association	dataset	threshold value	standardized value
BRD-K56431031	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.20705
Parasitic infectious disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.746
Uterine benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.241
Ileocecum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
CRCGN013_HEPG2_24H:O01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.32107
STRADA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.02117
BRD-K03562091	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.18881
CRCGN014_HEPG2_24H:K02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	9.46254
autosomal dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.052831
CRCGN013_HEPG2_24H:O02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.5309
RBM25	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77608
Pleural mesothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.934
OE-21 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.998
CORL95	CCLE Cell Line Gene Expression Profiles	1.0	2.1892
CRCGN016_MCF10A.TP53.M_24H:E17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.00578
BRD-K47445962	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.16305
BRD-K82019575	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.29195
responsible	GeneRIF Biological Term Annotations	1.0	null
BRD-K16604405	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.4878
FGFR3_knockdown_173_GSE41035	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.79497
BRD-K52202153	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.41027
MCC26	DepMap CRISPR Gene Dependency	1.0	2.91088
SLC26A11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.53003
calciumdependent	GeneRIF Biological Term Annotations	1.0	null
ventrolateral prefrontal cortex_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.843156
early	GeneRIF Biological Term Annotations	1.0	null
TE1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.95276
BCL6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.851
multicellular organismal metabolic process	GO Biological Process Annotations 2015	1.0	null
skeletal muscle cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.115779
GSE182179_2_v_3_kdsr_human	RummaGEO Gene Perturbation Signatures	-1.0	null
HAPLN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.1964
Kidney Chromophobe_KICH_TCGA-KO-8408-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TMEM86B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.19971
BRD-K45022385	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.17444
extracellular region	LOCATE Curated Protein Localization Annotations	1.0	null
SF295	Achilles Cell Line Gene Essentiality Profiles	1.0	2.02575
A204	CCLE Cell Line Gene Expression Profiles	-1.0	-1.54561
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A70H-01A-12R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
fibroblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.13834
Elimusertib hydrochloride_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0198784
OXA1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.32198
BRD-K60507129	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.15211
BRD-K14116382	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.32292
KYSE-410	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CRCGN013_HEPG2_24H:O05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.30689
BRD-K41185648	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.02474
BRD-K48727830	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.06164
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043512
biological regulation	GO Biological Process Annotations 2015	1.0	null
KG1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.85122
region	GeneRIF Biological Term Annotations	1.0	null
HCC1806	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.61932
PMC7997806-41397_2020_194_MOESM2_ESM.xlsx-MAGMA_GENE_MAP_AA-GENE_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
DPM3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.99476
cellular_component	LOCATE Curated Protein Localization Annotations	1.0	null
CRCGN012_HEPG2_24H:D09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.23251
uterus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.17979
TBX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.9098
BRD-K59046641	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.55288
leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059302
BRD-K06218527	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01441
BRD-K87176777	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.46944
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A8YT-01A-11R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K72216066	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.19049
ZNF274	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.7575
midsecretory	GeneRIF Biological Term Annotations	1.0	null
SW 900	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.02651
Skin Cutaneous Melanoma_SKCM_TCGA-GN-A263-01A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K39600742	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.9482
Artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.328
ductal carcinoma in situ	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.459751
Malaria	GWAS Catalog SNP-Phenotype Associations 2025	1.0	6.83979
Peptidase M10, metallopeptidase	InterPro Predicted Protein Domain Annotations	1.0	null
jnk	GeneRIF Biological Term Annotations	1.0	null
L363	CCLE Cell Line Gene Expression Profiles	1.0	1.38781
TTLL7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.89274
OC314	DepMap CRISPR Gene Dependency	1.0	2.32671
pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070817
COLO668	CCLE Cell Line Gene Expression Profiles	1.0	1.89711
BRD-K76672145	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14893
subclasses	GeneRIF Biological Term Annotations	1.0	null
PRPF4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.29125
Amniochorion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.038
PTPRU	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.63001
esophageal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.617796
BRD-A99644411	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.97134
Disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.746
Skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.238
being	GeneRIF Biological Term Annotations	1.0	null
Pentamidine (isethionate)_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	1.0	0.0100807
T84	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78784
MEL-HO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851979
Hyperglycemia	HuGE Navigator Gene-Phenotype Associations	1.0	null
BRD-K62800316	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.67859
Kidney renal clear cell carcinoma_KIRC_TCGA-T7-A92I-01A-11R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SNU1066	CCLE Cell Line Gene Expression Profiles	-1.0	-1.46112
COLO 201	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17367
SNU-638	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32755
Mesothelioma_MESO_TCGA-SC-A6LP-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.7078
cancer	GAD High Level Gene-Disease Associations	1.0	0.293278
BRD-K04757670	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15619
Extravillous trophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.837
Musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.28
OVCAR-3	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K76904668	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00547
Astrocytoma	DisGeNET Gene-Disease Associations	1.0	null
BRD-K12230293	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.13202
all	GWASdb SNP-Phenotype Associations	1.0	0.084337
BRD-K35861449	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.04681
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
tonsil	HPA Tissue Protein Expression Profiles	-1.0	-1.51724
SCRT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.8244
IDS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.24685
PRKACA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.11197
BRD-K23831817	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.8441
HTR-8/SVneo cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.837
BRD-K48325920	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.46766
CSAD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.80323
KLLN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11576
papillary serous adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.590169
plant form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05591
BRD-K19085288	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.52272
TFE3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0131
BRD-K53335788	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.88628
protein complex involved in cell adhesion	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.08286
OSBPL8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.59299
FOXO4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6331
FAM117B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.71359
implantation	GeneRIF Biological Term Annotations	1.0	null
abnormality of the biliary system	GWASdb SNP-Phenotype Associations	1.0	1.08891
FAM110D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.83698
experiencing	GeneRIF Biological Term Annotations	1.0	null
mature ovarian follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.16887
Reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.818
KRI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15389
proteolysis	GO Biological Process Annotations 2025	1.0	null
microvascular endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.102544
RPLP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.65557
BRD-K67874412	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.52243
BRD-K86750448	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.89801
primary metabolic process	GO Biological Process Annotations 2015	1.0	null
BRD-K61590534	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.05564
BRD-K97468369	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.81459
ZNF19	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.04556
SF3A3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86295
PMC2749258__F3	PFOCR Pathway Figure Associations 2024	1.0	null
SHP77	CCLE Cell Line Gene Expression Profiles	1.0	2.30513
BRD-K43729445	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.4975
regulation of inflammatory response	GO Biological Process Annotations 2025	1.0	null
demonstrate	GeneRIF Biological Term Annotations	1.0	null
ovarian follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.159836
BRD-K60948317	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.07645
BRD-K39709957	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.89589
Uterine endometrial epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.74
WSU-NHL	GDSC Cell Line Gene Expression Profiles	1.0	1.9708
Tumor Progression	DisGeNET Gene-Phenotype Associations	1.0	null
BRD-K65446780	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	5.63053
maturation	GeneRIF Biological Term Annotations	1.0	null
RPSA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.20248
A172	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.25629
BRD-K60743396	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.08364
extracellular region part	GO Cellular Component Annotations 2015	1.0	null
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.008
Brain Lower Grade Glioma_LGG_TCGA-HT-8113-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POU3F2-20337985-501MEL-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
decreased	GeneRIF Biological Term Annotations	1.0	null
Prostatic Intraepithelial Neoplasias	DisGeNET Gene-Disease Associations	1.0	null
adrenal gland	HPA Tissue Protein Expression Profiles	1.0	0.98309
prostate gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.497266
BRD-K52620056	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.50309
endopeptidase activity	GO Molecular Function Annotations 2025	1.0	null
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
disease of anatomical entity	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	1.59286
showed	GeneRIF Biological Term Annotations	1.0	null
LXFL529	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40552
NAA38	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80978
AML193	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.3755
proteinaceous extracellular matrix	GO Cellular Component Annotations 2015	1.0	null
naringin-2425	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Embryonic structure	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
BRD-K42828928	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.28101
COA6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.19431
SPEF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.80881
esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.191055
PPARG	JASPAR Predicted Transcription Factor Targets	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-K7-A5RG-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NECAB3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.5742
LI7	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
BRD-K03116744	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.34758
Chorionic villus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.167
BRD-A04975445	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.40421
Lung	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
disorde	GeneRIF Biological Term Annotations	1.0	null
BLTP3B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2665
lymphadenitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.105456
Prostate adenocarcinoma_PRAD_TCGA-G9-6354-01A-11R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K71604365	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00782
Lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.25
IFT80	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61639
breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.270464
external encapsulating structure organization	GO Biological Process Annotations 2025	1.0	null
496100306_FWM_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.47111
coronary artery smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.423818
CRCGN017_MCF10A.TP53.M_24H:O08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.52545
UBE2L6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.09829
Lung adenocarcinoma_LUAD_TCGA-55-8620-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K90697692	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.10346
MYF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.4831
Colorectal adenoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.545
predominantly	GeneRIF Biological Term Annotations	1.0	null
Ameloblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.324
metal ion binding	GO Molecular Function Annotations 2015	1.0	null
laminin-5 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.590973
CRCGN009_HEPG2_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.94298
Mucocutaneous Lymph Node Syndrome	HuGE Navigator Gene-Phenotype Associations	1.0	null
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24855
Prostate adenocarcinoma_PRAD_TCGA-HC-7080-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-7325-01B-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-G7-A8LC-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cinacalcet_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0231119
786	BioGPS Cell Line Gene Expression Profiles	1.0	0.941607
BRD-K87669186	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.5177
BRD-K73504196	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.02214
MON	DepMap CRISPR Gene Dependency	1.0	4.03628
H1-6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.1355
RRM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.1707
promoting	GeneRIF Biological Term Annotations	1.0	null
Osgood-Schlatter's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.755
Systolic Pressure	DisGeNET Gene-Phenotype Associations	1.0	null
embryo	GeneRIF Biological Term Annotations	1.0	null
spontaneously	GeneRIF Biological Term Annotations	1.0	null
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.49844
BRD-K71437774	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.50985
BRD-K46970272	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.30606
skin fibroblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.51335
Choriocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.307
BRD-K56857396	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.64865
along	GeneRIF Biological Term Annotations	1.0	null
MYF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.1581
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.254239
Calcium	HMDB Metabolites of Enzymes	1.0	null
BRD-K45050268	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.31249
BRD-K95648552	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.0551
breast adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.289226
prostate disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.190168
primary motor cortex (area M1, area 4)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.938652
fluid	GeneRIF Biological Term Annotations	1.0	null
BRD-K53356402	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.46175
CRCGN015_MCF10A.TP53.M_24H:M13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.13235
DNTTIP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.16287
POU3F2	ChEA Transcription Factor Targets	1.0	null
cartilage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.100884
primary auditory cortex (core)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.868113
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.00676
Plasmacytoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.751
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.953491
least	GeneRIF Biological Term Annotations	1.0	null
ZNF853	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.36974
LHFPL4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.12934
TMEM240	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.53743
Skin Carcinogenesis	DisGeNET Gene-Disease Associations	1.0	null
BRD-K53291208	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.27286
prostatic	GeneRIF Biological Term Annotations	1.0	null
BRD-K33705415	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.33326
SW872	COSMIC Cell Line Gene Mutation Profiles	1.0	null
pathobiology	GeneRIF Biological Term Annotations	1.0	null
BRD-K47052171	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14879
Lopinavir_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.02718
ATP2C1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.73711
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2097
Arteriosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.128
GATA3-26560356-CHIP-SEQ-TH1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Cecum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
MPI	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11185
upregulation	GeneRIF Biological Term Annotations	1.0	null
DMS153	CCLE Cell Line Gene Expression Profiles	1.0	1.85986
GSE144500_8_v_2_ventx_human	RummaGEO Gene Perturbation Signatures	1.0	null
FOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3383
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Theca externa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.064
ZFAND3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.57956
viral infectious disease	GWASdb SNP-Disease Associations	1.0	0.301375
BRD-K80940089	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.12111
distinguish	GeneRIF Biological Term Annotations	1.0	null
SW 620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13438
BRD-K61505971	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.03722
extracellular matrix organization	GO Biological Process Annotations 2025	1.0	null
FOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4696
Prostate disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.506
SHOX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.167
sarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.307528
papillary adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.416147
JUND_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
