association	dataset	threshold value	standardized value
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.519647
prostate cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.638676
biological	GeneRIF Biological Term Annotations	1.0	null
rectal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06682
demonstrated	GeneRIF Biological Term Annotations	1.0	null
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.161068
FOSL2_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.833836
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3659
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.716241
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10564
NFYA_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.896513
carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.584022
induced	GeneRIF Biological Term Annotations	1.0	null
synthesis	GeneRIF Biological Term Annotations	1.0	null
OVISE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10564
KPL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09038
autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046283
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.897373
acquired	GeneRIF Biological Term Annotations	1.0	null
eye cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.195125
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073835
hmepc cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.241746
epidermodysplasia verruciformis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.554791
nasopharynx carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.263014
H3K36me3_Mobilized CD34 Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059632
oci-aml3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.18867
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057831
H3K36me3_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
UM-UC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24804
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.215412
Necrosis	CTD Gene-Disease Associations	1.0	1.23806
SNU387	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3594
seedling	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059333
hacat	GeneRIF Biological Term Annotations	1.0	null
H3K79me2_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
neoplastic	GeneRIF Biological Term Annotations	1.0	null
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.897373
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.654618
map4k3	GeneRIF Biological Term Annotations	1.0	null
nose	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.16348
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
vrna	GeneRIF Biological Term Annotations	1.0	null
CMK115	CCLE Cell Line Gene CNV Profiles	1.0	2.18523
keratinocyte cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.118489
lovo cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.295655
liver cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060236
down syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.813052
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	1.13484
a549	GeneRIF Biological Term Annotations	1.0	null
trib2	GeneRIF Biological Term Annotations	1.0	null
NCI-H847	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.887317
pancreatic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.130414
CALU6	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.261624
leaf lamina	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.096702
esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.111121
reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.589001
renal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.387781
hepatocellular	GeneRIF Biological Term Annotations	1.0	null
mir212mir132	GeneRIF Biological Term Annotations	1.0	null
KCI-MOH1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62172
liver	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.23961
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.06564
laminin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.219617
ZR-75-30	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.91612
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03739
H2AFZ_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
renal	GeneRIF Biological Term Annotations	1.0	null
small cell lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.239307
themir125bmir99alet7c	GeneRIF Biological Term Annotations	1.0	null
itgb3	GeneRIF Biological Term Annotations	1.0	null
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052695
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.235964
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58667
esophageal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.100071
autosomal recessive disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.056398
overexpressed	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_fibroblast of lung_hg19_7	ENCODE Histone Modification Site Profiles	1.0	null
PRDM1_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
igf1r	GeneRIF Biological Term Annotations	1.0	null
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949323
ZR7530	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00401
p21ccnd1cdk6e2f1	GeneRIF Biological Term Annotations	1.0	null
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75088
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054467
20068076-Table2	GeneSigDB Published Gene Signatures	1.0	null
therapy	GeneRIF Biological Term Annotations	1.0	null
celllike	GeneRIF Biological Term Annotations	1.0	null
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4897
mir99alet7cmir125b	GeneRIF Biological Term Annotations	1.0	null
titres	GeneRIF Biological Term Annotations	1.0	null
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.292793
H3K4me3_fibroblast of pulmonary artery_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SCC-25	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18563
NFYB	ENCODE Transcription Factor Targets	1.0	null
NCI-H2810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.832777
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.991144
chromosomal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.606152
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.553286
adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.274376
blood cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071887
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.872414
liver carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.525746
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.354084
H3K4me2_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
suppressivefactor	GeneRIF Biological Term Annotations	1.0	null
OE21	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71708
extracellular region part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.050687
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.333979
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.991144
KPL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.09644
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
KYSE30	CCLE Cell Line Gene CNV Profiles	1.0	1.72088
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.16233
GATA3_SH-SY5Y_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
