association	dataset	threshold value	standardized value
nucleolar part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.520615
mir128a	GeneRIF Biological Term Annotations	1.0	null
semaphorin	GeneRIF Biological Term Annotations	1.0	null
Carcinoma, Non-Small-Cell Lung	HuGE Navigator Gene-Phenotype Associations	1.0	null
enhanced	GeneRIF Biological Term Annotations	1.0	null
regulated	GeneRIF Biological Term Annotations	1.0	null
SKRC31	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39498
enzyme	GeneRIF Biological Term Annotations	1.0	null
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.092612
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041811
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.929764
colorectal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.256568
POLR2A_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856133
helper t-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.174949
Neoplasms, Experimental	CTD Gene-Disease Associations	1.0	1.24465
Precancerous Conditions	CTD Gene-Disease Associations	1.0	1.26794
H3K4me1_embryonic fibroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
non-hodgkin lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.12893
leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.258917
apoa1	GeneRIF Biological Term Annotations	1.0	null
heterotrimeric g-protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.176305
mediated	GeneRIF Biological Term Annotations	1.0	null
reticular	GeneRIF Biological Term Annotations	1.0	null
Atherosclerosis	CTD Gene-Disease Associations	1.0	1.29471
liver cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.106303
lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.21883
lovo cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.296013
exposed	GeneRIF Biological Term Annotations	1.0	null
gpam	GeneRIF Biological Term Annotations	1.0	null
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10284
colorectal adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.269174
KNS42	CCLE Cell Line Gene CNV Profiles	1.0	1.42775
arteriosclerosis obliterans	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.671925
CTCF_fibroblast of gingiva_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.88376
mononuclear cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.085893
VMRCRCZ	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44607
germ layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061471
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
MKN-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.952852
esophagus	GTEx Tissue Gene Expression Profiles	1.0	0.995146
POLR2A_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Fetal Growth Retardation	CTD Gene-Disease Associations	1.0	1.15357
mitochondrial	GeneRIF Biological Term Annotations	1.0	null
OKAJIMA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.917818
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043613
CTCF_fibroblast of skin of abdomen_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
bronchogenic carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.341126
hepatoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.12395
sema6a	GeneRIF Biological Term Annotations	1.0	null
region	GeneRIF Biological Term Annotations	1.0	null
cd36	GeneRIF Biological Term Annotations	1.0	null
dihydropyrimidine	GeneRIF Biological Term Annotations	1.0	null
suppressor	GeneRIF Biological Term Annotations	1.0	null
Weight Loss	CTD Gene-Disease Associations	1.0	1.24935
neuron projection membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.471208
H3K36me3_keratinocyte_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_megakaryocyte_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.835541
oral squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.352598
breast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.392309
SET2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.7629
ESR1	ENCODE Transcription Factor Targets	1.0	null
nadh dehydrogenase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.476429
evaluate	GeneRIF Biological Term Annotations	1.0	null
marginal zone b-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.365193
spinal cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061629
adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.529113
myeloma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.08365
FOXA2	ENCODE Transcription Factor Targets	1.0	null
mir23b	GeneRIF Biological Term Annotations	1.0	null
TCF7	ChEA Transcription Factor Targets	1.0	null
KYSE30	CCLE Cell Line Gene CNV Profiles	1.0	1.99178
EP300	ENCODE Transcription Factor Targets	1.0	null
melanoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.133316
H3K4me1_lung_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
polymorphism	GeneRIF Biological Term Annotations	1.0	null
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
chinese	GeneRIF Biological Term Annotations	1.0	null
carbohydrate metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.189551
Cardiomyopathies	CTD Gene-Disease Associations	1.0	1.05498
HDAC1	ENCODE Transcription Factor Targets	1.0	null
H3K4me1_NT2-D1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_erythroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
hsamir27b	GeneRIF Biological Term Annotations	1.0	null
oxidative	GeneRIF Biological Term Annotations	1.0	null
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13027
nonsmall	GeneRIF Biological Term Annotations	1.0	null
mammary epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.086068
tissue	GeneRIF Biological Term Annotations	1.0	null
RH18	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34914
H3K4me3_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
Prostatic Neoplasms	CTD Gene-Disease Associations	1.0	1.25152
immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.188326
JUND_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
small nucleolar ribonucleoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.66726
CTCF_embryonic fibroblast_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054833
process	GeneRIF Biological Term Annotations	1.0	null
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.092503
oxygen	GeneRIF Biological Term Annotations	1.0	null
thoracic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.102061
induced	GeneRIF Biological Term Annotations	1.0	null
malignancy	GeneRIF Biological Term Annotations	1.0	null
neck	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066987
adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.431843
H3K36me3_CH12.LX_mm9_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
breast	GeneRIF Biological Term Annotations	1.0	null
angiogenesis	GeneRIF Biological Term Annotations	1.0	null
muscle tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050999
hormones	GeneRIF Biological Term Annotations	1.0	null
PAX5	ENCODE Transcription Factor Targets	1.0	null
Fetal Death	CTD Gene-Disease Associations	1.0	1.02485
H3K36me3_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Acute Kidney Injury	CTD Gene-Disease Associations	1.0	1.31208
PAX5_GM12878_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
oxidoreductase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.074854
breast epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.216528
