association	dataset	threshold value	standardized value
KELLY	CCLE Cell Line Gene CNV Profiles	1.0	1.36166
PANC0403	CCLE Cell Line Gene CNV Profiles	1.0	2.88145
SU-DHL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19383
SK-MEL-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02852
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05502
DU4475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.861193
brainexpressed	GeneRIF Biological Term Annotations	1.0	null
NCIH441	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52187
NCI-H2110	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.69693
suppressor	GeneRIF Biological Term Annotations	1.0	null
SK-CO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.849624
H3K4me1_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
models	GeneRIF Biological Term Annotations	1.0	null
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2669
CPCN	CCLE Cell Line Gene CNV Profiles	1.0	1.84782
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19283
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.886724
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01846
HTK	CCLE Cell Line Gene CNV Profiles	1.0	1.3548
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.927107
SMARCA4	ChEA Transcription Factor Targets	1.0	null
KLM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49509
H3K36me3_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HS839T	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41865
NCIH2228	CCLE Cell Line Gene CNV Profiles	1.0	2.66523
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49005
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28979
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.79572
trib2	GeneRIF Biological Term Annotations	1.0	null
tumorassociated	GeneRIF Biological Term Annotations	1.0	null
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
SNU-216	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12836
NCIH460	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73666
notably	GeneRIF Biological Term Annotations	1.0	null
NCIH1437	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51111
G112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.66391
DOV13	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59321
IGR37	CCLE Cell Line Gene CNV Profiles	-1.0	-2.06324
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69869
KMS-12-BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.824881
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41876
DMS79	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41648
COR-L47	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01846
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02973
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.9563
KASUMI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53854
PL-21	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02852
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.992736
KYSE-510	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.954918
JL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12796
COLO 853	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35126
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.926654
A498	CCLE Cell Line Gene CNV Profiles	-1.0	-1.88158
MXI1	ENCODE Transcription Factor Targets	1.0	null
K562	CCLE Cell Line Gene CNV Profiles	1.0	1.73955
HL-60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0747
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01105
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.938359
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49005
CL34	CCLE Cell Line Gene CNV Profiles	1.0	1.59303
KYSE-520	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.66336
CHL1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.2499
COLO 679	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0999
NCI-H2452	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.72597
MXI1_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DMS 454	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.78948
CTCF_spleen_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HS 683	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10276
COLO 857	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32205
MC116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34864
SF126	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61975
mir1297	GeneRIF Biological Term Annotations	1.0	null
CAKI2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5797
programs	GeneRIF Biological Term Annotations	1.0	null
HCC12	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.18726
thereby	GeneRIF Biological Term Annotations	1.0	null
C32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10276
CEBPB-20176806-THIOMACROPHAGE-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_bone marrow macrophage_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
C8166	CCLE Cell Line Gene CNV Profiles	1.0	1.37948
SMARCA4-23332759-OLIGODENDROCYTES-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
C170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0747
increasing	GeneRIF Biological Term Annotations	1.0	null
EKVX	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19169
EPLC272H	CCLE Cell Line Gene CNV Profiles	1.0	1.50263
a549	GeneRIF Biological Term Annotations	1.0	null
WM-115	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10276
RERFLCAD1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68016
rock2	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.887115
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.938359
RC-K8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15844
mouse	GeneRIF Biological Term Annotations	1.0	null
BEN	CCLE Cell Line Gene CNV Profiles	1.0	1.51384
NCI-H2595	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.04311
CAL-120	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.102
UACC257	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38702
FOXD1	JASPAR Predicted Transcription Factor Targets	1.0	null
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.825181
genetic	GeneRIF Biological Term Annotations	1.0	null
HT1197	CCLE Cell Line Gene CNV Profiles	1.0	2.1065
mirna	GeneRIF Biological Term Annotations	1.0	null
mecp2	GeneRIF Biological Term Annotations	1.0	null
downregulates	GeneRIF Biological Term Annotations	1.0	null
mrc1	GeneRIF Biological Term Annotations	1.0	null
SKM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.905792
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33056
SKLU1	CCLE Cell Line Gene CNV Profiles	1.0	1.43695
