association	dataset	threshold value	standardized value
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.425138
TRIM28_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KDM5B_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LMSU	CCLE Cell Line Gene CNV Profiles	1.0	1.52817
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.435672
marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.879089
bone marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07435
nerve sheath cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.445653
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.658272
peripheral blood mononuclear cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.781894
macrophage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.560847
viral nucleocapsid	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.156342
lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.086738
responsive	GeneRIF Biological Term Annotations	1.0	null
malignant peripheral nerve sheath cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.450657
CTCF_B cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
reveal	GeneRIF Biological Term Annotations	1.0	null
15284443-Table5	GeneSigDB Published Gene Signatures	1.0	null
gastric cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.140411
H3K27ac_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
nerve sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.412391
mononuclear phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.643263
abnormal neutrophil differentiation	MGI Mouse Phenotype Associations 2023	1.0	null
elevated	GeneRIF Biological Term Annotations	1.0	null
vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.166405
e2f1	GeneRIF Biological Term Annotations	1.0	null
proinflammatory	GeneRIF Biological Term Annotations	1.0	null
dependent	GeneRIF Biological Term Annotations	1.0	null
cardiomyopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.158951
H2AFZ_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH650	CCLE Cell Line Gene CNV Profiles	1.0	1.42347
blood plasma	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.938777
H3K27ac_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
MYC_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
escc	GeneRIF Biological Term Annotations	1.0	null
MAX_NB4_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsamir125b	GeneRIF Biological Term Annotations	1.0	null
lymphoproliferative	GeneRIF Biological Term Annotations	1.0	null
clinic	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12868_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ARID3A_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
carrying	GeneRIF Biological Term Annotations	1.0	null
abnormal granulocyte number	MPO Gene-Phenotype Associations	1.0	null
RAD21_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
inhibition	GeneRIF Biological Term Annotations	1.0	null
including	GeneRIF Biological Term Annotations	1.0	null
nephropathy	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12891_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
feature	GeneRIF Biological Term Annotations	1.0	null
therapeutic	GeneRIF Biological Term Annotations	1.0	null
MAX_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
blood cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.430312
H4K20me1_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_GM06990_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
osteosarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.24486
astroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069332
WRNIP1	ENCODE Transcription Factor Targets	1.0	null
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.79775
hepatoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.514924
upstream	GeneRIF Biological Term Annotations	1.0	null
hematopoietic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.3356
synaptonemal complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.567585
interleukin	GeneRIF Biological Term Annotations	1.0	null
mir223ect2p21	GeneRIF Biological Term Annotations	1.0	null
diffuse	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
subtype	GeneRIF Biological Term Annotations	1.0	null
UBTF_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
chondrocytes	GeneRIF Biological Term Annotations	1.0	null
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.289226
contributes	GeneRIF Biological Term Annotations	1.0	null
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062458
recurrent	GeneRIF Biological Term Annotations	1.0	null
NCI-H2009	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.12964
mir27a	GeneRIF Biological Term Annotations	1.0	null
micrornas	GeneRIF Biological Term Annotations	1.0	null
EP300_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HDAC6	ENCODE Transcription Factor Targets	1.0	null
targeted	GeneRIF Biological Term Annotations	1.0	null
active	GeneRIF Biological Term Annotations	1.0	null
SPI1_GM12891_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
suggested	GeneRIF Biological Term Annotations	1.0	null
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06864
TAF7_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
parenchyma	GeneRIF Biological Term Annotations	1.0	null
suppresser	GeneRIF Biological Term Annotations	1.0	null
hepatitis	GeneRIF Biological Term Annotations	1.0	null
abnormal immune system morphology	MPO Gene-Phenotype Associations	1.0	null
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.430312
plasmacytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.142006
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053034
MAX	ENCODE Transcription Factor Targets	1.0	null
when	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12869_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
decline	GeneRIF Biological Term Annotations	1.0	null
lymph node	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.584022
glucose metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.162109
intensely	GeneRIF Biological Term Annotations	1.0	null
143B	CCLE Cell Line Gene CNV Profiles	1.0	1.54146
proteasome accessory complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.165231
epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058407
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.454847
abnormal	GeneRIF Biological Term Annotations	1.0	null
granulocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.574416
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.466885
A704	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
ELK1	ENCODE Transcription Factor Targets	1.0	null
had	GeneRIF Biological Term Annotations	1.0	null
t-cell lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.22797
MECOM-23826213-KASUMI-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
b-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.574217
metastasisrelated	GeneRIF Biological Term Annotations	1.0	null
EP300_GM12878_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
igf1r	GeneRIF Biological Term Annotations	1.0	null
artn	GeneRIF Biological Term Annotations	1.0	null
leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.09881
endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.352227
extracellular region	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.16298
SRF_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
functions	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_CD34 Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
A498	CCLE Cell Line Gene CNV Profiles	1.0	1.77406
SPI1-23547873-NB4-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
RCOR1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hepg2	GeneRIF Biological Term Annotations	1.0	null
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848094
respiratory system inflammation	MPO Gene-Phenotype Associations	1.0	null
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.916069
central nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043932
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.352598
productinduced	GeneRIF Biological Term Annotations	1.0	null
OVCAR8	CCLE Cell Line Gene CNV Profiles	-1.0	-2.3514
eosinophilic esophagitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.774114
ovarian	GeneRIF Biological Term Annotations	1.0	null
immune system phenotype	MPO Gene-Phenotype Associations	1.0	null
advanced	GeneRIF Biological Term Annotations	1.0	null
kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054147
CTCF_spleen_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH1568	CCLE Cell Line Gene CNV Profiles	-1.0	-1.8646
SMC3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KMS21BM	CCLE Cell Line Gene CNV Profiles	-1.0	-1.66826
abnormal hematopoiesis	MPO Gene-Phenotype Associations	1.0	null
stroke	GeneRIF Biological Term Annotations	1.0	null
directly	GeneRIF Biological Term Annotations	1.0	null
possibly	GeneRIF Biological Term Annotations	1.0	null
internal	GeneRIF Biological Term Annotations	1.0	null
regulate	GeneRIF Biological Term Annotations	1.0	null
joint	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.185851
abnormal granulocyte morphology	MPO Gene-Phenotype Associations	1.0	null
germinal center	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.488667
RUNX3	ENCODE Transcription Factor Targets	1.0	null
RAD21_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
correlates	GeneRIF Biological Term Annotations	1.0	null
adherens junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.27998
H3K4me3_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_GM19239_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
20028859-TableS2	GeneSigDB Published Gene Signatures	1.0	null
PML	ENCODE Transcription Factor Targets	1.0	null
aml1eto	GeneRIF Biological Term Annotations	1.0	null
importin	GeneRIF Biological Term Annotations	1.0	null
attractive	GeneRIF Biological Term Annotations	1.0	null
significant	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
