association	dataset	threshold value	standardized value
autosomal dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.049524
tgbr1	GeneRIF Biological Term Annotations	1.0	null
local	GeneRIF Biological Term Annotations	1.0	null
pancreatic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.213291
mitochondrial chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.159074
gastric cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.082386
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.283545
POLR2A_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
virus	GeneRIF Biological Term Annotations	1.0	null
HDAC6_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FADU	CCLE Cell Line Gene CNV Profiles	1.0	3.23974
POLR2AphosphoS5_SK-N-MC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
innate	GeneRIF Biological Term Annotations	1.0	null
CTCF_thymus_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
induces	GeneRIF Biological Term Annotations	1.0	null
esophageal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.094643
kras	GeneRIF Biological Term Annotations	1.0	null
NCIH3255	CCLE Cell Line Gene CNV Profiles	1.0	2.33557
ZBTB33_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
represent	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.863031
acute myeloid leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.341639
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.390841
pancreatic adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.401007
CTCF_astrocyte of the cerebellum_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
thorax	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.381755
SIN3A_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
let7g	GeneRIF Biological Term Annotations	1.0	null
TFAP2A	JASPAR Predicted Transcription Factor Targets	1.0	null
colonic cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062625
Cell Transformation, Neoplastic	CTD Gene-Disease Associations	1.0	1.18259
keratoconjunctivitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.112881
lymphoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064569
NR3C1_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZNF263	ENCODE Transcription Factor Targets	1.0	null
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.965324
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.290308
IGR1	CCLE Cell Line Gene CNV Profiles	1.0	1.58425
ZNF384	ENCODE Transcription Factor Targets	1.0	null
H3K4me1_placenta_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
MAZ_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU410	CCLE Cell Line Gene CNV Profiles	1.0	1.72558
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.14058
adenoid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.289582
pleuropulmonary blastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.735433
downregulated	GeneRIF Biological Term Annotations	1.0	null
colonic adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080084
REC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44703
ZNF143	ENCODE Transcription Factor Targets	1.0	null
CTCF_fibroblast of gingiva_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_LNCaP clone FGC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
variant	GeneRIF Biological Term Annotations	1.0	null
ZBTB7A_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
modulate	GeneRIF Biological Term Annotations	1.0	null
CTCF_foreskin fibroblast_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
breast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.440658
H3K4me1_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
inflammation	GeneRIF Biological Term Annotations	1.0	null
bsg	GeneRIF Biological Term Annotations	1.0	null
oci-aml3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.11863
eye and adnexa disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.251015
u-266 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.432608
Metastatic brain tumor(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
CTCF_fibroblast of villous mesenchyme_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SW 837	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05204
JHH2	CCLE Cell Line Gene CNV Profiles	1.0	1.97218
esophageal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.317679
acute pyelonephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.392629
formation	GeneRIF Biological Term Annotations	1.0	null
tlr4	GeneRIF Biological Term Annotations	1.0	null
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.591641
ionizing	GeneRIF Biological Term Annotations	1.0	null
tuning	GeneRIF Biological Term Annotations	1.0	null
COLO849	CCLE Cell Line Gene CNV Profiles	1.0	1.50096
H3K36me3_BJ_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10809
POLR2A_A549_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO 853	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0974
NR3C1_A549_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ALLSIL	CCLE Cell Line Gene CNV Profiles	-1.0	-1.7271
using	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_brain_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_H1-hESC_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of pulmonary artery_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1869	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14183
thromboembolic	GeneRIF Biological Term Annotations	1.0	null
multiple myeloma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.179387
Hyperplasia	CTD Gene-Disease Associations	1.0	1.33257
hcv	GeneRIF Biological Term Annotations	1.0	null
CTCF_BJ_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mechanisms	GeneRIF Biological Term Annotations	1.0	null
PPARD	ChEA Transcription Factor Targets	1.0	null
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1768
acute myeloid leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.12035
20054351-Table2	GeneSigDB Published Gene Signatures	1.0	null
TCF12	ENCODE Transcription Factor Targets	1.0	null
act	GeneRIF Biological Term Annotations	1.0	null
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.90919
effector	GeneRIF Biological Term Annotations	1.0	null
increase	GeneRIF Biological Term Annotations	1.0	null
ami	GeneRIF Biological Term Annotations	1.0	null
mir126	GeneRIF Biological Term Annotations	1.0	null
ovarian	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of pulmonary artery_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of gingiva_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.827145
compared	GeneRIF Biological Term Annotations	1.0	null
dry eye syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.135865
hematopoietic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062426
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.355944
decreased	GeneRIF Biological Term Annotations	1.0	null
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.29996
Cholestasis	CTD Gene-Disease Associations	1.0	2.88009
