association	dataset	threshold value	standardized value
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04451
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.76967
NCIH1105	CCLE Cell Line Gene CNV Profiles	1.0	1.87144
GSU	CCLE Cell Line Gene CNV Profiles	1.0	1.45174
TF1	CCLE Cell Line Gene CNV Profiles	1.0	1.70058
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12515
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.947678
formation	GeneRIF Biological Term Annotations	1.0	null
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23996
PK45H	CCLE Cell Line Gene CNV Profiles	1.0	1.59301
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31647
POLR2A_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08387
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.967452
AP-2rep	MotifMap Predicted Transcription Factor Targets	1.0	null
1321N1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67564
BICR18	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44864
HDAC6	ENCODE Transcription Factor Targets	1.0	null
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854872
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.969707
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.897832
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.997061
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31573
A3KAW	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5528
POLR2A	ENCODE Transcription Factor Targets	1.0	null
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.92319
OVCAR433	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53748
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52717
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21418
STAT3_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.841633
SNU1077	CCLE Cell Line Gene CNV Profiles	-1.0	-2.05859
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29673
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.68
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14884
SKMES1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43933
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.904096
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52951
CAL78	CCLE Cell Line Gene CNV Profiles	1.0	1.36809
diagnostic	GeneRIF Biological Term Annotations	1.0	null
nicm	GeneRIF Biological Term Annotations	1.0	null
serve	GeneRIF Biological Term Annotations	1.0	null
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05092
DMS114	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54465
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0058
HUPT4	CCLE Cell Line Gene CNV Profiles	1.0	1.78896
outcome	GeneRIF Biological Term Annotations	1.0	null
A172	CCLE Cell Line Gene CNV Profiles	1.0	1.46325
ZNF384_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9me3_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
HCC1534	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.62306
COLO 794	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.836724
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03616
RPMI7951	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39964
NCIH2172	CCLE Cell Line Gene CNV Profiles	-1.0	-2.03325
CTCF	ENCODE Transcription Factor Targets	1.0	null
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.830274
SKBR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60916
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.89852
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.47002
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.81802
mirnas	GeneRIF Biological Term Annotations	1.0	null
mdr	GeneRIF Biological Term Annotations	1.0	null
NUGC4	CCLE Cell Line Gene CNV Profiles	1.0	1.34952
HCC38	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
NCIH2087	CCLE Cell Line Gene CNV Profiles	1.0	1.44721
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04451
mir5085p	GeneRIF Biological Term Annotations	1.0	null
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.969707
STAT3	ENCODE Transcription Factor Targets	1.0	null
BHT101	CCLE Cell Line Gene CNV Profiles	1.0	1.61053
SNU324	CCLE Cell Line Gene CNV Profiles	1.0	1.40467
chf	GeneRIF Biological Term Annotations	1.0	null
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.860996
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41913
SW1271	CCLE Cell Line Gene CNV Profiles	1.0	1.47251
NCIH889	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73922
loop	GeneRIF Biological Term Annotations	1.0	null
mir126	GeneRIF Biological Term Annotations	1.0	null
played	GeneRIF Biological Term Annotations	1.0	null
icm	GeneRIF Biological Term Annotations	1.0	null
regulatory	GeneRIF Biological Term Annotations	1.0	null
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.946989
LN-229	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854872
KE97	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
markers	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.67751
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19403
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.72438
NCIH841	CCLE Cell Line Gene CNV Profiles	-1.0	-1.92734
rcc	GeneRIF Biological Term Annotations	1.0	null
H3K9me3_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
JHOS2	CCLE Cell Line Gene CNV Profiles	1.0	1.51476
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.68114
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17562
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.838039
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.946989
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16944
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24965
mir5083p	GeneRIF Biological Term Annotations	1.0	null
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.095
they	GeneRIF Biological Term Annotations	1.0	null
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05143
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41109
NCIH2073	CCLE Cell Line Gene CNV Profiles	1.0	2.00743
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854872
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52951
STAT3_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
YAPC	CCLE Cell Line Gene CNV Profiles	1.0	1.57987
SK-MEL-3	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.83684
FADU	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3287
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.947678
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04451
NCIH727	CCLE Cell Line Gene CNV Profiles	-1.0	-1.84911
SNUC5	CCLE Cell Line Gene CNV Profiles	1.0	1.61655
CCK81	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
mir5093p	GeneRIF Biological Term Annotations	1.0	null
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09571
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.095
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.947678
H3K9me3_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854872
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.883979
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.969707
SUDHL10	CCLE Cell Line Gene CNV Profiles	1.0	2.39
ZNF384	ENCODE Transcription Factor Targets	1.0	null
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.0071
RERFLCAD2	CCLE Cell Line Gene CNV Profiles	1.0	2.53182
critical	GeneRIF Biological Term Annotations	1.0	null
VMRCLCD	CCLE Cell Line Gene CNV Profiles	1.0	1.34727
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
KLF7_01_342	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	1.65863
CCK-81	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.83684
OCIMY7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64012
HCC1937	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35676
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.60323
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.841633
20028859-TableS2	GeneSigDB Published Gene Signatures	1.0	null
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.47958
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05092
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
SKES1	CCLE Cell Line Gene CNV Profiles	1.0	1.44363
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.967452
SKMEL3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73734
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16944
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14058
IGR1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.82482
gastric	GeneRIF Biological Term Annotations	1.0	null
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.904096
AU565	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53958
HEC251	CCLE Cell Line Gene CNV Profiles	1.0	1.77028
HS695T	CCLE Cell Line Gene CNV Profiles	1.0	2.09606
DMS 454	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.860996
HDAC6_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.92319
NCIH1651	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34941
KMS18	CCLE Cell Line Gene CNV Profiles	-1.0	-2.3514
EJM	CCLE Cell Line Gene CNV Profiles	1.0	1.93524
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.20855
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.904096
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24889
mir5085pznrd1abcb1	GeneRIF Biological Term Annotations	1.0	null
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.20855
DMS454	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20312
NCIH1355	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39839
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.860996
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12515
BT474	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49107
MKN45	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43732
CAL12T	CCLE Cell Line Gene CNV Profiles	1.0	1.74369
HCC1599	CCLE Cell Line Gene CNV Profiles	1.0	2.20827
suppressor	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13498
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05092