association	dataset	threshold value	standardized value
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.938691
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.830195
A3KAW	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49877
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04446
GSU	CCLE Cell Line Gene CNV Profiles	1.0	1.36441
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08486
SUDHL10	CCLE Cell Line Gene CNV Profiles	1.0	1.97665
LN-229	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854793
MKN45	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39579
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.997005
NCIH441	CCLE Cell Line Gene CNV Profiles	1.0	1.87309
NCIH2172	CCLE Cell Line Gene CNV Profiles	-1.0	-1.88561
CTCF_lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24883
DMS454	CCLE Cell Line Gene CNV Profiles	-1.0	-2.09288
SK-MEL-3	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.7119
SW1271	CCLE Cell Line Gene CNV Profiles	1.0	1.37851
CCK81	CCLE Cell Line Gene CNV Profiles	-1.0	-2.3514
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05139
CTCF_pancreas_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SKMEL3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.65808
NCIH2073	CCLE Cell Line Gene CNV Profiles	1.0	1.68832
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.895597
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.969645
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08416
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.996092
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.00692
CTCF_medulloblastoma_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03612
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.938691
BRCA1	JASPAR Predicted Transcription Factor Targets	1.0	null
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04446
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4191
OVCAR433	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53747
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52716
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.93801
CTCF_spleen_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
PK45H	CCLE Cell Line Gene CNV Profiles	1.0	1.44823
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HMC18	CCLE Cell Line Gene CNV Profiles	1.0	2.67705
HCC38	CCLE Cell Line Gene CNV Profiles	1.0	2.36415
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2496
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31568
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0407
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08382
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51429
CCK-81	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.7119
NCIH1105	CCLE Cell Line Gene CNV Profiles	1.0	1.61593
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21414
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.852982
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.72421
HCC1599	CCLE Cell Line Gene CNV Profiles	1.0	1.77653
FOXA1_OE_GDS4957_10_human_LNCaP prostate cancer cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
AU565	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48688
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.895597
JHOC5	CCLE Cell Line Gene CNV Profiles	1.0	1.80253
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.841554
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.47956
RERFLCAD2	CCLE Cell Line Gene CNV Profiles	1.0	2.07422
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51429
SNU324	CCLE Cell Line Gene CNV Profiles	1.0	1.33022
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08416
NCIH889	CCLE Cell Line Gene CNV Profiles	-1.0	-1.65963
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.883901
NCIH2087	CCLE Cell Line Gene CNV Profiles	1.0	1.36127
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.19559
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23991
SKHEP1	CCLE Cell Line Gene CNV Profiles	1.0	2.20946
COLO 794	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.829021
BHT101	CCLE Cell Line Gene CNV Profiles	1.0	1.45735
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17557
AP-2rep	MotifMap Predicted Transcription Factor Targets	1.0	null
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67997
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.969645
DMS114	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49143
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.967391
CTCF_kidney_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KE97	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
RPMI7951	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36179
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1694
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.967391
BT474	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44329
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0407
BICR18	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40585
HCC1937	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32206
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.898445
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1694
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
NCIH727	CCLE Cell Line Gene CNV Profiles	-1.0	-1.74871
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.92304
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.18204
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12511
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.969645
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13723
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.81793
HS695T	CCLE Cell Line Gene CNV Profiles	1.0	1.73902
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0407
CTCF	ENCODE Transcription Factor Targets	1.0	null
STAT4	MotifMap Predicted Transcription Factor Targets	1.0	null
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.46976
KMS18	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20312
SNUC5	CCLE Cell Line Gene CNV Profiles	1.0	1.46047
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.938691
A1207	CCLE Cell Line Gene CNV Profiles	1.0	1.97726
IGR1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.7291
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12906
LMSU	CCLE Cell Line Gene CNV Profiles	1.0	2.86037
CAL12T	CCLE Cell Line Gene CNV Profiles	1.0	1.53747
SKMES1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39758
HOXA5	JASPAR Predicted Transcription Factor Targets	1.0	null
EJM	CCLE Cell Line Gene CNV Profiles	1.0	1.65198
SKES1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00401
HUPT4	CCLE Cell Line Gene CNV Profiles	1.0	1.56585
SK-MEL-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.66131
NCI-H2369	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36156
1321N1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60543
OCIMY7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57472
SNU1077	CCLE Cell Line Gene CNV Profiles	-1.0	-1.90534
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.92304
NCIH841	CCLE Cell Line Gene CNV Profiles	-1.0	-1.80853
D283MED	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
DMS 454	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.852982
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.841554
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.19559
TF1	CCLE Cell Line Gene CNV Profiles	1.0	1.51
H2369	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.7119
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.897757
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.93801
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12511
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.852982
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29667
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.60321
POLR2A	ENCODE Transcription Factor Targets	1.0	null
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31641
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854793
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.895597
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854793
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.6811
CTCF_GM20000_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_HGPS cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH1355	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36067
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.7696
SKBR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54849
HUT78	CCLE Cell Line Gene CNV Profiles	1.0	1.34942
FOXA1_OE_GDS4957_144_human_LNCaP prostate cancer cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41105
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.830317
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13494
HCC1534	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.62277
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854793
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04446
JHOS2	CCLE Cell Line Gene CNV Profiles	1.0	1.40525
HEC251	CCLE Cell Line Gene CNV Profiles	1.0	1.55428