POLR2A_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
fetal membrane	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.091374
immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.470711
CTCF_A549_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
liver	GTEx Tissue Gene Expression Profiles	-1.0	-2.10021
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.25365
NCIH1869	CCLE Cell Line Gene CNV Profiles	1.0	1.48908
H3K4me1_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
cell culture	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079583
pancreatic cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.217974
skin cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.072913
A4FUK	CCLE Cell Line Gene CNV Profiles	-1.0	-1.79356
CTCF_MEL cell line_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NR3C1_A549_hg19_8	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ps6	GeneRIF Biological Term Annotations	1.0	null
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.919365
MTA3	ENCODE Transcription Factor Targets	1.0	null
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.258417
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TCF7L2	ENCODE Transcription Factor Targets	1.0	null
CTCF_cardiac muscle cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
rectal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066527
H3K36me3_keratinocyte_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cancerassociated	GeneRIF Biological Term Annotations	1.0	null
RAD21-21589869-MESC-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
ovarian carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.385565
HCC1195	CCLE Cell Line Gene CNV Profiles	-1.0	-1.82401
indicator	GeneRIF Biological Term Annotations	1.0	null
kidney cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079962
mitochondrial part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.056614
POLR2A_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
exerts	GeneRIF Biological Term Annotations	1.0	null
Liver Neoplasms, Experimental	CTD Gene-Disease Associations	1.0	2.88009
retinal detachment	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.164359
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17563
acute	GeneRIF Biological Term Annotations	1.0	null
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.221521
H4K20me1_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
POLR2AphosphoS5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
decrease	GeneRIF Biological Term Annotations	1.0	null
pharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071325
POLR2A_A549_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mirnas	GeneRIF Biological Term Annotations	1.0	null
CTCF_MCF-7_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intestinal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059707
upregulates	GeneRIF Biological Term Annotations	1.0	null
chamber of the eye	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.174883
H3255	COSMIC Cell Line Gene CNV Profiles	1.0	2.14116
H3K9ac_Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CTCF_epithelial cell of proximal tubule_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
micrornas	GeneRIF Biological Term Annotations	1.0	null
PBX3_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HDAC6	ENCODE Transcription Factor Targets	1.0	null
ZMIZ1_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
genotypes	GeneRIF Biological Term Annotations	1.0	null
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.228819
eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.254888
colorectal adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073701
cancer stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.737618
MAZ	ENCODE Transcription Factor Targets	1.0	null
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.12172
H3K27me3_G1E_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
region	GeneRIF Biological Term Annotations	1.0	null
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
SW900	CCLE Cell Line Gene CNV Profiles	1.0	1.33819
H3K27ac_cerebellum_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_K562_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS2_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
atherosclerosis	GeneRIF Biological Term Annotations	1.0	null
periodontium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.115338
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28408
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.357847
NCI-H2722	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.964598
biological	GeneRIF Biological Term Annotations	1.0	null
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.97803
ovarian cancer	GAD Gene-Disease Associations	1.0	null
H3K36me3_BJ_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.62728
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066642
breast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.224645
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.54812
CTCF_A549_hg19_9	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27998
adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.134509
lower	GeneRIF Biological Term Annotations	1.0	null
EZH2_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.364139
POLR2A_cerebellum_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.873655
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04781
gastric cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.309335
pyelitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.161523
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.873655
KDM5B_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
salivary gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.116072
lymph node	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.307167
marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064658
G22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.928207
H3K27ac_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
ovarian cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.451078
transcriptional	GeneRIF Biological Term Annotations	1.0	null
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.34814
CTCF_choroid plexus epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
tolllike	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_Panc1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
earliest	GeneRIF Biological Term Annotations	1.0	null
gastric epithelium cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.542566
EZH2_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
childhood kidney neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.130866
mixed cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.508424
MTA3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
following	GeneRIF Biological Term Annotations	1.0	null
chronic	GeneRIF Biological Term Annotations	1.0	null
