirt1	GeneRIF Biological Term Annotations	1.0	null
TP53-22573176-HFKS-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
G120	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83872
HS 766T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.924564
epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.280364
clear	GeneRIF Biological Term Annotations	1.0	null
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33944
osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.333218
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14798
rectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065119
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
diagnostic	GeneRIF Biological Term Annotations	1.0	null
HCC1187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83872
KALS1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44733
increased susceptibility to induced pancreatitis	MGI Mouse Phenotype Associations 2023	1.0	null
colorectal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070578
bone cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057733
benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050218
NCI-H1882	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.924564
NCIH2141	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59365
mir377	GeneRIF Biological Term Annotations	1.0	null
studies	GeneRIF Biological Term Annotations	1.0	null
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.981322
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.563637
NCIH1623	CCLE Cell Line Gene CNV Profiles	1.0	1.58185
rectal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068533
endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.313915
upregulation	GeneRIF Biological Term Annotations	1.0	null
downregulation	GeneRIF Biological Term Annotations	1.0	null
cartilage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070356
large intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057744
SF539	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39039
frequently	GeneRIF Biological Term Annotations	1.0	null
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.25983
pancreatic carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.979268
tat	GeneRIF Biological Term Annotations	1.0	null
NCI-H1623	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39
exocrine pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.119078
kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045581
cell type benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.0459
POLR2A	ENCODE Transcription Factor Targets	1.0	null
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.65762
G22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11557
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.894841
HCC12	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21434
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.894841
J82	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50536
BFTC-909	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83872
artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.085169
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.54812
carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053453
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26724
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054725
renal cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.476589
adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056444
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.947298
Neoplasm Invasiveness	CTD Gene-Disease Associations	1.0	2.88009
SNU503	CCLE Cell Line Gene CNV Profiles	1.0	2.45991
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.546533
promoted	GeneRIF Biological Term Annotations	1.0	null
RC-K8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32703
ampulla of vater cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.733001
ABC1	CCLE Cell Line Gene CNV Profiles	1.0	1.62889
LNCAPCLONEFGC	CCLE Cell Line Gene CNV Profiles	-1.0	-2.401
sirt1	GeneRIF Biological Term Annotations	1.0	null
ampulla of vater adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.981373
NCI-H1734	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.86419
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.275445
OVCAR-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.86419
combination	GeneRIF Biological Term Annotations	1.0	null
nephron	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.092645
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5369
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063195
mirna	GeneRIF Biological Term Annotations	1.0	null
kras	GeneRIF Biological Term Annotations	1.0	null
Liver Diseases	CTD Gene-Disease Associations	1.0	1.11255
HCC202	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12132
angiogenesis	GeneRIF Biological Term Annotations	1.0	null
respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051588
pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.38552
A-427	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.828449
EBC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53682
NCIH69	CCLE Cell Line Gene CNV Profiles	-1.0	-1.83405
HUG1N	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32876
connective tissue cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045104
pancreatic ductal adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.18453
aortic endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.193175
H2AFZ_B cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH23	CCLE Cell Line Gene CNV Profiles	1.0	1.62792
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14798
links	GeneRIF Biological Term Annotations	1.0	null
NUGC-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83872
59M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.866028
vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.222938
targets	GeneRIF Biological Term Annotations	1.0	null
20406893-Table1a	GeneSigDB Published Gene Signatures	1.0	null
leukemia	GeneRIF Biological Term Annotations	1.0	null
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.295297
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051032
endothelial	GeneRIF Biological Term Annotations	1.0	null
kinase	GeneRIF Biological Term Annotations	1.0	null
hcc	GeneRIF Biological Term Annotations	1.0	null
renal glomerular capsule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.190466
OVCAR4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42593
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52101
aorta	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.121234
renal	GeneRIF Biological Term Annotations	1.0	null
adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.508424
human aortic endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.487496
uncover	GeneRIF Biological Term Annotations	1.0	null
BT-483	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.86699
NCI-H1155	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21434
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.981322
profiling	GeneRIF Biological Term Annotations	1.0	null
serous	GeneRIF Biological Term Annotations	1.0	null
KLM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83872
chromosome	GeneRIF Biological Term Annotations	1.0	null
achn cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.737206
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04213
G130	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2098
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2748
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.59913
mesenchyme	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.22797
shsow	GeneRIF Biological Term Annotations	1.0	null
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054344
lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.087307
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21434