association	dataset	threshold value	standardized value
Inflammation	CTD Gene-Disease Associations	1.0	1.06152
all	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mutated	GeneRIF Biological Term Annotations	1.0	null
EZH2_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
did	GeneRIF Biological Term Annotations	1.0	null
normal	GeneRIF Biological Term Annotations	1.0	null
aberrant	GeneRIF Biological Term Annotations	1.0	null
clocks	GeneRIF Biological Term Annotations	1.0	null
hypoxia	GeneRIF Biological Term Annotations	1.0	null
SW 1990	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.08717
RBBP5	ENCODE Transcription Factor Targets	1.0	null
pdac	GeneRIF Biological Term Annotations	1.0	null
vivo	GeneRIF Biological Term Annotations	1.0	null
20028859-TableS2	GeneSigDB Published Gene Signatures	1.0	null
Liver Neoplasms, Experimental	CTD Gene-Disease Associations	1.0	1.01663
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.915545
activating	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_megakaryocyte_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62673
H3K4me1_bone marrow_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
targets	GeneRIF Biological Term Annotations	1.0	null
pancreatic	GeneRIF Biological Term Annotations	1.0	null
mir665	GeneRIF Biological Term Annotations	1.0	null
loss	GeneRIF Biological Term Annotations	1.0	null
regulatory	GeneRIF Biological Term Annotations	1.0	null
NCI-H2452	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21315
VMRCRCZ	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32404
SF539	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.845399
mir223	GeneRIF Biological Term Annotations	1.0	null
regulators	GeneRIF Biological Term Annotations	1.0	null
HOP92	CCLE Cell Line Gene CNV Profiles	-1.0	-1.9435
19895320-Table1	GeneSigDB Published Gene Signatures	1.0	null
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.9513
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14688
TUHR4TKB	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39928
TE-6	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
igf2bp1	GeneRIF Biological Term Annotations	1.0	null
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9me3_erythroblast_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
L363	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49662
blood	GeneRIF Biological Term Annotations	1.0	null
neurodegeneration	GeneRIF Biological Term Annotations	1.0	null
microrna	GeneRIF Biological Term Annotations	1.0	null
targeted	GeneRIF Biological Term Annotations	1.0	null
heart	GeneRIF Biological Term Annotations	1.0	null
lung	GeneRIF Biological Term Annotations	1.0	null
kit	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_G1E_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
leads	GeneRIF Biological Term Annotations	1.0	null
mirna320a	GeneRIF Biological Term Annotations	1.0	null
KARPAS-422	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41336
negatively	GeneRIF Biological Term Annotations	1.0	null
enhanced	GeneRIF Biological Term Annotations	1.0	null
Fatty Liver	CTD Gene-Disease Associations	1.0	1.25245
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25679
promising	GeneRIF Biological Term Annotations	1.0	null
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
cycle	GeneRIF Biological Term Annotations	1.0	null
Neurobehavioral Manifestations	CTD Gene-Disease Associations	1.0	1.04868
induced	GeneRIF Biological Term Annotations	1.0	null
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.996031
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.66817
Neoplasms	CTD Gene-Disease Associations	1.0	1.31716
HDAC2	ENCODE Transcription Factor Targets	1.0	null
regulating	GeneRIF Biological Term Annotations	1.0	null
MKN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.928343
hif1alpha	GeneRIF Biological Term Annotations	1.0	null
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07428
epithelium	GeneRIF Biological Term Annotations	1.0	null
regulator	GeneRIF Biological Term Annotations	1.0	null
lowering	GeneRIF Biological Term Annotations	1.0	null
HCC2935	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55679
NCIN87	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47307
NCIH1437	CCLE Cell Line Gene CNV Profiles	1.0	1.63752
H3K36me3_brain_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2AFZ_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
whole	GeneRIF Biological Term Annotations	1.0	null
adenocarcinoma	GeneRIF Biological Term Annotations	1.0	null
signals	GeneRIF Biological Term Annotations	1.0	null
HCC4006	CCLE Cell Line Gene CNV Profiles	1.0	1.55497
mir487b	GeneRIF Biological Term Annotations	1.0	null
angiogenesis	GeneRIF Biological Term Annotations	1.0	null
mir495	GeneRIF Biological Term Annotations	1.0	null
OVMANA	CCLE Cell Line Gene CNV Profiles	-1.0	-1.62654
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07499
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03039
