association	dataset	threshold value	standardized value
AGS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18571
HPAC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23331
EZH2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
tumours	GeneRIF Biological Term Annotations	1.0	null
YY1_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
18478077-Table2b	GeneSigDB Published Gene Signatures	1.0	null
targets	GeneRIF Biological Term Annotations	1.0	null
classified	GeneRIF Biological Term Annotations	1.0	null
SKNDZ	CCLE Cell Line Gene CNV Profiles	-1.0	-2.10012
H3K27me3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TBP	ENCODE Transcription Factor Targets	1.0	null
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2423
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.55915
ABC1	CCLE Cell Line Gene CNV Profiles	1.0	1.37106
aggressive	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_Peripheral Blood Mononuclear Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K36me3_cardiac mesoderm_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
represent	GeneRIF Biological Term Annotations	1.0	null
E2F6	ENCODE Transcription Factor Targets	1.0	null
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.941923
PANC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45412
somatic	GeneRIF Biological Term Annotations	1.0	null
NCIH1581	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60297
MAFK_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2423
regulated	GeneRIF Biological Term Annotations	1.0	null
cellular	GeneRIF Biological Term Annotations	1.0	null
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23716
GCIY	CCLE Cell Line Gene CNV Profiles	1.0	1.80482
YY1	ENCODE Transcription Factor Targets	1.0	null
RL	CCLE Cell Line Gene CNV Profiles	-1.0	-2.46411
occurrence	GeneRIF Biological Term Annotations	1.0	null
G130	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.830137
YAPC	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38468
oncomir372373	GeneRIF Biological Term Annotations	1.0	null
SCC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18571
haplotype	GeneRIF Biological Term Annotations	1.0	null
MDAMB361	CCLE Cell Line Gene CNV Profiles	1.0	1.48483
hcc	GeneRIF Biological Term Annotations	1.0	null
only	GeneRIF Biological Term Annotations	1.0	null
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2423
H2AFZ_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2AFZ_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1937	CCLE Cell Line Gene CNV Profiles	1.0	1.61284
mirs372373	GeneRIF Biological Term Annotations	1.0	null
H4K91ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
NCI-H1623	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33872
KARPAS-422	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28574
H3K4me3_fibroblast of villous mesenchyme_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
H2AFZ_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ES-WA7 Cells	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	1.0	1.03649
YD15	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42543
YY1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GABPA_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Arsenic	CTD Gene-Chemical Interactions	1.0	null
H3K4me3_fibroblast of villous mesenchyme_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me2_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12001
SK-N-DZ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.13064
involving	GeneRIF Biological Term Annotations	1.0	null
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18571
directly	GeneRIF Biological Term Annotations	1.0	null
suppressed	GeneRIF Biological Term Annotations	1.0	null
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11339
HCFC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MYC	ENCODE Transcription Factor Targets	1.0	null
LCLC-97TM1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.914431
KYSE-510	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.954213
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01777
regulate	GeneRIF Biological Term Annotations	1.0	null
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.884865
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.884865
more	GeneRIF Biological Term Annotations	1.0	null
OVCAR4	CCLE Cell Line Gene CNV Profiles	1.0	1.9002
hsamir372	GeneRIF Biological Term Annotations	1.0	null
colorectal	GeneRIF Biological Term Annotations	1.0	null
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.830137
expressing	GeneRIF Biological Term Annotations	1.0	null
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.998606
MAX_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS2_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
downregulated	GeneRIF Biological Term Annotations	1.0	null
primirnas371373ht2	GeneRIF Biological Term Annotations	1.0	null
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17674
tumour	GeneRIF Biological Term Annotations	1.0	null
MAX_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09353
cdk2	GeneRIF Biological Term Annotations	1.0	null
JUND_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
