association	dataset	threshold value	standardized value
NCI-H2023	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.93915
contributes	GeneRIF Biological Term Annotations	1.0	null
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.05671
SNU601	CCLE Cell Line Gene CNV Profiles	1.0	1.77478
MDAMB361	CCLE Cell Line Gene CNV Profiles	1.0	1.50649
growthpromoting	GeneRIF Biological Term Annotations	1.0	null
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.931373
HCC4011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.876283
RERF-GC-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.80252
SET-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62389
HT1376	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71954
SCC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16362
stem	GeneRIF Biological Term Annotations	1.0	null
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21568
OVCAR4	CCLE Cell Line Gene CNV Profiles	1.0	2.04495
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22212
SNU-668	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66868
directly	GeneRIF Biological Term Annotations	1.0	null
IPC-298	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.122
EZH2_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01995
HCC33	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47499
H3K36me3_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
MCF10DCIS.COM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.85672
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28417
RMUGS	CCLE Cell Line Gene CNV Profiles	1.0	1.52482
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32032
NCCSTCK140	CCLE Cell Line Gene CNV Profiles	1.0	1.39433
NCI-H23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.876283
NCI-H226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.874869
NCIH1573	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44154
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09818
Neoplasm Metastasis	CTD Gene-Disease Associations	1.0	2.88009
affect	GeneRIF Biological Term Annotations	1.0	null
OVISE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00642
COLO 794	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929618
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.89387
unable	GeneRIF Biological Term Annotations	1.0	null
AGS	CCLE Cell Line Gene CNV Profiles	1.0	1.42637
LS123	CCLE Cell Line Gene CNV Profiles	1.0	1.39098
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22212
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.943075
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28417
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.867625
POLR2A_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.65031
NCI-H1581	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24041
putative	GeneRIF Biological Term Annotations	1.0	null
JEKO1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.83705
breast	GeneRIF Biological Term Annotations	1.0	null
HCC366	CCLE Cell Line Gene CNV Profiles	1.0	1.33435
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
AGS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16362
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.876283
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07905
H2AFZ_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21173
MAFK	ENCODE Transcription Factor Targets	1.0	null
than	GeneRIF Biological Term Annotations	1.0	null
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875411
COV362	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47082
RL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.42624
NCIH2227	CCLE Cell Line Gene CNV Profiles	1.0	2.19762
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.59304
antisense	GeneRIF Biological Term Annotations	1.0	null
angiogenesis	GeneRIF Biological Term Annotations	1.0	null
EZH2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.96193
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875411
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16231
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
MEC2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.65085
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.867625
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
SK-N-DZ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.00424
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.944016
effects	GeneRIF Biological Term Annotations	1.0	null
KDM5A	ENCODE Transcription Factor Targets	1.0	null
HEC-1-A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01161
HUH6	CCLE Cell Line Gene CNV Profiles	1.0	2.51313
LCLC-97TM1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.904415
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31042
HCC1937	CCLE Cell Line Gene CNV Profiles	1.0	1.65564
cassette	GeneRIF Biological Term Annotations	1.0	null
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07905
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.973703
ABC1	CCLE Cell Line Gene CNV Profiles	1.0	1.37828
hur	GeneRIF Biological Term Annotations	1.0	null
NCIH929	CCLE Cell Line Gene CNV Profiles	-1.0	-2.54759
POLR2A	ENCODE Transcription Factor Targets	1.0	null
LN-18	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.09597
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07905
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01995
TEN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52979
OVCAR-3	COSMIC Cell Line Gene CNV Profiles	1.0	2.93899
abcg2overexpressing	GeneRIF Biological Term Annotations	1.0	null
had	GeneRIF Biological Term Annotations	1.0	null
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01995
CTCF	ENCODE Transcription Factor Targets	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.912841
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.14757
KCI-MOH1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44142
suppresses	GeneRIF Biological Term Annotations	1.0	null
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
YAPC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35665
YAPC	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36598
HT1197	CCLE Cell Line Gene CNV Profiles	1.0	1.64215
regulate	GeneRIF Biological Term Annotations	1.0	null
hsamir520	GeneRIF Biological Term Annotations	1.0	null
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10455
presence	GeneRIF Biological Term Annotations	1.0	null
drugresistant	GeneRIF Biological Term Annotations	1.0	null
hgf	GeneRIF Biological Term Annotations	1.0	null
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16362
