association	dataset	threshold value	standardized value
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.861203
SUPHD1	CCLE Cell Line Gene CNV Profiles	1.0	2.36279
H3K4me2_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
responsible	GeneRIF Biological Term Annotations	1.0	null
SET2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36108
JUN	ENCODE Transcription Factor Targets	1.0	null
20068076-SuppTable11b	GeneSigDB Published Gene Signatures	1.0	null
kinaseakt	GeneRIF Biological Term Annotations	1.0	null
HUH-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0469
RERF-GC-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.958897
H3K27ac_olfactory bulb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MYOD1	ENCODE Transcription Factor Targets	1.0	null
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0469
WRNIP1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TCF12	ENCODE Transcription Factor Targets	1.0	null
pi3	GeneRIF Biological Term Annotations	1.0	null
U138MG	CCLE Cell Line Gene CNV Profiles	-1.0	-2.24777
HEL	CCLE Cell Line Gene CNV Profiles	1.0	1.83296
H3K4me1_placenta_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
rs1056629ac	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
HUT78	CCLE Cell Line Gene CNV Profiles	-1.0	-1.74226
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.991672
signal	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49004
H3K36me3_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JUND	ENCODE Transcription Factor Targets	1.0	null
H3K4me1_olfactory bulb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_cardiac mesoderm_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HUPT3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.9492
angiogenesis	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_CD8 Naive Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
biomarkers	GeneRIF Biological Term Annotations	1.0	null
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
20068076-SuppTable11a	GeneSigDB Published Gene Signatures	1.0	null
KDM5A	ENCODE Transcription Factor Targets	1.0	null
NCI-H716	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01072
LC4-1	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
REH	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
U-118-MG	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
KS-1	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
TOV-112D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.849774
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SAP30_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
U-87-MG	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
HUP-T3	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
affecting	GeneRIF Biological Term Annotations	1.0	null
HCC2157	CCLE Cell Line Gene CNV Profiles	1.0	1.69886
GATA1_megakaryocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LMO2	ChEA Transcription Factor Targets	1.0	null
MYOD1_C2C12_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
bclxl	GeneRIF Biological Term Annotations	1.0	null
tp53	GeneRIF Biological Term Annotations	1.0	null
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69526
GB1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.67177
H2AFZ_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
invasiveness	GeneRIF Biological Term Annotations	1.0	null
mir4915p	GeneRIF Biological Term Annotations	1.0	null
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15918
inhibition	GeneRIF Biological Term Annotations	1.0	null
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.9608
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14117
20068076-SuppTable10	GeneSigDB Published Gene Signatures	1.0	null
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25426
augmentation	GeneRIF Biological Term Annotations	1.0	null
KYSE-450	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.87614
H3K36me3_cardiac mesoderm_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H1703	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.842005
MXI1	ENCODE Transcription Factor Targets	1.0	null
CEBPD	ChEA Transcription Factor Targets	1.0	null
DK-MG	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
JHOS-2	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
POLR2A	ENCODE Transcription Factor Targets	1.0	null
hcv	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_CH12.LX_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.861994
LCLC103H	CCLE Cell Line Gene CNV Profiles	1.0	1.76242
MG63	CCLE Cell Line Gene CNV Profiles	1.0	2.02533
NALM6	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45813
STAT3	ENCODE Transcription Factor Targets	1.0	null
BT-474	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.833594
NOMO1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.66878
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00628
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.9608
pancreatic	GeneRIF Biological Term Annotations	1.0	null
CAPAN1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67138
KYSE140	CCLE Cell Line Gene CNV Profiles	1.0	1.82673
HUP-T4	COSMIC Cell Line Gene CNV Profiles	1.0	2.1433
HUP-T4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
H4K20me1_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
arsenic	GeneRIF Biological Term Annotations	1.0	null
gata4_21746915_heart_lof_mouse_gpl6246_gds3931	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.032398
ASPC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88164
NCIH647	CCLE Cell Line Gene CNV Profiles	1.0	1.68716
arsenic trioxide	CTD Gene-Chemical Interactions	1.0	null
OVCAR-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.836108
KYSE70	CCLE Cell Line Gene CNV Profiles	1.0	1.41101
SK-GT-4	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
MYOD1_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
metastasis	GeneRIF Biological Term Annotations	1.0	null
variation	GeneRIF Biological Term Annotations	1.0	null
NCI-H441	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01042
modulators	GeneRIF Biological Term Annotations	1.0	null
PF-382	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.911456
risk	GeneRIF Biological Term Annotations	1.0	null
PRRX2	JASPAR Predicted Transcription Factor Targets	1.0	null
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06456
MCF10DCIS.COM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04342
NALM-6	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
suggested	GeneRIF Biological Term Annotations	1.0	null
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41696
NCI-H2595	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69526
NCI-H1755	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
GATA2-20887958-HPC-7-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
TCF3_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50135
LYL1	ChEA Transcription Factor Targets	1.0	null
MYOG_myocyte_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
replication	GeneRIF Biological Term Annotations	1.0	null
blocked	GeneRIF Biological Term Annotations	1.0	null
RUNX2-22187159-PCA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
H3K79me2_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04718
