association	dataset	threshold value	standardized value
H3K36me3_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
647V	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73422
CEBPB_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KYSE-50	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.86624
OUMS27	CCLE Cell Line Gene CNV Profiles	1.0	1.47336
ALEXANDERCELLS	CCLE Cell Line Gene CNV Profiles	1.0	1.35524
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05113
CEBPB_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.946877
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.908037
POLR2A_A549_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.922986
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971484
NCIH2030	CCLE Cell Line Gene CNV Profiles	-1.0	-2.0823
JUN	ENCODE Transcription Factor Targets	1.0	null
YMB1	CCLE Cell Line Gene CNV Profiles	1.0	1.50673
H3K9me3_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
JHOS4	CCLE Cell Line Gene CNV Profiles	1.0	2.59998
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16566
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.56021
CAL-33	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.86624
HEC6	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4854
CEBPB	ENCODE Transcription Factor Targets	1.0	null
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05113
COV644	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00238
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.975755
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.881672
NCCSTCK140	CCLE Cell Line Gene CNV Profiles	1.0	1.47649
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09169
DOK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16638
SET-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.98465
HCC1187	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38746
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.973531
COV318	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33954
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30587
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.830415
MFM-223	COSMIC Cell Line Gene CNV Profiles	1.0	2.14796
RERFLCSQ1	CCLE Cell Line Gene CNV Profiles	1.0	1.59303
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17647
HCC1599	CCLE Cell Line Gene CNV Profiles	-1.0	-1.80958
STAT4	MotifMap Predicted Transcription Factor Targets	1.0	null
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27021
POLR2A_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU308	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39959
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.894836
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.868576
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.93045
A375	CCLE Cell Line Gene CNV Profiles	-1.0	-2.35144
HUP-T4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09312
CEBPB_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.81212
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01173
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.6759
NCIH2052	CCLE Cell Line Gene CNV Profiles	1.0	2.03021
HS578T	CCLE Cell Line Gene CNV Profiles	1.0	1.67328
MYC_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MYC	ENCODE Transcription Factor Targets	1.0	null
HCC95	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32652
COR-L311	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.86624
NCIH3255	CCLE Cell Line Gene CNV Profiles	1.0	1.35067
TK-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63095
LS411N	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61123
CAL33	CCLE Cell Line Gene CNV Profiles	-1.0	-2.01241
FOS	ENCODE Transcription Factor Targets	1.0	null
SNU-182	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971484
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971484
143B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.70481
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28915
NCI-H3122	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.86624
ES-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39682
NCIH196	CCLE Cell Line Gene CNV Profiles	1.0	2.0173
T47D	CCLE Cell Line Gene CNV Profiles	1.0	1.41796
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.933583
SKES1	CCLE Cell Line Gene CNV Profiles	1.0	1.87309
A-375	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.29283
NCIH1792	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856718
RERF-GC-1B	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.86624
H3K27me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.47686
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00302
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.29283
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.868576
RERFGC1B	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20312
COV318	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42247
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30497
NCI-H2810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.92978
MDAMB436	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
ZR751	CCLE Cell Line Gene CNV Profiles	1.0	1.60632
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856718
SCC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.60353
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971484
CEBPB_A549_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SW1573	CCLE Cell Line Gene CNV Profiles	1.0	1.75803
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.74001
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14305
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.973531
EB2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28664
HCC44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4662
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1333
20485376-TableS4	GeneSigDB Published Gene Signatures	1.0	null
SQ1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54754
A375	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.86624
HCC2279	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52066
SNU738	CCLE Cell Line Gene CNV Profiles	1.0	2.36415
HEY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3922
H3K9me3_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
RUNX2	ChEA Transcription Factor Targets	1.0	null
STAT3	ENCODE Transcription Factor Targets	1.0	null
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.76451
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.836881
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05113
FOS_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH747	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44456
EBC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34237
NCI-H727	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.962891
IGR1	CCLE Cell Line Gene CNV Profiles	1.0	1.54009
PANC0213	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47603
HCC89	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13447
SK23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1329
NCIH2126	CCLE Cell Line Gene CNV Profiles	1.0	1.37982
JUND	ENCODE Transcription Factor Targets	1.0	null
CTCF_medulloblastoma_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OAW42	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.868576
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.882324
A172	CCLE Cell Line Gene CNV Profiles	1.0	1.73504
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.06008
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971484
FU97	CCLE Cell Line Gene CNV Profiles	1.0	1.37016
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.60353
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.975755
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.907408
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JUND_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20489
H3K9me3_fibroblast of lung_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
OSC-19	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.86624
42-MG-BA	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.86624
CEBPB_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC38	CCLE Cell Line Gene CNV Profiles	-1.0	-1.92745
NCI-H2030	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.86624
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1333
MDAMB361	CCLE Cell Line Gene CNV Profiles	1.0	1.67228
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1333
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.840974
RERF-GC-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.29283
MDA-MB-436	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.86624
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.840974
SUM 52PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56711
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.93059
SNU182	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57289
ECGI10	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63879
BT474	CCLE Cell Line Gene CNV Profiles	1.0	1.81963
JURLMK1	CCLE Cell Line Gene CNV Profiles	1.0	2.18646
TP53BP1_KD_GSE54268_670_human_MCF-10A	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
H3K36me3_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SISO	COSMIC Cell Line Gene CNV Profiles	1.0	2.14796
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
HCC2157	CCLE Cell Line Gene CNV Profiles	1.0	1.42873
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24072
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.06008
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
CAL851	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67488
HDQ-P1	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.86624
EZH2_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.840974
KMH2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35957
OV56	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.830415
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.43855
RUNX2-22187159-PCA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
STAT3_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5402
CTCF_GM10266_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.881672
HCC1599	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.86624
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.05746
RCM1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.86587
JUN_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.881672
CEBPB_IMR-90_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05821
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.868576
KHM1B	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59436
NCIH1618	CCLE Cell Line Gene CNV Profiles	1.0	1.519
HCC1143	CCLE Cell Line Gene CNV Profiles	-1.0	-1.7424
DND41	CCLE Cell Line Gene CNV Profiles	1.0	1.98728
EZH2	ENCODE Transcription Factor Targets	1.0	null
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.29283
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.38279
KHM-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.29283
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null