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29362
deltaf508	GeneRIF Biological Term Annotations	1.0	null
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09496
SNU-719	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.853051
mir3651	GeneRIF Biological Term Annotations	1.0	null
slightly	GeneRIF Biological Term Annotations	1.0	null
antioncogene	GeneRIF Biological Term Annotations	1.0	null
KDM5A	ENCODE Transcription Factor Targets	1.0	null
hypoxiainduced	GeneRIF Biological Term Annotations	1.0	null
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
survivin	GeneRIF Biological Term Annotations	1.0	null
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09496
HDAC2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HOP-92	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.67331
SCC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29362
OSC-19	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
cb2	GeneRIF Biological Term Annotations	1.0	null
suggested	GeneRIF Biological Term Annotations	1.0	null
SF268	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.25687
exerted	GeneRIF Biological Term Annotations	1.0	null
action	GeneRIF Biological Term Annotations	1.0	null
led	GeneRIF Biological Term Annotations	1.0	null
downregulated	GeneRIF Biological Term Annotations	1.0	null
urinary	GeneRIF Biological Term Annotations	1.0	null
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.12323
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.937864
DMS79	CCLE Cell Line Gene CNV Profiles	1.0	1.61174
JL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39195
radiotherapy	GeneRIF Biological Term Annotations	1.0	null
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03039
TE10	CCLE Cell Line Gene CNV Profiles	1.0	1.93904
OVCAR5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45835
HCC1319	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.31136
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.928343
RBBP5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
T3M10	CCLE Cell Line Gene CNV Profiles	1.0	2.68901
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35242
OVMANA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51718
downregulation	GeneRIF Biological Term Annotations	1.0	null
overexpression	GeneRIF Biological Term Annotations	1.0	null
well	GeneRIF Biological Term Annotations	1.0	null
a549	GeneRIF Biological Term Annotations	1.0	null
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	1.06406
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
U138MG	CCLE Cell Line Gene CNV Profiles	-1.0	-2.01108
H4K20me1_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09496
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.864172
oral	GeneRIF Biological Term Annotations	1.0	null
JHH-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24698
SCC4	CCLE Cell Line Gene CNV Profiles	1.0	1.92103
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24698
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.864172
correlates	GeneRIF Biological Term Annotations	1.0	null
SNU1079	CCLE Cell Line Gene CNV Profiles	-1.0	-2.3159
bronchial	GeneRIF Biological Term Annotations	1.0	null
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11892
c-Ets-1	MotifMap Predicted Transcription Factor Targets	1.0	null
gastric	GeneRIF Biological Term Annotations	1.0	null
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09878
H3K4me3_megakaryocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
SW1710	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42073
888	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.79835
cellautonomous	GeneRIF Biological Term Annotations	1.0	null
Liver Neoplasms	CTD Gene-Disease Associations	1.0	1.32637
cxcr4	GeneRIF Biological Term Annotations	1.0	null
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
SUM 52PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.831523
Cell Transformation, Neoplastic	CTD Gene-Disease Associations	1.0	1.28858
igf2	GeneRIF Biological Term Annotations	1.0	null
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.984744
JIYOYE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55883
mirnas	GeneRIF Biological Term Annotations	1.0	null
overexpressed	GeneRIF Biological Term Annotations	1.0	null
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.897241
BT-483	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.937864
Prenatal Exposure Delayed Effects	CTD Gene-Disease Associations	1.0	1.42183
temporal	GeneRIF Biological Term Annotations	1.0	null
BICR16	CCLE Cell Line Gene CNV Profiles	1.0	2.19106
under	GeneRIF Biological Term Annotations	1.0	null
individuals	GeneRIF Biological Term Annotations	1.0	null
modulation	GeneRIF Biological Term Annotations	1.0	null
transformation	GeneRIF Biological Term Annotations	1.0	null
19503096-Figure1ab	GeneSigDB Published Gene Signatures	1.0	null
specific	GeneRIF Biological Term Annotations	1.0	null
women	GeneRIF Biological Term Annotations	1.0	null
COV644	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.2387