CAR-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.66391
TAL1-20887958-HPC-7-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
42MGBA	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48074
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.825325
HCA-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.65465
H3K36me3_liver_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
501A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47912
binds	GeneRIF Biological Term Annotations	1.0	null
NCIH2029	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34049
HS343T	CCLE Cell Line Gene CNV Profiles	1.0	1.33349
NCI-H196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.878694
59M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.19033
BXPC3	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
further	GeneRIF Biological Term Annotations	1.0	null
19895320-Table1	GeneSigDB Published Gene Signatures	1.0	null
SK-MEL-24	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.927107
DMS 53	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.48833
vitro	GeneRIF Biological Term Annotations	1.0	null
KMS-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07143
SNU-449	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.61545
SNU5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71898
SKUT1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33898
radioresistant	GeneRIF Biological Term Annotations	1.0	null
HCC1187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21729
CHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.850083
UACC893	CCLE Cell Line Gene CNV Profiles	1.0	1.65615
C3A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.878694
DOK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.849624
PDX1	JASPAR Predicted Transcription Factor Targets	1.0	null
macrophages	GeneRIF Biological Term Annotations	1.0	null
TC32	CCLE Cell Line Gene CNV Profiles	1.0	1.9814
carriers	GeneRIF Biological Term Annotations	1.0	null
G84	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44226
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.91691
RT4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.982821
act	GeneRIF Biological Term Annotations	1.0	null
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.47917
ES-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01105
TAL1	ChEA Transcription Factor Targets	1.0	null
MOR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.01177
lung	GeneRIF Biological Term Annotations	1.0	null
COLO792	CCLE Cell Line Gene CNV Profiles	1.0	1.3889
SEM	CCLE Cell Line Gene CNV Profiles	1.0	1.68062
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826024
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826024
cebpalpha	GeneRIF Biological Term Annotations	1.0	null
PRRX2	JASPAR Predicted Transcription Factor Targets	1.0	null
located	GeneRIF Biological Term Annotations	1.0	null
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.73345
rs2734647	GeneRIF Biological Term Annotations	1.0	null
D341MED	CCLE Cell Line Gene CNV Profiles	-1.0	-2.28446
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04779
encoded	GeneRIF Biological Term Annotations	1.0	null
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47864
HS819T	CCLE Cell Line Gene CNV Profiles	1.0	1.589
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11383
SU8686	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20608
SCC25	CCLE Cell Line Gene CNV Profiles	1.0	1.55397
CTCF	ENCODE Transcription Factor Targets	1.0	null
NCI-H1155	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.18726
SLR21	CCLE Cell Line Gene CNV Profiles	1.0	1.75473
OUMS23	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34211
JHESOAD1	CCLE Cell Line Gene CNV Profiles	1.0	2.22674
CEBPB	ChEA Transcription Factor Targets	1.0	null
NFIB	ChEA Transcription Factor Targets	1.0	null
UMC-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.929576
proliferation	GeneRIF Biological Term Annotations	1.0	null
SCLC-22H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00052
NUGC2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61898
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30804
H3K27ac_bone marrow macrophage_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
EFO27	CCLE Cell Line Gene CNV Profiles	-1.0	-1.97793
suppressing	GeneRIF Biological Term Annotations	1.0	null
mannose	GeneRIF Biological Term Annotations	1.0	null
FOXO3	JASPAR Predicted Transcription Factor Targets	1.0	null
modulates	GeneRIF Biological Term Annotations	1.0	null
vivo	GeneRIF Biological Term Annotations	1.0	null
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12542
SKMEL5	CCLE Cell Line Gene CNV Profiles	1.0	1.98264
SLR23	CCLE Cell Line Gene CNV Profiles	1.0	1.44438
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.18726
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12542
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.991847
LN-18	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.54006
ONS76	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33022
mir511	GeneRIF Biological Term Annotations	1.0	null
DANG	CCLE Cell Line Gene CNV Profiles	1.0	2.22941
NCI-H1915	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.83402
RKO-E6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03767
RKO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03767
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12542
NCI-H716	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.48833
NFIB-24661679-E16.5 LUNG-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.886724
G59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.825325
HCC461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.48833
HCC364	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16157
UM-UC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30804
CAL 27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00007
NB4	CCLE Cell Line Gene CNV Profiles	1.0	1.44938
illustrate	GeneRIF Biological Term Annotations	1.0	null
HS 852.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00052
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.825325
GMS10	CCLE Cell Line Gene CNV Profiles	-1.0	-1.8006
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.12024
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.938359
only	GeneRIF Biological Term Annotations	1.0	null
TK-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.9285
CAPAN1	CCLE Cell Line Gene CNV Profiles	1.0	1.8052
suppress	GeneRIF Biological Term Annotations	1.0	null
bax	GeneRIF Biological Term Annotations	1.0	null