inherited metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045736
BRD-K75637705	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14365
HMBOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.979
aggressive	GeneRIF Biological Term Annotations	1.0	null
Lung adenocarcinoma_LUAD_TCGA-55-7913-01B-11R-2241-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NUPR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.33127
HCC1599	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.14817
Elastic fiber	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.973
HS578T	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.682305
vascular disease	GWASdb SNP-Disease Associations	1.0	0.116245
BRD-K33283629	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.87243
present	GeneRIF Biological Term Annotations	1.0	null
HCC1500	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.721177
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.928508
BRD-K93942001	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.39405
Plicamycin_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	1.0	0.0219256
immune system disease	GWASdb SNP-Disease Associations	1.0	0.075928
NUP133	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.35876
abnormality of cells of the erythroid lineage	GWASdb SNP-Phenotype Associations	1.0	0.324422
benign	GeneRIF Biological Term Annotations	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-QM-A5NM-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
diffuse large b-cell lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.781478
colorectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055897
hormonal	GeneRIF Biological Term Annotations	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-AK-3447-01A-01R-1766-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
thoracic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.269753
prostate	GeneRIF Biological Term Annotations	1.0	null
BRD-K25280080	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.14058
chorion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.194765
lip	GeneRIF Biological Term Annotations	1.0	null
squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.106489
BRD-K49391713	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.04052
Gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.561
Belumosudil_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0212422
HADHB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.01622
negative regulation of inflammatory response	GO Biological Process Annotations 2025	1.0	null
CRCGN015_MCF10A.WT.HP_24H:B04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.08127
BRD-K94062017	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.26771
RUNX1T1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82772
Coenzyme Q10 levels	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.569897
STRN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.57663
Large intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.417
inferolateral temporal cortex (area TEv, area 20)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.67631
coronary artery smooth muscle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.456442
ILOMASTAT	DGIdb Drug Targets 2026	1.0	2.94067
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A81K-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RBBP5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.089
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.5099
NY	COSMIC Cell Line Gene Mutation Profiles	1.0	null
large intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055699
BRD-K71622214	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.48315
ZR7530	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.59299
MKN-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.18779
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0003
BRD-K00976973	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1259
RARA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.2556
abnormality of nucleobase metabolism	GWASdb SNP-Phenotype Associations	1.0	1.08891
Prostate adenocarcinoma_PRAD_TCGA-J4-A67L-01A-11R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abnormality of prenatal development or birth	GWASdb SNP-Phenotype Associations	1.0	0.38285
abnormality of circulating protein level	GWASdb SNP-Phenotype Associations	1.0	1.08891
posterior (caudal) superior temporal cortex (area 22c)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.78232
Endometrial cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.252
female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.652484
BRD-K02844551	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.43021
Decidual cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.232
Marimastat	HMDB Metabolites of Enzymes	1.0	null
gingivitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.27687
immune	GAD High Level Gene-Disease Associations	1.0	0.293278
ZMAT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.05073
CRCGN015_MCF10A.WT.HP_24H:E13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.40767
MAPKAPK5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.48949
dexamethasone_homo sapiens_gpl6244_gse20963	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
arsenic trioxide_homo sapiens_gpl201_gse48441	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
glioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064512
primary auditory cortex (core)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.855678
uterine adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.412771
BRD-K55144248	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.08155
HOXD12::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.4819
AQP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.53751
organic substance metabolic process	GO Biological Process Annotations 2015	1.0	null
Pancreatic Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-KK-A8IH-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K83994491	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.76252
Verrucous carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.061
dermal microvascular endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.246124
CENPJ	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.19296
Bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.217
glial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059338
Altretamine_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	1.0	0.0168131
artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.083381
BRD-K41116634	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.46998
CTV1DM	DepMap CRISPR Gene Dependency	1.0	2.98339
CAL-27	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Pharynx	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
BRD-K47814830	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.55305
Respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.27
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.490619
esophageal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.326432
BRD-K51520673	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.36897
tumorigenesis	GeneRIF Biological Term Annotations	1.0	null
BRD-K95798946	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.29221
PMC9174176-41467_2022_30924_MOESM6_ESM.xlsx-OC3-SYMBOL_ONECUT3	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K27374902	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.45395
Cytotrophoblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.36
BRD-K04367224	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.40708
HS944T	Achilles Cell Line Gene Essentiality Profiles	1.0	1.02215
CRCGN017_MCF10A.WT.HP_24H:O17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.02385
GSE149035_1_v_5_hepacam_human	RummaGEO Gene Perturbation Signatures	1.0	null
RIGI	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86722
BRD-K57051157	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.42587
CISD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.93094
DNAJC11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.00499
amygdaloid complex_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.00388
BRD-A99687212	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.59092
Malaria	DisGeNET Gene-Disease Associations	1.0	null
BRD-K24929039	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.37667
BRD-K50434315	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.26847
DHRS11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.02706
dependent	GeneRIF Biological Term Annotations	1.0	null
BRD-K98944347	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.70921
BRD-K32362211	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.19241
fetus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.676987
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4994-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
significant	GeneRIF Biological Term Annotations	1.0	null
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.48562
cerebellar cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.871345
skeletal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.077935
Sarcoma_SARC_TCGA-HS-A5N8-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
regulation of response to stimulus	GO Biological Process Annotations 2015	1.0	null
blast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.076339
Gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
BCAR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.49022
BRD-A17831693	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.48473
Extravillous trophoblast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.905
Oleic acid_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0347664
ZNF852	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.7823
Vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.33
HUH-6-CLONE5	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K62597218	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.64062
mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.093059
HNF4A_KD_GSE29084_694_human_HepG2 cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Dental plaque	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.888
hel299	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.15
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.904064
Liver hepatocellular carcinoma_LIHC_TCGA-YA-A8S7-01A-11R-A37K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9846
Breast Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
prostatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.319726
TOLEDO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.8336
BRD-K86073842	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.31533
Prostate cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.509
adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.290295
VAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0163
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.328262
neoplasm	GWASdb SNP-Phenotype Associations	1.0	0.108892
Invasive Cancer	DisGeNET Gene-Phenotype Associations	1.0	null
CYP27B1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.06259
MEF2A	JASPAR Predicted Transcription Factor Targets	1.0	null
KELLY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.56241
JHH6	CCLE Cell Line Gene CNV Profiles	1.0	1.67259
degenerated	GeneRIF Biological Term Annotations	1.0	null
MEWO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
abnormality of the skeletal system	GWASdb SNP-Phenotype Associations	1.0	0.072809
BRD-K87358945	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.13762
NCI-SNU-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
novobiocin-na	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.73327
ovary	GeneRIF Biological Term Annotations	1.0	null
Narcolepsy	DisGeNET Gene-Disease Associations	1.0	null
POLE2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.73077
fibroblastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.407073
PHGDH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.1751
BRD-K12469242	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.17695
orbital frontal cortex_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.64936
EWS-ERG-20517297-CADO-ES1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
stoma	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.249977
conserved	GeneRIF Biological Term Annotations	1.0	null
Prostate carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.12
CRCGN012_HEPG2_24H:H24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.31305
ZNF267	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.55288
Primary immunodeficiency disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.204
negative regulation of biological process	GO Biological Process Annotations 2015	1.0	null
u-251 mg cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.36825
BRD-K55780532	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.3231
HCC2814	CCLE Cell Line Gene CNV Profiles	1.0	1.50326
BRD-K07781811	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.37496
Sapanisertib_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0189297
external male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.176912
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A6TF-01A-52R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-A77440546	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.32899
anterior (rostral) cingulate (medial prefrontal) cortex_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.826106
artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043693
BRD-K49872883	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.04375
CRCGN017_MCF10A.WT.HP_24H:P11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.0489
striatum_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.24494
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
AMH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.54268
abnormality of thrombocytes	GWASdb SNP-Phenotype Associations	1.0	0.350059
keratinocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.321685
Squamous Cell Carcinoma Of Esophagus	DisGeNET Gene-Disease Associations	1.0	null
EZH2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.932982
BRD-K85572169	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.34561
RPS11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.14674
NCI-H510A	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Disease by infectious agent	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.746
dorsolateral prefrontal cortex_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.850061
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.489057
Vandetanib_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0158139
primary somatosensory cortex (area S1, areas 3,1,2)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.14262
Ischemic Stroke	DisGeNET Gene-Disease Associations	1.0	null
BRD-K27373956	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2826
BRD-K75679095	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.2703
Thoracic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.641
BRD-K83916197	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.57573
superfamily	GeneRIF Biological Term Annotations	1.0	null
SF268	CCLE Cell Line Gene CNV Profiles	1.0	1.61495
integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050624
TAF8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.33434
BRD-A76076412	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.68127
MWP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.508
MYBL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0057
myocardial infarction	GWASdb SNP-Disease Associations	1.0	1.24313
RBM33	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.16694
BRD-A03182941	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.53833
warrants	GeneRIF Biological Term Annotations	1.0	null
monocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.077068
mmps	GeneRIF Biological Term Annotations	1.0	null
embryonic structure	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
BRD-K67087027	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01539
BACH1	ChEA Transcription Factor Targets	1.0	null
FUOV1	CCLE Cell Line Gene CNV Profiles	1.0	1.72943
endometrial cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.872462
CAL-78	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56745
HOXB6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5652
Prostate adenocarcinoma_PRAD_TCGA-QU-A6IN-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K57096799	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.20586
nicotine_myzus persicae_gpl9470_gse18658	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Prostate Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Atherosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.124
imatinib_homo sapiens_gpl96_gds3044	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.143045
NARS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86605
human immunodeficiency virus infectious disease	GWASdb SNP-Disease Associations	1.0	1.24313
BRD-K21420222	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.24776
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.247399
BRD-K80462316	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0249
BRD-K15474464	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0866
BRD-K09875820	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.52792
Fibrinogen complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.085
K562	BioGPS Cell Line Gene Expression Profiles	1.0	1.66916
BRD-K11054415	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01345
regulation of biological process	GO Biological Process Annotations 2015	1.0	null
Myometrium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.071
abnormality of lipid metabolism	GWASdb SNP-Phenotype Associations	1.0	0.275408
KMS-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.860894
BRD-K16118844	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.97564
smooth muscle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.233731
EOMES	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3042
COV318	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38917
SLC35F5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.38626
internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.42993
NOP10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.01264
CSPG5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01293
GLUD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.95771
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A2J8-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Internal female genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
tm4sf4	GeneRIF Biological Term Annotations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-A65G-01A-21R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Endometrial Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
cerebellar cortex_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.894939
epithelial	GeneRIF Biological Term Annotations	1.0	null
Cervicovaginal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.224
nevoid basal cell carcinoma syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.490072
CAPAN2	CCLE Cell Line Gene CNV Profiles	1.0	1.63641
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-FF-A7CX-01A-12R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K28093873	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.67294
A3KAW	CCLE Cell Line Gene Expression Profiles	1.0	1.35583
Uterine adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.055
mda-mb-231 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.382508
molecular_function	GO Molecular Function Annotations 2015	1.0	null
MCM9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.34846
KM12	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K71089225	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.14414
Colon cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.228
Kidney renal papillary cell carcinoma_KIRP_TCGA-G7-A8LB-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
small intestine epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.191751
Skin fibroblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.638
BRD-K28165749	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0699
RNF149	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.5899