CTCF_cardiac fibroblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
CTCF_lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_HGPS cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pakt	GeneRIF Biological Term Annotations	1.0	null
USF2_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_bronchial epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.491791
retinal pigment epithelium cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.423436
POLR2A_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
neural stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.429547
muscle	GeneRIF Biological Term Annotations	1.0	null
effect	GeneRIF Biological Term Annotations	1.0	null
SIRT6_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44711
H3K27me3_G1E-ER4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
embryonic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.110621
rectal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066115
WHSC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060368
H3K4me3_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.272997
KDM5B	ENCODE Transcription Factor Targets	1.0	null
ischemic	GeneRIF Biological Term Annotations	1.0	null
agents	GeneRIF Biological Term Annotations	1.0	null
KMS28BM	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49029
let7	GeneRIF Biological Term Annotations	1.0	null
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13264
CTCF_endothelial cell of umbilical vein_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
501A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.31348
H3K9me3_megakaryocyte_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_GM12873_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-CO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00506
pulmonary blastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.581217
POLR2A_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_H1 BMP4 Derived Trophoblast Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CTCF_fibroblast of pedal digit skin_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.11818
T3M10	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32599
RVH421	CCLE Cell Line Gene CNV Profiles	1.0	1.77497
colonic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061695
positive	GeneRIF Biological Term Annotations	1.0	null
gastric epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.189008
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.520041
kidney cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.061607
U266B1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41079
esophageal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.300679
hypertension	GeneRIF Biological Term Annotations	1.0	null
various	GeneRIF Biological Term Annotations	1.0	null
leukemia	GeneRIF Biological Term Annotations	1.0	null
sense organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.072204
CTCF_skin fibroblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ifnbeta	GeneRIF Biological Term Annotations	1.0	null
among	GeneRIF Biological Term Annotations	1.0	null
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.0416
CTCF_fibroblast of upper leg skin_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
interferon	GeneRIF Biological Term Annotations	1.0	null
genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.04272
pathogenesis	GeneRIF Biological Term Annotations	1.0	null
SMC3	ENCODE Transcription Factor Targets	1.0	null
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.387051
C32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.87676
SIN3A_Panc1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9ac_NT2-D1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063822
hypermethylation	GeneRIF Biological Term Annotations	1.0	null
ns5b	GeneRIF Biological Term Annotations	1.0	null
POLR2A_HeLa-S3_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
keratoconjunctivitis sicca	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.174354
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.37149
esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.104666
USF2	ENCODE Transcription Factor Targets	1.0	null
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.61342
globe disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.254536
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32806
mll	GeneRIF Biological Term Annotations	1.0	null
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.225267
lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06528
TCF7L2_Panc1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PPARD-21283829-MYOFIBROBLAST-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
kidney cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.13428
NFIC_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
burkitt lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.109968
nonhistone	GeneRIF Biological Term Annotations	1.0	null
endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.166319
cataract	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.195183
CHD2_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PHF8	ENCODE Transcription Factor Targets	1.0	null
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.919365
a-375 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.391553
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.612555
H3K27ac_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
KNS81	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3752
CTCF_MCF-7_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.25365
activates	GeneRIF Biological Term Annotations	1.0	null
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1768
aspc-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.686368
POLR2A_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Prenatal Exposure Delayed Effects	CTD Gene-Disease Associations	1.0	1.14678
acute leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.177576
ZNF384_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pulmonary artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.214017
gastric cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.51335
TET1	ChEA Transcription Factor Targets	1.0	null
CTCF_HepG2_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
REST	ChEA Transcription Factor Targets	1.0	null
WHSC1	ENCODE Transcription Factor Targets	1.0	null
blood cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062106
survival	GeneRIF Biological Term Annotations	1.0	null
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.965324
involving	GeneRIF Biological Term Annotations	1.0	null
CHD2_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
19895320-Table2	GeneSigDB Published Gene Signatures	1.0	null
melanoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075117
independent	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of villous mesenchyme_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
