association	dataset	threshold value	standardized value
NUGC4	CCLE Cell Line Gene CNV Profiles	1.0	1.61987
viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.052039
MAFK_IMR-90_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054286
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03779
EZH2_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1047
ABC1	CCLE Cell Line Gene CNV Profiles	1.0	1.45384
central nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044711
bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.281776
COLO 201	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971566
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.630027
members	GeneRIF Biological Term Annotations	1.0	null
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051194
Prenatal Exposure Delayed Effects	CTD Gene-Disease Associations	1.0	1.07553
H3K27me3_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SKBR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43771
H3K36me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HDAC6	ENCODE Transcription Factor Targets	1.0	null
peripheral blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.085901
revealing	GeneRIF Biological Term Annotations	1.0	null
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052232
POLR2AphosphoS5_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
shsow	GeneRIF Biological Term Annotations	1.0	null
BACH1	ENCODE Transcription Factor Targets	1.0	null
mir137	GeneRIF Biological Term Annotations	1.0	null
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.88943
immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042441
SQ1	CCLE Cell Line Gene CNV Profiles	1.0	1.35987
uterine	GeneRIF Biological Term Annotations	1.0	null
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35582
NCIH1385	CCLE Cell Line Gene CNV Profiles	1.0	1.35451
mbp1	GeneRIF Biological Term Annotations	1.0	null
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.972342
squamous epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.076109
BHT101	CCLE Cell Line Gene CNV Profiles	1.0	1.76672
part	GeneRIF Biological Term Annotations	1.0	null
smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060267
STAT3_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RH30	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36698
BACH1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
shown	GeneRIF Biological Term Annotations	1.0	null
esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.09525
GSS	CCLE Cell Line Gene CNV Profiles	-1.0	-2.35043
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.978258
BEN	CCLE Cell Line Gene CNV Profiles	1.0	1.68328
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055968
stomach	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.115633
targeting	GeneRIF Biological Term Annotations	1.0	null
LCLC-97TM1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.82775
ecspecific	GeneRIF Biological Term Annotations	1.0	null
JMSU1	CCLE Cell Line Gene CNV Profiles	1.0	1.40028
epidermal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067897
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08902
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51007
H3K4me3_cardiac mesoderm_hg19_4	ENCODE Histone Modification Site Profiles	1.0	null
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067152
CGTHW1	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
oral epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.472315
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
colorectal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.282483
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.606933
adipogenesis	GeneRIF Biological Term Annotations	1.0	null
SOX4	MotifMap Predicted Transcription Factor Targets	1.0	null
trophoblast	GeneRIF Biological Term Annotations	1.0	null
HCC89	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15154
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069598
CTCF	ENCODE Transcription Factor Targets	1.0	null
H4K20me1_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
regulator	GeneRIF Biological Term Annotations	1.0	null
regulated	GeneRIF Biological Term Annotations	1.0	null
NCIH929	CCLE Cell Line Gene CNV Profiles	1.0	1.40489
transition	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_cardiac mesoderm_hg19_8	ENCODE Transcription Factor Binding Site Profiles	1.0	null
negative	GeneRIF Biological Term Annotations	1.0	null
KE39	CCLE Cell Line Gene CNV Profiles	1.0	1.5451
H3K9ac_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.078656
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052557
Hypertrophy	CTD Gene-Disease Associations	1.0	1.04538
TFAP2C_01_312	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	0.92487
leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051845
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.257572
sk-n-sh cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.52556
Hepatomegaly	CTD Gene-Disease Associations	1.0	1.10803
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053916
cmycregulated	GeneRIF Biological Term Annotations	1.0	null
OCIMY7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49393
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
null cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.18202
H3K27me3_Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
colorectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05704
BRCA1	JASPAR Predicted Transcription Factor Targets	1.0	null
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.980689
clonal	GeneRIF Biological Term Annotations	1.0	null
ulm	GeneRIF Biological Term Annotations	1.0	null
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20118
natural killer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.186776
acute leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.160387
least	GeneRIF Biological Term Annotations	1.0	null
MAFK_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.65426
EZH2	ENCODE Transcription Factor Targets	1.0	null
hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043414
ES-2	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.7119