hur	GeneRIF Biological Term Annotations	1.0	null
estrogenmediated	GeneRIF Biological Term Annotations	1.0	null
HDAC6_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
had	GeneRIF Biological Term Annotations	1.0	null
betacatenin	GeneRIF Biological Term Annotations	1.0	null
than	GeneRIF Biological Term Annotations	1.0	null
EBNA2-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
previously	GeneRIF Biological Term Annotations	1.0	null
kidney	GeneRIF Biological Term Annotations	1.0	null
KNS81	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39691
ductal	GeneRIF Biological Term Annotations	1.0	null
Lung Neoplasms	CTD Gene-Disease Associations	1.0	1.30117
H3K4me3_G1E_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
local	GeneRIF Biological Term Annotations	1.0	null
JHOM1	CCLE Cell Line Gene CNV Profiles	1.0	1.34048
competed	GeneRIF Biological Term Annotations	1.0	null
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
H3K4me3_CH12.LX_mm9_5	ENCODE Histone Modification Site Profiles	1.0	null
concludes	GeneRIF Biological Term Annotations	1.0	null
inhibition	GeneRIF Biological Term Annotations	1.0	null
Drug-Related Side Effects and Adverse Reactions	CTD Gene-Disease Associations	1.0	1.08904
NCIH522	CCLE Cell Line Gene CNV Profiles	1.0	1.4856
H3K27me3_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
endometrium	GeneRIF Biological Term Annotations	1.0	null
approach	GeneRIF Biological Term Annotations	1.0	null
higher	GeneRIF Biological Term Annotations	1.0	null
upregulation	GeneRIF Biological Term Annotations	1.0	null
loop	GeneRIF Biological Term Annotations	1.0	null
carrying	GeneRIF Biological Term Annotations	1.0	null
Hypertrophy	CTD Gene-Disease Associations	1.0	1.24874
mir665in	GeneRIF Biological Term Annotations	1.0	null
Necrosis	CTD Gene-Disease Associations	1.0	1.17202
Memory Disorders	CTD Gene-Disease Associations	1.0	1.38641
H2AFZ_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18434
TE6	CCLE Cell Line Gene CNV Profiles	1.0	2.01969
samples	GeneRIF Biological Term Annotations	1.0	null
nuclear	GeneRIF Biological Term Annotations	1.0	null
Adenoma	CTD Gene-Disease Associations	1.0	1.19574
circadian	GeneRIF Biological Term Annotations	1.0	null
mir329	GeneRIF Biological Term Annotations	1.0	null
ectopic	GeneRIF Biological Term Annotations	1.0	null
SNU1076	CCLE Cell Line Gene CNV Profiles	1.0	1.37084
H3K4me3_megakaryocyte_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
mir4943p	GeneRIF Biological Term Annotations	1.0	null
transition	GeneRIF Biological Term Annotations	1.0	null
micrornas	GeneRIF Biological Term Annotations	1.0	null
synthesis	GeneRIF Biological Term Annotations	1.0	null
CBX2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H4K20me1_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
L-363	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.76467
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01888
CTCF_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
STAT3	MotifMap Predicted Transcription Factor Targets	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
pi3kakt	GeneRIF Biological Term Annotations	1.0	null
fertile	GeneRIF Biological Term Annotations	1.0	null
gap	GeneRIF Biological Term Annotations	1.0	null
SKMEL1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.72184
reduced	GeneRIF Biological Term Annotations	1.0	null
COLO680N	CCLE Cell Line Gene CNV Profiles	1.0	1.69015
HCC4006	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46662
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03039
JL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.66817
mir145	GeneRIF Biological Term Annotations	1.0	null
normoxia	GeneRIF Biological Term Annotations	1.0	null
HDAC6	ENCODE Transcription Factor Targets	1.0	null
localization	GeneRIF Biological Term Annotations	1.0	null
G84	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17267
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
part	GeneRIF Biological Term Annotations	1.0	null
K029AX	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43579
stromal	GeneRIF Biological Term Annotations	1.0	null
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24698
REST_01_145	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	0.59387
H4K20me1_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K36me3_Breast Myoepithelial Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
chronic	GeneRIF Biological Term Annotations	1.0	null
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.928343
PC14	CCLE Cell Line Gene CNV Profiles	-1.0	-2.76795
NCIH3255	CCLE Cell Line Gene CNV Profiles	1.0	1.66137
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.835215
MM.1S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.58375
chf	GeneRIF Biological Term Annotations	1.0	null
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.996031
aids	GeneRIF Biological Term Annotations	1.0	null
diseased	GeneRIF Biological Term Annotations	1.0	null
downstream	GeneRIF Biological Term Annotations	1.0	null