umbilical	GeneRIF Biological Term Annotations	1.0	null
metastasis	GeneRIF Biological Term Annotations	1.0	null
bronchogenic carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.926764
H3K4me3_mammary epithelial cell_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
contact	GeneRIF Biological Term Annotations	1.0	null
serve	GeneRIF Biological Term Annotations	1.0	null
NCI-H1688	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.91612
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.991707
mesenchymal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.516104
chemoresistant	GeneRIF Biological Term Annotations	1.0	null
myeloid leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.121564
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.643669
SCC-9	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.888332
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.178588
H3K4me3_fibroblast of gingiva_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
stratum spinosum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.101737
GR-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32185
good	GeneRIF Biological Term Annotations	1.0	null
RFX5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.833836
hepatoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.347778
prostate	GeneRIF Biological Term Annotations	1.0	null
kras	GeneRIF Biological Term Annotations	1.0	null
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.30464
portal vein thrombosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.342372
organ system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045592
antiegfr	GeneRIF Biological Term Annotations	1.0	null
colonic cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063178
cdk2	GeneRIF Biological Term Annotations	1.0	null
adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.564833
melanoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065943
CMK	CCLE Cell Line Gene CNV Profiles	1.0	1.89064
CALU-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.57879
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.979783
carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.18472
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KM-12	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25972
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042789
MKN74	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34587
H3K9ac_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H345	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50981
ovarian epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.603295
inhibited	GeneRIF Biological Term Annotations	1.0	null
TFAP2C_01_312	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.60019
H3K4me3_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
repressed	GeneRIF Biological Term Annotations	1.0	null
large intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057025
FADU	CCLE Cell Line Gene CNV Profiles	-1.0	-1.84939
HPAC	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71352
esophageal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.358174
H3K9me3_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
cluster	GeneRIF Biological Term Annotations	1.0	null
thorax	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055418
scleral disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.496557
current	GeneRIF Biological Term Annotations	1.0	null
coordinately	GeneRIF Biological Term Annotations	1.0	null
colonic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061984
H3K4me3_fibroblast of pulmonary artery_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
keratinocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.111981
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.978482
endothelial	GeneRIF Biological Term Annotations	1.0	null
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.872414
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05552
pancreatic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.2559
leaf epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.111133
extracellular matrix part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.063118
etiology	GeneRIF Biological Term Annotations	1.0	null
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.95534
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949323
breast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057024
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00002
spinal column	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.138764
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11635
acute	GeneRIF Biological Term Annotations	1.0	null
villus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.187575
Ovarian Neoplasms	CTD Gene-Disease Associations	1.0	1.17034
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.668742
mesenchyme	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.562042
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.873026
type iii intermediate filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.189222
FXR	MotifMap Predicted Transcription Factor Targets	1.0	null
colorectal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069203
NCI-H2461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.906501
overexpression	GeneRIF Biological Term Annotations	1.0	null
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.488667
hepatoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.371619
rectal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06725
colonic adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081392
immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.301976
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.98133
wart	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.723631
NCIH1694	CCLE Cell Line Gene CNV Profiles	1.0	1.97655
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05382
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.587228
mammary epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.08932
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50127
NCI-H2106	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40057
CTCF_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
leukemia	GeneRIF Biological Term Annotations	1.0	null
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056447
liver cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.359292
dermal papilla	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.264182
LUDLU1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.92872
stem	GeneRIF Biological Term Annotations	1.0	null
androgen	GeneRIF Biological Term Annotations	1.0	null
infected	GeneRIF Biological Term Annotations	1.0	null
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949323
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057348
RPMI-7951	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.906501
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22305
lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.577327
TE5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64154
Lung Diseases	CTD Gene-Disease Associations	1.0	1.21887
renal parenchyma	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.342602
hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.305948
kidney cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.06361
EZH2	ENCODE Transcription Factor Targets	1.0	null
leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060836
suggests	GeneRIF Biological Term Annotations	1.0	null
H3K4me1_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
myeloid	GeneRIF Biological Term Annotations	1.0	null
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
exerts	GeneRIF Biological Term Annotations	1.0	null
H3K36me3_U2OS_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15465
NCIH1792	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20312
hacat cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.218186
concluded	GeneRIF Biological Term Annotations	1.0	null
MEG-01	COSMIC Cell Line Gene CNV Profiles	1.0	2.14731
atypic	GeneRIF Biological Term Annotations	1.0	null
oxldl	GeneRIF Biological Term Annotations	1.0	null
prostate gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.35743
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052241
H3K4me3_HeLa-S3_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
sclera	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.309697
NCI-H1792	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.91612
genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.28151
cdc25a	GeneRIF Biological Term Annotations	1.0	null
liver cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.569941
aspc-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.751231
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062964
ovary	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061238
il10	GeneRIF Biological Term Annotations	1.0	null
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.05219
G130	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32185
H3K9me3_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_fibroblast of gingiva_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
Uterine Neoplasms	CTD Gene-Disease Associations	1.0	1.23488
H3K4me3_foreskin fibroblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SET2	CCLE Cell Line Gene CNV Profiles	1.0	2.00691
pattern	GeneRIF Biological Term Annotations	1.0	null
CTCF_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
prognostic	GeneRIF Biological Term Annotations	1.0	null
subarachnoid space	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.193822
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054735
NCI-H1694	COSMIC Cell Line Gene CNV Profiles	1.0	2.14731
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.42978
transcriptional	GeneRIF Biological Term Annotations	1.0	null
influenza	GeneRIF Biological Term Annotations	1.0	null
PA-TU-8902	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50127
hepatic vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.122352
H3K9me3_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
acute myeloid leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.383637
plumule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060338
cancerassociated	GeneRIF Biological Term Annotations	1.0	null
allograft	GeneRIF Biological Term Annotations	1.0	null
STAT3_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
downstream	GeneRIF Biological Term Annotations	1.0	null
HPAC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.66993
cdk4	GeneRIF Biological Term Annotations	1.0	null
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.833836
oncomir	GeneRIF Biological Term Annotations	1.0	null
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054574
scleral staphyloma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.30576
provides	GeneRIF Biological Term Annotations	1.0	null
colorectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057267
modulation	GeneRIF Biological Term Annotations	1.0	null
columnar cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.323509
SET-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55193
H3K36me3_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KHM-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.99791
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.184853
cancer stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.685551
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069036
seed	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057798
CAR-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
MDA-MB-468	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24804
hepatitis b	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.269753
pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.111248
Hyperplasia	CTD Gene-Disease Associations	1.0	1.49941
micrornaresistant	GeneRIF Biological Term Annotations	1.0	null
intermediate filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.110533
sweat gland neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.363716
renal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.0955
nonsmall	GeneRIF Biological Term Annotations	1.0	null
BEN	CCLE Cell Line Gene CNV Profiles	1.0	1.96125
H3K4me1_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCIH2106	CCLE Cell Line Gene CNV Profiles	1.0	1.64626
NCI-H1581	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.934309
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
time	GeneRIF Biological Term Annotations	1.0	null
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40737
properties	GeneRIF Biological Term Annotations	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
colorectal	GeneRIF Biological Term Annotations	1.0	null
vitro	GeneRIF Biological Term Annotations	1.0	null
glioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.092377
SHP-77	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.91612
DU 145	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5884
molecular	GeneRIF Biological Term Annotations	1.0	null
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06035
dermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.127813
nb-4 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.277197
H3K4me3_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_SK-N-SH_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
esophageal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.376119
colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059007
HCC202	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52782
Cell Transformation, Neoplastic	CTD Gene-Disease Associations	1.0	2.88009
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.099606
CAL12T	CCLE Cell Line Gene CNV Profiles	1.0	1.36136
selection	GeneRIF Biological Term Annotations	1.0	null
leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073367
H3K4me3_foreskin fibroblast_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
downregulation	GeneRIF Biological Term Annotations	1.0	null
HCC202	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.70598
let7cmediated	GeneRIF Biological Term Annotations	1.0	null
NCI-H2122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53334
TALL1	CCLE Cell Line Gene CNV Profiles	1.0	2.45466
link	GeneRIF Biological Term Annotations	1.0	null
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.199659
H4K20me1_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