oral cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.217554
POLR2A_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JHOM2B	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33546
germ layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.385896
malignant ovarian surface epithelial-stromal neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.384079
COLO678	CCLE Cell Line Gene CNV Profiles	-1.0	-1.79922
SK-N-AS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41206
ZMIZ1	ENCODE Transcription Factor Targets	1.0	null
SIN3A	ENCODE Transcription Factor Targets	1.0	null
tissue	GeneRIF Biological Term Annotations	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
ZNF143_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
circulating	GeneRIF Biological Term Annotations	1.0	null
HPAC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.61171
arterial endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.230382
plasma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.171855
MELHO	CCLE Cell Line Gene CNV Profiles	1.0	1.70864
NR3C1_A549_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SMC3_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ribonucleoprotein granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.102783
H3K4me1_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066057
MYOG_myocyte_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
carney complex	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.322637
epidermal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067086
CTCF_fibroblast of skin of abdomen_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
cytoplasmic stress granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.288091
group	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52586
KNS60	CCLE Cell Line Gene CNV Profiles	-1.0	-2.0659
overexpressing	GeneRIF Biological Term Annotations	1.0	null
miR-targeted genes in squamous cell - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
lymphoblastic	GeneRIF Biological Term Annotations	1.0	null
sequences	GeneRIF Biological Term Annotations	1.0	null
luminal	GeneRIF Biological Term Annotations	1.0	null
Necrosis	CTD Gene-Disease Associations	1.0	1.03197
submerged culture	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.576816
H3K4ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064227
TGW	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.2703
POLR2AphosphoS5_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27ac_spleen_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
mesoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.445653
NCI-H1915	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36541
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.468436
H3K27me3_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
POLR2AphosphoS2_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
significant	GeneRIF Biological Term Annotations	1.0	null
T3M4	CCLE Cell Line Gene CNV Profiles	1.0	1.61882
H3K27ac_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
HCC2935	CCLE Cell Line Gene CNV Profiles	1.0	1.37679
RAD21	ChEA Transcription Factor Targets	1.0	null
brain cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.0579
HDAC2	ENCODE Transcription Factor Targets	1.0	null
sites	GeneRIF Biological Term Annotations	1.0	null
SCLC-22H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25481
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06405
kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062392
nucleoid	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.113404
acute myeloid leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.133473
magea	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_Mobilized CD34 Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CTCF_HEK293_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NR3C1_A549_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.51056
blast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062159
responses	GeneRIF Biological Term Annotations	1.0	null
including	GeneRIF Biological Term Annotations	1.0	null
burkitt lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.106864
H3K36me3_thymus_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
akt2	GeneRIF Biological Term Annotations	1.0	null
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.863031
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.964598
stomach	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.104864
breast	GeneRIF Biological Term Annotations	1.0	null
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.741327
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.30032
spleen	GTEx Tissue Gene Expression Profiles	1.0	1.23796
inhibited	GeneRIF Biological Term Annotations	1.0	null
oral squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.263327
AP-2rep	MotifMap Predicted Transcription Factor Targets	1.0	null
stroke	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS2_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PK59	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40543
RUNX1	ChEA Transcription Factor Targets	1.0	null
highgrade	GeneRIF Biological Term Annotations	1.0	null
SKMEL28	CCLE Cell Line Gene CNV Profiles	1.0	1.65292
ZNF143_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAX_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27ac_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
squamous	GeneRIF Biological Term Annotations	1.0	null
MicroRNAs in cardiomyocyte hypertrophy(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
U-937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.95761
gingival epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.306083
RCOR1	ENCODE Transcription Factor Targets	1.0	null
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081781
CTCF_MCF-7_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS2_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.12128
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.398735
hematopoietic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063332
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.827145
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.243294
COLO 792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26347
heart	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060086
20028859-TableS2	GeneSigDB Published Gene Signatures	1.0	null
endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065238
CTCF_GM12891_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
suppressed	GeneRIF Biological Term Annotations	1.0	null
cytoplasmic chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.158502
NCIH1915	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54516
CTCF_fibroblast of the aortic adventitia_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_HeLa-S3_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_PFSK-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_GM12873_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KMS-28BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09839