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07499
negative	GeneRIF Biological Term Annotations	1.0	null
least	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.880312
concerted	GeneRIF Biological Term Annotations	1.0	null
egfr	GeneRIF Biological Term Annotations	1.0	null
present	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gists	GeneRIF Biological Term Annotations	1.0	null
tumors	GeneRIF Biological Term Annotations	1.0	null
compensatory	GeneRIF Biological Term Annotations	1.0	null
their	GeneRIF Biological Term Annotations	1.0	null
contribute	GeneRIF Biological Term Annotations	1.0	null
mir1423p	GeneRIF Biological Term Annotations	1.0	null
LN443	CCLE Cell Line Gene CNV Profiles	1.0	1.34938
Ets	MotifMap Predicted Transcription Factor Targets	1.0	null
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.928343
suppressed	GeneRIF Biological Term Annotations	1.0	null
failure	GeneRIF Biological Term Annotations	1.0	null
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36749
POLR2A	ENCODE Transcription Factor Targets	1.0	null
controls	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
myocardium	GeneRIF Biological Term Annotations	1.0	null
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18434
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.76417
CTCF	ENCODE Transcription Factor Targets	1.0	null
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.984744
SK-CO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35711
BT483	CCLE Cell Line Gene CNV Profiles	1.0	1.55014
foxm1	GeneRIF Biological Term Annotations	1.0	null
apoptosis	GeneRIF Biological Term Annotations	1.0	null
EM2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36205
upregulated	GeneRIF Biological Term Annotations	1.0	null
resistance	GeneRIF Biological Term Annotations	1.0	null
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.880312
NCI-H716	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62673
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
erk12	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.98592
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.928343
multiple	GeneRIF Biological Term Annotations	1.0	null
NCIH28	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44618
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17102
POLR2A_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hepatocellular	GeneRIF Biological Term Annotations	1.0	null
SNU-638	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.76519
suppressing	GeneRIF Biological Term Annotations	1.0	null
receptors	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Poisoning	CTD Gene-Disease Associations	1.0	1.01663
posttranscriptional	GeneRIF Biological Term Annotations	1.0	null
SNU601	CCLE Cell Line Gene CNV Profiles	-1.0	-1.83501
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07499
mmp9mir494sdc1	GeneRIF Biological Term Annotations	1.0	null
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03039
p190b	GeneRIF Biological Term Annotations	1.0	null
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.880312
suppressor	GeneRIF Biological Term Annotations	1.0	null
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62673
effects	GeneRIF Biological Term Annotations	1.0	null
nucleolin	GeneRIF Biological Term Annotations	1.0	null
inflammation	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25679
injury	GeneRIF Biological Term Annotations	1.0	null
smad4	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_G1E_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
overexpressing	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Learning Disorders	CTD Gene-Disease Associations	1.0	1.44982
protective	GeneRIF Biological Term Annotations	1.0	null
JIMT-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.19784
treatment	GeneRIF Biological Term Annotations	1.0	null
Kidney Diseases	CTD Gene-Disease Associations	1.0	1.19179
prostate	GeneRIF Biological Term Annotations	1.0	null
mir494	GeneRIF Biological Term Annotations	1.0	null
functionally	GeneRIF Biological Term Annotations	1.0	null
acts	GeneRIF Biological Term Annotations	1.0	null
JIMT1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.22326
respectively	GeneRIF Biological Term Annotations	1.0	null
NCI-H1304	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
decreased	GeneRIF Biological Term Annotations	1.0	null
tnfalphamediated	GeneRIF Biological Term Annotations	1.0	null
EJM	CCLE Cell Line Gene CNV Profiles	1.0	2.78169
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25679
insulin	GeneRIF Biological Term Annotations	1.0	null
A3/KAW	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29362
cmyc	GeneRIF Biological Term Annotations	1.0	null
proliferation	GeneRIF Biological Term Annotations	1.0	null
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulated	GeneRIF Biological Term Annotations	1.0	null
g1s	GeneRIF Biological Term Annotations	1.0	null
SW 48	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18732
