association	dataset	threshold value	standardized value
giloma	GeneRIF Biological Term Annotations	1.0	null
u87mg	GeneRIF Biological Term Annotations	1.0	null
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.939584
showed	GeneRIF Biological Term Annotations	1.0	null
FOS_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
apoptosis	GeneRIF Biological Term Annotations	1.0	null
sh3gl1	GeneRIF Biological Term Annotations	1.0	null
gja1	GeneRIF Biological Term Annotations	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
adam9	GeneRIF Biological Term Annotations	1.0	null
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.939584
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12901
JUN	ENCODE Transcription Factor Targets	1.0	null
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12901
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11586
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855794
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.902159
myofibroblast	GeneRIF Biological Term Annotations	1.0	null
HT	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34043
chinese	GeneRIF Biological Term Annotations	1.0	null
SKNMC	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54034
upregulating	GeneRIF Biological Term Annotations	1.0	null
NKX2-5	JASPAR Predicted Transcription Factor Targets	1.0	null
FOS_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1781	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05747
H3K27ac_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.950058
decrease	GeneRIF Biological Term Annotations	1.0	null
glioma	GeneRIF Biological Term Annotations	1.0	null
SUIT-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.38809
SNU16	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39409
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32302
H3K36me3_kidney_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
birc5	GeneRIF Biological Term Annotations	1.0	null
ikkbetanfkappab	GeneRIF Biological Term Annotations	1.0	null
located	GeneRIF Biological Term Annotations	1.0	null
STAT4	MotifMap Predicted Transcription Factor Targets	1.0	null
IRF1	ENCODE Transcription Factor Targets	1.0	null
SW 900	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55616
CTCF_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27ac_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H2803	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.884735
SK-MEL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.69946
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20153
glioblastoma	GeneRIF Biological Term Annotations	1.0	null
inhibiting	GeneRIF Biological Term Annotations	1.0	null
posttranscriptional	GeneRIF Biological Term Annotations	1.0	null
H3K9ac_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
often	GeneRIF Biological Term Annotations	1.0	null
increase	GeneRIF Biological Term Annotations	1.0	null
mirna218	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HOS	CCLE Cell Line Gene CNV Profiles	-1.0	-1.56994
mesenchymal	GeneRIF Biological Term Annotations	1.0	null
central	GeneRIF Biological Term Annotations	1.0	null
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83181
SW900	CCLE Cell Line Gene CNV Profiles	1.0	1.87201
tumorsuppressive	GeneRIF Biological Term Annotations	1.0	null
regulated	GeneRIF Biological Term Annotations	1.0	null
SNU410	CCLE Cell Line Gene CNV Profiles	-1.0	-2.53459
demonstrated	GeneRIF Biological Term Annotations	1.0	null
BFTC-909	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.939584
regulator	GeneRIF Biological Term Annotations	1.0	null
lung	GeneRIF Biological Term Annotations	1.0	null
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.68301
mrnas	GeneRIF Biological Term Annotations	1.0	null
direct	GeneRIF Biological Term Annotations	1.0	null
mir218tpd52	GeneRIF Biological Term Annotations	1.0	null
CEBPD	ChEA Transcription Factor Targets	1.0	null
JIMT-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.96072
box1	GeneRIF Biological Term Annotations	1.0	null
HS 852.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31613
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13084
H3K36me3_U2OS_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
skmel2	GeneRIF Biological Term Annotations	1.0	null
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.99871
negative	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_G1E-ER4_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
osteosarcoma	GeneRIF Biological Term Annotations	1.0	null
scc	GeneRIF Biological Term Annotations	1.0	null
mirnamediated	GeneRIF Biological Term Annotations	1.0	null
p53	GeneRIF Biological Term Annotations	1.0	null
line	GeneRIF Biological Term Annotations	1.0	null
H3K4me2_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
first	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_keratinocyte_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
suppressive	GeneRIF Biological Term Annotations	1.0	null
disruption	GeneRIF Biological Term Annotations	1.0	null