POLR2AphosphoS5_SK-N-MC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Cerebral Infarction	HuGE Navigator Gene-Phenotype Associations	1.0	null
NCI-H1623	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02913
POLR2AphosphoS5_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU449	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36944
IGR1	CCLE Cell Line Gene CNV Profiles	1.0	2.90696
TOX_01_331	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.63174
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04718
HCC1263	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.861203
PANC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01072
SNU-449	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
JUND_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69526
blocking	GeneRIF Biological Term Annotations	1.0	null
1321N1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71822
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MIA PACA-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69526
RS411	CCLE Cell Line Gene CNV Profiles	-1.0	-1.689
DKMG	CCLE Cell Line Gene CNV Profiles	-1.0	-1.62468
suppressed	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_cardiac mesoderm_hg19_8	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.79475
sw1990	GeneRIF Biological Term Annotations	1.0	null
atherosclerotic	GeneRIF Biological Term Annotations	1.0	null
CEBPD-23245923-MEF-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
effectively	GeneRIF Biological Term Annotations	1.0	null
IHH-4	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
NCIH889	CCLE Cell Line Gene CNV Profiles	1.0	1.50327
H3K4me1_embryonic fibroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H2373	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
H3K4me1_CH12.LX_mm9_4	ENCODE Histone Modification Site Profiles	1.0	null
loss	GeneRIF Biological Term Annotations	1.0	null
SNU119	CCLE Cell Line Gene CNV Profiles	1.0	1.5749
H9	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
H2591	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69526
143B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.88636
NCIH1755	CCLE Cell Line Gene CNV Profiles	-1.0	-1.56469
mmp29	GeneRIF Biological Term Annotations	1.0	null
expressions	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_Muscle Satellite Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00628
SK-N-DZ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28929
HEL9217	CCLE Cell Line Gene CNV Profiles	1.0	2.15605
mir491	GeneRIF Biological Term Annotations	1.0	null
MYOG_myocyte_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_cortical plate_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_NT2-D1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO 201	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11313
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
RERF-LC-SQ1	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
H3K27ac_thymus_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09095
LYL1-20887958-HPC-7-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H2023	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.939331
EB2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.938581
NCIH1876	CCLE Cell Line Gene CNV Profiles	1.0	1.79353
ECGI10	CCLE Cell Line Gene CNV Profiles	1.0	2.63435
H3K4me3_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.960077
ME-180	COSMIC Cell Line Gene CNV Profiles	1.0	2.1433
MYOD1_myocyte_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NALM-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69526
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0469
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15927
JUN_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
decreasing	GeneRIF Biological Term Annotations	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.861203
hepatocellular	GeneRIF Biological Term Annotations	1.0	null
colorectal	GeneRIF Biological Term Annotations	1.0	null
downregulated	GeneRIF Biological Term Annotations	1.0	null
CHK1_KD_GSE54267_671_human_U2OS	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05232
BC3C	CCLE Cell Line Gene CNV Profiles	1.0	1.35245
trioxide	GeneRIF Biological Term Annotations	1.0	null
20068076-Table2	GeneSigDB Published Gene Signatures	1.0	null
RUNX2	ChEA Transcription Factor Targets	1.0	null
MYOG	ENCODE Transcription Factor Targets	1.0	null
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44871
NCIH322	CCLE Cell Line Gene CNV Profiles	-1.0	-1.9874
TCF3	ENCODE Transcription Factor Targets	1.0	null
oral	GeneRIF Biological Term Annotations	1.0	null
NCI-H727	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.996733
HCC1576	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.939331
AR	ChEA Transcription Factor Targets	1.0	null
STAT4	MotifMap Predicted Transcription Factor Targets	1.0	null
NOMO-1	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
MYOG_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
serve	GeneRIF Biological Term Annotations	1.0	null
CAPAN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69526
STAT3_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
AM-38	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
RS4-11	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
PRDM1_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
A-375	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33698
H3K4me1_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LB2241-RCC	COSMIC Cell Line Gene CNV Profiles	1.0	2.1433
KG1C	CCLE Cell Line Gene CNV Profiles	1.0	1.33141
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69526
H3K9ac_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69526
ZNF384_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EP300	ENCODE Transcription Factor Targets	1.0	null
KYSE450	CCLE Cell Line Gene CNV Profiles	1.0	1.41916
HCC60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.842005
contributes	GeneRIF Biological Term Annotations	1.0	null
GATA2	ChEA Transcription Factor Targets	1.0	null
REH	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41885
HCC70	CCLE Cell Line Gene CNV Profiles	1.0	1.90411
H3K4me1_spleen_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
SIRT6_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
WRNIP1	ENCODE Transcription Factor Targets	1.0	null
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35361
GB-1	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
SNU-449	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69526
liver	GeneRIF Biological Term Annotations	1.0	null
PANC0213	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37919
HUG1N	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4524
H2595	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
effect	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.21028
SET-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69526
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69526
HCC4011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69526
NCI-H2810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.907573
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0516
TCF12_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.849774
