association	dataset	threshold value	standardized value
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46804
EZH2_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.85001
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04922
muc1	GeneRIF Biological Term Annotations	1.0	null
OCIM1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64196
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.24926
OLIG2	ChEA Transcription Factor Targets	1.0	null
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04922
MM.1S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01428
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.914288
OVCAR433	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46732
JHH6	CCLE Cell Line Gene CNV Profiles	-1.0	-1.62625
COR-L47	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08127
NCIH2170	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45121
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.29331
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31393
NCIH226	CCLE Cell Line Gene CNV Profiles	-1.0	-2.03914
IPC-298	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75381
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18777
CA SKI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.979505
H3K27me3_bronchial epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CAL-85-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.0622
NCI-H1734	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
LC1F	CCLE Cell Line Gene CNV Profiles	1.0	2.16825
overexpression	GeneRIF Biological Term Annotations	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.943858
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
BICR18	CCLE Cell Line Gene CNV Profiles	1.0	1.57419
TE-6	COSMIC Cell Line Gene CNV Profiles	1.0	2.0622
HDQP1	CCLE Cell Line Gene CNV Profiles	1.0	1.4193
U266B1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.874349
E2F4_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DMS 53	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1021
consisting	GeneRIF Biological Term Annotations	1.0	null
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
HPAF-II	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10225
NCIH1755	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39954
establish	GeneRIF Biological Term Annotations	1.0	null
H3K27me3_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GLC82	CCLE Cell Line Gene CNV Profiles	1.0	1.5132
HS 766T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.89734
HCC1395	CCLE Cell Line Gene CNV Profiles	-1.0	-2.2954
NCI-H345	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04847
mir551bcatalaseros	GeneRIF Biological Term Annotations	1.0	null
SNU503	CCLE Cell Line Gene CNV Profiles	1.0	1.6516
U-937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.953912
ABC1	CCLE Cell Line Gene CNV Profiles	1.0	1.45896
NCI-H1882	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.89734
KYSE-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.87197
EZH2_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TM31	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46053
NCI-H2810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52187
A549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20063
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20063
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896414
LC-1-SQ	COSMIC Cell Line Gene CNV Profiles	1.0	2.0622
POLR2A_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PLC/PRF/5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.10312
NCI-H1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.895057
NCI-H520	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03631
MOR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.89734
NCI-H2122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896414
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896414
SCLC-22H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12282
SNU626	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5162
H3K4me1_Fetal Brain	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67532
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.843544
OVCAR-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.889655
SNU-398	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1021
POLR2A	ENCODE Transcription Factor Targets	1.0	null
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.91171
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41298
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.24926
NCI-H2172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37961
NCIH2172	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64586
PLCPRF5	CCLE Cell Line Gene CNV Profiles	-1.0	-2.35196
SNU119	CCLE Cell Line Gene CNV Profiles	1.0	1.95653
NCIH1435	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73557
ABC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37642
OVCA433	COSMIC Cell Line Gene CNV Profiles	1.0	2.0622
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.842441
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
NCIH2342	CCLE Cell Line Gene CNV Profiles	1.0	1.36336
PCI-30	COSMIC Cell Line Gene CNV Profiles	1.0	2.0622
20028859-TableS2	GeneSigDB Published Gene Signatures	1.0	null
A549	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35025
acquired	GeneRIF Biological Term Annotations	1.0	null
SKHEP1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36369
A-431	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.836523
OCI-AML2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.879257
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.966797
ABC-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.0622
NCI-H810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10225
BICR22	COSMIC Cell Line Gene CNV Profiles	1.0	2.0622
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46732
E2F4	ENCODE Transcription Factor Targets	1.0	null
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.70223
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.906848
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39179
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.58416
KNS-62	COSMIC Cell Line Gene CNV Profiles	1.0	2.0622