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04361
proliferation	GeneRIF Biological Term Annotations	1.0	null
cyclindependent	GeneRIF Biological Term Annotations	1.0	null
H3K56ac_IMR90	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9ac_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
vitamin c_mus musculus_gpl6246_gse19377	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
proliferative	GeneRIF Biological Term Annotations	1.0	null
most	GeneRIF Biological Term Annotations	1.0	null
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
into	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.39555
DMS53	CCLE Cell Line Gene CNV Profiles	1.0	1.41944
HUH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.03908
population	GeneRIF Biological Term Annotations	1.0	null
CAL 27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31549
suppressor	GeneRIF Biological Term Annotations	1.0	null
adiposederived	GeneRIF Biological Term Annotations	1.0	null
kit	GeneRIF Biological Term Annotations	1.0	null
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07227
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.60156
CTCF_fibroblast of skin of abdomen_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HT	CCLE Cell Line Gene CNV Profiles	-1.0	-1.94822
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80031
H3K36me3_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HUH7	CCLE Cell Line Gene CNV Profiles	1.0	2.13584
KYSE-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.04553
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.939584
hepatitis	GeneRIF Biological Term Annotations	1.0	null
suppressed	GeneRIF Biological Term Annotations	1.0	null
JHH6	CCLE Cell Line Gene CNV Profiles	1.0	1.65299
demonstrate	GeneRIF Biological Term Annotations	1.0	null
NCIH1436	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70088
KP3	CCLE Cell Line Gene CNV Profiles	1.0	1.56719
terminus	GeneRIF Biological Term Annotations	1.0	null
NCI-H1915	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41023
kinase	GeneRIF Biological Term Annotations	1.0	null
connexin43	GeneRIF Biological Term Annotations	1.0	null
FOS_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
suppression	GeneRIF Biological Term Annotations	1.0	null
mir133a	GeneRIF Biological Term Annotations	1.0	null
regulate	GeneRIF Biological Term Annotations	1.0	null
squamous	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
pathogenesis	GeneRIF Biological Term Annotations	1.0	null
PRRX2	JASPAR Predicted Transcription Factor Targets	1.0	null
HCC2218	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35482
positive	GeneRIF Biological Term Annotations	1.0	null
firstly	GeneRIF Biological Term Annotations	1.0	null
gbm	GeneRIF Biological Term Annotations	1.0	null
oral	GeneRIF Biological Term Annotations	1.0	null
differentiation	GeneRIF Biological Term Annotations	1.0	null
strongly	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SUIT2	CCLE Cell Line Gene CNV Profiles	1.0	1.91539
survival	GeneRIF Biological Term Annotations	1.0	null
U266B1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44749
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17595
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.95053
H3K4me2_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04289
SK-MES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.59378
MESSA	CCLE Cell Line Gene CNV Profiles	1.0	1.79259
BICR22	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33414
stem	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_G1E-ER4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
network	GeneRIF Biological Term Annotations	1.0	null
multiple	GeneRIF Biological Term Annotations	1.0	null
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
IRF1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25167
hoxb3	GeneRIF Biological Term Annotations	1.0	null
lobe	GeneRIF Biological Term Annotations	1.0	null
subjects	GeneRIF Biological Term Annotations	1.0	null
NCIH358	CCLE Cell Line Gene CNV Profiles	1.0	1.41747
mir218	GeneRIF Biological Term Annotations	1.0	null
directly	GeneRIF Biological Term Annotations	1.0	null
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25071
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5074
result	GeneRIF Biological Term Annotations	1.0	null
FOS_MCF 10A_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
correlated	GeneRIF Biological Term Annotations	1.0	null
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.5141
slitmir218robo1	GeneRIF Biological Term Annotations	1.0	null
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31125
H3K79me2_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03556
RBBP5	ENCODE Transcription Factor Targets	1.0	null
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29091
osteogenic	GeneRIF Biological Term Annotations	1.0	null
NCI-H2452	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0145
HCC38	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21047
RT11284	CCLE Cell Line Gene CNV Profiles	1.0	1.39125
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.902159