POLR2A_testis_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
let7bg	GeneRIF Biological Term Annotations	1.0	null
tooth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073646
H3K4me1_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
stress	GeneRIF Biological Term Annotations	1.0	null
thoracic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.499997
POLR2AphosphoS2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054274
HCC1395	CCLE Cell Line Gene CNV Profiles	1.0	1.64352
rnasensing	GeneRIF Biological Term Annotations	1.0	null
bone marrow cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.108345
A4/FUK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.5975
CHD1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
miR-targeted genes in muscle cell - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
HCC12	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55896
TE10	CCLE Cell Line Gene CNV Profiles	1.0	2.14835
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.580017
large intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.438658
melanoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.078262
SW 900	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.843254
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0859
Precancerous Conditions	CTD Gene-Disease Associations	1.0	2.88009
nfkappab	GeneRIF Biological Term Annotations	1.0	null
boris	GeneRIF Biological Term Annotations	1.0	null
dna	GeneRIF Biological Term Annotations	1.0	null
NFIC	JASPAR Predicted Transcription Factor Targets	1.0	null
melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.180084
KPL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.964598
POLR2A_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_HL-60_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MYC_MCF-7_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_MCF-7_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MEL-HO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04689
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.36318
skin	GTEx Tissue Gene Expression Profiles	1.0	1.42002
retinal pigment epithelium cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.163947
LN-229	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26347
myeloid leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.254536
H3K9me3_megakaryocyte_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
conserved	GeneRIF Biological Term Annotations	1.0	null
arterial	GeneRIF Biological Term Annotations	1.0	null
COLO 679	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.928207
lung	GeneRIF Biological Term Annotations	1.0	null
miRNAs involved in DNA damage response(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
KNS-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.844442
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.48727
rather	GeneRIF Biological Term Annotations	1.0	null
respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.074054
MCF-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22486
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062104
colorectal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068397
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.290308
directly	GeneRIF Biological Term Annotations	1.0	null
infarction	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_HCT116_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Inflammation	CTD Gene-Disease Associations	1.0	1.09083
RCOR1_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_bronchial epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_HL-60_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
E2F6	ENCODE Transcription Factor Targets	1.0	null
TCF12_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ABC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.97671
et1	GeneRIF Biological Term Annotations	1.0	null
CTCF_MCF-7_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_epithelial cell of esophagus_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.077075
POLR2A_MCF-7_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NR3C1_A549_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_kidney_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
retina	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080816
exposure	GeneRIF Biological Term Annotations	1.0	null
rs61764370	GeneRIF Biological Term Annotations	1.0	null
NCI-H2803	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.919365
TCF12_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TCF12_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of the aortic adventitia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.112237
NCI-H1155	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55896
H3K9ac_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
rearrangement	GeneRIF Biological Term Annotations	1.0	null
uterus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07027
ovary	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.249653
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	1.32044
ZBTB7A	ENCODE Transcription Factor Targets	1.0	null
HCC2270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.0581
REST-21632747-MESC-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
neuronal	GeneRIF Biological Term Annotations	1.0	null
salivary gland adenoid cystic carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.19742
16934749-Table3	GeneSigDB Published Gene Signatures	1.0	null
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.868208
serum	GeneRIF Biological Term Annotations	1.0	null
decreases	GeneRIF Biological Term Annotations	1.0	null
intestinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.436026
POLR2AphosphoS5_Panc1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.443923
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.22279
agerelated	GeneRIF Biological Term Annotations	1.0	null
EZH2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulatory	GeneRIF Biological Term Annotations	1.0	null
colorectal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068931
NCIH1092	CCLE Cell Line Gene CNV Profiles	-1.0	-2.47669
breast cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.233446
correlate	GeneRIF Biological Term Annotations	1.0	null
MCF7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41569
epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.505887
EP300	ENCODE Transcription Factor Targets	1.0	null
risk	GeneRIF Biological Term Annotations	1.0	null
artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056444
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78322
EJM	CCLE Cell Line Gene CNV Profiles	-1.0	-2.41423
CTCF_BJ_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RBBP5	ENCODE Transcription Factor Targets	1.0	null
intracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.228819