H3K79me2_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SNU738	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42717
H3K36me3_cardiac mesoderm_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
squamous	GeneRIF Biological Term Annotations	1.0	null
CEBPB	ENCODE Transcription Factor Targets	1.0	null
LCLC-103H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.71428
BFTC-905	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.977748
ACHN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60594
CEBPB_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
T84	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.978048
ACHN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69526
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.9415
EP300_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
site	GeneRIF Biological Term Annotations	1.0	null
TM31	CCLE Cell Line Gene CNV Profiles	-1.0	-2.24602
SAP30	ENCODE Transcription Factor Targets	1.0	null
HCC2270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01042
tgfbsmadsnfkb	GeneRIF Biological Term Annotations	1.0	null
D-336MG	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
FXR	MotifMap Predicted Transcription Factor Targets	1.0	null
SIRT6	ENCODE Transcription Factor Targets	1.0	null
mir491mediated	GeneRIF Biological Term Annotations	1.0	null
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15918
EWS-FLI1-20517297-SK-N-MC-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
NCI-H322M	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
E2A	MotifMap Predicted Transcription Factor Targets	1.0	null
HELA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.84789
MXI1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49004
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.9608
NCIH1437	CCLE Cell Line Gene CNV Profiles	-1.0	-2.83427
NUDHL1	CCLE Cell Line Gene CNV Profiles	1.0	1.49497
infarction	GeneRIF Biological Term Annotations	1.0	null
H3K79me2_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mesenchymal	GeneRIF Biological Term Annotations	1.0	null
ABC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.852141
mmp9	GeneRIF Biological Term Annotations	1.0	null
LMO2-20887958-HPC-7-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
JIYOYE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.36703
H3K36me3_cardiac mesoderm_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SKCO1	CCLE Cell Line Gene CNV Profiles	1.0	1.46651
mirna4915p	GeneRIF Biological Term Annotations	1.0	null
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69526
bladder	GTEx Tissue Gene Expression Profiles	1.0	0.884846
MOR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.939645
GATA1_megakaryocyte_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KYSE-520	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01042
RERFLCSQ1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4511
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2359
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15918
BICR78	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
polymorphic	GeneRIF Biological Term Annotations	1.0	null
EWSR1	ChEA Transcription Factor Targets	1.0	null
HT-115	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13554
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08258
Glucose Intolerance	CTD Gene-Disease Associations	1.0	1.05349
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
EC-GI-10	COSMIC Cell Line Gene CNV Profiles	1.0	2.1433
H3K4me1_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Atherosclerosis	HuGE Navigator Gene-Phenotype Associations	1.0	null
SNU-182	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.861203
NCI-H1882	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.60389
ZNF384	ENCODE Transcription Factor Targets	1.0	null
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.06199
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
ACHN	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
H3K4me2_myocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
HCC56	CCLE Cell Line Gene CNV Profiles	1.0	1.37498
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.43908
MKN-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14453
59M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.920486
SK-CO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28769
H3K36me3_liver_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
increasing	GeneRIF Biological Term Annotations	1.0	null
JHOS2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57323
WM1552C	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
H3K4me1_bone marrow macrophage_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
reported	GeneRIF Biological Term Annotations	1.0	null
OUMS27	CCLE Cell Line Gene CNV Profiles	-1.0	-1.85293
MIA-PACA-2	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13554
H3K36me3_cardiac mesoderm_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NUGC-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.955254
LN-18	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69526
BICR 78	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69526
NUGC4	CCLE Cell Line Gene CNV Profiles	1.0	1.43269
PF382	CCLE Cell Line Gene CNV Profiles	-1.0	-1.97211
S117	CCLE Cell Line Gene CNV Profiles	1.0	1.68878
KYSE-70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39216
AR-20517297-VCAP-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
LN-18	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.861203
19807731-Figure1	GeneSigDB Published Gene Signatures	1.0	null
H3K36me3_BJ_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
transition	GeneRIF Biological Term Annotations	1.0	null
SF268	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.939331
NB4	CCLE Cell Line Gene CNV Profiles	1.0	1.71247
git1	GeneRIF Biological Term Annotations	1.0	null
GATA1	ENCODE Transcription Factor Targets	1.0	null
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
STAT6	MotifMap Predicted Transcription Factor Targets	1.0	null
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1437	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
TYK-NU.CP-R	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.861674
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.907573
H3K36me3_U2OS_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_BJ_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
20028859-TableS2	GeneSigDB Published Gene Signatures	1.0	null
CAPAN-1	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.80395
neoplasms	GeneRIF Biological Term Annotations	1.0	null
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25965
H3K4me1_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
epithelial	GeneRIF Biological Term Annotations	1.0	null
PA-TU-8988S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.18866
MIAPACA2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32867
HDLM2	CCLE Cell Line Gene CNV Profiles	1.0	1.5772
invasion	GeneRIF Biological Term Annotations	1.0	null
G130	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33698
cerebral	GeneRIF Biological Term Annotations	1.0	null
suggesting	GeneRIF Biological Term Annotations	1.0	null
PRDM1	ENCODE Transcription Factor Targets	1.0	null