SW1573	CCLE Cell Line Gene CNV Profiles	-1.0	-2.09612
uterine fibroid	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.535409
1321N1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54715
links	GeneRIF Biological Term Annotations	1.0	null
A3KAW	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46267
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	1.21791
repressing	GeneRIF Biological Term Annotations	1.0	null
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08902
adscs	GeneRIF Biological Term Annotations	1.0	null
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.8968
embryonic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.344079
HCC1599	CCLE Cell Line Gene CNV Profiles	1.0	2.36415
H3K27me3_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ES-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02115
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.980689
NCIH1781	CCLE Cell Line Gene CNV Profiles	1.0	1.59995
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
breast	GeneRIF Biological Term Annotations	1.0	null
FOS_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_H7_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19967
SW579	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60693
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58566
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.77962
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.2779
oral squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.581218
provide	GeneRIF Biological Term Annotations	1.0	null
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41323
neuroblastoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.134238
Nervous System Diseases	CTD Gene-Disease Associations	1.0	1.01852
DMS153	CCLE Cell Line Gene CNV Profiles	1.0	1.33383
myometrium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.227186
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059319
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.215534
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.277197
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.73063
IGR1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.74845
expansion	GeneRIF Biological Term Annotations	1.0	null
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90476
uterine benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.533475
mir363pdpn	GeneRIF Biological Term Annotations	1.0	null
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.88943
POLR2A_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
penis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.312232
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.538209
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45536
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.83132
squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.519961
organ system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053751
mir363	GeneRIF Biological Term Annotations	1.0	null
gastric cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.269867
EFO21	CCLE Cell Line Gene CNV Profiles	1.0	1.54925
gastric	GeneRIF Biological Term Annotations	1.0	null
20448109-Table2	GeneSigDB Published Gene Signatures	1.0	null
benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051957
reproductive organ benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.418768
EZH2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU601	CCLE Cell Line Gene CNV Profiles	1.0	1.44875
LN-229	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.85871
bone marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.216528
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.566831
HUPT4	CCLE Cell Line Gene CNV Profiles	1.0	1.88389
H3K36me3_cardiac mesoderm_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
key	GeneRIF Biological Term Annotations	1.0	null
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14103
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15021
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055613
EW8	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57418
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971566
terminal	GeneRIF Biological Term Annotations	1.0	null
RBBP5	ENCODE Transcription Factor Targets	1.0	null
gastric cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.282837
H3K36me3_ES-E14_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mitotic	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_cardiac mesoderm_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
notochord	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.514924
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.232317
H3K4me3_cardiac mesoderm_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
tumorigenicity	GeneRIF Biological Term Annotations	1.0	null
female reproductive organ benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.498849
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.544946
clinical	GeneRIF Biological Term Annotations	1.0	null
metastatic	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.832921
keratinocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.17595
uterus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057036
Cardiovascular Diseases	CTD Gene-Disease Associations	1.0	1.08196
COLO 794	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.848681
neuroblastoma	GeneRIF Biological Term Annotations	1.0	null
chickenpox	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.701526
H3K36me3_H7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
STAT3	ENCODE Transcription Factor Targets	1.0	null
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13991
H3K36me3_cardiac mesoderm_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.923618
natural killer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.644074
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.71038
H3K9ac_ES-Bruce4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K27ac_B cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.269043
cyp19a1	GeneRIF Biological Term Annotations	1.0	null
cluster	GeneRIF Biological Term Annotations	1.0	null
heretofore	GeneRIF Biological Term Annotations	1.0	null