KYSE450	CCLE Cell Line Gene CNV Profiles	1.0	1.74136
hsamir223	GeneRIF Biological Term Annotations	1.0	null
transferred	GeneRIF Biological Term Annotations	1.0	null
greatly	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
control	GeneRIF Biological Term Annotations	1.0	null
cell-substrate junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.195353
muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.247719
PHF8	ENCODE Transcription Factor Targets	1.0	null
neutrophil	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.251279
CTCF_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
efficiently	GeneRIF Biological Term Annotations	1.0	null
proliferation	GeneRIF Biological Term Annotations	1.0	null
destruction	GeneRIF Biological Term Annotations	1.0	null
gastric adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.19742
CAL851	CCLE Cell Line Gene CNV Profiles	1.0	2.09602
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.45215
schistosomiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.187719
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3344
NUDUL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37397
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
acute myeloid leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.10776
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073429
CTCF_GM13977_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
another	GeneRIF Biological Term Annotations	1.0	null
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062509
ATM_KD_GSE54268_662_human_MCF-10A	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
liver	GeneRIF Biological Term Annotations	1.0	null
very	GeneRIF Biological Term Annotations	1.0	null
intestinal schistosomiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.597181
myeloid leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.099314
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.663149
POLR2AphosphoS5_GM12891_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir122	GeneRIF Biological Term Annotations	1.0	null
abnormal neutrophil differentiation	MPO Gene-Phenotype Associations	1.0	null
macroglia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064721
exosomes	GeneRIF Biological Term Annotations	1.0	null
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.19359
harboring	GeneRIF Biological Term Annotations	1.0	null
mir16	GeneRIF Biological Term Annotations	1.0	null
leukemic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.249006
NCIH747	CCLE Cell Line Gene CNV Profiles	1.0	1.41613
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.452198
H3K36me3_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAX_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
stimulates	GeneRIF Biological Term Annotations	1.0	null
transcription	GeneRIF Biological Term Annotations	1.0	null
glut4	GeneRIF Biological Term Annotations	1.0	null
myeloid progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.175136
HCC2157	CCLE Cell Line Gene CNV Profiles	1.0	1.40283
acute	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM19238_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
e2a	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_bone marrow_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
k562	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_K562_hg19_4	ENCODE Histone Modification Site Profiles	1.0	null
esophageal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.231448
Liver Neoplasms	CTD Gene-Disease Associations	1.0	1.09646
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.244601
NR2F2	ENCODE Transcription Factor Targets	1.0	null
sepsis	GeneRIF Biological Term Annotations	1.0	null
glomerular endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.190883
abnormal immune system cell morphology	MPO Gene-Phenotype Associations	1.0	null
H3K4me3_GM12864_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
POLR2A_heart_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nsteacs	GeneRIF Biological Term Annotations	1.0	null
state	GeneRIF Biological Term Annotations	1.0	null
increased leukocyte cell number	MPO Gene-Phenotype Associations	1.0	null
H3K4me3_GM06990_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.428783
adult t-cell lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.52556
SPI1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
alpha4	GeneRIF Biological Term Annotations	1.0	null
assessment	GeneRIF Biological Term Annotations	1.0	null
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24091
chronic lymphocytic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.242672
hepatic	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_GM12864_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.944141
BATF	ENCODE Transcription Factor Targets	1.0	null
igf1mediated	GeneRIF Biological Term Annotations	1.0	null
carbohydrate metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.162109
TRIM28	ENCODE Transcription Factor Targets	1.0	null
showed	GeneRIF Biological Term Annotations	1.0	null
weaker	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_megakaryocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.175947
TBL1XR1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cord	GeneRIF Biological Term Annotations	1.0	null
splenic marginal zone lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.294053
mir29c	GeneRIF Biological Term Annotations	1.0	null
MTA3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TEAD4_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_Jurkat_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
MAFF_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
smoke	GeneRIF Biological Term Annotations	1.0	null
mononuclear cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.914788
npc	GeneRIF Biological Term Annotations	1.0	null
pituitary	GTEx Tissue Gene Expression Profiles	-1.0	-1.34055
blood platelet	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.712959
CTCF_MCF-7_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
neoplastic	GeneRIF Biological Term Annotations	1.0	null
NCIH1930	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00401
POLR2A_GM19099_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTF2F1	ENCODE Transcription Factor Targets	1.0	null
IRF1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
calcification	GeneRIF Biological Term Annotations	1.0	null
esophageal squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.218613
acute leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.204593
CTCF_HepG2_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
IRF1	ENCODE Transcription Factor Targets	1.0	null
PML_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EZH2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mutant	GeneRIF Biological Term Annotations	1.0	null
lung	GTEx Tissue Gene Expression Profiles	1.0	0.928419
serve	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS2_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_HL-60_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RUNX3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
macrophages	GeneRIF Biological Term Annotations	1.0	null
osteoarthritis	GeneRIF Biological Term Annotations	1.0	null
CHD2	ENCODE Transcription Factor Targets	1.0	null
parp1	GeneRIF Biological Term Annotations	1.0	null
uptake	GeneRIF Biological Term Annotations	1.0	null
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.340019
H4K20me1_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
proteasome regulatory particle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.166884
myeloid	GeneRIF Biological Term Annotations	1.0	null
colorectal	GeneRIF Biological Term Annotations	1.0	null
numbers	GeneRIF Biological Term Annotations	1.0	null
metabolism	GeneRIF Biological Term Annotations	1.0	null
subsequent	GeneRIF Biological Term Annotations	1.0	null
where	GeneRIF Biological Term Annotations	1.0	null
prevents	GeneRIF Biological Term Annotations	1.0	null
HDAC2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
stomach carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.183541
H3K4me1_mononuclear cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
GATA2	ChEA Transcription Factor Targets	1.0	null
CTCF_GM06990_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NR2F2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.279659
CTCF_GM13976_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
skin	GTEx Tissue Gene Expression Profiles	-1.0	-0.877561
downregulated	GeneRIF Biological Term Annotations	1.0	null
NFIC	ENCODE Transcription Factor Targets	1.0	null
mild	GeneRIF Biological Term Annotations	1.0	null
inhibits	GeneRIF Biological Term Annotations	1.0	null
glioma	GeneRIF Biological Term Annotations	1.0	null
vascular	GeneRIF Biological Term Annotations	1.0	null
SCL-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
CTCF_HL-60_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
severe	GeneRIF Biological Term Annotations	1.0	null
qrtpcr	GeneRIF Biological Term Annotations	1.0	null
endothelial	GeneRIF Biological Term Annotations	1.0	null
strong	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cytokines	GeneRIF Biological Term Annotations	1.0	null
affected	GeneRIF Biological Term Annotations	1.0	null
TAF1	ENCODE Transcription Factor Targets	1.0	null
TBP	ENCODE Transcription Factor Targets	1.0	null
abnormal blood cell physiology	MPO Gene-Phenotype Associations	1.0	null
KAT2B	ENCODE Transcription Factor Targets	1.0	null
H3K9me3_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
HDAC2	ENCODE Transcription Factor Targets	1.0	null
erythroblast	GeneRIF Biological Term Annotations	1.0	null
POLR2A_GM18505_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CAL-85-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.07994
agents	GeneRIF Biological Term Annotations	1.0	null
BRAF_drug inhibition_GSE42872_368_human_A375	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
