association	dataset	threshold value	standardized value
NCI-H2369	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.80574
NCIH1105	CCLE Cell Line Gene CNV Profiles	1.0	1.8715
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.967391
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854793
VMRCLCD	CCLE Cell Line Gene CNV Profiles	1.0	1.34725
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31568
BT474	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4911
HUPT4	CCLE Cell Line Gene CNV Profiles	1.0	1.78911
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29667
HCC1599	CCLE Cell Line Gene CNV Profiles	1.0	2.20832
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04446
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2496
PK45H	CCLE Cell Line Gene CNV Profiles	1.0	1.58599
A3KAW	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55286
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.7696
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24883
CTCF_LNCaP clone FGC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.81793
DMS 454	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851447
CTCF_GM10248_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828965
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4191
H3K9me3_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07961
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.06146
FADU	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32872
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13494
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.893688
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17557
NUGC4	CCLE Cell Line Gene CNV Profiles	1.0	1.34951
MKN45	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43735
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12511
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52716
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31641
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1235
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49326
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851447
MYC_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_GM13977_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.969645
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17533
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1694
COLO 794	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.82768
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03694
NCIH1355	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39831
SNU324	CCLE Cell Line Gene CNV Profiles	1.0	1.40452
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04446
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851447
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41105
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.92304
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.00692
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12511
CCK-81	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.7119
SKES1	CCLE Cell Line Gene CNV Profiles	1.0	1.44355
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03612
POLR2A	ENCODE Transcription Factor Targets	1.0	null
SNU1077	CCLE Cell Line Gene CNV Profiles	-1.0	-2.05868
BICR18	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4487
KMS18	CCLE Cell Line Gene CNV Profiles	-1.0	-2.3514
DMS454	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20312
NCIH2172	CCLE Cell Line Gene CNV Profiles	-1.0	-2.03316
NCIH727	CCLE Cell Line Gene CNV Profiles	-1.0	-1.84915
A172	CCLE Cell Line Gene CNV Profiles	1.0	1.46322
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.969645
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.936335
CCK81	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
SKMES1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43936
SKBR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60912
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.897757
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1315
SK-MEL-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62778
NCIH889	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73922
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854793
promoting	GeneRIF Biological Term Annotations	1.0	null
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.46976
LN-229	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854793
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67997
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.72421
TF1	CCLE Cell Line Gene CNV Profiles	1.0	1.70022
HCC1937	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3568
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04446
HEC251	CCLE Cell Line Gene CNV Profiles	1.0	1.77035
SUDHL10	CCLE Cell Line Gene CNV Profiles	1.0	2.38966
MYC	ENCODE Transcription Factor Targets	1.0	null
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.935662
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.893688
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.841554
HCC38	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854793
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.6811
JHOS2	CCLE Cell Line Gene CNV Profiles	1.0	1.51394
SNUC5	CCLE Cell Line Gene CNV Profiles	1.0	1.60975
HCC1534	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.80574
NCIH2073	CCLE Cell Line Gene CNV Profiles	1.0	2.00741
EJM	CCLE Cell Line Gene CNV Profiles	1.0	1.93523
BHT101	CCLE Cell Line Gene CNV Profiles	1.0	1.60354
RERFLCAD2	CCLE Cell Line Gene CNV Profiles	1.0	2.53239
inhibiting	GeneRIF Biological Term Annotations	1.0	null
USF1	JASPAR Predicted Transcription Factor Targets	1.0	null
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.47956
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.936335
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.935662
1321N1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67568
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.967391
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.06146
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03694
POLR2A_HGPS cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.60321
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.883901
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05139
CAL12T	CCLE Cell Line Gene CNV Profiles	1.0	1.74363
H2369	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.7119
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08029
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07961
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
AU565	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53958
NCIH841	CCLE Cell Line Gene CNV Profiles	-1.0	-1.9274
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1694
CTCF_medulloblastoma_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH2087	CCLE Cell Line Gene CNV Profiles	1.0	1.44714
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.841554
apoptosis	GeneRIF Biological Term Annotations	1.0	null
renal	GeneRIF Biological Term Annotations	1.0	null
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21414
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.969645
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.992999
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.893688
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49326
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.936335
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.898445
NCIH1651	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34944
proliferation	GeneRIF Biological Term Annotations	1.0	null
RPMI7951	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39955
mir5095p	GeneRIF Biological Term Annotations	1.0	null
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.997005
SKMEL3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73734
IGR1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.82474
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
SW1271	CCLE Cell Line Gene CNV Profiles	1.0	1.47248
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08382
OVCAR433	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53747
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.830195
GSU	CCLE Cell Line Gene CNV Profiles	1.0	1.45168
SK-MEL-3	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.7119
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03694
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.92304
OCIMY7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64013
HS695T	CCLE Cell Line Gene CNV Profiles	1.0	2.09606
CTCF	ENCODE Transcription Factor Targets	1.0	null
migration	GeneRIF Biological Term Annotations	1.0	null
NCIH1373	CCLE Cell Line Gene CNV Profiles	1.0	1.60164
DMS114	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54467
KE97	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
CAL78	CCLE Cell Line Gene CNV Profiles	1.0	1.36814
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23991