SK-GT-2	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.91612
H3K9me3_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
non-small cell lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.885862
DBTRG05MG	CCLE Cell Line Gene CNV Profiles	1.0	1.72131
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.04798
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.831871
H3K4me3_fibroblast of mammary gland_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.327164
SAP30_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
non-small cell lung cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.448346
mammary epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.098112
colorectal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068675
H3K9me3_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
regulated	GeneRIF Biological Term Annotations	1.0	null
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09085
skin cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062922
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065708
hematopoietic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0694
brain cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.084134
regulating	GeneRIF Biological Term Annotations	1.0	null
y-79 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.625869
candidates	GeneRIF Biological Term Annotations	1.0	null
42MGBA	CCLE Cell Line Gene CNV Profiles	1.0	1.4129
eye	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.114615
melanoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064164
dexamethasone_homo sapiens_gpl6244_gse20963	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.651777
tuning	GeneRIF Biological Term Annotations	1.0	null
lymphoblastoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.32205
mir106bmir93mir25	GeneRIF Biological Term Annotations	1.0	null
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.873026
Neoplasms, Experimental	CTD Gene-Disease Associations	1.0	1.12771
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054338
congenital heart disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.253831
Inflammation	CTD Gene-Disease Associations	1.0	1.11911
internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.317679
LU99	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55831
MHHCALL2	CCLE Cell Line Gene CNV Profiles	1.0	1.56072
VCAP	CCLE Cell Line Gene CNV Profiles	1.0	1.59474
H3K79me2_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_HeLa-S3_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
germ layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.446038
H3K36me3_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BICR16	CCLE Cell Line Gene CNV Profiles	-1.0	-1.66514
colorectal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069759
wildtype	GeneRIF Biological Term Annotations	1.0	null
mir125b	GeneRIF Biological Term Annotations	1.0	null
gastrointestinal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060131
therapeutic	GeneRIF Biological Term Annotations	1.0	null
lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.777325
H3K4me3_fibroblast of lung_hg19_6	ENCODE Histone Modification Site Profiles	1.0	null
FOS	ENCODE Transcription Factor Targets	1.0	null
H3K4me2_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_foreskin fibroblast_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.581606
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052366
H3K36me3_cardiac mesoderm_hg19_8	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K36me3_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOSL2	ENCODE Transcription Factor Targets	1.0	null
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.95534
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24695
lung cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.610943
stromal	GeneRIF Biological Term Annotations	1.0	null
lung adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.31187
myeloid leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.28213
SAP30	ENCODE Transcription Factor Targets	1.0	null
compared	GeneRIF Biological Term Annotations	1.0	null
vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043225
pca	GeneRIF Biological Term Annotations	1.0	null
renal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.098866
H3K4me3_fibroblast of the aortic adventitia_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
KYO1	CCLE Cell Line Gene CNV Profiles	1.0	2.44738
KNS62	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53957
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.164315
protects	GeneRIF Biological Term Annotations	1.0	null
upregulated	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_astrocyte of the cerebellum_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
non-small cell lung adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.509813
urinary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053741
effectively	GeneRIF Biological Term Annotations	1.0	null
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.832777
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.35334
NCIH1838	CCLE Cell Line Gene CNV Profiles	1.0	1.50345
NCI-H196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.57879
anogenital venereal wart	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.442042
lens	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.104875
glial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.077413
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058625
lens epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.212586
large cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.03785
JUND_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pancreatic adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.461465
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
KNS-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4897
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02694
lung small cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.183248
status	GeneRIF Biological Term Annotations	1.0	null
effects	GeneRIF Biological Term Annotations	1.0	null
unfavorable	GeneRIF Biological Term Annotations	1.0	null
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.308612
eye and adnexa disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047913
JUND	ENCODE Transcription Factor Targets	1.0	null
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.194045
epidermal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066025
male reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.631205
factors	GeneRIF Biological Term Annotations	1.0	null
myoepithelioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.523045
hepatocellular carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.528063
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.390044
EHF_01_147	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.70935
kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06253
NUGC-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01897
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06104
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32185
vein	GeneRIF Biological Term Annotations	1.0	null
