association	dataset	threshold value	standardized value
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08756
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19082
RUNX2-22187159-PCA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
E2F4	ENCODE Transcription Factor Targets	1.0	null
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17754
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16649
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.86892
KYSE520	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40456
NCIH1355	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32295
TFAP2A	JASPAR Predicted Transcription Factor Targets	1.0	null
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.861402
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20734
H3K27me3_erythroblast_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_erythroblast_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
STAT3_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.87545
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03392
CEBPB	ENCODE Transcription Factor Targets	1.0	null
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.87545
SKLU1	CCLE Cell Line Gene CNV Profiles	1.0	1.50831
LMSU	CCLE Cell Line Gene CNV Profiles	1.0	1.93509
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07325
NCIH1651	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37205
CTCF_GM10266_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.91202
143B	CCLE Cell Line Gene CNV Profiles	1.0	1.84754
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23723
CTCF_MCF-7_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
KDM5A	ENCODE Transcription Factor Targets	1.0	null
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.963581
CPCN	CCLE Cell Line Gene CNV Profiles	1.0	1.75899
SU-DHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43399
MDAMB361	CCLE Cell Line Gene CNV Profiles	-1.0	-1.8646
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.91202
SW780	CCLE Cell Line Gene CNV Profiles	-1.0	-1.93376
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962762
NCIH3255	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00211
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17754
SOX17	JASPAR Predicted Transcription Factor Targets	1.0	null
JHOS4	CCLE Cell Line Gene CNV Profiles	1.0	2.79308
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0632
H3K9me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
amyloid	GeneRIF Biological Term Annotations	1.0	null
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23723
NCIH1930	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
IGR1	CCLE Cell Line Gene CNV Profiles	1.0	2.20946
RERFLCAD2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.80954
E2F4_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_LNCaP clone FGC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.8771
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14185
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.91202
AU565	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45163
RUNX2	ChEA Transcription Factor Targets	1.0	null
HCC1143	CCLE Cell Line Gene CNV Profiles	1.0	2.36415
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12338
SKBR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50792
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4187
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12338
NCIH1963	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49947
H3K9me3_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
NCI-H3122	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.61078
POLR2A_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
NUDUL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57809
RVH421	CCLE Cell Line Gene CNV Profiles	1.0	1.39644
NCIH1838	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39933
SBC5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46104
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.86892
CAL-85-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11239
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.963581
STAT5_01_279	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	6.89041
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.07973
NCI-H2009	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.61078
Fatty Liver	CTD Gene-Disease Associations	1.0	2.88009
RPMI7951	CCLE Cell Line Gene CNV Profiles	1.0	1.33395
HCC1395	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5788
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.91202
CEBPB_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07325
CTCF_GM10248_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CEBPB_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
bace1	GeneRIF Biological Term Annotations	1.0	null
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14272
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.912694
STAT3	ENCODE Transcription Factor Targets	1.0	null
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.985812
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33804
RCM1	CCLE Cell Line Gene CNV Profiles	1.0	1.62303
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32708
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.98828
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08183
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.61504
BFTC905	CCLE Cell Line Gene CNV Profiles	-1.0	-1.65759
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.79515
NCIH650	CCLE Cell Line Gene CNV Profiles	1.0	1.54919
H3K9me3_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
AP-2rep	MotifMap Predicted Transcription Factor Targets	1.0	null
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855326
Cocaine-Related Disorders	CTD Gene-Disease Associations	1.0	2.88009
HUH7	CCLE Cell Line Gene CNV Profiles	1.0	1.54777
CGTHW1	CCLE Cell Line Gene CNV Profiles	1.0	2.09602
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.74966
POLR2A_A549_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EBF1_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BT474	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37913
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.91202
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07325
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.913394
COLO 794	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.833096
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69288
CAL851	CCLE Cell Line Gene CNV Profiles	1.0	1.3883
precursor	GeneRIF Biological Term Annotations	1.0	null
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.2833
OKAJIMA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.860586
HCC-78	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.61078
OV56	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.824831
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.824831
TAL1::TCF3	MotifMap Predicted Transcription Factor Targets	1.0	null
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855326
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.89866
U2OS	CCLE Cell Line Gene CNV Profiles	1.0	1.69901
SUDHL1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.08778
NCIH716	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20312
AR_01_278	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	4.214
SCABER	CCLE Cell Line Gene CNV Profiles	-1.0	-1.75627
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.01163
LC1SQSF	CCLE Cell Line Gene CNV Profiles	1.0	1.43131
KU1919	CCLE Cell Line Gene CNV Profiles	1.0	1.42876
NCIH727	CCLE Cell Line Gene CNV Profiles	-1.0	-2.3514
H3K4me2_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
EBF1	ENCODE Transcription Factor Targets	1.0	null
RERFLCSQ1	CCLE Cell Line Gene CNV Profiles	1.0	1.82322
SQ1	CCLE Cell Line Gene CNV Profiles	1.0	1.37676
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07325
CEBPB_IMR-90_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
FOS_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU-1040	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.61078
SKLMS1	CCLE Cell Line Gene CNV Profiles	1.0	1.5592
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.985812
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17754
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53284
microrna384	GeneRIF Biological Term Annotations	1.0	null
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19721
NCIH747	CCLE Cell Line Gene CNV Profiles	1.0	1.54148
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962762
HCC1187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19082
SW579	CCLE Cell Line Gene CNV Profiles	1.0	1.39731
POLR2A_HGPS cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.2833
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.84374
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41959
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.86892
NFIC	JASPAR Predicted Transcription Factor Targets	1.0	null
TE5	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.98828
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.963581
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01849
H3K27me3_Brain Anterior Caudate	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CAL33	CCLE Cell Line Gene CNV Profiles	1.0	1.74601
PANC0403	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3463
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39584
KLF7_01_342	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	2.90157
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
morphine_mus musculus_gpl6246_gse17731	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
VMRCLCP	CCLE Cell Line Gene CNV Profiles	1.0	2.00702
OCIMY7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.56855
EJM	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33224
NCIH2009	CCLE Cell Line Gene CNV Profiles	-1.0	-1.72046
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.956349
H3K9me3_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
rnf2_21051595_92dot1_lof_human_gpl10558_gse24896	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.026038
MPP89	CCLE Cell Line Gene CNV Profiles	-1.0	-1.66077
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.54236
ATM_KD_GSE54268_661_human_MCF-10A	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
SKMES1	CCLE Cell Line Gene CNV Profiles	1.0	2.7212
NCIH889	CCLE Cell Line Gene CNV Profiles	1.0	1.56208
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.8245
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53378
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.834625
FOS	ENCODE Transcription Factor Targets	1.0	null