keratocyst	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.555671
Diffuse large B-cell lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.599
Endometrial stromal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.621
inferolateral temporal cortex (area TEv, area 20)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.017
BRD-K51050934	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.20042
beta-catenin-TCF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.091
496100489_HIP_possible Alzheimer's disease_no TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.23505
discs	GeneRIF Biological Term Annotations	1.0	null
NUGC-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.925474
placenta	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
BRD-K40241022	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.57258
BRD-K28522188	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.574
BRD-K77950699	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.56808
HCC70	CCLE Cell Line Gene CNV Profiles	-1.0	-1.78369
BRD-K12824862	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00433
posteroventral (inferior) parietal cortex_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.27587
SFMBT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.1161
posterior (caudal) superior temporal cortex (area 22c)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.03663
posteroventral (inferior) parietal cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.1953
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
496100623_PCx_no dementia_TBI_86_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.91451
Ulcer of lower limbs	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.188
DLL3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.37238
type	GeneRIF Biological Term Annotations	1.0	null
HCC2270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.37801
spinal cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056829
stomach	HPA Tissue Protein Expression Profiles	1.0	0.98309
BRD-K27719710	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10591
collagen	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-124-3p	MiRTarBase microRNA Targets	1.0	null
vascular endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066892
MDAMB436	CCLE Cell Line Gene Expression Profiles	-1.0	-1.45492
Sarcoma_SARC_TCGA-K1-A42X-01A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-7920-01A-11R-2204-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K43775480	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.77358
Female reproductive organ benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.226
disease of anatomical entity	GWASdb SNP-Disease Associations	1.0	0.040007
SMZ1	DepMap CRISPR Gene Dependency	1.0	2.57838
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17249
metalloendopeptidase activity	GO Molecular Function Annotations 2015	1.0	null
Odontoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.023
Female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.703
Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A71B-01A-12R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Intestinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.421
NDEL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.78805
tissue	GeneRIF Biological Term Annotations	1.0	null
lymph node	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.336704
Pancreatic adenocarcinoma_PAAD_TCGA-3A-A9IO-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K51133104	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.66252
TIMM29	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.48042
negative regulation of response to wounding	GO Biological Process Annotations 2015	1.0	null
Entecavir (monohydrate)_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0165839
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14894
OR2B6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.84863
areas	GeneRIF Biological Term Annotations	1.0	null
ZNF789	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.42381
ECC12	CCLE Cell Line Gene Expression Profiles	1.0	2.27634
Female reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
leaf lamina	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.09028
HEC108	CCLE Cell Line Gene Expression Profiles	-1.0	-1.64972
B4GALT3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35444
extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.449501
ARMC7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.67096
esophageal squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.721166
CRCGN015_MCF10A.WT.HP_24H:F08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.01007
central	GeneRIF Biological Term Annotations	1.0	null
BRD-K46703028	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.81285
polycystic	GeneRIF Biological Term Annotations	1.0	null
Urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
timp2	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.99188
Ishikawa cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.029
CRCGN014_HEPG2_24H:F03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	9.17307
kawasaki disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.174354
COGN305	DepMap CRISPR Gene Dependency	1.0	4.59971
CRCGN008_HEPG2_24H:O03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.03005
BRD-K93836438	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.6056
BRD-K20278539	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.48445
NKX2-4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3588
RAB11FIP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10453
OAW42	Achilles Cell Line Gene Essentiality Profiles	1.0	1.55195
retromer, cargo-selective complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.9
BRD-K58113140	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.72628
dorsolateral prefrontal cortex_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.93343
NID2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2912
MIIP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.13437
phenotypic abnormality	GWASdb SNP-Phenotype Associations	1.0	0.085079
RT11284	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35631
Belzutifan_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0210885
CRCGN008_HEPG2_24H:O06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.2409
cleave	GeneRIF Biological Term Annotations	1.0	null
MAF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8751
deep	GeneRIF Biological Term Annotations	1.0	null
lymph node disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.098879
cation binding	GO Molecular Function Annotations 2015	1.0	null
abnormality of the liver	GWASdb SNP-Phenotype Associations	1.0	0.157522
Thoracic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.625
BRD-K01100412	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.90281
BRD-K67522096	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.21215
cerebellar cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.70466
786-0	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Tumor Cell Invasion	DisGeNET Gene-Phenotype Associations	1.0	null
NDUFA2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.04951
BJAB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57533
MEL270	DepMap CRISPR Gene Dependency	1.0	5.98015
collagen catabolic process	GO Biological Process Annotations 2015	1.0	null
Basement membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.027
NCI-H358	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0003
CRCGN008_HEPG2_24H:I12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.15765
PNT2-C2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.041
overexpression	GeneRIF Biological Term Annotations	1.0	null
Verrucous Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03646
Bronchus	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
BRD-K85066228	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.08607
HUG1N	CCLE Cell Line Gene CNV Profiles	-1.0	-2.254
HSF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.8961
RRP36	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12116
cellular_component	GO Cellular Component Annotations 2015	1.0	null
mononuclear cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068028
BEN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23547
BRD-K35936801	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.77703
BRD-K52735829	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.67093
BRD-A95683194	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.13491
nasopharynx	HPA Tissue Protein Expression Profiles	1.0	0.98309
BRD-K95735693	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.05414
CTTNBP2NL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.0107
hypocotyl	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05861
Smoking Behaviors	DisGeNET Gene-Phenotype Associations	1.0	null
ERF::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.259
site	GeneRIF Biological Term Annotations	1.0	null
PMC6292558__F2	PFOCR Pathway Figure Associations 2023	1.0	null
FNTA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.32731
CAS1	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.02662
part	GeneRIF Biological Term Annotations	1.0	null
PATU8988S	DepMap CRISPR Gene Dependency	1.0	2.78176
BRD-K50851442	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.92373
Squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.436
PMC5515741-medi-96-e7264-s001.xlsx-up-regulated_DEGs-SIM2_SIM2	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K02361314	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.6894
foreskin fibroblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.613764
BRD-K83966071	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.61281
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0003
MMP9	Pathway Commons Protein-Protein Interactions	1.0	null
Chondrosarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.04
Adolescent Idiopathic Scoliosis	DisGeNET Gene-Disease Associations	1.0	null
HT144SKINFV2	DepMap CRISPR Gene Dependency	1.0	2.10703
MKN28	GDSC Cell Line Gene Expression Profiles	-1.0	-1.61753
BRD-K13798725	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.30773
POU3F2-20337985-501MEL-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
PANC0203	CCLE Cell Line Gene CNV Profiles	1.0	2.1567
Cyclosporin A_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0231717
NCIH716	DepMap CRISPR Gene Dependency	1.0	3.14026
carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.33046
MYOD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.5877
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.951254
zinc ion binding	GO Molecular Function Annotations 2015	1.0	null
BRD-K36643302	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.48126
UQCR10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66002
local	GeneRIF Biological Term Annotations	1.0	null
event	GeneRIF Biological Term Annotations	1.0	null
decidua	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.264696
increased blood urea nitrogen (bun)	GWASdb SNP-Phenotype Associations	1.0	1.08891
Pancreatic adenocarcinoma_PAAD_TCGA-HV-A5A6-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Decidua	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.329
GSE228106_0_v_5_paclitaxel_human	RummaGEO Drug Perturbation Signatures	1.0	null
CHMP5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61397
ZNF652	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6087
HSC3	CCLE Cell Line Gene CNV Profiles	1.0	1.33958
vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041788
morphological	GeneRIF Biological Term Annotations	1.0	null
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9805
lower	GeneRIF Biological Term Annotations	1.0	null
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
Adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.253
cerebellar cortex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.05798
cannot	GeneRIF Biological Term Annotations	1.0	null
CHP212	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6388
NCIH2081	CCLE Cell Line Gene Expression Profiles	1.0	2.65491
JIMT-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.19962
SJSA1	CCLE Cell Line Gene CNV Profiles	1.0	1.63756
out	GeneRIF Biological Term Annotations	1.0	null
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.71384
Periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.215
Dentin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.021
FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5437
PMC11384093-mmc1.xlsx-886-drug_target-VDR_VDR	Rummagene Transcription Factor Associations 2026	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-5C-A9VG-01A-11R-A37K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
seed	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056689
RT11284	CCLE Cell Line Gene Expression Profiles	-1.0	-1.49461
immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040559
BRD-K45986774	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.66372
Hepatobiliary disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.059
PYGM	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.21599
adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.132342
abnormal glucose homeostasis	GWASdb SNP-Phenotype Associations	1.0	0.233568
TMEM102	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.96744
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A1EB-11A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
multiple	GeneRIF Biological Term Annotations	1.0	null
TestisIntersitial	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.835141
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07549
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.928508
CBP-21632823-H3396-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Small saphenous vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.646
GM97	BioGPS Cell Line Gene Expression Profiles	1.0	1.41323
JURLMK1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47781
glandular epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.934911
Endometrial carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.51
CRCGN009_HEPG2_24H:O03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.80043
coronary artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.188732
BRD-K39491844	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.50941
Prostate adenocarcinoma_PRAD_TCGA-XA-A8JR-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K13122423	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.19738
CRCGN009_HEPG2_24H:G15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.39419
TWIST1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.981
primary motor cortex (area M1, area 4)_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.14911
BRD-K30727702	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.16459
migration	GeneRIF Biological Term Annotations	1.0	null
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
KCNN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.92667
MED6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42717
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07301
Vermiform appendix	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
TT	GDSC Cell Line Gene Expression Profiles	1.0	2.22035
hsa-miR-4658	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
Ovarian Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
ventrolateral prefrontal cortex_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.31186
BRD-K36697652	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.53971
coordination	GeneRIF Biological Term Annotations	1.0	null
BRD-K48069820	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.23788
BRD-K11893906	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.53935
endometrial cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.76364
HT-1080 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.062
pre-malignant neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.541
BRD-K48338059	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.12477
Aggressive periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.446
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.1125
T47D	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.646914
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A706-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K50712773	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.58522
TFAP4::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.0849
cerebellar cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.86575
Endometriosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.586
IST1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.66054
Arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.117
hippocampus	HPA Tissue Protein Expression Profiles	-1.0	-1.2583
ishikawa cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.316951
pancreatic adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.138589
BRD-K88179337	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.18281
Mewo	GDSC Cell Line Gene Expression Profiles	1.0	1.76154
SDHAF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.78443
MLH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95052
leaf epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.103106
BRD-A02214146	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.15968
NCI-H2595	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.850131
BEN	GDSC Cell Line Gene Expression Profiles	1.0	1.45486
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851979
BRD-A42579861	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.09411
BRD-K72071403	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.08349
Mouth	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
pancreatic	GeneRIF Biological Term Annotations	1.0	null
NCIH1355	CCLE Cell Line Gene CNV Profiles	-1.0	-1.87338
BRD-K21935128	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.91726
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1525
PMC8988201-EMMM-14-e14990-s008.xlsx-Sheet1-Dataset_EV6_Wnt_and_Hh_pathway_associated_genes_assessed_for_differential_expression_after_GPR56_KD_AR	Rummagene Transcription Factor Associations 2026	1.0	null
16489042-SuppTable1b	GeneSigDB Published Gene Signatures	1.0	null
NCIN87	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42008
Prostate adenocarcinoma_PRAD_TCGA-HC-7752-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Sarcoma_SARC_TCGA-KD-A5QU-01A-11R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.369
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.887618
SW954	DepMap CRISPR Gene Dependency	1.0	6.76797
single-multicellular organism process	GO Biological Process Annotations 2015	1.0	null
chr11_4907050_C_T_b38	GTEx eQTL 2025	1.0	4.48424
primary auditory cortex (core)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.28785
BRD-K66807670	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.81477
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.95
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1434
BRD-K56336567	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10557
Gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
BRD-K53354260	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.09127
RNASE3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.33372
Internal male genital organ	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
hematopoietic system disease	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	1.59286
dorsolateral prefrontal cortex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.7472
chorionic villus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.214954
BRD-K48436333	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.50199
blastomere	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.184828
BRD-K24864035	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02202
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.967
negative regulation of defense response	GO Biological Process Annotations 2023	1.0	null
extracellular matrix	GO Cellular Component Annotations 2015	1.0	null
remodeling	GeneRIF Biological Term Annotations	1.0	null
BRD-K70072942	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10219
regulation of defense response	GO Biological Process Annotations 2015	1.0	null
hemolytic anemia	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	1.59286
FOS_MCF 10A_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.357058