one	GeneRIF Biological Term Annotations	1.0	null
abdomen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069155
POLR2AphosphoS2_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAX_A549_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Cognition Disorders	CTD Gene-Disease Associations	1.0	1.05972
Fibrosis	CTD Gene-Disease Associations	1.0	1.14438
CALU-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.834691
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.273696
OVMANA	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73341
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17408
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055556
MDAMB453	CCLE Cell Line Gene CNV Profiles	-1.0	-2.23201
Myocardial Reperfusion Injury	CTD Gene-Disease Associations	1.0	2.88009
H3K4me1_placenta_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
mir200c	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
renal	GeneRIF Biological Term Annotations	1.0	null
SNU-601	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41923
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22058
peripheral vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.196459
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55721
nuclear part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.048006
H3K36me3_BJ_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11475
JUND	ENCODE Transcription Factor Targets	1.0	null
autoactivation	GeneRIF Biological Term Annotations	1.0	null
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.918714
tumorsuppressive	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_ES-E14_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.367129
Oligospermia	CTD Gene-Disease Associations	1.0	1.52566
Chromosome Aberrations	CTD Gene-Disease Associations	1.0	1.31867
neuroblastoma	GeneRIF Biological Term Annotations	1.0	null
breast disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.108614
PEER	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63344
acat1	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02675
astroglia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068738
ecm	GeneRIF Biological Term Annotations	1.0	null
astroglial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069267
MAX	ENCODE Transcription Factor Targets	1.0	null
evidence	GeneRIF Biological Term Annotations	1.0	null
H3K79me2_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_megakaryocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.340388
Kidney Diseases	CTD Gene-Disease Associations	1.0	1.59708
brain cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058825
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.835541
drosha	GeneRIF Biological Term Annotations	1.0	null
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.973914
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.246442
esophageal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.124167
bone marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060768
Breast Neoplasms	CTD Gene-Disease Associations	1.0	1.1977
H3K4me1_megakaryocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.92291
POLR2A_A549_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.298883
vivo	GeneRIF Biological Term Annotations	1.0	null
regulating	GeneRIF Biological Term Annotations	1.0	null
extrinsic component of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.137093
esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.154329
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043555
esophageal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.28294
pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.284962
H3K27ac_H1 BMP4 Derived Mesendoderm Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052793
membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.054141
inhibition	GeneRIF Biological Term Annotations	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22495
ectopic	GeneRIF Biological Term Annotations	1.0	null
osteoclast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.192272
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042654
POLR2A_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.884843
microrna	GeneRIF Biological Term Annotations	1.0	null
upon	GeneRIF Biological Term Annotations	1.0	null
circulation	GeneRIF Biological Term Annotations	1.0	null
invasion	GeneRIF Biological Term Annotations	1.0	null
fallopian tube	GTEx Tissue Gene Expression Profiles	1.0	1.27271
efflux	GeneRIF Biological Term Annotations	1.0	null
endothelial progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.356686
cell projection part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.062556
carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.159124
research	GeneRIF Biological Term Annotations	1.0	null
FOSL2	ENCODE Transcription Factor Targets	1.0	null
critical	GeneRIF Biological Term Annotations	1.0	null
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.803205
lichen disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.25983
colonic epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.194579
H3K9ac_Colonic Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K36me3_HeLa-S3_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lichen planus	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.260891
H3K36me3_brain_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir27	GeneRIF Biological Term Annotations	1.0	null
hemophagocytic lymphohistiocytosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.175146
hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.191719
H3K36me3_kidney_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
20448109-Table2	GeneSigDB Published Gene Signatures	1.0	null
Prenatal Exposure Delayed Effects	CTD Gene-Disease Associations	1.0	1.63653
CTCF_fibroblast of the aortic adventitia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
prostate	GeneRIF Biological Term Annotations	1.0	null
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lymphoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058633
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05296
serve	GeneRIF Biological Term Annotations	1.0	null
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042026
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06012
embryonic	GeneRIF Biological Term Annotations	1.0	null
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.918714
ES-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08419
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10284
G130	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.56637
miapaca-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.232317
tongue cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.617796
CTCF_BE2C_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OVMANA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.76361
peripheral blood mononuclear cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.254239
miRNAs involved in DNA damage response(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
squamous	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_cardiac mesoderm_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MYC_MCF-7_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BCL3_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
neuroblastoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.10337
sk-n-be(2) cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.208349
cell property	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081732
Neoplasms	CTD Gene-Disease Associations	1.0	1.39198
MYC_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
rectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.137888
esophageal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.376494
CTCF_kidney_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.973914
SU.86.86	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10375
H3K36me3_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
several	GeneRIF Biological Term Annotations	1.0	null
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02675
H3K9me3_fibroblast of lung_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
more	GeneRIF Biological Term Annotations	1.0	null
tissues	GeneRIF Biological Term Annotations	1.0	null
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.475423
provide	GeneRIF Biological Term Annotations	1.0	null
19895320-Table2	GeneSigDB Published Gene Signatures	1.0	null
mammary epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.094214
HCC95	CCLE Cell Line Gene CNV Profiles	1.0	1.56976
POLR2AphosphoS5_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_retinal pigment epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_fibroblast of pedal digit skin_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15985
breast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.391931
nsclc	GeneRIF Biological Term Annotations	1.0	null
non-small cell lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.226607
H3K4me3_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
oral squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.328994
Poisoning	CTD Gene-Disease Associations	1.0	1.166
non-small cell lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.3976
H3K36me3_thymus_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.05961
layer	GeneRIF Biological Term Annotations	1.0	null
least	GeneRIF Biological Term Annotations	1.0	null
antiadipogenic	GeneRIF Biological Term Annotations	1.0	null
their	GeneRIF Biological Term Annotations	1.0	null
somite	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.189732
extrinsic component of cytoplasmic side of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.176305
myeloid progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064838
phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0685
breast cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.294223
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.323509
CAL 27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.990926
RKO-E6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08903
Lung Diseases	CTD Gene-Disease Associations	1.0	1.0241
exposure	GeneRIF Biological Term Annotations	1.0	null
atherosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.188632
heart	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.218398
revealed	GeneRIF Biological Term Annotations	1.0	null
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.952852
Inflammation	CTD Gene-Disease Associations	1.0	1.73758
H3K36me3_NT2-D1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.298165
POLR2A	ENCODE Transcription Factor Targets	1.0	null
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.09601
hep-g2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.290295
POLR2A_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15985
colorectal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.2559
CTCF_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
impaired	GeneRIF Biological Term Annotations	1.0	null
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04394
together	GeneRIF Biological Term Annotations	1.0	null
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062143
H3K36me3_G1E_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KELLY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70439
SK-MES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.835541
c6 glioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.24804
CTCF_retinal pigment epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
eGFP-FOS_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
peripheral blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.269174
targeting	GeneRIF Biological Term Annotations	1.0	null
egf	GeneRIF Biological Term Annotations	1.0	null
IGR39	CCLE Cell Line Gene CNV Profiles	1.0	1.42419
catalytic complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046127
Ovarian Neoplasms	CTD Gene-Disease Associations	1.0	1.29688
downregulated	GeneRIF Biological Term Annotations	1.0	null
CTCF_H1-hESC_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.06998
dehydrogenase	GeneRIF Biological Term Annotations	1.0	null
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.291722
H3K36me3_GM06990_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU1214	CCLE Cell Line Gene CNV Profiles	1.0	2.29123
partially	GeneRIF Biological Term Annotations	1.0	null
aberrantly	GeneRIF Biological Term Annotations	1.0	null
tongue cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.20287
ZNF263_HEK293_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
initiated	GeneRIF Biological Term Annotations	1.0	null
MAX_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KDM5B	ENCODE Transcription Factor Targets	1.0	null
t-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080115
extrinsic component of membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.115944
POLR2A_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
sense organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080603
TE14	CCLE Cell Line Gene CNV Profiles	1.0	2.71216
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.229568
CTCF_HepG2_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02675
gliomas	GeneRIF Biological Term Annotations	1.0	null
lpl	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_brain_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
satellite cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.461465
COLO 857	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01199
F36P	CCLE Cell Line Gene CNV Profiles	-1.0	-1.8983
SKES1	CCLE Cell Line Gene CNV Profiles	1.0	1.9785
KMRC2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48704
Drug-Related Side Effects and Adverse Reactions	CTD Gene-Disease Associations	1.0	1.18359
relevant	GeneRIF Biological Term Annotations	1.0	null
Edema	CTD Gene-Disease Associations	1.0	1.21402
arteriosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.175679
RAD21_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
arteriosclerotic cardiovascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.187113
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054836
H3K9ac_NT2-D1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
liver cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.122811
laryngeal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.647316
glial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065876
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.488276
whereas	GeneRIF Biological Term Annotations	1.0	null
