association	dataset	threshold value	standardized value
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09021
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.865381
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.944109
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53882
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
CAL-85-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08086
NCIH2228	CCLE Cell Line Gene CNV Profiles	1.0	1.40951
SAP30	ENCODE Transcription Factor Targets	1.0	null
OV56	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.825587
Oct-1	MotifMap Predicted Transcription Factor Targets	1.0	null
HDAC2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RPMI7951	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41753
NCIH2085	CCLE Cell Line Gene CNV Profiles	1.0	1.40312
SKBR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6092
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15344
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62199
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.865381
SUM 52PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.73323
ERG	ChEA Transcription Factor Targets	1.0	null
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12628
MKN45	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44899
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.970355
KDM5B	ENCODE Transcription Factor Targets	1.0	null
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20319
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
CAPAN2	CCLE Cell Line Gene CNV Profiles	-1.0	-2.09288
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.853147
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.31329
HUH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.80623
IGR1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.80987
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.999476
HUPT4	CCLE Cell Line Gene CNV Profiles	1.0	1.74385
VMRCLCD	CCLE Cell Line Gene CNV Profiles	1.0	1.33831
CAL12T	CCLE Cell Line Gene CNV Profiles	1.0	1.70232
HEC251	CCLE Cell Line Gene CNV Profiles	1.0	1.72677
C32	COSMIC Cell Line Gene CNV Profiles	1.0	2.09073
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.853147
KE97	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.85451
NCIH1105	CCLE Cell Line Gene CNV Profiles	1.0	1.81834
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.997201
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18426
CEBPB_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.970355
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04801
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.80623
POU2F3	MotifMap Predicted Transcription Factor Targets	1.0	null
KMS18	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20312
ERG-20517297-VCAP-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
KDM5B_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SU-DHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35381
PPARD-21283829-MYOFIBROBLAST-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
MDA-MB-330	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.40381
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.865381
HCC1187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1462
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.79256
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.09444
CTCF	ENCODE Transcription Factor Targets	1.0	null
HCC38	CCLE Cell Line Gene CNV Profiles	1.0	3.27792
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34097
HOP-92	COSMIC Cell Line Gene CNV Profiles	1.0	2.09073
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.85652
EJM	CCLE Cell Line Gene CNV Profiles	1.0	1.92045
HS695T	CCLE Cell Line Gene CNV Profiles	1.0	2.02228
PPARD	ChEA Transcription Factor Targets	1.0	null
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.930966
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.932959
HCC1500	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.7896
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.932959
NCIH1184	CCLE Cell Line Gene CNV Profiles	1.0	1.36762
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09425
Fetal Heart	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-1.3088
ES-I3 Cells	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-1.38249
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0393
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45045
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1462
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.932206
HCC1599	CCLE Cell Line Gene CNV Profiles	1.0	2.07696
DMS114	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54463
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.904865
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.980211
Primary hematopoietic stem cells G-CSF-mobilized Female RO_01480	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	1.0	1.0586
OCIMY7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64011
DMS454	CCLE Cell Line Gene CNV Profiles	1.0	2.20946
CCK81	CCLE Cell Line Gene CNV Profiles	-1.0	-2.3514
H3255	COSMIC Cell Line Gene CNV Profiles	1.0	2.09073
SKES1	CCLE Cell Line Gene CNV Profiles	1.0	1.54674
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
BICR18	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45787
BT474	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49235
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04801
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.838707
PK45H	CCLE Cell Line Gene CNV Profiles	1.0	2.60009
HCC1395	COSMIC Cell Line Gene CNV Profiles	1.0	2.09073
SKMEL3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71686
CTCF_spleen_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.885484
ES-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.47087
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.18685
A3KAW	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55274
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14436
BHT101	CCLE Cell Line Gene CNV Profiles	1.0	1.59714
GSU	CCLE Cell Line Gene CNV Profiles	1.0	1.47382
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.01538
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13534
NUGC4	CCLE Cell Line Gene CNV Profiles	1.0	1.34182
NCIH1355	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41642
CEBPB	ENCODE Transcription Factor Targets	1.0	null
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04801
SNUC5	CCLE Cell Line Gene CNV Profiles	1.0	1.60066
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44948
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45928
Oct-2	MotifMap Predicted Transcription Factor Targets	1.0	null
AU565	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5396
Primary hematopoietic stem cells G-CSF-mobilized Female RO_01536	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	1.0	0.920868
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.905498
NCIH1373	CCLE Cell Line Gene CNV Profiles	1.0	1.33321
SAP30_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
A101D	COSMIC Cell Line Gene CNV Profiles	1.0	2.09073
SUDHL10	CCLE Cell Line Gene CNV Profiles	1.0	2.36415
A2058	COSMIC Cell Line Gene CNV Profiles	1.0	2.09073
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.932959
FADU	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34598
Skeletal Muscle Male	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-0.838008
NCIH841	CCLE Cell Line Gene CNV Profiles	-1.0	-1.86435
FU97	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32511
HDAC2	ENCODE Transcription Factor Targets	1.0	null
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34177
TOLEDO	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76099
HCC1937	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37494
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.825587
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.932206
SW837	CCLE Cell Line Gene CNV Profiles	1.0	1.88584
59M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12487
NCIH2172	CCLE Cell Line Gene CNV Profiles	-1.0	-1.92896
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27005
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.885484
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13534
SW1271	CCLE Cell Line Gene CNV Profiles	1.0	1.49007
Primary T cells from cord blood	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	1.0	0.867507
NCIH2087	CCLE Cell Line Gene CNV Profiles	1.0	1.47029
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04588
NCIH1651	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36729
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32061
NCI-H441	COSMIC Cell Line Gene CNV Profiles	1.0	2.09073
OKAJIMA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.837953
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18426
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.972543
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.5695
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.885484
TF1	CCLE Cell Line Gene CNV Profiles	1.0	1.66352
JHOS2	CCLE Cell Line Gene CNV Profiles	1.0	1.52538
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09503
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.85451
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23302
1321N1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67559
PL18	COSMIC Cell Line Gene CNV Profiles	1.0	2.09073
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.885484
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.885484
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.972543
SNU324	CCLE Cell Line Gene CNV Profiles	1.0	1.4324
DMS79	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00401
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.932206
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05529