association	dataset	threshold value	standardized value
KYSE520	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33085
BFTC905	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54899
GATA3_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SCABER	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6463
CH157MN	CCLE Cell Line Gene CNV Profiles	1.0	1.3991
SU-DHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35694
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12768
HARA	CCLE Cell Line Gene CNV Profiles	1.0	1.35386
NCI-H2009	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.57558
OV56	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.825369
VMRCLCP	CCLE Cell Line Gene CNV Profiles	1.0	2.09602
HUH-7	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.57558
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24273
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.920882
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17112
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63678
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.943158
FOXM1	ENCODE Transcription Factor Targets	1.0	null
CAL851	CCLE Cell Line Gene CNV Profiles	1.0	1.60073
POLR2A	ENCODE Transcription Factor Targets	1.0	null
MFE280	CCLE Cell Line Gene CNV Profiles	1.0	1.46005
NCIH1930	CCLE Cell Line Gene CNV Profiles	-1.0	-2.3514
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.56812
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.36204
ZNF217_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TCF7L2_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SUDHL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.99911
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03727
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.43717
SKLU1	CCLE Cell Line Gene CNV Profiles	1.0	1.83252
MDAMB361	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81973
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.873259
H3K9ac_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
HCC95	CCLE Cell Line Gene CNV Profiles	1.0	1.61917
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08776
LC1SQSF	CCLE Cell Line Gene CNV Profiles	1.0	1.42638
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
OKAJIMA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.824981
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0669
SKBR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41626
EVSAT	CCLE Cell Line Gene CNV Profiles	1.0	1.576
CTCF	ENCODE Transcription Factor Targets	1.0	null
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.56701
GATA3_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.82574
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.95587
143B	CCLE Cell Line Gene CNV Profiles	1.0	1.50386
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.825369
TCF7L2	ENCODE Transcription Factor Targets	1.0	null
FOXM1_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.869458
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33601
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19568
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.990744
SUM 52PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08688
ZNF217	ENCODE Transcription Factor Targets	1.0	null
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34772
LUDLU1	CCLE Cell Line Gene CNV Profiles	1.0	1.60397
COLO680N	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
HCC-78	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.57558
CAL-85-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11663
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08695
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18226
OCIMY7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46414
NR2F2_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HUH7	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
NCIH727	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20312
FOSL2	ENCODE Transcription Factor Targets	1.0	null
TE5	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.987309
HUH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.63799
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.92165
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66242
NCIH2009	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60533
NUDUL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38304
SBC5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51026
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.869458
HCC1187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19568
SNUC1	CCLE Cell Line Gene CNV Profiles	1.0	1.68912
STAT3_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14798
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.869458
EJM	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47453
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.914361
NR2F2_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07711
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.92165
H3K9me3_Breast vHMEC	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24273
HCC1143	CCLE Cell Line Gene CNV Profiles	1.0	2.40948
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.58796
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.16641
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13858
IGR1	CCLE Cell Line Gene CNV Profiles	1.0	2.5026
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.43617
AU565	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67019
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855814
CTCF_GM10248_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.899439
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.943158
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.988224
SKMES1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36712
EP300_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COV362	CCLE Cell Line Gene CNV Profiles	1.0	1.42638
NCIH747	CCLE Cell Line Gene CNV Profiles	1.0	1.8107
NR2F2	ENCODE Transcription Factor Targets	1.0	null
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41061
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57821
NCIH716	CCLE Cell Line Gene CNV Profiles	-1.0	-2.09288
NCIH1838	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32688
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.920882
GATA3	ENCODE Transcription Factor Targets	1.0	null
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18226
STAT3	ENCODE Transcription Factor Targets	1.0	null
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.988224
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.873259
EP300	ENCODE Transcription Factor Targets	1.0	null
NCIH3255	CCLE Cell Line Gene CNV Profiles	-1.0	-1.93295
SIN3A_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02153
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.873259
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.873259
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855814
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.10201
HCC1395	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47325
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39287
NCIH650	CCLE Cell Line Gene CNV Profiles	1.0	1.81658
FOSL2_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H3122	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.57558
SNU308	CCLE Cell Line Gene CNV Profiles	1.0	1.36601
CORL23	CCLE Cell Line Gene CNV Profiles	1.0	1.35957
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08582
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.920882
JHOS4	CCLE Cell Line Gene CNV Profiles	1.0	2.20946
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.958099
SW780	CCLE Cell Line Gene CNV Profiles	-1.0	-1.85334
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.873259
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.92165
JHOS2	CCLE Cell Line Gene CNV Profiles	1.0	1.46787
SIN3A	ENCODE Transcription Factor Targets	1.0	null
U2OS	CCLE Cell Line Gene CNV Profiles	1.0	1.95926
SNU-1040	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.57558
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.89634
POLR2A_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.36776
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18226
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.873259
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07711
RPMI7951	CCLE Cell Line Gene CNV Profiles	1.0	1.49634
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07711
NCIH1963	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40396
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.95587
MPP89	CCLE Cell Line Gene CNV Profiles	-1.0	-1.72608
CPCN	CCLE Cell Line Gene CNV Profiles	1.0	1.98025
RERFLCSQ1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57952
SQ1	CCLE Cell Line Gene CNV Profiles	1.0	1.7273
RERFLCAD2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.74473
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.990744
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.913651
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.95772