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.868208
reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.384822
shown	GeneRIF Biological Term Annotations	1.0	null
CAL148	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55028
cystadenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.128371
atm	GeneRIF Biological Term Annotations	1.0	null
EP300_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.649749
squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059499
beta	GeneRIF Biological Term Annotations	1.0	null
CL11	CCLE Cell Line Gene CNV Profiles	1.0	1.65067
HDLM2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33997
CTCF_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PBX3	ENCODE Transcription Factor Targets	1.0	null
pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.118511
CTCF_BE2C_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
elevated	GeneRIF Biological Term Annotations	1.0	null
induce	GeneRIF Biological Term Annotations	1.0	null
ZBTB7A_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.385051
POLR2A_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
dependent	GeneRIF Biological Term Annotations	1.0	null
CTCF_HeLa-S3_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.178877
H3K36me3_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
RUNX1-22412390-EML-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
infection	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_bone marrow macrophage_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
mitochondrial nucleoid	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.158882
smooth	GeneRIF Biological Term Annotations	1.0	null
neurodegeneration	GeneRIF Biological Term Annotations	1.0	null
genome	GeneRIF Biological Term Annotations	1.0	null
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05204
viral	GeneRIF Biological Term Annotations	1.0	null
influencing	GeneRIF Biological Term Annotations	1.0	null
than	GeneRIF Biological Term Annotations	1.0	null
cytoplasmic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042879
BT-483	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22486
fetus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065575
myeloid leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.10098
POLR2AphosphoS5_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HEC251	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67206
ZKSCAN1	ENCODE Transcription Factor Targets	1.0	null
largevessel	GeneRIF Biological Term Annotations	1.0	null
prognostic	GeneRIF Biological Term Annotations	1.0	null
inhibiting	GeneRIF Biological Term Annotations	1.0	null
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065054
MITF	ChEA Transcription Factor Targets	1.0	null
CTCF_foreskin fibroblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
coding	GeneRIF Biological Term Annotations	1.0	null
STAT5-23275557-MAMMARY-EPITHELIUM-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
s473	GeneRIF Biological Term Annotations	1.0	null
MYOG	ENCODE Transcription Factor Targets	1.0	null
multiple myeloma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.175701
E2F4_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
rpmi-8226 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.324239
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.249653
POLR2A_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
related	GeneRIF Biological Term Annotations	1.0	null
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.433757
POLR2A_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HDAC6_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mutational	GeneRIF Biological Term Annotations	1.0	null
retinal stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.381379
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.962884
value	GeneRIF Biological Term Annotations	1.0	null
U266B1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.75457
POLR2A_MEL cell line_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04781
SUPHD1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76537
endothelial	GeneRIF Biological Term Annotations	1.0	null
POLR2A_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hours	GeneRIF Biological Term Annotations	1.0	null
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27869
sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.233183
central nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046906
targets	GeneRIF Biological Term Annotations	1.0	null
HDAC2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
namalwa cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.489447
mir18b	GeneRIF Biological Term Annotations	1.0	null
carcinosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.557509
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.827849
leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.448441
thereby	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_HCT116_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
serous cystadenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.170789
pancreatic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.253831
erbb2	GeneRIF Biological Term Annotations	1.0	null
WM1799	CCLE Cell Line Gene CNV Profiles	1.0	2.08599
bone marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081631
U937	CCLE Cell Line Gene CNV Profiles	-1.0	-2.1952
TET1-21451524-MESC-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
other source	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.077384
macular holes	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.459751
CTCF_brain microvascular endothelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05204
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.570021
CTCF_kidney_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
tlr7	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM19239_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1944	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.43355
adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.592845
STAT5A	ChEA Transcription Factor Targets	1.0	null
colorectal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067893
affecting	GeneRIF Biological Term Annotations	1.0	null
leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063028
well	GeneRIF Biological Term Annotations	1.0	null
ABC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.77586
POLR2AphosphoS5_PFSK-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
oral	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_Panc1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.983057
CTCF_pancreas_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ChIP_REST_21632747	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
LMSU	CCLE Cell Line Gene CNV Profiles	1.0	1.51654
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.69475
monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043429
colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058628
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059474
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1334
H2AK5ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.363567
arterial endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.313683
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.827849
let7a	GeneRIF Biological Term Annotations	1.0	null
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.827145
g-401 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.945226
H3K36me3_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1768
NCIH292	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48805
SMC3_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2AphosphoS5_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
blood vessel endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075986
ZNF263_HEK293_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
p53	GeneRIF Biological Term Annotations	1.0	null
hpylori	GeneRIF Biological Term Annotations	1.0	null
b-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.104838
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.355944
NALM1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44587
tlr	GeneRIF Biological Term Annotations	1.0	null
MAZ_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lacrimal apparatus disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.072143
vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064191
HCC1143	CCLE Cell Line Gene CNV Profiles	1.0	2.60035
HCC33	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.827145
muscle	GTEx Tissue Gene Expression Profiles	-1.0	-1.17464
ZKSCAN1_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
tear	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.448346
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06521
papillary adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.291898
NCI-H2228	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1334
POLR2AphosphoS5_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
uterine cervix	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.100745
POLR2AphosphoS5_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.390421
H3K9me3_megakaryocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_fibroblast of upper leg skin_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
miR-targeted genes in lymphocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
urinary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.052534
SIRT6	ENCODE Transcription Factor Targets	1.0	null
colorectal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.43941
SKMEL2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41975
retinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.056241
EP300_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hmga1	GeneRIF Biological Term Annotations	1.0	null
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
rectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063147
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04689
H3K27ac_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
postami	GeneRIF Biological Term Annotations	1.0	null
gingiva	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.142292
female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.335046
lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061365
oral cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.43989
colonic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061483
tear gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.185967
GAK	COSMIC Cell Line Gene CNV Profiles	1.0	2.14116
CTCF_fibroblast of mammary gland_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
oral cavity cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.080016
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17967
20068076-Table3	GeneSigDB Published Gene Signatures	1.0	null
myeloid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.235167
20068076-SuppTable4	GeneSigDB Published Gene Signatures	1.0	null
blood vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067107
JHH7	CCLE Cell Line Gene CNV Profiles	1.0	1.50924
CTCF_H54_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_kidney epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070829
syncytial	GeneRIF Biological Term Annotations	1.0	null
liver	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.279307
EP300_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
colorectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05696
VCAP	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21047
suppressor	GeneRIF Biological Term Annotations	1.0	null
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52586
E2F4	ENCODE Transcription Factor Targets	1.0	null
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.641238
autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044092
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.762811
mesenchyme	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.405176
MITF-21258399-MELANOMA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
controls	GeneRIF Biological Term Annotations	1.0	null
HCC2935	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.869161
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.636785
NR3C1	ENCODE Transcription Factor Targets	1.0	null
immunity	GeneRIF Biological Term Annotations	1.0	null
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.333028
miR-targeted genes in epithelium - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
Lung Neoplasms	CTD Gene-Disease Associations	1.0	1.31985
myeloid leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.090264
salivary gland carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.142533
624 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41357
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.873655
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059179
CTCF_keratinocyte_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Ovarian Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
atypical teratoid rhabdoid tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.508808
POLR2A_olfactory bulb_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
143B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.951676
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04781
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.57082
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.827145
lens disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.194865
endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060397
H3K4me1_olfactory bulb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
EPLC272H	CCLE Cell Line Gene CNV Profiles	1.0	1.36485
squamous epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058084
micro-ribonucleoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.953528