radiosensitivity	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
heart	GeneRIF Biological Term Annotations	1.0	null
proved	GeneRIF Biological Term Annotations	1.0	null
RUNX1_01_344	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	0.60147
describe	GeneRIF Biological Term Annotations	1.0	null
mirna	GeneRIF Biological Term Annotations	1.0	null
HCC2279	CCLE Cell Line Gene CNV Profiles	1.0	1.48015
SIX4_01_269	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.58806
silenced	GeneRIF Biological Term Annotations	1.0	null
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855794
STAT1:STAT1	MotifMap Predicted Transcription Factor Targets	1.0	null
hippocampus	GeneRIF Biological Term Annotations	1.0	null
robo1	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-330	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.14331
SNU46	CCLE Cell Line Gene CNV Profiles	1.0	2.36294
acted	GeneRIF Biological Term Annotations	1.0	null
H4K91ac_IMR90	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
HCC1534	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.05987
CEBPD-23245923-MEF-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
mechanisms	GeneRIF Biological Term Annotations	1.0	null
angiogenesis	GeneRIF Biological Term Annotations	1.0	null
ARID3A	JASPAR Predicted Transcription Factor Targets	1.0	null
adenocarcinoma	GeneRIF Biological Term Annotations	1.0	null
KMS-12-BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04289
NCI-H2171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04289
cezannefak	GeneRIF Biological Term Annotations	1.0	null
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07227
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.96072
H3K4me1_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
RB1_KD_GSE50532_627_human_OSTEOBLASTS	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
gliomas	GeneRIF Biological Term Annotations	1.0	null
NCIH322	CCLE Cell Line Gene CNV Profiles	1.0	1.88504
hippocampal	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HUH-7	COSMIC Cell Line Gene CNV Profiles	1.0	2.12931
lef1	GeneRIF Biological Term Annotations	1.0	null
whose	GeneRIF Biological Term Annotations	1.0	null
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	2.88009
control	GeneRIF Biological Term Annotations	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
reduced	GeneRIF Biological Term Annotations	1.0	null
tpd52	GeneRIF Biological Term Annotations	1.0	null
OVKATE	CCLE Cell Line Gene CNV Profiles	1.0	1.34062
prostate	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SKMEL1	CCLE Cell Line Gene CNV Profiles	1.0	2.60053
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0145
SNU601	CCLE Cell Line Gene CNV Profiles	-1.0	-2.11311
STAT1	MotifMap Predicted Transcription Factor Targets	1.0	null
HEC59	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32968
lasp1	GeneRIF Biological Term Annotations	1.0	null
SKBR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76775
those	GeneRIF Biological Term Annotations	1.0	null
particularly	GeneRIF Biological Term Annotations	1.0	null
TE1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.2969
H3K36me3_brain_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ncadherin	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_Mobilized CD34 Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
cavity	GeneRIF Biological Term Annotations	1.0	null
cycle	GeneRIF Biological Term Annotations	1.0	null
HDLM2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.421
repressed	GeneRIF Biological Term Annotations	1.0	null
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
promotes	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HLF	CCLE Cell Line Gene CNV Profiles	1.0	1.42375
cip2a	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
medulloblastoma	GeneRIF Biological Term Annotations	1.0	null
tumors	GeneRIF Biological Term Annotations	1.0	null
gli1	GeneRIF Biological Term Annotations	1.0	null
microrna218	GeneRIF Biological Term Annotations	1.0	null
variant	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
oncogenesis	GeneRIF Biological Term Annotations	1.0	null
encoding	GeneRIF Biological Term Annotations	1.0	null
TM31	CCLE Cell Line Gene CNV Profiles	1.0	1.64611
a375	GeneRIF Biological Term Annotations	1.0	null
contribute	GeneRIF Biological Term Annotations	1.0	null
AP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
downregulation	GeneRIF Biological Term Annotations	1.0	null
fibroblasts	GeneRIF Biological Term Annotations	1.0	null
bladder	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
developmentally	GeneRIF Biological Term Annotations	1.0	null
20406893-Table1b	GeneSigDB Published Gene Signatures	1.0	null
sclerosis	GeneRIF Biological Term Annotations	1.0	null
tissues	GeneRIF Biological Term Annotations	1.0	null
survivin	GeneRIF Biological Term Annotations	1.0	null
dexamethasone_homo sapiens_gpl6244_gse20963	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
hmgb1	GeneRIF Biological Term Annotations	1.0	null