subcutis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.324605
POLR2AphosphoS2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
part	GeneRIF Biological Term Annotations	1.0	null
Proteinuria	CTD Gene-Disease Associations	1.0	1.04239
H3K27ac_olfactory bulb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
HGC27	CCLE Cell Line Gene CNV Profiles	1.0	1.61749
NCI-H1581	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17585
th2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.260606
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056769
castration	GeneRIF Biological Term Annotations	1.0	null
TT	CCLE Cell Line Gene CNV Profiles	1.0	1.48403
CTCF_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
extracellular vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.238478
CTCF_brain microvascular endothelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
sirolimus_homo sapiens_gpl6244_gse15703	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22058
H3K18ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K4me1_bone marrow_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
lead	GeneRIF Biological Term Annotations	1.0	null
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.089697
CTCF_astrocyte of the cerebellum_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EP300_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
sp1	GeneRIF Biological Term Annotations	1.0	null
integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.054806
pancreatic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.103509
bone	GeneRIF Biological Term Annotations	1.0	null
UACC-257	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41923
pancreatic cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.264353
BCL3_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
tumors	GeneRIF Biological Term Annotations	1.0	null
MYC_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Urinary Bladder Neoplasms	CTD Gene-Disease Associations	1.0	1.24275
H3K4me1_Colonic Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
colonic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.230382
squamous epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.135189
neuron part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.066062
neck	GeneRIF Biological Term Annotations	1.0	null
derived	GeneRIF Biological Term Annotations	1.0	null
axolemma	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.472412
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.65288
bxpc-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.263669
CTCF_GM19239_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
tumorpromoting	GeneRIF Biological Term Annotations	1.0	null
pparalpha	GeneRIF Biological Term Annotations	1.0	null
blood vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.304279
cutaneous t cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.138243
subcutaneous adipose tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.351114
plasma membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.061789
leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.207578
lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059055
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053895
Carcinoma, Squamous Cell	CTD Gene-Disease Associations	1.0	1.16533
CTCF_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
tctp	GeneRIF Biological Term Annotations	1.0	null
CTCF_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAZ_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOSL2_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NR2C2	ENCODE Transcription Factor Targets	1.0	null
H3K36me3_Brain Inferior Temporal Lobe	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
side of membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.137079
H3K36me3_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9me1_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.23604
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.654618
squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.145372
tnfalpha	GeneRIF Biological Term Annotations	1.0	null
blood	GTEx Tissue Gene Expression Profiles	-1.0	-1.54181
STAT3	ENCODE Transcription Factor Targets	1.0	null
Liver Neoplasms	CTD Gene-Disease Associations	1.0	1.52693
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.834691
polycystic	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_H1 Derived Neuronal Progenitor Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
colonic cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.230656
H3K4me1_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
intestinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.187415
downregulation	GeneRIF Biological Term Annotations	1.0	null
extracellular region part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044782
JIMT1	CCLE Cell Line Gene CNV Profiles	1.0	1.64174
CTCF_bronchial epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
extracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.238478
melanoma	GeneRIF Biological Term Annotations	1.0	null
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.80274
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1304
thorax	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.401386
tsp1	GeneRIF Biological Term Annotations	1.0	null
mir210	GeneRIF Biological Term Annotations	1.0	null
suppressors	GeneRIF Biological Term Annotations	1.0	null
HS746T	CCLE Cell Line Gene CNV Profiles	1.0	2.80459
ets_00000000_2008_ovarian_cancer_cells_gof_human_gpl6244_gse21129	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.227372
hematopoietic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.220604
LXFL529	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41616
FOXA2_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.02446
Fatty Liver	CTD Gene-Disease Associations	1.0	1.37705
H3K36me3_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Cell Transformation, Neoplastic	CTD Gene-Disease Associations	1.0	1.67376
Lung Neoplasms	CTD Gene-Disease Associations	1.0	1.09716
H3K36me3_heart_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
epidermal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.268482
mir130a	GeneRIF Biological Term Annotations	1.0	null
species	GeneRIF Biological Term Annotations	1.0	null
metastatic	GeneRIF Biological Term Annotations	1.0	null
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.341272
lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.111722
endocrine pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.089616
skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.056126
osteogenic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.095513
membrane-bounded vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.050201
adipose-derived stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.28887
blood cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055071
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1304
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.238406
effects	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_keratinocyte_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HDAC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GB1	CCLE Cell Line Gene CNV Profiles	1.0	2.18353
TP63-22573176-HFKS-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