Posterior polymorphous corneal dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.011
DB	CCLE Cell Line Gene Expression Profiles	1.0	1.4729
ESR1	JASPAR Predicted Transcription Factor Targets	1.0	null
BRD-K34761198	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.24309
stroma	GeneRIF Biological Term Annotations	1.0	null
BRD-K55884477	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0408
NCI-H1092	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Serum Hdl Cholesterol Measurement	DisGeNET Gene-Phenotype Associations	1.0	null
BRD-A03997826	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10738
POU5F1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2553
DDX27	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.49676
abnormality of the upper urinary tract	GWASdb SNP-Phenotype Associations	1.0	0.181043
posteroventral (inferior) parietal cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.85513
relationship	GeneRIF Biological Term Annotations	1.0	null
Inflammation	CTD Gene-Disease Associations	1.0	1.04389
BRD-K77892726	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.63644
Lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.173
ACIN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.00988
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6802
KYSE-30 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.576
HT29	Achilles Cell Line Gene Essentiality Profiles	-1.0	-2.45552
BRD-K43186783	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.14879
Vagina	GTEx Tissue Gene Expression Profiles 2023	1.0	4.78486
hydrolase activity	GO Molecular Function Annotations 2015	1.0	null
Lung adenocarcinoma_LUAD_TCGA-55-5899-01A-11R-1628-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
amyloidosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.127896
metalloproteinase	GeneRIF Biological Term Annotations	1.0	null
ZSCAN16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.2603
BRD-K20016759	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0497
HSF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.86488
prommp9	GeneRIF Biological Term Annotations	1.0	null
BRD-K79712504	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.07839
CAMK2N2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.59562
immune system disease	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	1.59286
DACH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.04828
BRD-K25917968	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.18708
intestinal atresia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.836017
Gingiva	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.209
Lung squamous cell carcinoma_LUSC_TCGA-37-5819-01A-01R-1635-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MM1S	COSMIC Cell Line Gene Mutation Profiles	1.0	null
TBP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.243
JEKO-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
TYK-NU	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Kidney Chromophobe_KICH_TCGA-KM-8442-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hoxa10mediated	GeneRIF Biological Term Annotations	1.0	null
BRD-K15879529	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.16225
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.6323
CNPY2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.50922
Prostate adenocarcinoma_PRAD_TCGA-YL-A8SA-01A-21R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.152
Stomach cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.241
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.09651
dorsolateral prefrontal cortex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.35511
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.956859
CRCGN015_HEPG2_48H:G19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.65895
negative regulation of defense response	GO Biological Process Annotations 2015	1.0	null
PPP1R35	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82052
PTGES3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.83307
skin	GeneRIF Biological Term Annotations	1.0	null
posteroventral (inferior) parietal cortex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.0113
excretory gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
CRCGN015_MCF10A_48H:P04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.62855
reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
BRD-K48519079	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.0635
MCC26	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Gingival fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.022
shallow	GeneRIF Biological Term Annotations	1.0	null
BRD-A05956997	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.15268
BRD-A14331394	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2322
membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043101
BRD-K21648400	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.99973
BRD-K77706833	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.53334
GRPR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.3571
CRCGN016_MCF10A.TP53.M_24H:P12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.24325
microvascular endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.098731
regulation of response to external stimulus	GO Biological Process Annotations 2015	1.0	null
BRD-K86268010	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.0458
BRD-K20039572	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03008
progdf15	GeneRIF Biological Term Annotations	1.0	null
respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.179239
posterior (caudal) superior temporal cortex (area 22c)_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.96975
PMC3879300-pone.0084292.s002.xlsx-SPD_dataset-Gene_symbol_HOXD13	Rummagene Transcription Factor Associations 2026	1.0	null
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.720865
BRD-K31377965	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00774
negative regulation of response to external stimulus	GO Biological Process Annotations 2023	1.0	null
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.51453
ht-1080 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.458373
HARS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.20263
BRD-K58268854	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04272
metastasis	GeneRIF Biological Term Annotations	1.0	null
NR1H2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.49554
ESCO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.33112
KYSE30	Achilles Cell Line Gene Essentiality Profiles	-1.0	-2.01197
H1-0	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.42474
prognosis	GeneRIF Biological Term Annotations	1.0	null
BRD-K18402224	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.88666
Cytotrophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.115
BRD-K10178088	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.48294
BRD-K59130783	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.78909
cerebral amyloid angiopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.344207
BRD-A27844016	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.31284
UBLCP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.00212
ion binding	GO Molecular Function Annotations 2015	1.0	null
polycystic ovary syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.210253
ZSCAN22	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.35653
BRD-K56563145	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.2205
NCCSTCK140	CCLE Cell Line Gene Expression Profiles	-1.0	-1.65673
BRD-K42034238	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00763
PYGO2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.42675
NPIPB4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.60409
PPIE	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.18375
BRD-K01639343	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.45403
LIVF001-016	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.02952
specificity	GeneRIF Biological Term Annotations	1.0	null
Ovarian cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.273
HMGCS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.81585
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.932982
FOXF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.01018
BRD-K94347944	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.32509
glial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065379
BRD-K54362440	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.74828
BRD-A57762296	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15724
NCIH1092	CCLE Cell Line Gene Expression Profiles	1.0	1.75678
abnormality of purine metabolism	GWASdb SNP-Phenotype Associations	1.0	1.08891
Respiratory system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
studies	GeneRIF Biological Term Annotations	1.0	null
BFTC-909	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.99188
GSE128730_4_v_5_neratinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
pancreatic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.085323
BRD-A22773530	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.56988
hs-68 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.667215
EN	COSMIC Cell Line Gene Mutation Profiles	1.0	null
abnormality of leukocytes	GWASdb SNP-Phenotype Associations	1.0	0.144786
laminin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.469203
intermediate	GeneRIF Biological Term Annotations	1.0	null
bf34	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.009
CRCGN012_HEPG2_24H:M14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.09545
fetal membrane	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.21673
BRD-K96745500	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.24388
Male reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.508
integrin alphav-beta6 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.755437
Allopurinol_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0123969
BRD-K99530482	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.48494
posterior (caudal) superior temporal cortex (area 22c)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.830635
SHROOM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.45969
T24	BioGPS Cell Line Gene Expression Profiles	1.0	1.03478
independent	GeneRIF Biological Term Annotations	1.0	null
ovary	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073179
BRD-K39965317	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.66417
BRD-K51153795	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.42897
BRD-K01749472	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.8712
BRF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.31789
KMS-26	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07301
BRD-K98161738	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.23249
organ	GeneRIF Biological Term Annotations	1.0	null
FOXP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3726
ENSG00000230707	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.36834
BRD-K93260425	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02016
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.776
Ischemic colitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.379
DIFI	DepMap CRISPR Gene Dependency	1.0	2.6114
fibronectin	GeneRIF Biological Term Annotations	1.0	null
BRD-K24532125	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.1136
CRCGN016_MCF10A.TP53.M_24H:P16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.03472
controlled	GeneRIF Biological Term Annotations	1.0	null
BI-78D3_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	1.0	0.0204935
endopeptidase activity	GO Molecular Function Annotations 2023	1.0	null
BRD-K39224209	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.10654
BRD-K25842662	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.68152
Bladder Urothelial Carcinoma_BLCA_TCGA-K4-A3WU-01B-11R-A23N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HS-68 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.864
epidermal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.400628
FOXS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8342
BRD-K53548389	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.97347
SKMEL28	CCLE Cell Line Gene CNV Profiles	1.0	1.37426
BRD-K25177502	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.26624
immunoreactivity	GeneRIF Biological Term Annotations	1.0	null
BRD-K16357911	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.13856
BRD-K92891227	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.80248
Connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.292
organism form	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
BRD-K58955712	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.46367
BRD-K94247332	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.33106
LEMD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.02702
GSE182179_2_v_1_kdsr_human	RummaGEO Gene Perturbation Signatures	-1.0	null
blood vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.249977
PMC12276197-18_2025_5784_MOESM1_ESM.xlsx-Sup_Table_10-Supplementary_Table_10_ERK_targets_from_Unal_et_al_2017_mapped_to_human_orthologous_genes_from_KD_and_SC_hypernetworks_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Uterine Hemorrhage	DisGeNET Gene-Phenotype Associations	1.0	null
GCC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.06079
IKZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1961
BRD-K42150052	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.01028
Glioma	DisGeNET Gene-Disease Associations	1.0	null
SKNMC	DepMap CRISPR Gene Dependency	1.0	3.53338
UM-SCC-38 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.449
BRD-A09988375	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.92435
MITF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9829
BRD-K85162396	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.32898
HCC70	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.88746
Diabetic Nephropathies	HuGE Navigator Gene-Phenotype Associations	1.0	null
BRD-K28698418	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.12552
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.30951
Cutaneous fibrous histiocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.116
further	GeneRIF Biological Term Annotations	1.0	null
BRD-K44916315	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.58624
FHIP2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86227
FOS	ENCODE Transcription Factor Targets	1.0	null
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00494
BRD-K72314068	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.3196
mmp	GeneRIF Biological Term Annotations	1.0	null
BRD-K21467089	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.60858
CCDC14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.03668
abnormality of the abdomen	GWASdb SNP-Phenotype Associations	1.0	0.071613
GSE149035_3_v_5_hepacam_human	RummaGEO Gene Perturbation Signatures	1.0	null
BRD-K67508052	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.76292
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052001
BRD-K93900188	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.79434
PMC7037626__F1	PFOCR Pathway Figure Associations 2024	1.0	null
CRCGN011_HEPG2_24H:O06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.9412
molecular	GeneRIF Biological Term Annotations	1.0	null
catalytic activity	GO Molecular Function Annotations 2015	1.0	null
SU.86.86	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07549
ITCH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.42677
abnormal platelet count	GWASdb SNP-Phenotype Associations	1.0	1.08891
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.666
posterior (caudal) superior temporal cortex (area 22c)_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.24397
mt3	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.38
Chondrosarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.949
alpha 1-antitrypsin deficiency	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.389281
abnormality of bone mineral density	GWASdb SNP-Phenotype Associations	1.0	1.08891
BRD-K75610411	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	5.4837
BRD-K34815008	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.34643
bxpc-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.214202
JUND	ENCODE Transcription Factor Targets	1.0	null
SKBR3	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.08718
urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
HCC56	CCLE Cell Line Gene CNV Profiles	1.0	1.67484
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.085371
H357	DepMap CRISPR Gene Dependency	1.0	2.20162
TBX20	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2782
CHP-212	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45076
ZNF891	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.0032
BRD-K74512976	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.91217
STAT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.2375
NCIH889	CCLE Cell Line Gene Expression Profiles	1.0	3.40797
intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.359289
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.0928
BRD-K74482064	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.39178
hippocampus (hippocampal formation)_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.17851
hypertension	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.063068
menstrual	GeneRIF Biological Term Annotations	1.0	null
CRCGN016_MCF10A.WT.HP_24H:L19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.11239
BRD-K30283890	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.08207
PMC7435699-mmc5.xls-Gene_lists-MITF_ChIP_MITF	Rummagene Transcription Factor Associations 2026	1.0	null
LN464	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.51232
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.304279
ARHGEF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.30691
benzamil-2200	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
ERI2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.60162
BRD-K73540839	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.90414
unique	GeneRIF Biological Term Annotations	1.0	null
SF268	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.83799
extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.950189
FOXK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1089
BRD-K90255725	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.57133
SW684	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GTF2IRD2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.92205
SPCS3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.26936
monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044812
serve	GeneRIF Biological Term Annotations	1.0	null
BRD-A57353172	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00817
UOK101	Achilles Cell Line Gene Essentiality Profiles	1.0	1.59688
UMRC6	CCLE Cell Line Gene Expression Profiles	1.0	1.39811
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068046
Digitoxin_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0190127
Uterine endometrium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.027
hematological neoplasm	GWASdb SNP-Phenotype Associations	1.0	0.324422
BRD-K58382884	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.28001
BRD-K52225720	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.61465
TAL1::TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6364
BRIX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.06304
heart	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058512
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A1EG-01A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
integrin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.084426
Lung non-small cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.129
kidney	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
SAP30_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K52101275	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.12285
TNIP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.58718
cytotrophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.61578
SLC29A3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.44399
rectum	HPA Tissue Protein Expression Profiles	1.0	0.98309
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40552
BRD-K39773004	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.24025
CENPK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.09777