OVCAR-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.64461
DB	CCLE Cell Line Gene CNV Profiles	-1.0	-1.75828
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47957
CAPAN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.895057
MFE-280	COSMIC Cell Line Gene CNV Profiles	1.0	2.0622
MEWO	CCLE Cell Line Gene CNV Profiles	1.0	1.39517
LC1SQSF	CCLE Cell Line Gene CNV Profiles	1.0	3.27804
A388	COSMIC Cell Line Gene CNV Profiles	1.0	2.0622
HCC461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1021
against	GeneRIF Biological Term Annotations	1.0	null
G130	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15327
ALEXANDERCELLS	CCLE Cell Line Gene CNV Profiles	-1.0	-2.40862
NCIH1734	CCLE Cell Line Gene CNV Profiles	1.0	2.10784
KYSE180	CCLE Cell Line Gene CNV Profiles	1.0	1.6764
LN-18	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896414
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15327
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40551
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31824
OAW-28	COSMIC Cell Line Gene CNV Profiles	1.0	2.0622
EFO21	CCLE Cell Line Gene CNV Profiles	1.0	1.36658
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16216
H3K9me3_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
GATA3_SH-SY5Y_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4793
SKBR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32535
HCC1576	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896414
BFTC-905	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.966797
SNU1214	CCLE Cell Line Gene CNV Profiles	1.0	1.52606
OVCAR-8	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.44693
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
NB1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.89901
PE/CA-PJ15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.906848
SF268	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896414
NCI-H810	COSMIC Cell Line Gene CNV Profiles	1.0	2.0622
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67532
HCC95	CCLE Cell Line Gene CNV Profiles	1.0	1.79304
NCI-H460	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.89734
NCI-H1304	COSMIC Cell Line Gene CNV Profiles	1.0	2.0622
A-427	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24629
IPC298	CCLE Cell Line Gene CNV Profiles	-1.0	-1.87593
BFTC-905	COSMIC Cell Line Gene CNV Profiles	1.0	2.0622
H3K9me3_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H1734	COSMIC Cell Line Gene CNV Profiles	1.0	2.0622
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.55875
A-375	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15327
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.842441
NCI-H2052	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20063
NCIH3255	CCLE Cell Line Gene CNV Profiles	1.0	1.47743
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04922
KYSE270	CCLE Cell Line Gene CNV Profiles	1.0	1.96686
CTCF_spleen_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OVCAR8	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
PANC 04.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.953912
overcome	GeneRIF Biological Term Annotations	1.0	null
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69677
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.906848
BGC823	CCLE Cell Line Gene CNV Profiles	1.0	1.59534
59M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.841157
G122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39179
EZH2	ENCODE Transcription Factor Targets	1.0	null
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
OVKATE	CCLE Cell Line Gene CNV Profiles	1.0	1.64505
HCC2270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10126
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.23758
NCIH23	CCLE Cell Line Gene CNV Profiles	-1.0	-2.05141
exploited	GeneRIF Biological Term Annotations	1.0	null
CHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46804
EKVX	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33768
GATA3	ENCODE Transcription Factor Targets	1.0	null
intervention	GeneRIF Biological Term Annotations	1.0	null
BICR22	CCLE Cell Line Gene CNV Profiles	1.0	2.44549
KYSE-180	COSMIC Cell Line Gene CNV Profiles	1.0	2.0622
OLIG2-23332759-OLIGODENDROCYTES-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
OV56	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.842984
KNS-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2244
NCI-H2110	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.965666
H3K9me3_CH12.LX_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
OAW28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23434
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
TT	CCLE Cell Line Gene CNV Profiles	1.0	1.36508
U2OS	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44978
H3255	COSMIC Cell Line Gene CNV Profiles	1.0	2.0622
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.55875
HCC60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.16825
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.16629
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.843544
SNU-668	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00874
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46732
NCI-H1770	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.89734
TE6	CCLE Cell Line Gene CNV Profiles	1.0	1.6529
RDES	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53033
CAL-39	COSMIC Cell Line Gene CNV Profiles	1.0	2.0622
CAPAN-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.0622
MDAMB436	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61337
chemoresistance	GeneRIF Biological Term Annotations	1.0	null
VMRCLCP	CCLE Cell Line Gene CNV Profiles	1.0	1.8671
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24629
NCI-H727	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06278
HCC15	CCLE Cell Line Gene CNV Profiles	-1.0	-1.66175
TALL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36044
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51587
NCI-H2196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.836523
HUG1N	CCLE Cell Line Gene CNV Profiles	1.0	2.45905
20028859-TableS4	GeneSigDB Published Gene Signatures	1.0	null