synchronous	GeneRIF Biological Term Annotations	1.0	null
promote	GeneRIF Biological Term Annotations	1.0	null
influence	GeneRIF Biological Term Annotations	1.0	null
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
protective	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
HCC4011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88575
COLO 794	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.940135
RI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10275
mirna	GeneRIF Biological Term Annotations	1.0	null
number	GeneRIF Biological Term Annotations	1.0	null
LCLC-103H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.986523
MAFK	ENCODE Transcription Factor Targets	1.0	null
vector	GeneRIF Biological Term Annotations	1.0	null
BHY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.830137
reprogramming	GeneRIF Biological Term Annotations	1.0	null
CHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75865
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.965443
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.888943
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
antioncogenic	GeneRIF Biological Term Annotations	1.0	null
MEC2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6928
highly	GeneRIF Biological Term Annotations	1.0	null
NCIH2170	CCLE Cell Line Gene CNV Profiles	1.0	1.42233
HGC27	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58677
JEKO1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81744
KYSE510	CCLE Cell Line Gene CNV Profiles	1.0	1.66695
metastasis	GeneRIF Biological Term Annotations	1.0	null
transcription	GeneRIF Biological Term Annotations	1.0	null
HT1376	CCLE Cell Line Gene CNV Profiles	-1.0	-1.77176
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
roles	GeneRIF Biological Term Annotations	1.0	null
liver	GeneRIF Biological Term Annotations	1.0	null
atad2	GeneRIF Biological Term Annotations	1.0	null
gliomas	GeneRIF Biological Term Annotations	1.0	null
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02897
H3K4me3_Caco-2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
modulation	GeneRIF Biological Term Annotations	1.0	null
H2AK5ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09353
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11339
serum	GeneRIF Biological Term Annotations	1.0	null
GABPA	ENCODE Transcription Factor Targets	1.0	null
H3K36me3_H7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03264
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20779
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30682
RERF-GC-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.80659
SNU878	CCLE Cell Line Gene CNV Profiles	1.0	2.5043
H3K36me3_cardiac mesoderm_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.70207
sqstm1	GeneRIF Biological Term Annotations	1.0	null
followup	GeneRIF Biological Term Annotations	1.0	null
SU8686	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53043
mir372	GeneRIF Biological Term Annotations	1.0	null
transcript	GeneRIF Biological Term Annotations	1.0	null
MAX	ENCODE Transcription Factor Targets	1.0	null
TEN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55922
ONS76	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46414
imprinted	GeneRIF Biological Term Annotations	1.0	null
HT1197	CCLE Cell Line Gene CNV Profiles	1.0	1.60126
silencing	GeneRIF Biological Term Annotations	1.0	null
PA-TU-8988T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09353
H3K4ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
NCIH1573	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46504
hepatocellular	GeneRIF Biological Term Annotations	1.0	null
YAPC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38287
H3K4me3_fibroblast of pedal digit skin_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
IRF1	ENCODE Transcription Factor Targets	1.0	null
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23716
CJM	CCLE Cell Line Gene CNV Profiles	1.0	1.33192
NCI-H226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.896381
mechanisms	GeneRIF Biological Term Annotations	1.0	null
MEC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55499
oncogenes	GeneRIF Biological Term Annotations	1.0	null
candidate	GeneRIF Biological Term Annotations	1.0	null
proteomic	GeneRIF Biological Term Annotations	1.0	null
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88575
YD10B	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52022
Lung Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
KCI-MOH1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45606
testicular	GeneRIF Biological Term Annotations	1.0	null
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.996495
Primary B cells from cord blood	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-1.08735
miR-targeted genes in muscle cell - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
GABPA_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO-704	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.877608
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.966397
comparative	GeneRIF Biological Term Annotations	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