hepatocarcinogenesis	GeneRIF Biological Term Annotations	1.0	null
EZH2_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CGTH-W-1	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.7119
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064478
keratinocyte cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.340019
viral genome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.857555
H3K4me1_kidney_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971566
gcm1	GeneRIF Biological Term Annotations	1.0	null
DMS114	CCLE Cell Line Gene CNV Profiles	-1.0	-1.421
five	GeneRIF Biological Term Annotations	1.0	null
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.844801
deregulated	GeneRIF Biological Term Annotations	1.0	null
NCIH28	CCLE Cell Line Gene CNV Profiles	1.0	1.61873
H3K36me3_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC38	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
HDAC1	ENCODE Transcription Factor Targets	1.0	null
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27643
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16122
DMS454	CCLE Cell Line Gene CNV Profiles	-1.0	-2.19877
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055292
stratum spinosum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.168188
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.543359
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081032
inhibit	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
SW1271	CCLE Cell Line Gene CNV Profiles	1.0	1.73328
mir1792	GeneRIF Biological Term Annotations	1.0	null
oral mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.236332
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056931
H3K27me3_Rectal Smooth Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
SAP30	ENCODE Transcription Factor Targets	1.0	null
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052279
H3K27me3_fibroblast of lung_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
external male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.256568
MAFK_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_H7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
neuroblastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.128338
Liver Neoplasms, Experimental	CTD Gene-Disease Associations	1.0	1.01739
H3K36me3_NT2-D1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.337608
EZH2_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28676
carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.361133
previously	GeneRIF Biological Term Annotations	1.0	null
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062934
MDAMB361	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70645
A172	CCLE Cell Line Gene CNV Profiles	-1.0	-1.90698
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.10577
H3K4me3_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ES2	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
numerous	GeneRIF Biological Term Annotations	1.0	null
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.95271
limb bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.421529
SAP30_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
studies	GeneRIF Biological Term Annotations	1.0	null
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mir335	GeneRIF Biological Term Annotations	1.0	null
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060799
H3K36me3_cardiac mesoderm_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24876
H3K27me3_astrocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.052
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19967
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.904034
JHOS4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51875
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.978258
differentiation	GeneRIF Biological Term Annotations	1.0	null
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052932
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20654
leiomyoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.37592
HDAC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
low	GeneRIF Biological Term Annotations	1.0	null
pharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.323509
increment	GeneRIF Biological Term Annotations	1.0	null
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056457
top	GeneRIF Biological Term Annotations	1.0	null
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.061
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041322
hacat cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.423818
including	GeneRIF Biological Term Annotations	1.0	null
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.85871
myc	GeneRIF Biological Term Annotations	1.0	null
NCIH1355	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34694
T3M10	CCLE Cell Line Gene CNV Profiles	1.0	1.48494
leiomyoma	GeneRIF Biological Term Annotations	1.0	null
termed	GeneRIF Biological Term Annotations	1.0	null
19895320-Table1	GeneSigDB Published Gene Signatures	1.0	null
parenchyma	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.276145
ewing	GeneRIF Biological Term Annotations	1.0	null
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.42364
support	GeneRIF Biological Term Annotations	1.0	null
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.850142
mir217	GeneRIF Biological Term Annotations	1.0	null
MAFK_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
s1pr1	GeneRIF Biological Term Annotations	1.0	null
DMS 454	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875612
mir490	GeneRIF Biological Term Annotations	1.0	null
prooncogenic	GeneRIF Biological Term Annotations	1.0	null
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875612
BT474	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38135
OVCAR433	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5981
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054791
POLR2A	ENCODE Transcription Factor Targets	1.0	null
prepuce	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.413532
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19175
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33595
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14073