ZNF143_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_GM12875_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
meningitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.131881
SUM 52PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07877
consequent	GeneRIF Biological Term Annotations	1.0	null
il1beta	GeneRIF Biological Term Annotations	1.0	null
osteosarcoma	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_spleen_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
fbxw7	GeneRIF Biological Term Annotations	1.0	null
induced	GeneRIF Biological Term Annotations	1.0	null
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.616312
POLR2A_K562_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12505
hematopoietic system phenotype	MPO Gene-Phenotype Associations	1.0	null
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.992814
ELK1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GATA2_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
known	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19228
increased neutrophil cell number	MGI Mouse Phenotype Associations 2023	1.0	null
mediated	GeneRIF Biological Term Annotations	1.0	null
POLR2A_K562_hg19_8	ENCODE Transcription Factor Binding Site Profiles	1.0	null
suppression	GeneRIF Biological Term Annotations	1.0	null
bone cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063242
chronic leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.71078
adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.357058
H3K27ac_liver_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
TEAD4_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PHF8_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lymphoid leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.263722
myeloid leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.854449
leads	GeneRIF Biological Term Annotations	1.0	null
abnormal myelopoiesis	MPO Gene-Phenotype Associations	1.0	null
JUN_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TBL1XR1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
vivo	GeneRIF Biological Term Annotations	1.0	null
nlrp3	GeneRIF Biological Term Annotations	1.0	null
mir	GeneRIF Biological Term Annotations	1.0	null
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.74338
reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047031
RCOR1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir17	GeneRIF Biological Term Annotations	1.0	null
integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042435
diffuse large b-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.560616
eosinophilic meningitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.516879
correct	GeneRIF Biological Term Annotations	1.0	null
specificity	GeneRIF Biological Term Annotations	1.0	null
biopsies	GeneRIF Biological Term Annotations	1.0	null
other organism part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.108356
H3K4me3_GM12865_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
miRNA Regulation of DNA Damage Response(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
vulva cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.294772
hematopoietic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.358174
articular	GeneRIF Biological Term Annotations	1.0	null
actinic keratosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.181222
CCNT2	ENCODE Transcription Factor Targets	1.0	null
dictates	GeneRIF Biological Term Annotations	1.0	null
vulvar	GeneRIF Biological Term Annotations	1.0	null
present	GeneRIF Biological Term Annotations	1.0	null
UBTF	ENCODE Transcription Factor Targets	1.0	null
connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.062643
abnormal phagocyte morphology	MPO Gene-Phenotype Associations	1.0	null
skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.04272
NFYB_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
individuals	GeneRIF Biological Term Annotations	1.0	null
extracellular vesicular exosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.90321
responsiveness	GeneRIF Biological Term Annotations	1.0	null
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053137
peripheral blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.858837
MAX_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_erythroblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
effect	GeneRIF Biological Term Annotations	1.0	null
nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.099389
WRNIP1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
caprin1	GeneRIF Biological Term Annotations	1.0	null
mir96	GeneRIF Biological Term Annotations	1.0	null
endogenous	GeneRIF Biological Term Annotations	1.0	null
gastric corpus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.214954
insulinlike	GeneRIF Biological Term Annotations	1.0	null
partially	GeneRIF Biological Term Annotations	1.0	null
mature	GeneRIF Biological Term Annotations	1.0	null
NCIH1963	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33493
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.452825
isoforms	GeneRIF Biological Term Annotations	1.0	null
rheumatoid arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.531928
region	GeneRIF Biological Term Annotations	1.0	null
nonmetastatic	GeneRIF Biological Term Annotations	1.0	null
pi3kaktmtor	GeneRIF Biological Term Annotations	1.0	null
nucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.220321
host intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.295119
bone marrow cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.070172
only	GeneRIF Biological Term Annotations	1.0	null
regulator	GeneRIF Biological Term Annotations	1.0	null
STAT5A_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
stage	GeneRIF Biological Term Annotations	1.0	null
downstream	GeneRIF Biological Term Annotations	1.0	null
nktcell	GeneRIF Biological Term Annotations	1.0	null
UMUC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43885
providing	GeneRIF Biological Term Annotations	1.0	null
RCOR1	ENCODE Transcription Factor Targets	1.0	null
carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.52343
POLR2A_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hepatocellular	GeneRIF Biological Term Annotations	1.0	null
childrens	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53308
cycle	GeneRIF Biological Term Annotations	1.0	null
metastatic	GeneRIF Biological Term Annotations	1.0	null
pathways	GeneRIF Biological Term Annotations	1.0	null
death	GeneRIF Biological Term Annotations	1.0	null
noninvasive	GeneRIF Biological Term Annotations	1.0	null
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06864
end	GeneRIF Biological Term Annotations	1.0	null
BHLHE40	ENCODE Transcription Factor Targets	1.0	null
mir23a	GeneRIF Biological Term Annotations	1.0	null
abnormal inflammatory response	MPO Gene-Phenotype Associations	1.0	null
RAD21	ENCODE Transcription Factor Targets	1.0	null
bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.401199
injury	GeneRIF Biological Term Annotations	1.0	null
H3K4me2_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
factor1	GeneRIF Biological Term Annotations	1.0	null
HCC95	CCLE Cell Line Gene CNV Profiles	1.0	1.37249
RUNX3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
suppressed	GeneRIF Biological Term Annotations	1.0	null
liver cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.588031
chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.198991
megakaryocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.18409
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060288
heart	GeneRIF Biological Term Annotations	1.0	null
NFIC_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir221	GeneRIF Biological Term Annotations	1.0	null
MAFK	ENCODE Transcription Factor Targets	1.0	null
single	GeneRIF Biological Term Annotations	1.0	null
POLR2A_GM12892_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_LNCaP clone FGC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
possible	GeneRIF Biological Term Annotations	1.0	null
clusters	GeneRIF Biological Term Annotations	1.0	null
imbalance	GeneRIF Biological Term Annotations	1.0	null
suppresses	GeneRIF Biological Term Annotations	1.0	null
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.18022
septic	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
accumulation	GeneRIF Biological Term Annotations	1.0	null
HCFC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GATA2-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
mycosis fungoides	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.329565
caused	GeneRIF Biological Term Annotations	1.0	null
gastric cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.146277
phosphateinduced	GeneRIF Biological Term Annotations	1.0	null
chemotherapy	GeneRIF Biological Term Annotations	1.0	null
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42711
SRF_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
astrocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069892
t-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.713779
CTCF_GM12873_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
stat5a	GeneRIF Biological Term Annotations	1.0	null
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.977403
H3K27me3_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16675
prdm1	GeneRIF Biological Term Annotations	1.0	null
EJM	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43804
microrna223	GeneRIF Biological Term Annotations	1.0	null
GTF2F1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
glomerular endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.22415
critical	GeneRIF Biological Term Annotations	1.0	null
cyclin	GeneRIF Biological Term Annotations	1.0	null
abnormal neutrophil physiology	MPO Gene-Phenotype Associations	1.0	null
CPCN	CCLE Cell Line Gene CNV Profiles	1.0	1.49634
muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.057065