acquired metabolic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.167682
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10375
blood vessel	GTEx Tissue Gene Expression Profiles	1.0	1.03448
dexamethasone_homo sapiens_gpl6244_gse20963	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
MYC_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.91709
anaplastic large cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.159302
artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.06684
cell projection membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.116667
ZNF263	ENCODE Transcription Factor Targets	1.0	null
MicroRNAs in cardiomyocyte hypertrophy(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
NCIH2228	CCLE Cell Line Gene CNV Profiles	1.0	1.43719
overexpression	GeneRIF Biological Term Annotations	1.0	null
mir21	GeneRIF Biological Term Annotations	1.0	null
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042881
muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050377
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	2.88009
ESR1_ECC-1_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
skin stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.477756
tnfalphainduced	GeneRIF Biological Term Annotations	1.0	null
splenic marginal zone lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.53928
environment	GeneRIF Biological Term Annotations	1.0	null
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.330589
head	GeneRIF Biological Term Annotations	1.0	null
20028859-Table2	GeneSigDB Published Gene Signatures	1.0	null
EFO-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62303
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
POLR2AphosphoS5_neural cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
antitumor	GeneRIF Biological Term Annotations	1.0	null
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02863
invasive	GeneRIF Biological Term Annotations	1.0	null
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061036
vegfc	GeneRIF Biological Term Annotations	1.0	null
cytoplasmic side of membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.176024
rs10719tc	GeneRIF Biological Term Annotations	1.0	null
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27884
stress	GeneRIF Biological Term Annotations	1.0	null
biomarkers	GeneRIF Biological Term Annotations	1.0	null
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.952852
Nerve Degeneration	CTD Gene-Disease Associations	1.0	1.14336
respectively	GeneRIF Biological Term Annotations	1.0	null
sk-mel-28 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.549709
H3K36me3_small intestine_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
suppressed	GeneRIF Biological Term Annotations	1.0	null
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.424199
MAZ	ENCODE Transcription Factor Targets	1.0	null
MEWO	CCLE Cell Line Gene CNV Profiles	-1.0	-2.02324
H3K36me3_bronchial epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Lung Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
followed	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_G1E_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
extracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.121088
ovary	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cholesterol	GeneRIF Biological Term Annotations	1.0	null
colonic	GeneRIF Biological Term Annotations	1.0	null
mononuclear phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07443
CTCF_fibroblast of upper leg skin_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KYSE-450	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.87228
SNU1076	CCLE Cell Line Gene CNV Profiles	1.0	1.92546
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13174
glioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074667
POLR2AphosphoS5_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02951
tongue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.191515
glia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06549
large intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.189859
reversed	GeneRIF Biological Term Annotations	1.0	null
POLR2A_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_erythroblast_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
glioma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.085629
peripheral t-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.132428
lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.189551
KDM5B_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_cardiac mesoderm_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
biogenesis	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22058
H3K36me3_Pancreatic Islets	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
20086245-Table2a	GeneSigDB Published Gene Signatures	1.0	null
than	GeneRIF Biological Term Annotations	1.0	null
normal	GeneRIF Biological Term Annotations	1.0	null
allergic contact dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.308118
H3K36me3_ES-Bruce4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
risk	GeneRIF Biological Term Annotations	1.0	null
biomarker	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_fibroblast of upper leg skin_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.835541
CTCF_brain microvascular endothelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
damage	GeneRIF Biological Term Annotations	1.0	null
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.368149
pancreatic adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.097579
H3K4me1_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
endogenous progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.354455
myotonic dystrophy type 1	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.171286
COLO 853	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.941152
HS 746T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.99356
POLR2A_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22058
mir27ab	GeneRIF Biological Term Annotations	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
upregulated	GeneRIF Biological Term Annotations	1.0	null
esophageal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.284253
mewo cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.61941
H3K4me1_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
suggesting	GeneRIF Biological Term Annotations	1.0	null
circulating	GeneRIF Biological Term Annotations	1.0	null
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.834691
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57565
MEL-HO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2148
rectal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.2559
CHK1_KD_GSE54268_665_human_MCF-10A	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
WHSC1	ENCODE Transcription Factor Targets	1.0	null
epidermal stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.530693
vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.049629
neuroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058125
Prenatal Injuries	CTD Gene-Disease Associations	1.0	1.09154
type	GeneRIF Biological Term Annotations	1.0	null
exosome (rnase complex)	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.238119