telaml1	GeneRIF Biological Term Annotations	1.0	null
CBX2	ENCODE Transcription Factor Targets	1.0	null
gist	GeneRIF Biological Term Annotations	1.0	null
crucial	GeneRIF Biological Term Annotations	1.0	null
NCIH2141	CCLE Cell Line Gene CNV Profiles	1.0	2.07201
KELLY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40349
affect	GeneRIF Biological Term Annotations	1.0	null
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.915545
causing	GeneRIF Biological Term Annotations	1.0	null
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.880312
VMRCRCW	CCLE Cell Line Gene CNV Profiles	-1.0	-1.94779
Hyperplasia	CTD Gene-Disease Associations	1.0	1.09857
squamous	GeneRIF Biological Term Annotations	1.0	null
acute	GeneRIF Biological Term Annotations	1.0	null
Carcinoma	CTD Gene-Disease Associations	1.0	1.23743
AGS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29362
H4K20me1_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H2461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11369
altered	GeneRIF Biological Term Annotations	1.0	null
described	GeneRIF Biological Term Annotations	1.0	null
axis	GeneRIF Biological Term Annotations	1.0	null
cftr	GeneRIF Biological Term Annotations	1.0	null
EBC1	CCLE Cell Line Gene CNV Profiles	1.0	1.49472
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18594
mir494induced	GeneRIF Biological Term Annotations	1.0	null
G122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.925415
TE-10	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
NCI-H1694	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
Precancerous Conditions	CTD Gene-Disease Associations	1.0	1.10246
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36749
cb1	GeneRIF Biological Term Annotations	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.981961
endothelial	GeneRIF Biological Term Annotations	1.0	null
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01888
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23953
SNU-398	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62673
arterial	GeneRIF Biological Term Annotations	1.0	null
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08103
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.996031
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00537
malignancy	GeneRIF Biological Term Annotations	1.0	null
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.925415
approximately	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_iPS DF 19.11	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29362
retardation	GeneRIF Biological Term Annotations	1.0	null
mirna494	GeneRIF Biological Term Annotations	1.0	null
bim	GeneRIF Biological Term Annotations	1.0	null
receptive	GeneRIF Biological Term Annotations	1.0	null
exacerbate	GeneRIF Biological Term Annotations	1.0	null
WHSC1	ENCODE Transcription Factor Targets	1.0	null
exacerbates	GeneRIF Biological Term Annotations	1.0	null
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35242
A704	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64414
HCC2218	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.835007
EZH2_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH1581	CCLE Cell Line Gene CNV Profiles	1.0	1.71674
PECAPJ34CLONEC12	CCLE Cell Line Gene CNV Profiles	1.0	1.40221
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05809
against	GeneRIF Biological Term Annotations	1.0	null
NCIH1694	CCLE Cell Line Gene CNV Profiles	1.0	2.22951
coordination	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_erythroblast_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
WHSC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
contributing	GeneRIF Biological Term Annotations	1.0	null
l02	GeneRIF Biological Term Annotations	1.0	null
cis	GeneRIF Biological Term Annotations	1.0	null
antiapoptotic	GeneRIF Biological Term Annotations	1.0	null
global	GeneRIF Biological Term Annotations	1.0	null
destiny	GeneRIF Biological Term Annotations	1.0	null
exert	GeneRIF Biological Term Annotations	1.0	null
induces	GeneRIF Biological Term Annotations	1.0	null
link	GeneRIF Biological Term Annotations	1.0	null
ATM_KD_GSE54268_662_human_MCF-10A	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
gastrointestinal	GeneRIF Biological Term Annotations	1.0	null
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.925415
COV644	CCLE Cell Line Gene CNV Profiles	-1.0	-1.8162
SF268	CCLE Cell Line Gene CNV Profiles	1.0	1.61606
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.835215
colorectal	GeneRIF Biological Term Annotations	1.0	null
targeting	GeneRIF Biological Term Annotations	1.0	null
HCC2935	CCLE Cell Line Gene CNV Profiles	1.0	1.4083
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07428
transacting	GeneRIF Biological Term Annotations	1.0	null
TK-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.96436
MELJUSO	CCLE Cell Line Gene CNV Profiles	-1.0	-1.80005
dj1	GeneRIF Biological Term Annotations	1.0	null
mir186	GeneRIF Biological Term Annotations	1.0	null