gastric	GeneRIF Biological Term Annotations	1.0	null
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07767
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.385436
suppress	GeneRIF Biological Term Annotations	1.0	null
condensed nuclear chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.436565
adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068917
myeloma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.077457
extramedullary plasmacytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.369997
aml	GeneRIF Biological Term Annotations	1.0	null
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833676
LUDLU1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20312
migration	GeneRIF Biological Term Annotations	1.0	null
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.23945
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.943316
within	GeneRIF Biological Term Annotations	1.0	null
lymphocytic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061471
glucocorticoids	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.438356
NCIH2009	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59348
transcriptional	GeneRIF Biological Term Annotations	1.0	null
stimulated	GeneRIF Biological Term Annotations	1.0	null
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.892073
abnormal leukocyte physiology	MPO Gene-Phenotype Associations	1.0	null
other	GeneRIF Biological Term Annotations	1.0	null
CTCFL	ENCODE Transcription Factor Targets	1.0	null
glucose	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12872_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
different	GeneRIF Biological Term Annotations	1.0	null
abnormal neutrophil physiology	MGI Mouse Phenotype Associations 2023	1.0	null
non-hodgkin lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.168854
CEBPD_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
adult	GeneRIF Biological Term Annotations	1.0	null
erythroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.295297
H4K20me1_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ATF2	ENCODE Transcription Factor Targets	1.0	null
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.942892
concert	GeneRIF Biological Term Annotations	1.0	null
decoy	GeneRIF Biological Term Annotations	1.0	null
changes	GeneRIF Biological Term Annotations	1.0	null
vulnerability	GeneRIF Biological Term Annotations	1.0	null
condensed chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.239916
EP300	ENCODE Transcription Factor Targets	1.0	null
osteoclastogenesis	GeneRIF Biological Term Annotations	1.0	null
synovial fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.299242
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.617393
arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.504973
schistosome	GeneRIF Biological Term Annotations	1.0	null
BACH1	ENCODE Transcription Factor Targets	1.0	null
hescs	GeneRIF Biological Term Annotations	1.0	null
peripheral nerve sheath cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.445653
alpha5	GeneRIF Biological Term Annotations	1.0	null
large	GeneRIF Biological Term Annotations	1.0	null
undifferentiated	GeneRIF Biological Term Annotations	1.0	null
chronic lymphocytic leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.716021
TE5	CCLE Cell Line Gene CNV Profiles	1.0	1.49471
first	GeneRIF Biological Term Annotations	1.0	null
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25112
NCIH727	CCLE Cell Line Gene CNV Profiles	-1.0	-1.92896
type	GeneRIF Biological Term Annotations	1.0	null
event	GeneRIF Biological Term Annotations	1.0	null
normal	GeneRIF Biological Term Annotations	1.0	null
suppressor	GeneRIF Biological Term Annotations	1.0	null
cellular	GeneRIF Biological Term Annotations	1.0	null
CUX1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057424
compared	GeneRIF Biological Term Annotations	1.0	null
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.227041
JUND	ENCODE Transcription Factor Targets	1.0	null
lmo2ls	GeneRIF Biological Term Annotations	1.0	null
risk	GeneRIF Biological Term Annotations	1.0	null
hbvpositive	GeneRIF Biological Term Annotations	1.0	null
POLR2A_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pax6	GeneRIF Biological Term Annotations	1.0	null
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045798
leukemia	GeneRIF Biological Term Annotations	1.0	null
POLR2A_GM12891_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.429547
RUNX1_01_159	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.94955
mir146a	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_B cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.227041
lines	GeneRIF Biological Term Annotations	1.0	null
VCAP	CCLE Cell Line Gene CNV Profiles	1.0	1.64697
survival	GeneRIF Biological Term Annotations	1.0	null
HDAC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.974744
H2AFZ_B cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
eGFP-JUND_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH1355	CCLE Cell Line Gene CNV Profiles	1.0	2.00702
arrestinducing	GeneRIF Biological Term Annotations	1.0	null
related	GeneRIF Biological Term Annotations	1.0	null
upregulated	GeneRIF Biological Term Annotations	1.0	null
lymphoma	GeneRIF Biological Term Annotations	1.0	null
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.342971
acquired metabolic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.060775
abnormally	GeneRIF Biological Term Annotations	1.0	null
tuberculosis	GeneRIF Biological Term Annotations	1.0	null
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.974744
CGTHW1	CCLE Cell Line Gene CNV Profiles	1.0	2.50026
GATA1-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833676
blood vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.438739
increased acute inflammation	MGI Mouse Phenotype Associations 2023	1.0	null
female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050372
POLR2A_NB4_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
deregulation	GeneRIF Biological Term Annotations	1.0	null
axis	GeneRIF Biological Term Annotations	1.0	null
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12595
deltaf508	GeneRIF Biological Term Annotations	1.0	null
mir199b	GeneRIF Biological Term Annotations	1.0	null
contribute	GeneRIF Biological Term Annotations	1.0	null
least	GeneRIF Biological Term Annotations	1.0	null
liver disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.301254
blast	GeneRIF Biological Term Annotations	1.0	null
increased neutrophil cell number	MPO Gene-Phenotype Associations	1.0	null
SPI1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mice	GeneRIF Biological Term Annotations	1.0	null
mir15	GeneRIF Biological Term Annotations	1.0	null
direct	GeneRIF Biological Term Annotations	1.0	null
immunophenotypes	GeneRIF Biological Term Annotations	1.0	null
leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.484766
arthritis	GeneRIF Biological Term Annotations	1.0	null
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.536957
heart disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.052934
UBTF_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.926764
blood vessel endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.347038
H3K4me3_K562_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
20068076-SuppTable4	GeneSigDB Published Gene Signatures	1.0	null
H3K4me1_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
esophageal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.106442
circulating	GeneRIF Biological Term Annotations	1.0	null
mir142	GeneRIF Biological Term Annotations	1.0	null
used	GeneRIF Biological Term Annotations	1.0	null
ARID3A	ENCODE Transcription Factor Targets	1.0	null
cellular phenotype	MPO Gene-Phenotype Associations	1.0	null
ZMIZ1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal acute inflammation	MPO Gene-Phenotype Associations	1.0	null
glioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062519
miR-targeted genes in muscle cell - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
lung inflammation	MPO Gene-Phenotype Associations	1.0	null
RERFLCAD2	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.54122
promoter	GeneRIF Biological Term Annotations	1.0	null
plasma cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.133966
small	GeneRIF Biological Term Annotations	1.0	null
nucleotides	GeneRIF Biological Term Annotations	1.0	null
19895320-Table1	GeneSigDB Published Gene Signatures	1.0	null
biology	GeneRIF Biological Term Annotations	1.0	null
CTCF_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_GM12892_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir143	GeneRIF Biological Term Annotations	1.0	null
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.70968
disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044425
repress	GeneRIF Biological Term Annotations	1.0	null
inorganic	GeneRIF Biological Term Annotations	1.0	null
CHD1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JUND_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
breast	GeneRIF Biological Term Annotations	1.0	null
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.892073
megakaryoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.179592
carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060288
erythroid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.221291
act	GeneRIF Biological Term Annotations	1.0	null
allergy	GeneRIF Biological Term Annotations	1.0	null
extracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.90321
BACH1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
vectors	GeneRIF Biological Term Annotations	1.0	null
nasal	GeneRIF Biological Term Annotations	1.0	null
hepatoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.276145
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.2452
stmn1	GeneRIF Biological Term Annotations	1.0	null
abnormal cell physiology	MPO Gene-Phenotype Associations	1.0	null
vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.357077