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.863027
chondrocytes	GeneRIF Biological Term Annotations	1.0	null
huh-7 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.02206
colorectal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.190168
plhc-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.214576
H3K9ac_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
due	GeneRIF Biological Term Annotations	1.0	null
Carcinoma, Hepatocellular	CTD Gene-Disease Associations	1.0	1.37817
OVKATE	CCLE Cell Line Gene CNV Profiles	1.0	1.5128
useful	GeneRIF Biological Term Annotations	1.0	null
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.261624
POLR2AphosphoS2_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ribonucleoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.068944
epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.409351
H3K36me3_CH12.LX_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
decay	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_spleen_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
therapy	GeneRIF Biological Term Annotations	1.0	null
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.918714
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05161
oral cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.294939
rna	GeneRIF Biological Term Annotations	1.0	null
emt	GeneRIF Biological Term Annotations	1.0	null
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.593247
POLR2A_heart_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
dna	GeneRIF Biological Term Annotations	1.0	null
CTCF_HEK293_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
colorectal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.13392
diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.218715
TCF7-22412390-EML-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
throat	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071735
including	GeneRIF Biological Term Annotations	1.0	null
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.835541
mir27a	GeneRIF Biological Term Annotations	1.0	null
MKN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02675
TCF12_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mice	GeneRIF Biological Term Annotations	1.0	null
NKX3-2	JASPAR Predicted Transcription Factor Targets	1.0	null
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.00896
H3K27ac_iPS DF 19.11	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27796
POLR2A_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55721
Hypertension	CTD Gene-Disease Associations	1.0	1.02114
H3K4me1_limb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_splenic B cell_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.835541
epithelial	GeneRIF Biological Term Annotations	1.0	null
axon part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.095774
H3K36me3_U2OS_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
reactive	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_testis_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21393
be(2)-m17 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.952978
esophageal squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.377245
H3K36me3_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.00896
POLR2A_MCF-7_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
promonocytic leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.23604
Uterine Cervical Neoplasms	CTD Gene-Disease Associations	1.0	1.22145
EZH2	ENCODE Transcription Factor Targets	1.0	null
sex	GeneRIF Biological Term Annotations	1.0	null
BCL3	ENCODE Transcription Factor Targets	1.0	null
altered	GeneRIF Biological Term Annotations	1.0	null
muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.091814
POLR2A_HGPS cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_HeLa-S3_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hepatocyte	GeneRIF Biological Term Annotations	1.0	null
colonic epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.178487
EOL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.8983
H3K4me1_brown adipose tissue_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
vitro	GeneRIF Biological Term Annotations	1.0	null
stem	GeneRIF Biological Term Annotations	1.0	null
TCF12	ENCODE Transcription Factor Targets	1.0	null
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05297
astroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069267
blast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062624
seedling	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061503
vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.165001
WHSC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
colorectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.13217
inflammatory	GeneRIF Biological Term Annotations	1.0	null
SCC-25	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3706
bone cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056403
musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042408
astrocytoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.297089
messenger	GeneRIF Biological Term Annotations	1.0	null
breast adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.33744
H3K4me1_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
glial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061658
Liver Neoplasms, Experimental	CTD Gene-Disease Associations	1.0	1.44409
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.588832
abdominal adipose tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.270909
a2bar	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS2_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
obliterans	GeneRIF Biological Term Annotations	1.0	null
affects	GeneRIF Biological Term Annotations	1.0	null
WM983B	CCLE Cell Line Gene CNV Profiles	1.0	1.49451
increase	GeneRIF Biological Term Annotations	1.0	null
oral cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.183946
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.64461
H3K36me3_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
clear	GeneRIF Biological Term Annotations	1.0	null
influx	GeneRIF Biological Term Annotations	1.0	null
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.088182
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.395331
Infertility, Male	CTD Gene-Disease Associations	1.0	1.2509
SET-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.92391
Memory Disorders	CTD Gene-Disease Associations	1.0	1.19509
healing	GeneRIF Biological Term Annotations	1.0	null
mir23b27b	GeneRIF Biological Term Annotations	1.0	null
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.108549
esterification	GeneRIF Biological Term Annotations	1.0	null
HCC38	CCLE Cell Line Gene CNV Profiles	1.0	1.99966
myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051336
sk-mel cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.498048
SK-CO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.55802
U-698-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.20376
hematopoietic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062901
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05287
targeted	GeneRIF Biological Term Annotations	1.0	null
H3K9ac_Brain Cingulate Gyrus	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
A-427	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15985