glce	GeneRIF Biological Term Annotations	1.0	null
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04361
mir218rtkhif2alpha	GeneRIF Biological Term Annotations	1.0	null
SJSA1	CCLE Cell Line Gene CNV Profiles	1.0	3.26151
EW-7	COSMIC Cell Line Gene CNV Profiles	1.0	2.12931
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855794
gastric	GeneRIF Biological Term Annotations	1.0	null
melanoma	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K27ac_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
tgfbeta	GeneRIF Biological Term Annotations	1.0	null
DMS153	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32904
SNU-601	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.85746
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.950058
invasion	GeneRIF Biological Term Annotations	1.0	null
preventing	GeneRIF Biological Term Annotations	1.0	null
deregulated	GeneRIF Biological Term Annotations	1.0	null
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.18252
A-431	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.997355
upregulates	GeneRIF Biological Term Annotations	1.0	null
NCI-H358	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.950058
STAT3_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulatory	GeneRIF Biological Term Annotations	1.0	null
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20153
EZH2_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOS_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SUPHD1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58708
cdk6	GeneRIF Biological Term Annotations	1.0	null
upregulation	GeneRIF Biological Term Annotations	1.0	null
HS729	CCLE Cell Line Gene CNV Profiles	1.0	1.34144
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32207
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
lines	GeneRIF Biological Term Annotations	1.0	null
FOS	ENCODE Transcription Factor Targets	1.0	null
PEER	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54064
STAT3_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JUN_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
potent	GeneRIF Biological Term Annotations	1.0	null
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2619
lead	GeneRIF Biological Term Annotations	1.0	null
functions	GeneRIF Biological Term Annotations	1.0	null
genetic	GeneRIF Biological Term Annotations	1.0	null
HCC2218	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71014
group	GeneRIF Biological Term Annotations	1.0	null
lung	GTEx Tissue Gene Expression Profiles	1.0	0.952568
TE9	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60558
decreased	GeneRIF Biological Term Annotations	1.0	null
present	GeneRIF Biological Term Annotations	1.0	null
WSU-NHL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47795
aberrant	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H2AFZ_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ability	GeneRIF Biological Term Annotations	1.0	null
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3788
KYSE180	CCLE Cell Line Gene CNV Profiles	-1.0	-1.79065
invasive	GeneRIF Biological Term Annotations	1.0	null
U266B1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.87956
risk	GeneRIF Biological Term Annotations	1.0	null
temporal	GeneRIF Biological Term Annotations	1.0	null
HCC1576	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.871434
H3K9me3_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
TMD8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41432
provided	GeneRIF Biological Term Annotations	1.0	null
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
primary	GeneRIF Biological Term Annotations	1.0	null
NCIH1836	CCLE Cell Line Gene CNV Profiles	1.0	1.8618
mir2182	GeneRIF Biological Term Annotations	1.0	null
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
H3K4me1_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855794
H3K4me1_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.05987
axis	GeneRIF Biological Term Annotations	1.0	null
regulating	GeneRIF Biological Term Annotations	1.0	null
U343	CCLE Cell Line Gene CNV Profiles	1.0	1.535
HEP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855794
necrotic	GeneRIF Biological Term Annotations	1.0	null
virusexposed	GeneRIF Biological Term Annotations	1.0	null
loss	GeneRIF Biological Term Annotations	1.0	null
transfected	GeneRIF Biological Term Annotations	1.0	null
SCC-25	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12901
LN-18	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.871434
RT112	CCLE Cell Line Gene CNV Profiles	1.0	1.61024
downregulated	GeneRIF Biological Term Annotations	1.0	null
correlation	GeneRIF Biological Term Annotations	1.0	null
G124	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.96489
ECC12	CCLE Cell Line Gene CNV Profiles	-1.0	-1.78197
cervical	GeneRIF Biological Term Annotations	1.0	null
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.997355
pc3	GeneRIF Biological Term Annotations	1.0	null
NCI-H1568	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.99871
oncogenes	GeneRIF Biological Term Annotations	1.0	null