FOXA2	ENCODE Transcription Factor Targets	1.0	null
H3K27ac_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H2595	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.831871
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081218
SQ1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.82036
integumentary system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.08132
RAD21	ENCODE Transcription Factor Targets	1.0	null
KCIMOH1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5215
H3K36me3_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RAD21_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.178299
biomarker	GeneRIF Biological Term Annotations	1.0	null
adult liver stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.388535
a-549 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.510992
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042695
breast epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.084966
cytoskeletal part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043947
first	GeneRIF Biological Term Annotations	1.0	null
skin benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.082369
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.917875
renal clear cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.461261
transformation	GeneRIF Biological Term Annotations	1.0	null
apoptotic	GeneRIF Biological Term Annotations	1.0	null
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50127
cycle	GeneRIF Biological Term Annotations	1.0	null
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09085
Prenatal Exposure Delayed Effects	CTD Gene-Disease Associations	1.0	1.30604
HEL9217	CCLE Cell Line Gene CNV Profiles	1.0	1.34578
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58667
effect	GeneRIF Biological Term Annotations	1.0	null
arrest	GeneRIF Biological Term Annotations	1.0	null
NCIH838	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34648
adenocarcinoma	GeneRIF Biological Term Annotations	1.0	null
plant embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059333
epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.581218
H3K4me3_astrocyte of the cerebellum_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.279011
mir1792	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.873026
mammary epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.091899
eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.049163
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.290462
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.184853
lung adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.213959
FOS_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_HeLa-S3_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GATA3	ENCODE Transcription Factor Targets	1.0	null
virus	GeneRIF Biological Term Annotations	1.0	null
mesoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.507064
PRDM1	ENCODE Transcription Factor Targets	1.0	null
DU4475	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41686
NTERA-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50981
spinal cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070084
viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.055893
lung	GeneRIF Biological Term Annotations	1.0	null
vivo	GeneRIF Biological Term Annotations	1.0	null
lymphoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063452
NCIH2122	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46921
clusters	GeneRIF Biological Term Annotations	1.0	null
pharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071815
prostate carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.446558
hypocotyl	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060029
colorectal adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074736
plant form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056896
H3K4me3_fibroblast of mammary gland_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.249653
stoma	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.311145
colonic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062205
20028859-TableS2	GeneSigDB Published Gene Signatures	1.0	null
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057633
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00002
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50981
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.380627
mushroom body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.571219
let7	GeneRIF Biological Term Annotations	1.0	null
CTCF_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21339
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.979783
RT112	CCLE Cell Line Gene CNV Profiles	1.0	1.63231
H3K9me3_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
DOV13	CCLE Cell Line Gene CNV Profiles	1.0	1.41926
CALU-6	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.91612
mir99alet7c125b2	GeneRIF Biological Term Annotations	1.0	null
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02694
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052376
common	GeneRIF Biological Term Annotations	1.0	null
melanocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063114
NFYB_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me2_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
POLR2A_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
shoot	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056482
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.250663
variant	GeneRIF Biological Term Annotations	1.0	null
mesenchymal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.232599
cord	GeneRIF Biological Term Annotations	1.0	null
COLO320	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44035
HS 936.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949323
RFX5	ENCODE Transcription Factor Targets	1.0	null
altering	GeneRIF Biological Term Annotations	1.0	null
glial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.094827
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052922
HCC366	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5925
childhood leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.348614
STAT3	ENCODE Transcription Factor Targets	1.0	null
19924232-TableS1	GeneSigDB Published Gene Signatures	1.0	null
RKN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.845256
heart disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047693
suppressor	GeneRIF Biological Term Annotations	1.0	null
suppresses	GeneRIF Biological Term Annotations	1.0	null
sense organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.096292
downregulated	GeneRIF Biological Term Annotations	1.0	null
JIMT1	CCLE Cell Line Gene CNV Profiles	1.0	1.4767
SOX10	MotifMap Predicted Transcription Factor Targets	1.0	null
WM88	CCLE Cell Line Gene CNV Profiles	1.0	1.65074
OVCAR8	CCLE Cell Line Gene CNV Profiles	1.0	1.75009
H2AFZ_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40765
vein disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.09734
olfactory organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.598067
larva	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.61699
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.873026
a-375 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.451813