modulate	GeneRIF Biological Term Annotations	1.0	null
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.85871
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67834
squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.382508
e2f3	GeneRIF Biological Term Annotations	1.0	null
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.10577
large granular lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.18202
MAFK_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
AU565	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41647
Adenocarcinoma	CTD Gene-Disease Associations	1.0	1.24275
MAFF	ENCODE Transcription Factor Targets	1.0	null
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875612
grprmediated	GeneRIF Biological Term Annotations	1.0	null
SUDHL10	CCLE Cell Line Gene CNV Profiles	1.0	2.59998
H3K4me3_cardiac mesoderm_hg19_5	ENCODE Histone Modification Site Profiles	1.0	null
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.061
HCC1143	CCLE Cell Line Gene CNV Profiles	1.0	2.20946
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041854
MAFK	ENCODE Transcription Factor Targets	1.0	null
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28595
nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.160761
sk-n-be(2) cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.20755
metastasis	GeneRIF Biological Term Annotations	1.0	null
virion part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.612895
factors	GeneRIF Biological Term Annotations	1.0	null
624 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.61499
HDAC6_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06855
H3K36me3_CD34 Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054324
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.844801
H3K36me3_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
mirnas	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
hepatocellular	GeneRIF Biological Term Annotations	1.0	null
SNU449	CCLE Cell Line Gene CNV Profiles	-1.0	-1.88541
Infertility, Male	CTD Gene-Disease Associations	1.0	1.72116
mir4792	GeneRIF Biological Term Annotations	1.0	null
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01011
POLR2A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OAW28	CCLE Cell Line Gene CNV Profiles	1.0	1.48215
Glioblastoma	CTD Gene-Disease Associations	1.0	1.23201
kato-iii cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.755364
16934749-Table3	GeneSigDB Published Gene Signatures	1.0	null
H3K36me3_ES-Bruce4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053883
brain cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.30848
H3K4me1_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
BT20	CCLE Cell Line Gene CNV Profiles	1.0	2.00922
JHOS2	CCLE Cell Line Gene CNV Profiles	1.0	1.92046
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.242054
H3K27me3_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
reveal	GeneRIF Biological Term Annotations	1.0	null
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cardia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.645695
NFIC	JASPAR Predicted Transcription Factor Targets	1.0	null
NCIH727	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69881
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46386
BICR16	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64103
JHOS-4	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.7119
biological	GeneRIF Biological Term Annotations	1.0	null
MAFF_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KDM5A	ENCODE Transcription Factor Targets	1.0	null
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.061
H3K36me3_cardiac mesoderm_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
unappreciated	GeneRIF Biological Term Annotations	1.0	null
hnscc	GeneRIF Biological Term Annotations	1.0	null
NCIH2172	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00209
Liver Neoplasms	CTD Gene-Disease Associations	1.0	1.32637
clusters	GeneRIF Biological Term Annotations	1.0	null
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53088
FADU	CCLE Cell Line Gene CNV Profiles	1.0	1.33543
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.966574
sk-n-be(2)c cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.945226
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069149
POLR2AphosphoS5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_cardiac mesoderm_hg19_8	ENCODE Transcription Factor Binding Site Profiles	1.0	null
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054525
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.77809
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054503
pharyngeal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.17624
mir106a363	GeneRIF Biological Term Annotations	1.0	null
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054607
NCIH841	CCLE Cell Line Gene CNV Profiles	-1.0	-1.80799
virion	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.609932
H3K36me3_cardiac mesoderm_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
sarcoma	GeneRIF Biological Term Annotations	1.0	null
peripheral blood cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.292436
H3K27ac_ES-Bruce4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_cardiac mesoderm_hg19_6	ENCODE Histone Modification Site Profiles	1.0	null
SKES1	CCLE Cell Line Gene CNV Profiles	1.0	1.82153
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_Mobilized CD34 Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K36me3_cardiac mesoderm_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060861
LMSU	CCLE Cell Line Gene CNV Profiles	1.0	2.09315
some	GeneRIF Biological Term Annotations	1.0	null
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053163
Disorders of Sex Development	CTD Gene-Disease Associations	1.0	1.26144
cell type benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047159
FOS	ENCODE Transcription Factor Targets	1.0	null
spinal column	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.138655
gastric cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.2779
carcinogenesis	GeneRIF Biological Term Annotations	1.0	null
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.85871