pancreatic beta cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.244232
NR2C2_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
bone marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061181
pancreatic islet	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.092213
wound	GeneRIF Biological Term Annotations	1.0	null
astrocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069826
skin cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.127505
melanoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.221755
extracellular vesicular exosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.238478
vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.338545
Neural Tube Defects	CTD Gene-Disease Associations	1.0	1.27316
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045167
necrosis	GeneRIF Biological Term Annotations	1.0	null
tongue cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.613361
macrophage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.077709
lps	GeneRIF Biological Term Annotations	1.0	null
syndrome	GeneRIF Biological Term Annotations	1.0	null
CTCF_bronchial epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
dermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.138667
CTCF_BJ_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.88376
NCIH1793	CCLE Cell Line Gene CNV Profiles	1.0	1.33604
huh7	GeneRIF Biological Term Annotations	1.0	null
MEWO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.87356
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
H3K36me3_BJ_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
finding	GeneRIF Biological Term Annotations	1.0	null
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15985
mammary epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.08845
JURLMK1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76931
pharmacologically	GeneRIF Biological Term Annotations	1.0	null
STAT3_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.834691
RKO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08903
POLR2A_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
leading edge membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.462398
PE/CA-PJ15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78885
sk-mel-5 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.843706
level	GeneRIF Biological Term Annotations	1.0	null
stage	GeneRIF Biological Term Annotations	1.0	null
colonic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.119201
melanocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.288158
mir221222	GeneRIF Biological Term Annotations	1.0	null
mmp13	GeneRIF Biological Term Annotations	1.0	null
liver	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of pedal digit skin_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
ME1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.36451
osteoclastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.247079
effect	GeneRIF Biological Term Annotations	1.0	null
glucose metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.189551
Hyperplasia	CTD Gene-Disease Associations	1.0	1.4087
head and neck squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.499615
ppargamma	GeneRIF Biological Term Annotations	1.0	null
population	GeneRIF Biological Term Annotations	1.0	null
mastitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.195501
periosteum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.092563
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17408
H3K27ac_brown adipose tissue_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.884843
marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065217
H3K4me1_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
KO52	CCLE Cell Line Gene CNV Profiles	-1.0	-2.68208
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.308251
peritoneal cavity	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.184803
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.6018
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.02613
squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.36526
SKM1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50641
miR-targeted genes in muscle cell - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
CTCF_WERI-Rb-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intestinal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.141874
CTCF_GM06990_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.055905
POLR2A_HepG2_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
angiogenic	GeneRIF Biological Term Annotations	1.0	null
degradation	GeneRIF Biological Term Annotations	1.0	null
DANG	CCLE Cell Line Gene CNV Profiles	1.0	1.64294
mature t-cell and nk-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.125842
EZH2_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
diabetic	GeneRIF Biological Term Annotations	1.0	null
ls-180 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.56603
H3K27ac_limb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
POLR2A_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15985
H3K4me1_Neurosphere Cultured Cells Cortex Derived	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.306805
NCIH2030	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43629
angptl3	GeneRIF Biological Term Annotations	1.0	null
SNU601	CCLE Cell Line Gene CNV Profiles	-1.0	-2.74531
influence	GeneRIF Biological Term Annotations	1.0	null
therapeutic	GeneRIF Biological Term Annotations	1.0	null
miR-targeted genes in epithelium - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.610943
H3K36me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
line	GeneRIF Biological Term Annotations	1.0	null
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052973
H3K4me1_bone marrow macrophage_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058733
blood vessel endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.362273
POLR2A_A549_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
breast cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079556
improves	GeneRIF Biological Term Annotations	1.0	null
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.80936
interactions	GeneRIF Biological Term Annotations	1.0	null
hmads	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RAD21_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.893359
FOXO1_01_321	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	1.00911
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.451428
15284443-Table6	GeneSigDB Published Gene Signatures	1.0	null
immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042423
key	GeneRIF Biological Term Annotations	1.0	null
resistant	GeneRIF Biological Term Annotations	1.0	null
JIMT-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.06117
demonstrated	GeneRIF Biological Term Annotations	1.0	null
Cholestasis	CTD Gene-Disease Associations	1.0	2.88009
gastrointestinal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.108623
oncogenic	GeneRIF Biological Term Annotations	1.0	null
SKM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.64365
obesity	GeneRIF Biological Term Annotations	1.0	null
abca1	GeneRIF Biological Term Annotations	1.0	null
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.214576