RT4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.896381
H3K4me3_cardiac mesoderm_hg19_8	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_cardiac mesoderm_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
H3K9ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
HCC33	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50855
COV362	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49628
H3K4me3_H7_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SET-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.63278
targeted	GeneRIF Biological Term Annotations	1.0	null
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.94329
NCI-H23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88575
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.884865
clearance	GeneRIF Biological Term Annotations	1.0	null
suppressive	GeneRIF Biological Term Annotations	1.0	null
CAL78	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32297
HCC366	CCLE Cell Line Gene CNV Profiles	1.0	1.33126
H3K4me3_Caco-2_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
control	GeneRIF Biological Term Annotations	1.0	null
NCI-H250	COSMIC Cell Line Gene CNV Profiles	1.0	2.93899
SNU-668	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67607
CBX3_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
spontaneous	GeneRIF Biological Term Annotations	1.0	null
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23489
H3K4me2_H1 BMP4 Derived Mesendoderm Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
16934749-Table3	GeneSigDB Published Gene Signatures	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.934815
microrna	GeneRIF Biological Term Annotations	1.0	null
NCIH2286	CCLE Cell Line Gene CNV Profiles	-1.0	-1.78783
NCCSTCK140	CCLE Cell Line Gene CNV Profiles	1.0	1.38541
H3K9ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
LS123	CCLE Cell Line Gene CNV Profiles	1.0	1.38242
HCC78	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27321
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18442
H3K4me3_H7_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
MAX_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23331
migration	GeneRIF Biological Term Annotations	1.0	null
mirna373	GeneRIF Biological Term Annotations	1.0	null
germ	GeneRIF Biological Term Annotations	1.0	null
polymorphism	GeneRIF Biological Term Annotations	1.0	null
ES-I3 Cells	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-1.90771
protooncogene	GeneRIF Biological Term Annotations	1.0	null
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30682
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03264
CBX3_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
carcinogenesis	GeneRIF Biological Term Annotations	1.0	null
effect	GeneRIF Biological Term Annotations	1.0	null
marker	GeneRIF Biological Term Annotations	1.0	null
antisense	GeneRIF Biological Term Annotations	1.0	null
NCI-H2023	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.94096
AGS	CCLE Cell Line Gene CNV Profiles	1.0	1.41401
act	GeneRIF Biological Term Annotations	1.0	null
NCI-H1944	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08213
hepatic	GeneRIF Biological Term Annotations	1.0	null
NCIH1781	CCLE Cell Line Gene CNV Profiles	-1.0	-1.88077
mirna372	GeneRIF Biological Term Annotations	1.0	null
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.32668
hbv	GeneRIF Biological Term Annotations	1.0	null
investigated	GeneRIF Biological Term Annotations	1.0	null
diagnosis	GeneRIF Biological Term Annotations	1.0	null
infection	GeneRIF Biological Term Annotations	1.0	null
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.888018
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.89621
20086245-Table2b	GeneSigDB Published Gene Signatures	1.0	null
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03264
EZH2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Carcinoma, Non-Small-Cell Lung	HuGE Navigator Gene-Phenotype Associations	1.0	null
HS 746T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.863917
BICR31	CCLE Cell Line Gene CNV Profiles	1.0	1.91519
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
HCC1599	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40824
H4K5ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
eGFP-JUND_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
SNU601	CCLE Cell Line Gene CNV Profiles	1.0	1.55337
OVCAR-3	COSMIC Cell Line Gene CNV Profiles	1.0	2.93899
H3K14ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
OVISE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02897
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.954213
nsclc	GeneRIF Biological Term Annotations	1.0	null
MCF10DCIS.COM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.877608
TBP_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ONCODG1	CCLE Cell Line Gene CNV Profiles	1.0	2.08897
H3K4me3_cardiac mesoderm_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_H7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88575
cyclin	GeneRIF Biological Term Annotations	1.0	null
further	GeneRIF Biological Term Annotations	1.0	null
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75865