alter	GeneRIF Biological Term Annotations	1.0	null
igf1	GeneRIF Biological Term Annotations	1.0	null
biomarkers	GeneRIF Biological Term Annotations	1.0	null
MAZ_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hinge joint	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.288514
CTCF_LNCaP clone FGC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047192
SRF	ENCODE Transcription Factor Targets	1.0	null
CHD2_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal hematopoietic cell number	MPO Gene-Phenotype Associations	1.0	null
highlighted	GeneRIF Biological Term Annotations	1.0	null
nephron	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062765
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.40432
H3K4me3_B cell_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
serum	GeneRIF Biological Term Annotations	1.0	null
PML_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.353712
lymphoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.076858
gastric adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.186079
TBP_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_mononuclear cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mir25	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_megakaryocyte_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
alterations	GeneRIF Biological Term Annotations	1.0	null
eosinophil	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.254902
HCC366	CCLE Cell Line Gene CNV Profiles	1.0	2.41111
SPI1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
1321N1	CCLE Cell Line Gene CNV Profiles	1.0	1.58565
increased granulocyte number	MGI Mouse Phenotype Associations 2023	1.0	null
adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.390769
decreased	GeneRIF Biological Term Annotations	1.0	null
downregulation	GeneRIF Biological Term Annotations	1.0	null
abnormal adaptive immunity	MPO Gene-Phenotype Associations	1.0	null
esophagitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.361133
GATA2	ENCODE Transcription Factor Targets	1.0	null
progenitors	GeneRIF Biological Term Annotations	1.0	null
cell-substrate adherens junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.204378
mkn-7 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.34723
tcell	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
spleen	GTEx Tissue Gene Expression Profiles	1.0	1.20019
focal adhesion	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.207108
KDM5B	ENCODE Transcription Factor Targets	1.0	null
likely	GeneRIF Biological Term Annotations	1.0	null
resistance	GeneRIF Biological Term Annotations	1.0	null
breast cancer	GAD Gene-Disease Associations	1.0	null
SRF_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
respiratory system phenotype	MPO Gene-Phenotype Associations	1.0	null
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
KDM1A_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
rna	GeneRIF Biological Term Annotations	1.0	null
nuclear chromosome part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.203022
lmo2	GeneRIF Biological Term Annotations	1.0	null
neoplasm	GeneRIF Biological Term Annotations	1.0	null
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.943316
mir1425p	GeneRIF Biological Term Annotations	1.0	null
chromosomal part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.231672
SIRT6_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_K562_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cgd	GeneRIF Biological Term Annotations	1.0	null
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.18211
parasitic helminthiasis infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.069979
lymph	GeneRIF Biological Term Annotations	1.0	null
viral replication complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.295119
abnormal leukocyte cell number	MPO Gene-Phenotype Associations	1.0	null
artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.227707
CTCF_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
il4activated	GeneRIF Biological Term Annotations	1.0	null
blood	GeneRIF Biological Term Annotations	1.0	null
parasitic infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.05449
cell junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.230601
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.170629
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
reduced	GeneRIF Biological Term Annotations	1.0	null
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40437
hepatocellular carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.506507
MECOM	ChEA Transcription Factor Targets	1.0	null
CAL-85-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.14311
Hematopoietic Stem Cell Differentiation(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
posttranscriptional	GeneRIF Biological Term Annotations	1.0	null
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.892073
POLR2A_GM12878_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Prenatal Exposure Delayed Effects	CTD Gene-Disease Associations	1.0	1.01966
cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.459751
SPI1	ENCODE Transcription Factor Targets	1.0	null
monocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.648127
exposure	GeneRIF Biological Term Annotations	1.0	null
abnormal cell-mediated immunity	MPO Gene-Phenotype Associations	1.0	null
eGFP-GATA2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH520	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58597
selective	GeneRIF Biological Term Annotations	1.0	null
diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.184424
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.479047
gastric cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.137627
NCI-H3122	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.12964
evidence	GeneRIF Biological Term Annotations	1.0	null
glycation	GeneRIF Biological Term Annotations	1.0	null
MAZ	ENCODE Transcription Factor Targets	1.0	null
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051982
esophageal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.101839
H3K9me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
increased granulocyte number	MPO Gene-Phenotype Associations	1.0	null
MXI1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
supports	GeneRIF Biological Term Annotations	1.0	null
increased hematopoietic cell number	MPO Gene-Phenotype Associations	1.0	null
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.77118
erythroid	GeneRIF Biological Term Annotations	1.0	null
offer	GeneRIF Biological Term Annotations	1.0	null
detection	GeneRIF Biological Term Annotations	1.0	null
fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059083
GATA1	ChEA Transcription Factor Targets	1.0	null
infection	GeneRIF Biological Term Annotations	1.0	null
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.977403
blast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.292436
influenced	GeneRIF Biological Term Annotations	1.0	null
mir494	GeneRIF Biological Term Annotations	1.0	null
abnormal myeloid leukocyte morphology	MPO Gene-Phenotype Associations	1.0	null
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
abnormal immune cell physiology	MPO Gene-Phenotype Associations	1.0	null
H3K4me3_GM12865_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
splicing	GeneRIF Biological Term Annotations	1.0	null
controls	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_spleen_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
EZH2_B cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_Mobilized CD34 Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CHD2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lung inflammation	MGI Mouse Phenotype Associations 2023	1.0	null
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.12445
HMGN3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
dbdb	GeneRIF Biological Term Annotations	1.0	null
HCFC1	ENCODE Transcription Factor Targets	1.0	null
tendon sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.251279
proliferaion	GeneRIF Biological Term Annotations	1.0	null
ambiguous	GeneRIF Biological Term Annotations	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
cases	GeneRIF Biological Term Annotations	1.0	null
HCC4006	CCLE Cell Line Gene CNV Profiles	-1.0	-1.56071
abnormal leukocyte morphology	MPO Gene-Phenotype Associations	1.0	null
mir223	GeneRIF Biological Term Annotations	1.0	null
U178	CCLE Cell Line Gene CNV Profiles	1.0	1.77044
BHT101	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40594
nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.04196
H2AFZ_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
stomach	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.101937
aggressive	GeneRIF Biological Term Annotations	1.0	null
pbmcs	GeneRIF Biological Term Annotations	1.0	null
abnormal granulocyte physiology	MGI Mouse Phenotype Associations 2023	1.0	null
BFTC905	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45398
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.316224
hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.15325
protooncogenes	GeneRIF Biological Term Annotations	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.4034
POLR2A_GM12891_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cellenriched	GeneRIF Biological Term Annotations	1.0	null
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3457
NFYB	ENCODE Transcription Factor Targets	1.0	null
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.626909
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.489057
Melanoma, Experimental	CTD Gene-Disease Associations	1.0	1.08019
nuclear	GeneRIF Biological Term Annotations	1.0	null
ect2	GeneRIF Biological Term Annotations	1.0	null
SNUC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6217
viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.482464
naive	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