rs11134527	GeneRIF Biological Term Annotations	1.0	null
there	GeneRIF Biological Term Annotations	1.0	null
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32302
involvement	GeneRIF Biological Term Annotations	1.0	null
grade	GeneRIF Biological Term Annotations	1.0	null
circuit	GeneRIF Biological Term Annotations	1.0	null
JIMT1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.1633
H3K27me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
invasiveness	GeneRIF Biological Term Annotations	1.0	null
phenotype	GeneRIF Biological Term Annotations	1.0	null
mir1	GeneRIF Biological Term Annotations	1.0	null
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.76001
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17595
supporting	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mesial	GeneRIF Biological Term Annotations	1.0	null
inhibits	GeneRIF Biological Term Annotations	1.0	null
mimic	GeneRIF Biological Term Annotations	1.0	null
blocking	GeneRIF Biological Term Annotations	1.0	null
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.871434
HEP3B217	CCLE Cell Line Gene CNV Profiles	1.0	1.36677
behavior	GeneRIF Biological Term Annotations	1.0	null
NCI-H2196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.884735
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0145
mobility	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
oncogenic	GeneRIF Biological Term Annotations	1.0	null
STAT3	ENCODE Transcription Factor Targets	1.0	null
hepatocellular	GeneRIF Biological Term Annotations	1.0	null
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5074
underlying	GeneRIF Biological Term Annotations	1.0	null
STAT5A (homodimer)	MotifMap Predicted Transcription Factor Targets	1.0	null
pathways	GeneRIF Biological Term Annotations	1.0	null
epilepsy	GeneRIF Biological Term Annotations	1.0	null
Liver Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
vivo	GeneRIF Biological Term Annotations	1.0	null
predictor	GeneRIF Biological Term Annotations	1.0	null
SJSA-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.12931
downstream	GeneRIF Biological Term Annotations	1.0	null
NCI-H1770	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.91592
breast	GeneRIF Biological Term Annotations	1.0	null
moreover	GeneRIF Biological Term Annotations	1.0	null
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29026
KYSE-510	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.249
reversely	GeneRIF Biological Term Annotations	1.0	null
gistt1	GeneRIF Biological Term Annotations	1.0	null
NO-11	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.14331
NCIH1299	CCLE Cell Line Gene CNV Profiles	1.0	1.5828
H3K27ac_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
epigenetically	GeneRIF Biological Term Annotations	1.0	null
HS852T	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60678
H2AFZ_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
targets	GeneRIF Biological Term Annotations	1.0	null
region	GeneRIF Biological Term Annotations	1.0	null
mir2181	GeneRIF Biological Term Annotations	1.0	null
insights	GeneRIF Biological Term Annotations	1.0	null
identification	GeneRIF Biological Term Annotations	1.0	null
deleted	GeneRIF Biological Term Annotations	1.0	null
metastasis	GeneRIF Biological Term Annotations	1.0	null
RERFLCAD1	CCLE Cell Line Gene CNV Profiles	1.0	1.7303
pancreatic	GeneRIF Biological Term Annotations	1.0	null
OLIG2	ChEA Transcription Factor Targets	1.0	null
mirnas	GeneRIF Biological Term Annotations	1.0	null
MKN45	CCLE Cell Line Gene CNV Profiles	1.0	2.04655
NCI-H2122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.871434
migration	GeneRIF Biological Term Annotations	1.0	null
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.950058
induce	GeneRIF Biological Term Annotations	1.0	null
polymorphism	GeneRIF Biological Term Annotations	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
nerve	GTEx Tissue Gene Expression Profiles	1.0	1.03123
targeted	GeneRIF Biological Term Annotations	1.0	null
targeting	GeneRIF Biological Term Annotations	1.0	null
while	GeneRIF Biological Term Annotations	1.0	null
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.99936
reported	GeneRIF Biological Term Annotations	1.0	null
CA SKI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.902901
H3K4me2_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
stage	GeneRIF Biological Term Annotations	1.0	null
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.95053
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.59471
mir7	GeneRIF Biological Term Annotations	1.0	null
Cholestasis	CTD Gene-Disease Associations	1.0	2.88009
congenital	GeneRIF Biological Term Annotations	1.0	null
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08353
compared	GeneRIF Biological Term Annotations	1.0	null
molecular	GeneRIF Biological Term Annotations	1.0	null
especially	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
OLIG2-23332759-OLIGODENDROCYTES-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08353
bmi1	GeneRIF Biological Term Annotations	1.0	null