downregulating	GeneRIF Biological Term Annotations	1.0	null
principle	GeneRIF Biological Term Annotations	1.0	null
IRF1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18571
KP4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33022
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.70207
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03264
hsamir302b	GeneRIF Biological Term Annotations	1.0	null
SNU-484	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.914431
NCI-H1581	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26145
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.05742
E2F6_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PCM6	CCLE Cell Line Gene CNV Profiles	-1.0	-2.41746
tsmir	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_cardiac mesoderm_hg19_6	ENCODE Histone Modification Site Profiles	1.0	null
miRNAs involved in DNA damage response(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
SNU668	CCLE Cell Line Gene CNV Profiles	1.0	1.69021
YY1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.97318
20406893-Table1a	GeneSigDB Published Gene Signatures	1.0	null
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63783
Glucose Intolerance	CTD Gene-Disease Associations	1.0	1.05423
lines	GeneRIF Biological Term Annotations	1.0	null
yy1	GeneRIF Biological Term Annotations	1.0	null
proof	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_fibroblast of lung_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09353
tumors	GeneRIF Biological Term Annotations	1.0	null
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33872
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33872
revealed	GeneRIF Biological Term Annotations	1.0	null
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3291
HCC78	CCLE Cell Line Gene CNV Profiles	1.0	1.40975
H3K4me3_iPS DF 19.11	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03201
CBX3	ENCODE Transcription Factor Targets	1.0	null
exerted	GeneRIF Biological Term Annotations	1.0	null
oncogenic	GeneRIF Biological Term Annotations	1.0	null
RL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.78802
H3K4me1_H1 BMP4 Derived Trophoblast Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
TMD8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.45215
regulator	GeneRIF Biological Term Annotations	1.0	null
RMUGS	CCLE Cell Line Gene CNV Profiles	1.0	1.50066
A549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23489
primirnas371373	GeneRIF Biological Term Annotations	1.0	null
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17674
H3K36me3_cardiac mesoderm_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PK59	CCLE Cell Line Gene CNV Profiles	1.0	1.46921
andor	GeneRIF Biological Term Annotations	1.0	null
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH929	CCLE Cell Line Gene CNV Profiles	-1.0	-2.79515
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.97318
KARPAS299	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20477
H3K4me3_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
invasion	GeneRIF Biological Term Annotations	1.0	null
HS 936.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2423
HEC-1-A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03407
H3K27ac_iPS DF 6.9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
MAX_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH1703	CCLE Cell Line Gene CNV Profiles	1.0	2.37938
CHD1	ENCODE Transcription Factor Targets	1.0	null
HUH6	CCLE Cell Line Gene CNV Profiles	1.0	2.20385
NCIH1975	CCLE Cell Line Gene CNV Profiles	1.0	1.78509
RI1	CCLE Cell Line Gene CNV Profiles	1.0	1.46805
MYC_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.63483
antimir3713	GeneRIF Biological Term Annotations	1.0	null
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.830137
H3K4me3_cardiac mesoderm_hg19_4	ENCODE Histone Modification Site Profiles	1.0	null
HCFC1	ENCODE Transcription Factor Targets	1.0	null
GCIY	COSMIC Cell Line Gene CNV Profiles	1.0	2.93899
prognostic	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
NCIH2227	CCLE Cell Line Gene CNV Profiles	1.0	2.00096
proliferation	GeneRIF Biological Term Annotations	1.0	null
E2F6_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
miR-targeted genes in lymphocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
CHD1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
conducting	GeneRIF Biological Term Annotations	1.0	null
KP4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09353
H3K4me3_cardiac mesoderm_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
malignancy	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
cycle	GeneRIF Biological Term Annotations	1.0	null
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.97318
H9 Cells	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	1.0	2.05284
cac	GeneRIF Biological Term Annotations	1.0	null
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.965443
JUND	ENCODE Transcription Factor Targets	1.0	null
test	GeneRIF Biological Term Annotations	1.0	null
SKM1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.78675
epigenetic	GeneRIF Biological Term Annotations	1.0	null