POLR2A	ENCODE Transcription Factor Targets	1.0	null
acquired metabolic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.049433
GSE131649_2_v_8_hemin_human	RummaGEO Drug Perturbation Signatures	1.0	null
KCNA6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10419
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07243
DEDD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.15128
different	GeneRIF Biological Term Annotations	1.0	null
EHF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.5929
HNF4A_KD_GDS4798_550_human_HepG2	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
vascular smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.179462
In situ carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.538
their	GeneRIF Biological Term Annotations	1.0	null
BRD-K50685439	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.06706
glia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059111
BRD-K42899345	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.46511
Theca folliculi	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.829
hippocampus (hippocampal formation)_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.38868
skin cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.222822
BRD-K35808731	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.81016
DMS454	CCLE Cell Line Gene CNV Profiles	1.0	1.6904
Lung adenocarcinoma_LUAD_TCGA-55-6969-01A-11R-1949-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
negative regulation of defense response	GO Biological Process Annotations 2025	1.0	null
Abortion, Tubal	DisGeNET Gene-Phenotype Associations	1.0	null
KLM1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.52196
cervical mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.260945
implants	GeneRIF Biological Term Annotations	1.0	null
Integumentary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.14
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.239799
NCI-H2810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.892585
Mozavaptan_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0275544
Squamous Cell Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
CRCGN015_MCF10A_48H:F02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.5445
BRD-K53050301	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.17938
placenta	GeneRIF Biological Term Annotations	1.0	null
BRD-K32699895	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.84063
contributes	GeneRIF Biological Term Annotations	1.0	null
Lung adenocarcinoma_LUAD_TCGA-NJ-A55R-01A-11R-A262-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.864977
metallopeptidase activity	GO Molecular Function Annotations 2015	1.0	null
Intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.46
anterior (rostral) cingulate (medial prefrontal) cortex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.59143
Immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.257
promoter	GeneRIF Biological Term Annotations	1.0	null
DDX5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.01455
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.72366
MCC13	COSMIC Cell Line Gene Mutation Profiles	1.0	null
tooth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.158266
NCI-H1703	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.87001
BRD-K13445266	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.35368
cerebellar cortex_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.908233
Colorectum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
seems	GeneRIF Biological Term Annotations	1.0	null
15902281-TableS1b	GeneSigDB Published Gene Signatures	1.0	null
OVKATE	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33074
Fibroblastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.095
Colorectal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.412
BRD-A99344113	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.4392
SF539	BioGPS Cell Line Gene Expression Profiles	-1.0	-0.832093
18537972-TableS3	GeneSigDB Published Gene Signatures	1.0	null
Carcinogenesis	DisGeNET Gene-Phenotype Associations	1.0	null
CRCGN017_MCF10A.WT.HP_24H:P03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.12045
GSE130956_0_v_3_icaritin_human	RummaGEO Drug Perturbation Signatures	1.0	null
periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.239799
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7281
SIT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.95897
PANC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.61888
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.9557
Uterine fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.386
RPL17	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.46137
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.173543
blastula	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.547724
smooth	GeneRIF Biological Term Annotations	1.0	null
NDUFS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.19296
POU2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9311
LEPROTL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.04286
NCIH2227	CCLE Cell Line Gene CNV Profiles	1.0	1.87267
SKNO1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45818
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.11818
primary visual cortex (striate cortex, area V1/17)_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.994093
NCIH2029	CCLE Cell Line Gene Expression Profiles	1.0	1.59242
Sarcoma_SARC_TCGA-N1-A6IA-01A-12R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cervical mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.358
in situ carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.40904
hematopoietic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.076914
BRD-K44007425	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.21837
GSE135439_0_v_1_pax5_human	RummaGEO Gene Perturbation Signatures	1.0	null
BRD-K46824282	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.3015
sccs	GeneRIF Biological Term Annotations	1.0	null
primary motor cortex (area M1, area 4)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.54195
Coronary Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
uterine cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.218398
collagen catabolic process	GO Biological Process Annotations 2025	1.0	null
basal lamina	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.297342
cardiovascular	GAD High Level Gene-Disease Associations	1.0	0.293278
GSE221577_1_v_5_pik3r1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-ZP-A9D2-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Embryonic structure	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
proteolysis	GO Biological Process Annotations 2023	1.0	null
496100359_PCx_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.95543
contribute	GeneRIF Biological Term Annotations	1.0	null
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44639
external encapsulating structure organization	GO Biological Process Annotations 2023	1.0	null
MDA-MB-231-Luc2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.164
Carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.835
Uterine wall	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.702
plasma protein metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.194232
pterostilbene	CTD Gene-Chemical Interactions	1.0	null
KMS27	CCLE Cell Line Gene CNV Profiles	1.0	1.33176
orbital frontal cortex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.21909
Platelet dense tubular network	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.071
cardiovascular	GeneRIF Biological Term Annotations	1.0	null
BRD-K35852282	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.18464
Large intestine	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
BRD-K76176797	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.24466
NACA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.42651
Gingival overgrowth	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.425
Kidney	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.085595
cervicovaginal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.340388
CAL78	CCLE Cell Line Gene CNV Profiles	1.0	1.70895
BRD-K62085719	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.20142
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66169
BRD-K16560691	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.68434
C6orf141	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.27218
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.99188
oaw42	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.889
Down Syndrome_Brain_GSE5390	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-2.35566
Male reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.493
CRCGN013_HEPG2_24H:K01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.24165
extracellular matrix part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.706598
BRD-K55479099	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.74834
SISO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
hippocampus (hippocampal formation)_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.37271
suggesting	GeneRIF Biological Term Annotations	1.0	null
intervertebral disc	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.180256
Urogenital system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
RT4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28781
ulcerative colitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.166768
facilitating	GeneRIF Biological Term Annotations	1.0	null
KARPAS299	CCLE Cell Line Gene Expression Profiles	-1.0	-2.24174
BRD-K02066524	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.13694
Nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.029
origin	GeneRIF Biological Term Annotations	1.0	null
BRD-K33122655	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.58404
BRD-K74259627	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.3036
Viscus	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
BRD-K28165728	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.32735
PROX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.651
BRD-K49530286	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.53028
DU4475	DepMap CRISPR Gene Dependency	1.0	3.56478
BRD-K06399794	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.61383
BRD-K39624517	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.47739
HCC33	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.963379
Integrin alpha6-beta1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.645
BRD-K88527653	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.4187
spinal column	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.101636
thorax	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.408972
hippocampus (hippocampal formation)_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.900267
FOXD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7
metalloproteinase26	GeneRIF Biological Term Annotations	1.0	null
metalloendopeptidase activity	GO Molecular Function Annotations 2023	1.0	null
BRD-K53802078	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.84263
PROSER2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.15998
Matrix Metalloproteinases(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
Azoxymethane	CTD Gene-Chemical Interactions	1.0	null
markers	GeneRIF Biological Term Annotations	1.0	null
KAT7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.44703
abnormal hemoglobin	GWASdb SNP-Phenotype Associations	1.0	1.08891
ventrolateral prefrontal cortex_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.24802
BRD-K82145108	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.10442
MPHOSPH8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.87557
tongue	GeneRIF Biological Term Annotations	1.0	null
gdf15	GeneRIF Biological Term Annotations	1.0	null
Rectum adenocarcinoma_READ_TCGA-DT-5265-01A-21R-1830-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K00620786	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.51076
BRD-K99100679	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.84186
19933690-TableS1	GeneSigDB Published Gene Signatures	1.0	null
Alimentary canal	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
levonorgestrel	GeneRIF Biological Term Annotations	1.0	null
BRD-K85546819	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.62929
Wound fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.57
BRD-K80424876	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.91662
CAL-120	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Kidney Chromophobe_KICH_TCGA-KN-8423-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JHUEM7	DepMap CRISPR Gene Dependency	1.0	2.28859
Uterine endometrial cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.798
bewo cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.262986
uterine cervix	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.091698
Prostatitis	DisGeNET Gene-Disease Associations	1.0	null
connective	GeneRIF Biological Term Annotations	1.0	null
CardiacMyocytes	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.0516
mmp9	GeneRIF Biological Term Annotations	1.0	null
USF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2029
Autoimmune disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.215
merkel	GeneRIF Biological Term Annotations	1.0	null
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07664
BRD-K85775326	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.68415
CEP350	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95702
seedling	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058008
anemia	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	1.59286
D283MED	CCLE Cell Line Gene CNV Profiles	-1.0	-1.82805
SW-1353 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.821
C22orf15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.7588
LIM1215	COSMIC Cell Line Gene Mutation Profiles	1.0	null
DorsalRootGanglion	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.55362
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5044
CRCGN011_HEPG2_24H:C24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.64525
CRCGN015_MCF10A_48H:K10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.30674
RAN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.43436
MOLT4	BioGPS Cell Line Gene Expression Profiles	1.0	2.10352
PMC8046804-41467_2021_22478_MOESM11_ESM.xlsx-Del_AA-TCGA-Unnamed_25_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.391553
CRCGN009_HEPG2_24H:O02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.01886
JEG-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.229
Viscus	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
Villous cytotrophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.746
oe-21 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.03522
BRD-K21356734	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.43253
PA-TU-8902	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.99188
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.678543
extracellular matrix	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
pancreatic cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.088437
BRD-K35308744	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.62059
AN3-CA	COSMIC Cell Line Gene Mutation Profiles	1.0	null
analyses	GeneRIF Biological Term Annotations	1.0	null
esophageal squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.666402
proteinaceous extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.710136
BACH1-22875853-HELA-AND-SCP4-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Abortion, Spontaneous	CTD Gene-Disease Associations	1.0	2.88009
BRD-K81439435	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.44799
GlobusPallidus	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.16315
primary visual cortex (striate cortex, area V1/17)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.847912
AZD-7648_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0334194
Lonafarnib_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0131192
hsa-miR-520f	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
marked	GeneRIF Biological Term Annotations	1.0	null
LUDLU1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.53584
BRD-K98890753	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.58848
BRD-K62533881	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.82886
BRD-K95591629	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	5.21896
JIMT1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.12528
Kidney Chromophobe_KICH_TCGA-KO-8409-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mediodorsal nucleus of thalamus_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.983674
EXD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.69671
member	GeneRIF Biological Term Annotations	1.0	null
CTCF-21964334-BJAB-B-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K49461735	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.50519
MKN1	GDSC Cell Line Gene Expression Profiles	-1.0	-2.32898
macromolecule metabolic process	GO Biological Process Annotations 2015	1.0	null
Sarcoma_SARC_TCGA-K1-A42X-02A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
U251	GDSC Cell Line Gene Expression Profiles	-1.0	-1.42264
BRD-K32965188	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.53993
skin fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.195504
BRD-K92524632	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.56443
marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081725
inflammatory bowel disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.322637
BRD-K91011325	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.11021
HNF1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.1886
COLO205	DepMap CRISPR Gene Dependency	1.0	6.28316
neutrophil	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.312595
hsa-miR-3158-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
merkel cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.390769
abnormality of cellular immune system	GWASdb SNP-Phenotype Associations	1.0	0.144786
NR2C2AP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.19271
UMC-11	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-A7NN-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-AK-3433-01A-02R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
pronephros	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.283191
rectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06116
Male reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
High-Grade Prostatic Intraepithelial Neoplasia	DisGeNET Gene-Disease Associations	1.0	null
lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071971
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
Urinary system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
aorta	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.151342
BRD-A13082766	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.05645
observed	GeneRIF Biological Term Annotations	1.0	null
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.99188
Reproductive organ benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.219
HSF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.2923
BRD-K16885048	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.16339
BRD-K41774018	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.33634
BRD-K76677554	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.59226
ETV2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8621
inferolateral temporal cortex (area TEv, area 20)_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.03923
MDAMB361	CCLE Cell Line Gene CNV Profiles	-1.0	-2.24546
BRD-K38955287	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.52654
BRD-K79334072	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22301
DPRX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10246
BRD-A10417568	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.3016
negative regulation of response to external stimulus	GO Biological Process Annotations 2015	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-KK-A59X-01A-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K01266518	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.2836
Cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.313
Neratinib (maleate)_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0233731
uterine wall	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.515317
