association	dataset	threshold value	standardized value
HUPT4	CCLE Cell Line Gene CNV Profiles	1.0	1.78896
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.860996
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03881
loss	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15757
NCIH2073	CCLE Cell Line Gene CNV Profiles	1.0	2.00743
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19403
SUDHL10	CCLE Cell Line Gene CNV Profiles	1.0	2.39
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21886
ovarian	GeneRIF Biological Term Annotations	1.0	null
PXR (PXR:RXR)	MotifMap Predicted Transcription Factor Targets	1.0	null
cdk4	GeneRIF Biological Term Annotations	1.0	null
HCC38	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
KMS18	CCLE Cell Line Gene CNV Profiles	-1.0	-2.3514
H3K9me3_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
nras	GeneRIF Biological Term Annotations	1.0	null
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CAL78	CCLE Cell Line Gene CNV Profiles	1.0	1.36809
concluded	GeneRIF Biological Term Annotations	1.0	null
inhibited	GeneRIF Biological Term Annotations	1.0	null
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39213
H3K9me3_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PK45H	CCLE Cell Line Gene CNV Profiles	1.0	1.59301
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45228
SKMES1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43933
Neoplasms, Experimental	CTD Gene-Disease Associations	1.0	2.88009
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52951
FOS	ENCODE Transcription Factor Targets	1.0	null
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.8359
epithelial	GeneRIF Biological Term Annotations	1.0	null
HCC1937	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35676
CEBPB	ENCODE Transcription Factor Targets	1.0	null
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11894
indicates	GeneRIF Biological Term Annotations	1.0	null
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10951
upregulated	GeneRIF Biological Term Annotations	1.0	null
control	GeneRIF Biological Term Annotations	1.0	null
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58012
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.890065
19895320-Table1	GeneSigDB Published Gene Signatures	1.0	null
BHT101	CCLE Cell Line Gene CNV Profiles	1.0	1.61053
activated	GeneRIF Biological Term Annotations	1.0	null
1321N1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67564
transformed	GeneRIF Biological Term Annotations	1.0	null
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0058
AU565	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53958
provides	GeneRIF Biological Term Annotations	1.0	null
reduced	GeneRIF Biological Term Annotations	1.0	null
lung	GeneRIF Biological Term Annotations	1.0	null
antioncogene	GeneRIF Biological Term Annotations	1.0	null
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.946989
killing	GeneRIF Biological Term Annotations	1.0	null
regulate	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
YAPC	CCLE Cell Line Gene CNV Profiles	1.0	1.57987
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22744
LN-229	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848678
SNU1077	CCLE Cell Line Gene CNV Profiles	-1.0	-2.05859
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.947678
regulator	GeneRIF Biological Term Annotations	1.0	null
insight	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
insp3r3mediated	GeneRIF Biological Term Annotations	1.0	null
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05092
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.957352
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3843
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03205
further	GeneRIF Biological Term Annotations	1.0	null
transition	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
OCIMY7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64012
TF1	CCLE Cell Line Gene CNV Profiles	1.0	1.70058
CTCF	ENCODE Transcription Factor Targets	1.0	null
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.904096
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2734
IGR1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.82482
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.8045
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09571
SKMEL3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73734
biliary	GeneRIF Biological Term Annotations	1.0	null
JHOS2	CCLE Cell Line Gene CNV Profiles	1.0	1.51476
OVCAR433	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.51095
impaired	GeneRIF Biological Term Annotations	1.0	null
COLO 794	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.836724
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1517
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
SKES1	CCLE Cell Line Gene CNV Profiles	1.0	1.44363
mir506	GeneRIF Biological Term Annotations	1.0	null
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29256
region	GeneRIF Biological Term Annotations	1.0	null
mimics	GeneRIF Biological Term Annotations	1.0	null
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
key	GeneRIF Biological Term Annotations	1.0	null
RERFLCAD2	CCLE Cell Line Gene CNV Profiles	1.0	2.53182
FOS_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2AFZ_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
metastasis	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10951
normal	GeneRIF Biological Term Annotations	1.0	null
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29184
FADU	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3287
NCIH2172	CCLE Cell Line Gene CNV Profiles	-1.0	-2.03325
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.20855
ecadherin	GeneRIF Biological Term Annotations	1.0	null
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.947678
binds	GeneRIF Biological Term Annotations	1.0	null
FOXA1_OE_GDS4957_144_human_LNCaP prostate cancer cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
treatment	GeneRIF Biological Term Annotations	1.0	null
secretion	GeneRIF Biological Term Annotations	1.0	null
selective	GeneRIF Biological Term Annotations	1.0	null
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22818
secretory	GeneRIF Biological Term Annotations	1.0	null
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.91402
into	GeneRIF Biological Term Annotations	1.0	null
malignant	GeneRIF Biological Term Annotations	1.0	null
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848678
translation	GeneRIF Biological Term Annotations	1.0	null
direct	GeneRIF Biological Term Annotations	1.0	null
newly	GeneRIF Biological Term Annotations	1.0	null
cdk46foxm1	GeneRIF Biological Term Annotations	1.0	null
carcinomas	GeneRIF Biological Term Annotations	1.0	null
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03205