expressions	GeneRIF Biological Term Annotations	1.0	null
correlation	GeneRIF Biological Term Annotations	1.0	null
bone cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.237216
muscle	GeneRIF Biological Term Annotations	1.0	null
bone inflammation disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.481705
irf4	GeneRIF Biological Term Annotations	1.0	null
MDAMB361	CCLE Cell Line Gene CNV Profiles	-1.0	-1.7802
H3K4me3_HL-60_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
aberrant	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_CD14-positive monocyte_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
upregulation	GeneRIF Biological Term Annotations	1.0	null
subset	GeneRIF Biological Term Annotations	1.0	null
whole	GeneRIF Biological Term Annotations	1.0	null
concentrations	GeneRIF Biological Term Annotations	1.0	null
SNUC5	CCLE Cell Line Gene CNV Profiles	1.0	1.93487
CTCF_GM19240_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.82113
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.863865
CTCF_MCF-7_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
liver carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.503824
SIRT6	ENCODE Transcription Factor Targets	1.0	null
MFM-223	COSMIC Cell Line Gene CNV Profiles	1.0	2.14311
CHD7	ENCODE Transcription Factor Targets	1.0	null
kidney	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_GM12866_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
abcb1	GeneRIF Biological Term Annotations	1.0	null
noncoding	GeneRIF Biological Term Annotations	1.0	null
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.485289
croup	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.524202
finetuning	GeneRIF Biological Term Annotations	1.0	null
peripheral blood cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.2723
MYC_NB4_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
one	GeneRIF Biological Term Annotations	1.0	null
specific	GeneRIF Biological Term Annotations	1.0	null
NCIH716	CCLE Cell Line Gene CNV Profiles	-1.0	-1.78946
glioblastoma	GeneRIF Biological Term Annotations	1.0	null
RCOR1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_GM12892_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TEAD4	ENCODE Transcription Factor Targets	1.0	null
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.896093
maternal	GeneRIF Biological Term Annotations	1.0	null
CHD7_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
19895320-Table2	GeneSigDB Published Gene Signatures	1.0	null
lymphoblastic	GeneRIF Biological Term Annotations	1.0	null
abnormal hematopoietic system morphology/development	MPO Gene-Phenotype Associations	1.0	null
myelofibrosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.175679
facioscapulohumeral muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.205585
H3K4me1_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
POLR2AphosphoS5_GM12892_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
stathmin1	GeneRIF Biological Term Annotations	1.0	null
metastasis	GeneRIF Biological Term Annotations	1.0	null
STAT5A	ENCODE Transcription Factor Targets	1.0	null
p53	GeneRIF Biological Term Annotations	1.0	null
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mirnas	GeneRIF Biological Term Annotations	1.0	null
tal1	GeneRIF Biological Term Annotations	1.0	null
mycosis	GeneRIF Biological Term Annotations	1.0	null
acting	GeneRIF Biological Term Annotations	1.0	null
lineage	GeneRIF Biological Term Annotations	1.0	null
lymphoblastic leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.02018
mir223ptbp2	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_bone marrow macrophage_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
ZC3H11A	ENCODE Transcription Factor Targets	1.0	null
extranodal	GeneRIF Biological Term Annotations	1.0	null
astrocytoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.298524
higher	GeneRIF Biological Term Annotations	1.0	null
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.59877
SMC3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
foxo1	GeneRIF Biological Term Annotations	1.0	null
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
poor	GeneRIF Biological Term Annotations	1.0	null
lymphoid	GeneRIF Biological Term Annotations	1.0	null
putative	GeneRIF Biological Term Annotations	1.0	null
mir223nfia	GeneRIF Biological Term Annotations	1.0	null
increased acute inflammation	MPO Gene-Phenotype Associations	1.0	null
POLR2A_K562_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SRF_GM12878_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
clopidogrel	GeneRIF Biological Term Annotations	1.0	null
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.222699
TAF1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cd4	GeneRIF Biological Term Annotations	1.0	null
talls	GeneRIF Biological Term Annotations	1.0	null
targets	GeneRIF Biological Term Annotations	1.0	null
bone cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.236332
binds	GeneRIF Biological Term Annotations	1.0	null
their	GeneRIF Biological Term Annotations	1.0	null
miRNAs involved in DNA damage response(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
transplants	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_megakaryocyte_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir145	GeneRIF Biological Term Annotations	1.0	null
esophageal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.083984
inhibited	GeneRIF Biological Term Annotations	1.0	null
overexpressing	GeneRIF Biological Term Annotations	1.0	null
tissues	GeneRIF Biological Term Annotations	1.0	null
glia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057854
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	1.52693
activated	GeneRIF Biological Term Annotations	1.0	null
SPI1_HL-60_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
displays	GeneRIF Biological Term Annotations	1.0	null
nuclear chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.193719
delivery	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
bone marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.415053
MXI1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.944141
RERFLCAD1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34181
CTCFL_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
reporter	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17834
H3K9ac_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K9ac_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
even	GeneRIF Biological Term Annotations	1.0	null
downmodulation	GeneRIF Biological Term Annotations	1.0	null
importance	GeneRIF Biological Term Annotations	1.0	null
HMGN3	ENCODE Transcription Factor Targets	1.0	null
noncancerous	GeneRIF Biological Term Annotations	1.0	null
stability	GeneRIF Biological Term Annotations	1.0	null
heart	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.366381
smooth	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM12892_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.631931
suggesting	GeneRIF Biological Term Annotations	1.0	null
rheumatoid	GeneRIF Biological Term Annotations	1.0	null
studies	GeneRIF Biological Term Annotations	1.0	null
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.560847
miR-targeted genes in lymphocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
features	GeneRIF Biological Term Annotations	1.0	null
astroglial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069332
synovial tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.333396
overexpressed	GeneRIF Biological Term Annotations	1.0	null
H3K9me1_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_GM12878_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_megakaryocyte_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
memory	GeneRIF Biological Term Annotations	1.0	null
U2OS	CCLE Cell Line Gene CNV Profiles	1.0	1.45004
b-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.708041
effects	GeneRIF Biological Term Annotations	1.0	null
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.70807
chronic meningitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.460129
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05063
H2AFZ_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
increase	GeneRIF Biological Term Annotations	1.0	null
hepatobiliary disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.27687
EP300_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SPI1_HL-60_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EZH2_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
anchoring junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.254017
plateletreleased	GeneRIF Biological Term Annotations	1.0	null
hsp90b1	GeneRIF Biological Term Annotations	1.0	null
myeloid leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.314409
hematopoietic	GeneRIF Biological Term Annotations	1.0	null
astroglia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068801
POLR2AphosphoS5_GM12891_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_GM12892_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MYC_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
20448109-Table1b	GeneSigDB Published Gene Signatures	1.0	null
H3K4me3_B cell_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
chronic	GeneRIF Biological Term Annotations	1.0	null
conclusion	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_bone marrow macrophage_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
uniformly	GeneRIF Biological Term Annotations	1.0	null
represent	GeneRIF Biological Term Annotations	1.0	null
shock	GeneRIF Biological Term Annotations	1.0	null
SPI1_GM12891_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hepatitis b	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.480945
iga	GeneRIF Biological Term Annotations	1.0	null
CCNT2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
upregulating	GeneRIF Biological Term Annotations	1.0	null