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.449886
chorionic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.643263
LRRK2_mutant_32_GDS4400	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	1.96972
TAF1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.46933
BRD-K93126086	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.12934
BHLHE23	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.40133
BRD-K43341819	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22234
normocytic anemia	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	1.59286
LARP4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.27049
Bonemarrow	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.45865
lung	GeneRIF Biological Term Annotations	1.0	null
BRD-K43901257	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.81953
ZNF22	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.49918
Annulus fibrosus disci intervertebralis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.894
BRD-K96382853	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.36984
CHAGO-K-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K33891642	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.89458
CRCGN015_MCF10A_48H:C24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.02342
KMS20	DepMap CRISPR Gene Dependency	1.0	4.26381
ELK1::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5146
Gall bladder	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Small intestine	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Chorion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.071
internal female genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
peptidase activity	GO Molecular Function Annotations 2015	1.0	null
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06682
male reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.407545
BRD-K16911140	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.78206
GM1600	BioGPS Cell Line Gene Expression Profiles	1.0	0.941607
KINGS1	DepMap CRISPR Gene Dependency	1.0	2.228
muscle	GeneRIF Biological Term Annotations	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-7055-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HPAC	Achilles Cell Line Gene Essentiality Profiles	1.0	1.00385
Ductal carcinoma in situ	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.578
prostate	GTEx Tissue Gene Expression Profiles	1.0	1.26056
BRD-K24396733	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.47103
AU565	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.73378
DMS454	CCLE Cell Line Gene Expression Profiles	1.0	2.04693
negative regulation of response to external stimulus	GO Biological Process Annotations 2025	1.0	null
lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.318999
Enamel organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.745
DMS53	CCLE Cell Line Gene Expression Profiles	1.0	1.63675
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.934107
External encapsulating structure	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
HS695T	CCLE Cell Line Gene Expression Profiles	-1.0	-1.49983
MCF-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28719
methyl-salicylate	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.9887
MSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.4006
BRD-K49029187	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.65656
BRD-K32118188	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01581
SNU13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82617
BRD-K08000110	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.02786
Bladder	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
MYOG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.4668
epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.279307
BRD-K07589203	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.05722
DMS-53	GDSC Cell Line Gene Expression Profiles	1.0	1.63029
MCF7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45249
PSMD11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.46382
NCI-H524	GDSC Cell Line Gene Expression Profiles	1.0	1.59443
hsa-miR-4766-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
window	GeneRIF Biological Term Annotations	1.0	null
collagen-containing extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.038
invasion	GeneRIF Biological Term Annotations	1.0	null
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0516
integumentary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.222822
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8535
ALG6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.02223
FAHD2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.44937
Rasmc	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.971
orbital frontal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.934448
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00494
BRD-K40248932	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.31469
Female reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
FAM32A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.06535
malignancy	GeneRIF Biological Term Annotations	1.0	null
Extracellular matrix	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
BHLHE22	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.1089
embryonic	GeneRIF Biological Term Annotations	1.0	null
BRD-K31024887	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.74138
gastrointestinal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058236
BRD-K78656517	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.49586
CRCGN014_HEPG2_24H:D11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.4935
released	GeneRIF Biological Term Annotations	1.0	null
TFCP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.075
hippocampus (hippocampal formation)_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.69511
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.881882
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067823
Nasopharynx	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
urinary system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
PMC6879454-Data_Sheet_1.xlsx-AA_disease-Unnamed_4_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
nonsmall	GeneRIF Biological Term Annotations	1.0	null
BRD-K52492854	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.03674
type 2 diabetes mellitus	GWASdb SNP-Disease Associations	1.0	0.898875
gingival disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.196459
BRD-K53491881	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.2774
SNGM	CCLE Cell Line Gene Expression Profiles	1.0	1.44411
Lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.271
RT4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37619
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.08926
primary motor cortex (area M1, area 4)_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.36462
BRD-K26976202	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.05419
BRD-K90858591	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.48686
morula	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.186174
CRCGN015_MCF10A_48H:F01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.0945
POLR2A_H54_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-A80010944	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.23955
PMC7997806-41397_2020_194_MOESM2_ESM.xlsx-MAGMA_GENE_DBP_ALL-GENE_DBP	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K43352598	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.38333
SON_KD_GDS4448_35_human_HeLa	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Trametinib_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0227259
perinatal necrotizing enterocolitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.266203
JIYOYEP-2003	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K22471908	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.68171
BRD-K53224741	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.39035
htr-8/svneo cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.796874
interleukin-10 receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.592
extracellular region	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.576747
BRD-K38211037	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.88767
BRD-K47062996	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.26214
smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.123318
Cobimetinib_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.012837
UMC-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.51425
TMEM200A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.52091
BRD-K39193666	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.0808
breast cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.287803
HSF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.4179
PEPD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.86401
BRD-K95943192	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.30637
female reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
BRD-K94037108	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.42023
carcinomas	GeneRIF Biological Term Annotations	1.0	null
BRD-K94109423	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.60822
FOS_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Adenocarcinoma of lung_Lung Tissue_GSE11969	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.59428
ALEXANDERCELLS	CCLE Cell Line Gene Expression Profiles	1.0	1.52832
HSC-3	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PMC10528072-NIHMS1928302-supplement-5.xlsx-ASCL1-target_genes-ABAT_ASCL1	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K45908502	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.50299
azotemia	GWASdb SNP-Phenotype Associations	1.0	0.443881
BRD-K87580376	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17687
BRD-K93335719	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.12586
CCC5	DepMap CRISPR Gene Dependency	1.0	3.74606
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.5895
CDKN2D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.18954
GSE229973_4_v_2_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Malignant Squamous Cell Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
suggests	GeneRIF Biological Term Annotations	1.0	null
BRD-K15898103	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.93729
Hypertension	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.214
FOXB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.21957
BRD-K30065842	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0129
NUTM2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.24483
GPX7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.09238
NCIH2066	CCLE Cell Line Gene Expression Profiles	1.0	1.55347
recipients	GeneRIF Biological Term Annotations	1.0	null
FGFR3_knockdown_34_GDS4454	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.79503
fallopian tube	GTEx Tissue Gene Expression Profiles	-1.0	-1.11035
fetus	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
BRD-K50212643	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.02
BRD-K01643633	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.49432
18692832-Table1	GeneSigDB Published Gene Signatures	1.0	null
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051904
USP42	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.16099
choriocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.197037
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040293
squamous	GeneRIF Biological Term Annotations	1.0	null
BRD-K50710005	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.46036
BRD-K41033343	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.0058
BRD-K65823297	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.30664
ZNF317	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.6408
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.24486
NSMCE3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.33054
BRD-K98841583	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14064
Internal female genital organ	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
abnormality of the immune system	GWASdb SNP-Phenotype Associations	1.0	0.081571
BRD-K40088786	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.78999
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-7374-01A-11R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE214931_2_v_0_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
skeletal muscle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.112639
MUS81	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-4.12809
ZNF407	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.92159
Kidney Chromophobe_KICH_TCGA-KN-8430-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.460305
BRD-K42392619	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.06424
GRHL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.857
PCGF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.71036
PEX13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.03569
BRD-K63711467	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.71784
MDA-MB-361	COSMIC Cell Line Gene Mutation Profiles	1.0	null
cdna	GeneRIF Biological Term Annotations	1.0	null
CDK5RAP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.89486
RXF393	GDSC Cell Line Gene Expression Profiles	-1.0	-1.69767
NCIH2291	DepMap CRISPR Gene Dependency	1.0	2.34278
scores	GeneRIF Biological Term Annotations	1.0	null
endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062864
lateral ganglionic eminence_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.15045
p001	GeneRIF Biological Term Annotations	1.0	null
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057535
H3K27me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044086
poor	GeneRIF Biological Term Annotations	1.0	null
metalloendopeptidase activity	GO Molecular Function Annotations 2025	1.0	null
OELE	Achilles Cell Line Gene Essentiality Profiles	1.0	1.2803
G292CLONEA141B1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.97533
CRCGN011_HEPG2_24H:O02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.49565
macrophage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.269867
BRD-K31460017	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-5.51483
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.434906
Peribronchial gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.939
BRD-K15775306	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.37159
Stomach disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.223
Bone inflammation disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.142
POU3F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7487
RILPL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.59272
phase	GeneRIF Biological Term Annotations	1.0	null
effect	GeneRIF Biological Term Annotations	1.0	null
Uterine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.408
Endometrial hyperplasia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.386
peptidase activity, acting on l-amino acid peptides	GO Molecular Function Annotations 2015	1.0	null
BRD-K52842821	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.19516
BRD-K29458940	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.6179
SLC17A9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.45532
FAM193B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.42225
MT-4 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.189
MYCBP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.48916
BRD-K61439686	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.26141
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05201
BRD-K76980944	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.16493
BRD-K28455914	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.889
COLO201	CCLE Cell Line Gene CNV Profiles	1.0	1.63872
KYSE-450	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.921048
BARHL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.4619
GABPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.0029
HNF4alpha_DEPLETION_GDS4798_91_human_HepG2 hepatocellular carcinoma cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Merkel Cell Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
negative regulation of response to stimulus	GO Biological Process Annotations 2015	1.0	null
BRD-K61370861	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.60653
BRD-K81801123	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.37276
Reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
pre-eclampsia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.168617
behavior	GeneRIF Biological Term Annotations	1.0	null
BRD-K50058129	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.41716
BRD-K27909962	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.43226
invasive	GeneRIF Biological Term Annotations	1.0	null
High Density Lipoprotein Measurement	DisGeNET Gene-Phenotype Associations	1.0	null
angiogenesis	GeneRIF Biological Term Annotations	1.0	null
BRD-K81925504	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.49568
BRD-K42139332	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.75946
abnormality of carbohydrate metabolism/homeostasis	GWASdb SNP-Phenotype Associations	1.0	0.215589
BRD-K42455150	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.67337
users	GeneRIF Biological Term Annotations	1.0	null
BRD-K85972696	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.1695
upregulate	GeneRIF Biological Term Annotations	1.0	null
DMS 454	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32523
MAF::NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.1073
CRCGN012_HEPG2_24H:N04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.6564
pyoderma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.431519
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5884-01A-11R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BeWo cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.806
hsa-miR-2909	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
Lung adenocarcinoma_LUAD_TCGA-44-7669-01A-21R-2066-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
diabetes mellitus	GWASdb SNP-Disease Associations	1.0	0.351351
SUM 52PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.60652
OS252	DepMap CRISPR Gene Dependency	1.0	3.01065
Genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.194
prognostic	GeneRIF Biological Term Annotations	1.0	null
TBX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.17223
GSE132694,GSE132717_0_v_2_meis1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K78972225	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.38513
BTG1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.25734
HDAC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CRCGN012_HEPG2_24H:O04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.8754
EIF2B5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.62416
Uterine disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.497
BRD-K47582411	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.04953
CDC20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.15163
mmp21	GeneRIF Biological Term Annotations	1.0	null
Kidney Chromophobe_KICH_TCGA-KO-8405-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
single-organism process	GO Biological Process Annotations 2015	1.0	null
elevated	GeneRIF Biological Term Annotations	1.0	null
membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
BRD-K98731550	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.6631
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A80M-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.310059
BRD-K18313650	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.32296
TKKK	DepMap CRISPR Gene Dependency	1.0	4.28076
Fibrosarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.031
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07664
gingiva	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.166106
JAG1_OE_GDS3571_40_human_endometrial stromal cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
FOXP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3795
TSEN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.19603
P2URK562	DepMap CRISPR Gene Dependency	1.0	3.28932
CBX3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.9954
SNU-283	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Asthma_Epithelial Cell_GSE4302	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.40069