NCIH1105	CCLE Cell Line Gene CNV Profiles	1.0	1.87144
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.959521
signalling	GeneRIF Biological Term Annotations	1.0	null
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1517
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.7537
tumorigenesis	GeneRIF Biological Term Annotations	1.0	null
CCK-81	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.83684
prevents	GeneRIF Biological Term Annotations	1.0	null
bronchial	GeneRIF Biological Term Annotations	1.0	null
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.0013
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.824896
NCIH889	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73922
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03205
MKN45	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43732
demonstrated	GeneRIF Biological Term Annotations	1.0	null
HS695T	CCLE Cell Line Gene CNV Profiles	1.0	2.09606
H3K9me3_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
primary	GeneRIF Biological Term Annotations	1.0	null
ae2	GeneRIF Biological Term Annotations	1.0	null
molecule	GeneRIF Biological Term Annotations	1.0	null
cdk6	GeneRIF Biological Term Annotations	1.0	null
class	GeneRIF Biological Term Annotations	1.0	null
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02391
NCIH1355	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39839
agent	GeneRIF Biological Term Annotations	1.0	null
VMRCLCD	CCLE Cell Line Gene CNV Profiles	1.0	1.34727
HCC1599	CCLE Cell Line Gene CNV Profiles	1.0	2.20827
RPMI7951	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39964
NCIH1651	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34941
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.876662
NCIH841	CCLE Cell Line Gene CNV Profiles	-1.0	-1.92734
BICR18	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44864
cirrhosis	GeneRIF Biological Term Annotations	1.0	null
SNUC5	CCLE Cell Line Gene CNV Profiles	1.0	1.61655
pathogenesis	GeneRIF Biological Term Annotations	1.0	null
represents	GeneRIF Biological Term Annotations	1.0	null
SNU324	CCLE Cell Line Gene CNV Profiles	1.0	1.40467
H3K9me3_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.65996
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.904096
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.095
SK-MEL-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.67751
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.947678
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05092
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66115
A172	CCLE Cell Line Gene CNV Profiles	1.0	1.46325
mir506gli3	GeneRIF Biological Term Annotations	1.0	null
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848678
functions	GeneRIF Biological Term Annotations	1.0	null
FOXD1	JASPAR Predicted Transcription Factor Targets	1.0	null
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52951
NCIH2087	CCLE Cell Line Gene CNV Profiles	1.0	1.44721
POLR2A	ENCODE Transcription Factor Targets	1.0	null
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.946989
SW1271	CCLE Cell Line Gene CNV Profiles	1.0	1.47251
diminished	GeneRIF Biological Term Annotations	1.0	null
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06992
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50023
DMS114	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54465
emtrelated	GeneRIF Biological Term Annotations	1.0	null
HCC1534	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.62306
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.959521
implicating	GeneRIF Biological Term Annotations	1.0	null
process	GeneRIF Biological Term Annotations	1.0	null
negatively	GeneRIF Biological Term Annotations	1.0	null
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05092
investigation	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-3	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.83684
majority	GeneRIF Biological Term Annotations	1.0	null
DMS 454	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.860996
CAL12T	CCLE Cell Line Gene CNV Profiles	1.0	1.74369
compared	GeneRIF Biological Term Annotations	1.0	null
GSU	CCLE Cell Line Gene CNV Profiles	1.0	1.45174
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.46961
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57891
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14884
emt	GeneRIF Biological Term Annotations	1.0	null
targets	GeneRIF Biological Term Annotations	1.0	null
FOXA1_OE_GDS4957_10_human_LNCaP prostate cancer cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
CEBPB_IMR-90_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
axis	GeneRIF Biological Term Annotations	1.0	null
inhibit	GeneRIF Biological Term Annotations	1.0	null
SKBR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60916
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.91402
BT474	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49107
cervical	GeneRIF Biological Term Annotations	1.0	null
CCK81	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.72438
ca2	GeneRIF Biological Term Annotations	1.0	null
vivo	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EJM	CCLE Cell Line Gene CNV Profiles	1.0	1.93524
NCIH727	CCLE Cell Line Gene CNV Profiles	-1.0	-1.84911
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.957352
H3K9me3_Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.890731
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.095
therapeutic	GeneRIF Biological Term Annotations	1.0	null
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.985858
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.838039
suppression	GeneRIF Biological Term Annotations	1.0	null
epithelialtomesenchymal	GeneRIF Biological Term Annotations	1.0	null
NUGC4	CCLE Cell Line Gene CNV Profiles	1.0	1.34952
HEC251	CCLE Cell Line Gene CNV Profiles	1.0	1.77028
leading	GeneRIF Biological Term Annotations	1.0	null
mirna	GeneRIF Biological Term Annotations	1.0	null
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19419
insp3r3	GeneRIF Biological Term Annotations	1.0	null
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.904096
posttranslational	GeneRIF Biological Term Annotations	1.0	null
KE97	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.8359
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.959521
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.860996
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.20855
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848678
serous	GeneRIF Biological Term Annotations	1.0	null
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14058
DMS454	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20312
seems	GeneRIF Biological Term Annotations	1.0	null
A3KAW	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5528