glial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05805
abnormal innate immunity	MPO Gene-Phenotype Associations	1.0	null
superficial temporal artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.587629
SKMES1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71686
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.594451
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24091
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848094
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.292527
addition	GeneRIF Biological Term Annotations	1.0	null
musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.506123
RBBP5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAX_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06864
MTA3	ENCODE Transcription Factor Targets	1.0	null
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.926962
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19228
abnormal blood cell morphology/development	MPO Gene-Phenotype Associations	1.0	null
mir375	GeneRIF Biological Term Annotations	1.0	null
invasion	GeneRIF Biological Term Annotations	1.0	null
fbxw7hcdc4	GeneRIF Biological Term Annotations	1.0	null
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.88166
abnormal granulocyte differentiation	MPO Gene-Phenotype Associations	1.0	null
H3K4me3_NB4_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
overexpression	GeneRIF Biological Term Annotations	1.0	null
tendon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.158299
H3K4me3_megakaryocyte_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
t-cell leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.296571
expansion	GeneRIF Biological Term Annotations	1.0	null
SQ1	CCLE Cell Line Gene CNV Profiles	1.0	1.35649
srbi	GeneRIF Biological Term Annotations	1.0	null
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051347
central element	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.02231
renal glomerulus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.127842
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
nlrp3 inflammasome complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.705714
MAFK_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal neutrophil morphology	MPO Gene-Phenotype Associations	1.0	null
myeloidspecific	GeneRIF Biological Term Annotations	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.40064
H3K9ac_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mir20a	GeneRIF Biological Term Annotations	1.0	null
proteasome complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.160456
pathogenesis	GeneRIF Biological Term Annotations	1.0	null
hep-g2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.239307
therapy	GeneRIF Biological Term Annotations	1.0	null
RBBP5	ENCODE Transcription Factor Targets	1.0	null
andor	GeneRIF Biological Term Annotations	1.0	null
CUX1	ENCODE Transcription Factor Targets	1.0	null
prognostic	GeneRIF Biological Term Annotations	1.0	null
ZMIZ1	ENCODE Transcription Factor Targets	1.0	null
spinal cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05588
host cell nuclear part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.295119
infiltrates	GeneRIF Biological Term Annotations	1.0	null
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19244
mir185	GeneRIF Biological Term Annotations	1.0	null
cftr	GeneRIF Biological Term Annotations	1.0	null
demonstrated	GeneRIF Biological Term Annotations	1.0	null
adult t-cell leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.378514
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04535
cebpbeta	GeneRIF Biological Term Annotations	1.0	null
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05804
subtypes	GeneRIF Biological Term Annotations	1.0	null
pregnancy	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_MEL cell line_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
central	GeneRIF Biological Term Annotations	1.0	null
adult t-cell lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.243918
adenocarcinoma	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_HL-60_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SCABER	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
KE39	CCLE Cell Line Gene CNV Profiles	-1.0	-2.09288
apoptotic body	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.337751
epithelium	GeneRIF Biological Term Annotations	1.0	null
abnormal myeloblast morphology/development	MPO Gene-Phenotype Associations	1.0	null
esophageal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.291898
mature b-cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.124118
tumour	GeneRIF Biological Term Annotations	1.0	null
neuroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058152
POLR2A_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
plasma	GeneRIF Biological Term Annotations	1.0	null
bcell	GeneRIF Biological Term Annotations	1.0	null
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.895325
muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.06919
disorders	GeneRIF Biological Term Annotations	1.0	null
MAFF	ENCODE Transcription Factor Targets	1.0	null
ATR_KD_GSE54268_664_human_MCF-10A	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01448
increased inflammatory response	MPO Gene-Phenotype Associations	1.0	null
YD38	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52587
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.27519
CTCF_K562_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulated	GeneRIF Biological Term Annotations	1.0	null
intracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.170629
relationship	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM06990_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
differential	GeneRIF Biological Term Annotations	1.0	null
mature t-cell and nk-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.14182
lung	GeneRIF Biological Term Annotations	1.0	null
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848094
H3K4me3_Jurkat_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
nuclear part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.054002
Inflammation	CTD Gene-Disease Associations	1.0	1.43946
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.40247
complementary	GeneRIF Biological Term Annotations	1.0	null
bronchial	GeneRIF Biological Term Annotations	1.0	null
hepatoma	GeneRIF Biological Term Annotations	1.0	null
diagnostic	GeneRIF Biological Term Annotations	1.0	null
acute myeloid leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.848307
fbw7	GeneRIF Biological Term Annotations	1.0	null
level	GeneRIF Biological Term Annotations	1.0	null
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.841156
furthermore	GeneRIF Biological Term Annotations	1.0	null
squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.483985
15284443-Table6	GeneSigDB Published Gene Signatures	1.0	null
unblocking	GeneRIF Biological Term Annotations	1.0	null
SPI1	ChEA Transcription Factor Targets	1.0	null
able	GeneRIF Biological Term Annotations	1.0	null
AP-2rep	MotifMap Predicted Transcription Factor Targets	1.0	null
vitro	GeneRIF Biological Term Annotations	1.0	null
hcc	GeneRIF Biological Term Annotations	1.0	null
muscle tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.058054
JHOS4	CCLE Cell Line Gene CNV Profiles	1.0	2.20946
psoriasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.22454
glomerular	GeneRIF Biological Term Annotations	1.0	null
TAF7	ENCODE Transcription Factor Targets	1.0	null
Neoplasms	CTD Gene-Disease Associations	1.0	1.24718
production	GeneRIF Biological Term Annotations	1.0	null
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.452825
FXR	MotifMap Predicted Transcription Factor Targets	1.0	null
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051307
antiinflammatory	GeneRIF Biological Term Annotations	1.0	null
acute myeloid leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.278955
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.234302
H3K79me2_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SW1271	CCLE Cell Line Gene CNV Profiles	1.0	1.71408
gsiresistant	GeneRIF Biological Term Annotations	1.0	null
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.879949
liver cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.52729
CTCF_MCF-7_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
involves	GeneRIF Biological Term Annotations	1.0	null
virion part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.053893
cutaneous t cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.19742
sensitivity	GeneRIF Biological Term Annotations	1.0	null
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.18755
tlymphocytes	GeneRIF Biological Term Annotations	1.0	null
POLR2A_K562_hg19_9	ENCODE Transcription Factor Binding Site Profiles	1.0	null
20054351-Table2	GeneSigDB Published Gene Signatures	1.0	null
regulating	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM10266_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lm6 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.925051
MXI1	ENCODE Transcription Factor Targets	1.0	null
POLR2AphosphoS5_HL-60_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06864
H3K4me3_bone marrow_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
early	GeneRIF Biological Term Annotations	1.0	null
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.944141
negligible	GeneRIF Biological Term Annotations	1.0	null
abnormal cell differentiation	MPO Gene-Phenotype Associations	1.0	null
transplantation	GeneRIF Biological Term Annotations	1.0	null
kasumi-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.360036
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24091
functionally	GeneRIF Biological Term Annotations	1.0	null
cytochrome	GeneRIF Biological Term Annotations	1.0	null
extracellular vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.90321
IRF1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal respiratory system physiology	MPO Gene-Phenotype Associations	1.0	null