NCIH196	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21046
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.832777
rectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063721
retinoblastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.213741
improve	GeneRIF Biological Term Annotations	1.0	null
nevi	GeneRIF Biological Term Annotations	1.0	null
SHP77	CCLE Cell Line Gene CNV Profiles	-1.0	-2.3514
FOS_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.267102
mirna	GeneRIF Biological Term Annotations	1.0	null
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.37017
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059579
JHUEM3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39862
let7c	GeneRIF Biological Term Annotations	1.0	null
calu-6 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.6182
H2AFZ_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BEN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.99791
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24804
pancreatic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.260891
breast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059376
alone	GeneRIF Biological Term Annotations	1.0	null
proliferation	GeneRIF Biological Term Annotations	1.0	null
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.872414
intestinal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060131
rs61764370	GeneRIF Biological Term Annotations	1.0	null
chamber of the eye	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.221291
metastatic	GeneRIF Biological Term Annotations	1.0	null
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.717061
20485376-TableS3	GeneSigDB Published Gene Signatures	1.0	null
laminin-5 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.328332
signature	GeneRIF Biological Term Annotations	1.0	null
esophageal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.415024
form	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_cardiac fibroblast_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_fibroblast of foreskin _hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
NFYA	ENCODE Transcription Factor Targets	1.0	null
ovary epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.169685
g1phase	GeneRIF Biological Term Annotations	1.0	null
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.833836
glia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.076748
OE19	CCLE Cell Line Gene CNV Profiles	-1.0	-2.09288
rather	GeneRIF Biological Term Annotations	1.0	null
PA-TU-8988S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.95534
epigenetic	GeneRIF Biological Term Annotations	1.0	null
DU4475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26464
myc	GeneRIF Biological Term Annotations	1.0	null
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.229568
H3K79me2_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
inhibition	GeneRIF Biological Term Annotations	1.0	null
non-small cell lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.550134
NCI-H196	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.91612
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35111
adult	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.36825
silencing	GeneRIF Biological Term Annotations	1.0	null
either	GeneRIF Biological Term Annotations	1.0	null
members	GeneRIF Biological Term Annotations	1.0	null
Metastatic brain tumor(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
acquisition	GeneRIF Biological Term Annotations	1.0	null
arsenite	GeneRIF Biological Term Annotations	1.0	null
microrna	GeneRIF Biological Term Annotations	1.0	null
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11635
acute promyelocytic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.344079
TF1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39296
differentiation	GeneRIF Biological Term Annotations	1.0	null
pancreatic cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.263669
TGM2_KD_GSE23702_715_human_NB4 cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052945
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05928
retinoblastoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.529903
H3K4me3_cardiac fibroblast_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.654463
H3K36me3_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_fibroblast of the aortic adventitia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.52556
chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.165231
H3K4me2_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.087387
glioma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.159037
H4K20me1_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
TGBC1TKB	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.91612
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.215412
functions	GeneRIF Biological Term Annotations	1.0	null
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24695
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.874075
sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046564
20054351-Table2	GeneSigDB Published Gene Signatures	1.0	null
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.897373
HCC827	CCLE Cell Line Gene CNV Profiles	1.0	3.24716
monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045334
HCC1534	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.6042
nasopharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.299242
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09085
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.191777
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.9696
A-431	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05987
acute myeloid leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.156589
rasnfkappab	GeneRIF Biological Term Annotations	1.0	null
FOXA2_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9me3_U2OS_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043749
NCIH661	CCLE Cell Line Gene CNV Profiles	1.0	1.43615
SNU-484	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.26043
H3K4me3_LNCaP clone FGC_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
H2AFZ_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me2_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
cd154	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_BE2C_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
directly	GeneRIF Biological Term Annotations	1.0	null
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.57879
inhibit	GeneRIF Biological Term Annotations	1.0	null
NCI-H2052	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24804
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.71357
pharynx cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.122464
lung cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.543359
H3K4me1_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
miR-targeted genes in muscle cell - TarBase(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044217
RB1_KD_GSE50532_623_human_OSTEOBLASTS	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.999235
markedly	GeneRIF Biological Term Annotations	1.0	null
EZH2_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null