abnormality of the placenta	GWASdb SNP-Phenotype Associations	1.0	1.08891
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.96394
colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057319
system	GeneRIF Biological Term Annotations	1.0	null
abnormality of the urinary system	GWASdb SNP-Phenotype Associations	1.0	0.151627
bleeding	GeneRIF Biological Term Annotations	1.0	null
NCI-H345	GDSC Cell Line Gene Expression Profiles	1.0	1.42784
breast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.238108
blood vessel endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061592
ERF::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5358
ZBTB18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5968
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.949531
BRD-K62965224	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.97084
BRD-K13898728	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.36688
BRD-K58286708	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.24752
TSC22D2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01276
NCIH69	CCLE Cell Line Gene Expression Profiles	1.0	1.69706
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.7532
BRD-K36713925	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.67877
Pancreatic adenocarcinoma_PAAD_TCGA-US-A776-01A-13R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SkeletalMuscle	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	2.2603
orbital frontal cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.05469
trophoblast	GeneRIF Biological Term Annotations	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-33-6737-01A-11R-1820-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.975
HCC1806	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76488
negative regulation of inflammatory response	GO Biological Process Annotations 2015	1.0	null
BRD-A26343863	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.07506
BRD-K18211442	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.20615
ZNF582	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.4471
metabolic process	GO Biological Process Annotations 2015	1.0	null
CRCGN016_MCF10A.TP53.M_24H:O18	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.20826
BRD-K18709210	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.09167
JURKAT	DepMap CRISPR Gene Dependency	1.0	7.31962
NCI-H1650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38923
VCY	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.58646
BRD-K07895476	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.13347
Organism form	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
BRD-K72255851	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.05397
BRD-A29578214	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.36339
PMC7997806-41397_2020_194_MOESM2_ESM.xlsx-MAGMA_GENE_SBP_AA-GENE_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
hematopoietic system disease	GWASdb SNP-Disease Associations	1.0	1.24313
Smoking	DisGeNET Gene-Phenotype Associations	1.0	null
MARCHF5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.91765
BRD-K38282015	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.67569
HT29	BioGPS Cell Line Gene Expression Profiles	1.0	1.19829
BRD-K27092365	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.11554
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2548
Skin cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.14
Stomach	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
BRD-K53816426	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.61478
midluteal	GeneRIF Biological Term Annotations	1.0	null
ELK1::HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5352
BRD-K40612106	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.05948
Reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.737
Prostate adenocarcinoma_PRAD_TCGA-2A-A8VO-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC4224449-pone.0112193.s009.xlsx-PPI_MODULES_CLEAN_MAP_merg_OUT-Symbol_TCF23	Rummagene Transcription Factor Associations 2026	1.0	null
Glottis squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.235
hematopoiesis	GeneRIF Biological Term Annotations	1.0	null
ANXA5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.0804
downregulation	GeneRIF Biological Term Annotations	1.0	null
496100488_TCx_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	12.2837
since	GeneRIF Biological Term Annotations	1.0	null
CRCGN015_MCF10A.TP53.M_24H:J07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.28055
uterine endometrium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.2913
compared	GeneRIF Biological Term Annotations	1.0	null
BRD-K11804865	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.39634
hippocampus (hippocampal formation)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.93343
ZSCAN5C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.19523
USF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1686
DNMT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.11043
SNRPD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.69454
SEMA6C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.17637
regulation of response to stress	GO Biological Process Annotations 2015	1.0	null
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051058
throughout	GeneRIF Biological Term Annotations	1.0	null
ZXDC_KD_GDS5070_504_human_U937	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065089
PMC7997806-41397_2020_194_MOESM2_ESM.xlsx-MAGMA_GENE_SBP_AA-SYMBOL_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
characteristics	GeneRIF Biological Term Annotations	1.0	null
fibrosarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.431843
NFIL3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2835
DMS79	CCLE Cell Line Gene Expression Profiles	1.0	1.49449
characterization	GeneRIF Biological Term Annotations	1.0	null
lymphoma	GWASdb SNP-Phenotype Associations	1.0	1.08891
disease by infectious agent	GWASdb SNP-Disease Associations	1.0	0.19327
ZR7530	Achilles Cell Line Gene Essentiality Profiles	1.0	1.16578
BRD-K24308170	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.72644
KPTN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.46277
processes	GeneRIF Biological Term Annotations	1.0	null
BRD-K99516890	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.60548
pre	GeneRIF Biological Term Annotations	1.0	null
FAM168A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.73119
BRD-K23220745	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.38947
uterine	GeneRIF Biological Term Annotations	1.0	null
prilocaine-4749	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Irinotecan (hydrochloride)_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0216431
Benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.157
Duodenum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
collagen metabolic process	GO Biological Process Annotations 2015	1.0	null
BRD-K96485138	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.34717
Inflammatory bowel disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.036
Hyaline layer	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.238
Rectum adenocarcinoma_READ_TCGA-G5-6572-01A-11R-1830-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC38	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.05967
BRD-K72484719	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.61705
various	GeneRIF Biological Term Annotations	1.0	null
SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8874
BRD-K74216068	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.0253
ETV5::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8933
SIK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.61363
extracellular matrix organization	GO Biological Process Annotations 2023	1.0	null
BRD-K53774433	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.33901
BEN	CCLE Cell Line Gene Expression Profiles	1.0	1.95103
Polycystic Ovary Syndrome	DisGeNET Gene-Disease Associations	1.0	null
abnormality of cholesterol metabolism	GWASdb SNP-Phenotype Associations	1.0	1.08891
male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.440274
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RK-01A-11R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K61079130	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.09536
FOXF2	JASPAR Predicted Transcription Factor Targets	1.0	null
breast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.468436
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.859362
NCIH1915	CCLE Cell Line Gene CNV Profiles	1.0	2.26589
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.11907
ETV2::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2792
BRD-K63779242	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00516
Lung Injury_Lung Tissue_GSE1541	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.12453
coronary disease	GAD Gene-Disease Associations	1.0	null
Endometrial luminal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.637
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.851257
endometrial carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.0324
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-VB-A8QN-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Dermal microvascular endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.521
Thrombospondin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.331
FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.672
jaw	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.184124
BRD-K35469110	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.76582
NCI-H2171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07243
SLC6A6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-4.06378
ACAD10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.34783
Seminal vesicle	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
BRD-K98601267	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.25182
sites	GeneRIF Biological Term Annotations	1.0	null
C8166	DepMap CRISPR Gene Dependency	1.0	3.31578
DERL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.19376
MOTN1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34345
BRD-K80679698	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.23858
Complex of collagen trimers	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.079
viscus	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
esophageal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.193844
Tenascin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.459
lymphatic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.052671
BRD-K82662168	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.95639
CRCGN015_MCF10A.TP53.M_24H:F17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.5312
abnormality of the kidney	GWASdb SNP-Phenotype Associations	1.0	1.08891
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.02995
BRD-K11477112	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02113
VMRCRCZ	CCLE Cell Line Gene CNV Profiles	-1.0	-2.5944
Adrenocortical carcinoma_ACC_TCGA-OR-A5JO-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H2081	GDSC Cell Line Gene Expression Profiles	1.0	1.87128
BRD-K99939253	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.76527
BRD-K77535986	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.07681
COLO783	Achilles Cell Line Gene Essentiality Profiles	1.0	1.54274
BRD-K61206648	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.37645
type 2 diabetes	GAD Gene-Disease Associations	1.0	null
CRCGN013_HEPG2_24H:O06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.72333
disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046684
direct	GeneRIF Biological Term Annotations	1.0	null
JHOM1	Achilles Cell Line Gene Essentiality Profiles	1.0	2.08644
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.934107
Coronary artery smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.935
inclusion body	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.295119
PMC9508118-42003_2022_3857_MOESM6_ESM.xlsx-d-Classification_of_camel_SON_basal_genes_-_enzymes_SON	Rummagene Transcription Factor Associations 2026	1.0	null
plasma membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045908
P63_DEPLETION_GDS2534_63_human_ME180 cervical carcinoma cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.222938
BRD-K60839995	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.65062
BRD-K82064887	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.12983
PMC8104016-hcg-12-e002353-s006.xlsx-mTHP-1-LPS_Prom-Distal-RefSeq_Name_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
biological_process	GO Biological Process Annotations 2015	1.0	null
Urinary tract	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
BRD-K71521842	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.5513
BRD-K02837259	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.03474
L3HYPDH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.31547
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.2107
CRCGN010_HEPG2_24H:O06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.22556
GPKOW	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.03336
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
BRD-K77965546	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.30734
RHOXF2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.9645
Minodronic acid_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0168011
collagen trimer	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.278141
TBX19	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2737
endometrial	GeneRIF Biological Term Annotations	1.0	null
metallopeptidase activity	GO Molecular Function Annotations 2025	1.0	null
plant embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058008
CRCGN008_HEPG2_24H:K22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.02245
ruled	GeneRIF Biological Term Annotations	1.0	null
BRD-K11307720	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.29247
BRD-K37770214	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.51156
SK-MES-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
processing	GeneRIF Biological Term Annotations	1.0	null
kidney	GTEx Tissue Gene Expression Profiles	1.0	0.884522
BRD-K36314834	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.18761
myeloid progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.08094
prostate gland cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.600077
BTS	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.37389
BRD-K39639513	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	5.01245
negative regulation of inflammatory response	GO Biological Process Annotations 2023	1.0	null
maximal	GeneRIF Biological Term Annotations	1.0	null
Clotrimazole_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0270019
HOXB5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0716
multicellular organismal process	GO Biological Process Annotations 2015	1.0	null
Merkel cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.008
gallbladder	HPA Tissue Protein Expression Profiles	1.0	0.98309
MAFG::NFE2L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.368
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32523
roles	GeneRIF Biological Term Annotations	1.0	null
YH13	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46487
neoplasm by anatomical site	GWASdb SNP-Phenotype Associations	1.0	0.11466
BRD-K27352194	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.26331
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.231482
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.846
choriocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.643669
NCI-H1915	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.862036
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2672
BRD-K19118372	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.13852
COLO-792	COSMIC Cell Line Gene Mutation Profiles	1.0	null
uterine fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.481648
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.934107
sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.11919
intraepithelial	GeneRIF Biological Term Annotations	1.0	null
monitoring	GeneRIF Biological Term Annotations	1.0	null
BRD-K46890865	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.33604
bone cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.089725
METTL5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.59345
BRD-A21584932	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03533
LN18	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.13702
trophoblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.358174
uterine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.862228
ARHGAP21	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.46274
ATP6V1E1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.18436
amygdaloid complex_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.0289
tcell	GeneRIF Biological Term Annotations	1.0	null
ZNF768	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.3275
BRD-K45421483	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17864
Mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.349
implies	GeneRIF Biological Term Annotations	1.0	null
JHH7	CCLE Cell Line Gene Expression Profiles	1.0	1.4393
BRD-K47631316	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.51401
BRD-K01910220	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.78131
SNU-1040	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Gingival fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.096
BRD-K40018788	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.53741
proteolysis	GO Biological Process Annotations 2015	1.0	null
TPRX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.69552
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17249
Endometriosis of uterus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.006
mt2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.18
PECAPJ49	CCLE Cell Line Gene Expression Profiles	-1.0	-1.78874
PANC1	CCLE Cell Line Gene CNV Profiles	1.0	2.0934
GSE126504_0_v_1_hpse_human	RummaGEO Gene Perturbation Signatures	1.0	null
periodontal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.189551
BRD-K95485901	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.46194
Blood Pressure	DisGeNET Gene-Phenotype Associations	1.0	null
BRD-K62698674	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.43632
artery disease	GWASdb SNP-Disease Associations	1.0	0.158932
OV7	DepMap CRISPR Gene Dependency	1.0	2.27033
CRCGN008_HEPG2_24H:A10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.22085
CENPP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.72022
Sodium Salicylate_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.019895
irregular	GeneRIF Biological Term Annotations	1.0	null
BRD-A64849281	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.70914
primary auditory cortex (core)_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.876471
BRD-K22661969	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.37426
FOS_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POU5F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.1205
proteinaceous extracellular matrix	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
fibrinogen complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.170371
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37534
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.48691
BRD-K19830171	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.40023
BRD-K20724649	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.42727
WASHC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.38145
RERF-GC-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.89125
BRD-K06392309	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.37119
jeg-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.563637
VMRC-LCD	COSMIC Cell Line Gene Mutation Profiles	1.0	null
b-lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.121408
KYO1	DepMap CRISPR Gene Dependency	1.0	9.26822
medial ganglionic eminence_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.23132
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33674
BRD-K59970200	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.19262
neoplasia	GeneRIF Biological Term Annotations	1.0	null
basement membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.806606
BRD-K26734305	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.24063