RBPJ	ChEA Transcription Factor Targets	1.0	null
A549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21335
ONS76	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4407
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62601
SKM1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73261
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00642
KYSE510	CCLE Cell Line Gene CNV Profiles	1.0	1.7194
RT4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.874869
KARPAS299	CCLE Cell Line Gene CNV Profiles	-1.0	-2.09256
HS 936.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22212
PA-TU-8988T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07905
SKNDZ	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00455
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52123
CHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.7002
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00951
NCI-H1623	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32032
NCIH1781	CCLE Cell Line Gene CNV Profiles	-1.0	-1.814
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32032
NCIH2286	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73357
regulating	GeneRIF Biological Term Annotations	1.0	null
impact	GeneRIF Biological Term Annotations	1.0	null
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22212
H3K27me3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HS 746T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.854825
HCC78	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25266
NCI-H250	COSMIC Cell Line Gene CNV Profiles	1.0	2.93899
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.975799
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09818
site	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsamir519c	GeneRIF Biological Term Annotations	1.0	null
BICR31	CCLE Cell Line Gene CNV Profiles	1.0	2.06594
mirna	GeneRIF Biological Term Annotations	1.0	null
greater	GeneRIF Biological Term Annotations	1.0	null
MDAMB157	CCLE Cell Line Gene CNV Profiles	1.0	1.52619
MEC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52583
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.931973
mir520h	GeneRIF Biological Term Annotations	1.0	null
abcg2	GeneRIF Biological Term Annotations	1.0	null
KYSE-510	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.931973
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875411
NCI-H1944	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06006
LN18	CCLE Cell Line Gene CNV Profiles	-1.0	-2.7977
SNU878	CCLE Cell Line Gene CNV Profiles	1.0	1.4232
MAFK_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GCIY	CCLE Cell Line Gene CNV Profiles	1.0	1.91173
YD10B	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49326
TMD8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.45215
PK59	CCLE Cell Line Gene CNV Profiles	1.0	1.48832
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.995038
NCIH1581	CCLE Cell Line Gene CNV Profiles	-1.0	-1.56966
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.18934
embryonic	GeneRIF Biological Term Annotations	1.0	null
HGC27	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55519
because	GeneRIF Biological Term Annotations	1.0	null
RI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08032
SNU668	CCLE Cell Line Gene CNV Profiles	1.0	1.74975
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01995
HCC1599	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3883
sequestered	GeneRIF Biological Term Annotations	1.0	null
ONCODG1	CCLE Cell Line Gene CNV Profiles	1.0	2.34406
H3K9me3_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
limit	GeneRIF Biological Term Annotations	1.0	null
SNU-484	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.904415
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.866728
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32032
microenvironmental	GeneRIF Biological Term Annotations	1.0	null
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15954
RL	CCLE Cell Line Gene CNV Profiles	-1.0	-2.28372
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.65031
KARPAS-422	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26554
H3K36me3_H7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.96193
mir519	GeneRIF Biological Term Annotations	1.0	null
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.876283
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16362
EBNA2-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
pivotal	GeneRIF Biological Term Annotations	1.0	null
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.85741
atpbinding	GeneRIF Biological Term Annotations	1.0	null
LCLC-103H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.974929
RI1	CCLE Cell Line Gene CNV Profiles	1.0	1.48698
whereas	GeneRIF Biological Term Annotations	1.0	null
KP4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07905
CJM	CCLE Cell Line Gene CNV Profiles	1.0	1.33506
HPAC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21173
microrna	GeneRIF Biological Term Annotations	1.0	null
SU8686	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50284
H3K9me3_NT2-D1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.943075
HCC78	CCLE Cell Line Gene CNV Profiles	1.0	1.42161
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21335
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.7002
PANC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4394
NCIH2170	CCLE Cell Line Gene CNV Profiles	1.0	1.43563
lacks	GeneRIF Biological Term Annotations	1.0	null
GCIY	COSMIC Cell Line Gene CNV Profiles	1.0	2.93899
H3K36me3_cardiac mesoderm_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_GM12875_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulator	GeneRIF Biological Term Annotations	1.0	null
required	GeneRIF Biological Term Annotations	1.0	null
COLO-704	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.85672
PCM6	CCLE Cell Line Gene CNV Profiles	-1.0	-2.24697
RBPJ-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
NCIH1975	CCLE Cell Line Gene CNV Profiles	1.0	1.88375
YD15	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4046
EZH2	ENCODE Transcription Factor Targets	1.0	null
biogenesis	GeneRIF Biological Term Annotations	1.0	null
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21568
hsamir520h	GeneRIF Biological Term Annotations	1.0	null
transporter	GeneRIF Biological Term Annotations	1.0	null
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.96193
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15954
H3K27me3_Fetal Lung	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null