H3K9ac_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
confirmed	GeneRIF Biological Term Annotations	1.0	null
while	GeneRIF Biological Term Annotations	1.0	null
NCIH1373	CCLE Cell Line Gene CNV Profiles	1.0	1.87326
renal corpuscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.098917
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12147
reversibly	GeneRIF Biological Term Annotations	1.0	null
phenotype	GeneRIF Biological Term Annotations	1.0	null
myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.058589
such	GeneRIF Biological Term Annotations	1.0	null
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
marginal zone b-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.144134
KDM1A	ENCODE Transcription Factor Targets	1.0	null
attenuated	GeneRIF Biological Term Annotations	1.0	null
mononuclear	GeneRIF Biological Term Annotations	1.0	null
esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070418
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17834
liver cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.090858
stronger	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_B cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
impair	GeneRIF Biological Term Annotations	1.0	null
HDAC6_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_GM12878_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal bone marrow cell morphology/development	MPO Gene-Phenotype Associations	1.0	null
peripheral t-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.143723
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01535
SCLY	ChEA Transcription Factor Targets	1.0	null
TBL1XR1	ENCODE Transcription Factor Targets	1.0	null
Breast Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
gcenriched	GeneRIF Biological Term Annotations	1.0	null
cytoplasm	GeneRIF Biological Term Annotations	1.0	null
BATF_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_GM12873_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JUN	ENCODE Transcription Factor Targets	1.0	null
POLR2A_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
activating	GeneRIF Biological Term Annotations	1.0	null
19895320-Table3	GeneSigDB Published Gene Signatures	1.0	null
SPI1_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OKAJIMA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.840339
H4K20me1_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SMC3	ENCODE Transcription Factor Targets	1.0	null
fate	GeneRIF Biological Term Annotations	1.0	null
synovium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.253248
vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.450657
peripheral	GeneRIF Biological Term Annotations	1.0	null
leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.318042
HDAC1	ENCODE Transcription Factor Targets	1.0	null
HCC1395	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37429
decision	GeneRIF Biological Term Annotations	1.0	null
abnormal neutrophil cell number	MPO Gene-Phenotype Associations	1.0	null
factors	GeneRIF Biological Term Annotations	1.0	null
differentiation	GeneRIF Biological Term Annotations	1.0	null
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01007
t-lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.299601
il10	GeneRIF Biological Term Annotations	1.0	null
H3K79me2_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mammalian phenotype	MPO Gene-Phenotype Associations	1.0	null
pre-malignant neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.067133
psoriasis	GeneRIF Biological Term Annotations	1.0	null
host cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.140824
abnormal hematopoietic system physiology	MPO Gene-Phenotype Associations	1.0	null
extrinsic cardiomyopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.170299
H3K4me3_GM12878_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5339
synovium	GeneRIF Biological Term Annotations	1.0	null
downregulating	GeneRIF Biological Term Annotations	1.0	null
ZNF143	ENCODE Transcription Factor Targets	1.0	null
apoptotic	GeneRIF Biological Term Annotations	1.0	null
lymphocytic	GeneRIF Biological Term Annotations	1.0	null
than	GeneRIF Biological Term Annotations	1.0	null
immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.14857
POLR2AphosphoS5_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hdlcholesterol	GeneRIF Biological Term Annotations	1.0	null
malt	GeneRIF Biological Term Annotations	1.0	null
sera	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
promotes	GeneRIF Biological Term Annotations	1.0	null
KYSE520	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49647
cancer stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.173755
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.35222
H3K4me1_bone marrow macrophage_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
chemotherapeutic	GeneRIF Biological Term Annotations	1.0	null
20448109-Table2	GeneSigDB Published Gene Signatures	1.0	null
apoptosis	GeneRIF Biological Term Annotations	1.0	null
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.896093
downregulates	GeneRIF Biological Term Annotations	1.0	null
transported	GeneRIF Biological Term Annotations	1.0	null
BHLHE40_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MYC	ENCODE Transcription Factor Targets	1.0	null
igf1rakt	GeneRIF Biological Term Annotations	1.0	null
blood	GTEx Tissue Gene Expression Profiles	1.0	2.17631
KAT2B_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
biomarker	GeneRIF Biological Term Annotations	1.0	null
central nervous system lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.239799
H3K4me3_megakaryocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
dexamethasone_homo sapiens_gpl6244_gse20963	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
POLR2AphosphoS5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir21	GeneRIF Biological Term Annotations	1.0	null
impaired	GeneRIF Biological Term Annotations	1.0	null
ZC3H11A_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
diagnose	GeneRIF Biological Term Annotations	1.0	null
abnormal granulocyte physiology	MPO Gene-Phenotype Associations	1.0	null
HCC1187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19228
CEBPD	ENCODE Transcription Factor Targets	1.0	null
treg	GeneRIF Biological Term Annotations	1.0	null
correlated	GeneRIF Biological Term Annotations	1.0	null
targeting	GeneRIF Biological Term Annotations	1.0	null
prdm1blimp1	GeneRIF Biological Term Annotations	1.0	null
appears	GeneRIF Biological Term Annotations	1.0	null
abnormal immune system physiology	MPO Gene-Phenotype Associations	1.0	null
megakaryocytic	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_B cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
TBL1XR1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.3759
maintain	GeneRIF Biological Term Annotations	1.0	null
Fibrosis	CTD Gene-Disease Associations	1.0	1.07732
demonstrate	GeneRIF Biological Term Annotations	1.0	null
inflammasome	GeneRIF Biological Term Annotations	1.0	null
ankle joint	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.289582
provides	GeneRIF Biological Term Annotations	1.0	null
SRF_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
specifically	GeneRIF Biological Term Annotations	1.0	null
SPI1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ATF2_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.078164
mir125b5p	GeneRIF Biological Term Annotations	1.0	null
osteoarthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.296571
plasmacytoid	GeneRIF Biological Term Annotations	1.0	null
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17834
bronchoalveolar stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.67984
CTCF_HEK293_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.705949
exploitation	GeneRIF Biological Term Annotations	1.0	null
accounting	GeneRIF Biological Term Annotations	1.0	null
analyzed	GeneRIF Biological Term Annotations	1.0	null
membrane-bounded vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.063863
CTCF_K562_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
rejection	GeneRIF Biological Term Annotations	1.0	null
vulva carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.350452
exosome (rnase complex)	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.902281
presence	GeneRIF Biological Term Annotations	1.0	null
cartilage	GeneRIF Biological Term Annotations	1.0	null
stomach cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.090578
endogenously	GeneRIF Biological Term Annotations	1.0	null
CHD1	ENCODE Transcription Factor Targets	1.0	null
ischemic	GeneRIF Biological Term Annotations	1.0	null
liver	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.378748
tobacco	GeneRIF Biological Term Annotations	1.0	null
SF539	CCLE Cell Line Gene CNV Profiles	1.0	1.6216
POLR2A	ENCODE Transcription Factor Targets	1.0	null
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.10491
transcripts	GeneRIF Biological Term Annotations	1.0	null
abnormal leukopoiesis	MPO Gene-Phenotype Associations	1.0	null
Necrosis	CTD Gene-Disease Associations	1.0	1.51456
characterization	GeneRIF Biological Term Annotations	1.0	null
differentially	GeneRIF Biological Term Annotations	1.0	null
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
extracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.137957
node	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM10248_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_lung_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_GM12875_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
extracellular region part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.063574
H3K27ac_Brain Hippocampus Middle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CUX1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
multidrug	GeneRIF Biological Term Annotations	1.0	null
stable	GeneRIF Biological Term Annotations	1.0	null