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20292
carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.463787
H3K36me3_cardiac mesoderm_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
taken	GeneRIF Biological Term Annotations	1.0	null
CTCF_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
sprout	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.416957
bone marrow cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07107
SNU-484	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.863027
mesoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071535
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.111947
H3K4me2_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056724
miR-targeted genes in adipocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.192344
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059725
MYC	ENCODE Transcription Factor Targets	1.0	null
pancreatic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.256234
functions	GeneRIF Biological Term Annotations	1.0	null
colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.124991
MAX_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
leukemia	GeneRIF Biological Term Annotations	1.0	null
lymphatic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.204923
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02951
oral	GeneRIF Biological Term Annotations	1.0	null
Hepatomegaly	CTD Gene-Disease Associations	1.0	1.27409
H3K36me3_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir27b	GeneRIF Biological Term Annotations	1.0	null
RAD21	ENCODE Transcription Factor Targets	1.0	null
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.65543
serum	GeneRIF Biological Term Annotations	1.0	null
diabetic angiopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.796232
myotome	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.376119
death	GeneRIF Biological Term Annotations	1.0	null
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.443547
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43026
mycosis fungoides	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.222479
box c/d snornp complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.20447
Liver Diseases	CTD Gene-Disease Associations	1.0	1.03715
rectal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.2559
colonic adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081419
her2neu	GeneRIF Biological Term Annotations	1.0	null
NCI-H2228	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20292
b-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.126081
rescues	GeneRIF Biological Term Annotations	1.0	null
mirnas	GeneRIF Biological Term Annotations	1.0	null
plant form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058506
colonic epithelium cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.550503
Learning Disorders	CTD Gene-Disease Associations	1.0	1.26794
hydrolysis	GeneRIF Biological Term Annotations	1.0	null
KYO1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50922
CTCF_GM12873_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
analyses	GeneRIF Biological Term Annotations	1.0	null
larynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.149653
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.461078
cellular	GeneRIF Biological Term Annotations	1.0	null
early	GeneRIF Biological Term Annotations	1.0	null
intestinal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.223419
SKMEL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34852
BV173	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61865
CAL27	CCLE Cell Line Gene CNV Profiles	1.0	1.49723
macroglia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064672
olp	GeneRIF Biological Term Annotations	1.0	null
atherosclerosis	GeneRIF Biological Term Annotations	1.0	null
hepatoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.470375
liver	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.233446
peripheral blood cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.250627
inhibitor	GeneRIF Biological Term Annotations	1.0	null
content	GeneRIF Biological Term Annotations	1.0	null
20028859-TableS2	GeneSigDB Published Gene Signatures	1.0	null
decreased	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_G1E_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.92805
bladder	GeneRIF Biological Term Annotations	1.0	null
POLR2A_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Necrosis	CTD Gene-Disease Associations	1.0	1.67761
15284443-Table5	GeneSigDB Published Gene Signatures	1.0	null
TP63	ChEA Transcription Factor Targets	1.0	null
castrationresistant	GeneRIF Biological Term Annotations	1.0	null
ppargamma1	GeneRIF Biological Term Annotations	1.0	null
modulators	GeneRIF Biological Term Annotations	1.0	null
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.940054
hgf	GeneRIF Biological Term Annotations	1.0	null
contribute	GeneRIF Biological Term Annotations	1.0	null
hmepc cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.218398
H3K4me1_megakaryocyte_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
JEKO1	CCLE Cell Line Gene CNV Profiles	1.0	1.66769
Urinary Bladder Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
BICR 78	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31806
monocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075436
CTCF_GM12871_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PECAPJ15	CCLE Cell Line Gene CNV Profiles	1.0	1.75768
lung	GeneRIF Biological Term Annotations	1.0	null
POLR2A_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
neuroblastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.09886
lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.079563
main axon	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.253653
triggers	GeneRIF Biological Term Annotations	1.0	null
ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066886
cytoplasmic side of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.176024
esophageal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.358546
inhibiting	GeneRIF Biological Term Annotations	1.0	null
u-937 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.23604
keratinocyte	GeneRIF Biological Term Annotations	1.0	null
cal-27 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.17136
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41923
Adenocarcinoma	CTD Gene-Disease Associations	1.0	1.22112
myeloid	GeneRIF Biological Term Annotations	1.0	null
factors	GeneRIF Biological Term Annotations	1.0	null
suppression	GeneRIF Biological Term Annotations	1.0	null
lipidmetabolism	GeneRIF Biological Term Annotations	1.0	null
myotonic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.162908
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.952852
large intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.123883
adipose tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.25858
aimed	GeneRIF Biological Term Annotations	1.0	null
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058634
posttranscriptionally	GeneRIF Biological Term Annotations	1.0	null
contact dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.19582
characteristics	GeneRIF Biological Term Annotations	1.0	null
eGFP-NR4A1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
20230785-Table1	GeneSigDB Published Gene Signatures	1.0	null