cytoplasmic ribonucleoprotein granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.113122
kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.06459
lymphoblastic leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.505356
H3K36me3_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_brain microvascular endothelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
modulation	GeneRIF Biological Term Annotations	1.0	null
renal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.16622
PHF8_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
microvessel	GeneRIF Biological Term Annotations	1.0	null
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.919072
mir30b	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of skin of abdomen_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CHD2	ENCODE Transcription Factor Targets	1.0	null
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50824
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32004
myocardial	GeneRIF Biological Term Annotations	1.0	null
vitreous humor	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.265725
ZBTB33	ENCODE Transcription Factor Targets	1.0	null
downregulation	GeneRIF Biological Term Annotations	1.0	null
immune	GeneRIF Biological Term Annotations	1.0	null
cataracts	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_kidney_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
miR-targeted genes in leukocytes - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
gastrointestinal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059707
ribonucleoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.061635
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.253248
MYC	ENCODE Transcription Factor Targets	1.0	null
H4K20me1_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ls-174t cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.2779
radiation	GeneRIF Biological Term Annotations	1.0	null
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
POLR2A_cortical plate_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAX_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
prostate	GeneRIF Biological Term Annotations	1.0	null
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00581
melanocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073254
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
myeloma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.136552
CTCF_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
let7b	GeneRIF Biological Term Annotations	1.0	null
20068076-Table2	GeneSigDB Published Gene Signatures	1.0	null
H3K36me3_bronchial epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
plasma	GeneRIF Biological Term Annotations	1.0	null
large intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056728
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.636785
Liver Neoplasms	CTD Gene-Disease Associations	1.0	1.2013
hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.474877
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.06018
nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.218374
H3K9ac_Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K36me3_spleen_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH2073	CCLE Cell Line Gene CNV Profiles	1.0	1.54576
carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.374809
urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.055462
downstream	GeneRIF Biological Term Annotations	1.0	null
bone marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080471
ovary epithelial cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.382594
density	GeneRIF Biological Term Annotations	1.0	null
CTCF_mammary epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_keratinocyte_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
concentration	GeneRIF Biological Term Annotations	1.0	null
myeloma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.14753
COLO679	CCLE Cell Line Gene CNV Profiles	1.0	1.3606
CHD1	ENCODE Transcription Factor Targets	1.0	null
microrna	GeneRIF Biological Term Annotations	1.0	null
pancreatic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.357802
pulmonary	GeneRIF Biological Term Annotations	1.0	null
pyelonephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.161716
retinal pigment epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.156311
H3K4me2_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_HEK293_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HS 936.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10809
higher	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
loss	GeneRIF Biological Term Annotations	1.0	null
breast cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061357
papillary serous adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.460129
H3K36me3_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
rhabdoid cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.406051
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.387365
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068665
myeloid progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064292
respiratory	GeneRIF Biological Term Annotations	1.0	null
E2F6_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_keratinocyte_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.41848
KMS-28PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13264
choriodecidua	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.600881
PBX3_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
tumours	GeneRIF Biological Term Annotations	1.0	null
vitreous chamber of the eye	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.254239
serous	GeneRIF Biological Term Annotations	1.0	null
blood plasma	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.245175
NFIC	ENCODE Transcription Factor Targets	1.0	null
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.06648
CL-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18626
eye	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.089292
extracellular	GeneRIF Biological Term Annotations	1.0	null
adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.430695
cervical carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.133338
cervical adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.92805
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.919365
MAX	ENCODE Transcription Factor Targets	1.0	null
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.9898
breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.500761
outcomes	GeneRIF Biological Term Annotations	1.0	null
inferior vena cava	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.215928
vena cava	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.179979
embryonic neural stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.175938
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10809
reduced	GeneRIF Biological Term Annotations	1.0	null
nonsmallcell	GeneRIF Biological Term Annotations	1.0	null