TIMM23	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35715
BRD-K78995236	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.46111
BRD-A35495382	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.57816
PI4KB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.24686
abnormality of erythrocytes	GWASdb SNP-Phenotype Associations	1.0	0.324422
glioma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.096693
dorsolateral prefrontal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.39833
prepuce	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.199768
BRD-K42654859	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.63527
DDX17	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99093
endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068238
PAQR8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.48166
Interstitial matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.014
PMC2742312-1479-7364-3-3-221-S3.PDF-222-ZNF195_ZNF195	Rummagene Transcription Factor Associations 2026	1.0	null
vagina	HPA Tissue Protein Expression Profiles	1.0	0.98309
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.80945
healthier	GeneRIF Biological Term Annotations	1.0	null
zygote	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.182104
aclarubicin	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.67995
colocalized	GeneRIF Biological Term Annotations	1.0	null
enterocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.437205
ANKLE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.86858
STAT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.8957
LSM8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.12476
hsa-miR-4277	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
type ii diabetes mellitus	GWASdb SNP-Phenotype Associations	1.0	0.790435
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060398
BRD-K58890106	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.18769
Corpus luteum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.879
Tooth enamel	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.944
PRDX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.75811
penis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.184307
primary auditory cortex (core)_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.16371
FAM72D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86184
hippocampus (hippocampal formation)_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.5473
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.934107
496100567_PCx_no dementia_TBI_87_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.79488
TrigeminalGanglion	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.03737
parasitic infectious disease	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	1.14929
COLO 853	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.992844
Metallopeptidase, catalytic domain	InterPro Predicted Protein Domain Annotations	1.0	null
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.448731
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.564112
Endometrial gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.295
Carcinoma Of Lung	DisGeNET Gene-Disease Associations	1.0	null
MAGOH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.85112
CRCGN010_HEPG2_24H:H24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.4322
myometrium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.28887
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.4492
Periodontal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.432
Scale	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.67
BRD-A97198094	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.28963
CRCGN014_HEPG2_24H:K23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.39763
prostate cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.41465
BRD-K83815133	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.5124
Uterine cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.925
CRCGN010_HEPG2_24H:O03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.81393
tomelukast-222	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
KM12	BioGPS Cell Line Gene Expression Profiles	1.0	0.917469
BRD-K15259307	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1266
blood cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060543
posteroventral (inferior) parietal cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.13435
TCCSUP	CCLE Cell Line Gene Expression Profiles	-1.0	-3.01817
RCC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.06661
substrate	GeneRIF Biological Term Annotations	1.0	null
FOXP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.406
FOS_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Rectum adenocarcinoma_READ_TCGA-DC-6160-01A-11R-1660-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Intestine	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
possibly	GeneRIF Biological Term Annotations	1.0	null
BRD-K28937085	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.19301
BRD-K18726958	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.18408
gmcsf	GeneRIF Biological Term Annotations	1.0	null
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056904
BRD-K90049800	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1448
Colonic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.216
Infertility	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.121
BCAS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.33414
PSMC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10003
SLC25A6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.27812
BRD-K71554049	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00192
MTMR12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.29876
ACHN	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.3007
Integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.23
GON4L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.40366
BRD-K52083268	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.71904
NFIL3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50294
remodelling	GeneRIF Biological Term Annotations	1.0	null
BRD-K68916730	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.16314
CKAP2L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.27593
Excretory gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GRHL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.463
496100347_PCx_no dementia_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.48518
CDKN1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77662
MAP3K2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.00439
leukemia	GWASdb SNP-Phenotype Associations	1.0	1.08891
BRD-K49208610	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.5021
NCIH1836	CCLE Cell Line Gene Expression Profiles	1.0	1.80716
D425	DepMap CRISPR Gene Dependency	1.0	4.53413
abnormal bone structure	GWASdb SNP-Phenotype Associations	1.0	0.181043
SAP18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.68506
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.274045
EXOC7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.06267
COV362	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.20091
BRD-K58469385	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.31289
FOXE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10003
Arteriosclerotic cardiovascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.124
NKX6-1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8078
GSE147366_3_v_2_med13_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Endometrial cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.452
BRD-K73357447	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.46951
BRD-K95323755	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.30388
BRD-K47762331	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.98646
Trophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.473
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40552
aklomide	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.41041
stored	GeneRIF Biological Term Annotations	1.0	null
mmp26	GeneRIF Biological Term Annotations	1.0	null
C2BBE1	Achilles Cell Line Gene Essentiality Profiles	1.0	1.089
BRD-K44834268	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.08308
anterior (rostral) cingulate (medial prefrontal) cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.834056
BRD-K03015524	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.44545
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.307395
Parasitic protozoa infectious disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.746
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.73327
Liver Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
CHMP4A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.05723
aggressive periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.711989
hsa-miR-4274	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
ERLIN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.0691
Prostate adenocarcinoma_PRAD_TCGA-KK-A8IF-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
theca externa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.787299
extracellular region part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.569664
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.308974
gingival fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.544152
process	GeneRIF Biological Term Annotations	1.0	null
Varicosity	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.842
CRCGN015_MCF10A.TP53.M_24H:J06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.0207
BRD-K52300725	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.14869
BRD-K58795356	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.16064
torasemide-3517	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
BRD-K80690345	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00637
BHY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52924
LMSU	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
posteroventral (inferior) parietal cortex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.53222
PA-TU-8988T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17249
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053811
BRD-K11297155	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.06916
igg	GeneRIF Biological Term Annotations	1.0	null
placentation	GeneRIF Biological Term Annotations	1.0	null
Anaplasia	DisGeNET Gene-Disease Associations	1.0	null
promotes	GeneRIF Biological Term Annotations	1.0	null
Matrix metalloproteinase-26	InterPro Predicted Protein Domain Annotations	1.0	null
TECPR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14346
Finasteride_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0171579
coronary artery disease	GWASdb SNP-Disease Associations	1.0	0.446919
putative	GeneRIF Biological Term Annotations	1.0	null
BRD-K02602127	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.23343
496100658_FWM_probable Alzheimer's disease_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.05011
POU2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2528
POU3F1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.31399
SUM185PE	DepMap CRISPR Gene Dependency	1.0	4.9222
RPP40	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.03051
Uterine adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.961
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.8073
marker	GeneRIF Biological Term Annotations	1.0	null
shoot	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055555
extracellular structure organization	GO Biological Process Annotations 2023	1.0	null
Lymphoma_burkitts(Raji)	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.88821
BRD-K34974135	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	5.23013
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.887
BRD-K97106314	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.92154
diabetes mellitus	GWASdb SNP-Phenotype Associations	1.0	0.317304
BRD-K49203165	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.52209
KBTBD7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.23411
ZNF667	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9578
CRCGN017_MCF10A.WT.HP_24H:O01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.04231
extracellular structure organization	GO Biological Process Annotations 2025	1.0	null
plumule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058875
Integrin alphav-beta6 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.642
PMC10011543-41419_2023_5707_MOESM4_ESM.xlsx-genes_with_unique_SNP-F5-Thygro-r__CIC-1n_h-r__CIC-2n_h-r_CIC	Rummagene Transcription Factor Associations 2026	1.0	null
HEC-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NEPRO	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.1491
only	GeneRIF Biological Term Annotations	1.0	null
BRD-K31503053	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.45439
Sarcoma_SARC_TCGA-FX-A48G-01A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K02833343	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.33524
TestisGermCell	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.48285
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RPF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.48794
BRD-K14394756	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.51982
TOV112D	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.13408
EFTUD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.36547
Breast carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.424
BRD-K64317863	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01862
BRD-K19245310	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.39835
BRD-K43674766	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.45677
autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045683
BACH1-22875853-CHIP-PCR-HELA-AND-SCP4-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K19501975	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.32731
endometrial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.747102
Placenta	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
laminin-1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.928
Respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.274
NCIH2286	CCLE Cell Line Gene CNV Profiles	1.0	1.36317
craniofacial region	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.136877
SNU475	CCLE Cell Line Gene Expression Profiles	-1.0	-2.71756
Neoplasm Metastasis	DisGeNET Gene-Phenotype Associations	1.0	null
BRD-K52881132	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.56892
regulation of inflammatory response	GO Biological Process Annotations 2023	1.0	null
THNSL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.3028
BRD-K92167240	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.88602
SNU1033	DepMap CRISPR Gene Dependency	1.0	5.5804
PMC7997806-41397_2020_194_MOESM2_ESM.xlsx-MAGMA_GENE_MAP_AA-SYMBOL_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.89316
granulocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.242363
ALKBH4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.36323
FOSL1::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9835
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1055
NCIH1703	CCLE Cell Line Gene CNV Profiles	-1.0	-1.82725
Sarcoma_SARC_TCGA-HB-A2OT-01A-11R-A21T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-A34826857	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.26501
Capillary pericyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.675
transition metal ion binding	GO Molecular Function Annotations 2015	1.0	null
spleen	GTEx Tissue Gene Expression Profiles	-1.0	-1.11035
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.928508
Diabetes Mellitus	DisGeNET Gene-Disease Associations	1.0	null
KYSE-510	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24865
duodenum	HPA Tissue Protein Expression Profiles	1.0	0.98309
BC-3	GDSC Cell Line Gene Expression Profiles	1.0	2.00497
TBR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8215
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
BRD-A64761364	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.27151
BRD-K34808207	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.48359
PMC8844187-Table_2.xlsx-prostate-DLX1_DLX1	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K02230174	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.20685
BRD-K67082570	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.20005
Pancreatic adenocarcinoma_PAAD_TCGA-3A-A9IL-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K48059443	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.84134
Uterine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.6
CYB5D1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.97026
ZR7530	CCLE Cell Line Gene Expression Profiles	1.0	1.5889
BRD-K52049165	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.72433
Organism form	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
CRCGN014_HEPG2_24H:A16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.1564
pyoderma gangrenosum	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.563723
Kidney renal papillary cell carcinoma_KIRP_TCGA-HE-A5NI-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CAMA1	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.38896
BRD-K60780031	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.2046
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.082806
PMC2866657-pone.0010547.s001.xls-ERG-high-GENES_UPREGULATED_IN_ERGhigh_ERG	Rummagene Transcription Factor Associations 2026	1.0	null
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
Dapagliflozin_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0265519
UMUC16	DepMap CRISPR Gene Dependency	1.0	2.8642
PMC11648501-evcna-2-3-202-SupplementaryMaterials.pdf-48-MIXL1_MIXL1	Rummagene Transcription Factor Associations 2026	1.0	null
NCIH292	CCLE Cell Line Gene CNV Profiles	1.0	1.36033
complicated	GeneRIF Biological Term Annotations	1.0	null
Hepatobiliary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.024
Peptidase M10A	InterPro Predicted Protein Domain Annotations	1.0	null
SYT4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.42055
BRD-K68008192	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.09214
Collagen network	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.102
PMC8766486-42003_2021_2990_MOESM3_ESM.xlsx-ST18-Supplementary_Data_18_Gene_burden_for_deletions_by_subtype_ST18	Rummagene Transcription Factor Associations 2026	1.0	null
arcap	GeneRIF Biological Term Annotations	1.0	null
CRCGN011_HEPG2_24H:O04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.6707
BRD-K64862097	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.92584
BRD-K03995743	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.41975
CRCGN016_MCF10A.WT.HP_24H:G10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.13415
JMJD4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.01342
LAMA84	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.03655
kyse-30 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.920771
PRDM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3162
CRCGN015_MCF10A.WT.HP_24H:P17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.05048
DLD1	CCLE Cell Line Gene CNV Profiles	1.0	1.44533
SUDHL6	CCLE Cell Line Gene CNV Profiles	1.0	1.37204
enzymatic	GeneRIF Biological Term Annotations	1.0	null
Sarcoma_SARC_TCGA-PT-A8TR-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-A39900448	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.19282
skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051594
CHAGOK1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53475
BRD-A95239561	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.83702
Female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.582
CHD1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.69641
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.548
breast cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.248361
TC138	DepMap CRISPR Gene Dependency	1.0	2.01849
NR1I3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4561
details	GeneRIF Biological Term Annotations	1.0	null
KATO III	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1434
trophoblastliketrophoblast	GeneRIF Biological Term Annotations	1.0	null
mononuclear phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075998
hsa-miR-4691-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
disease	GWASdb SNP-Disease Associations	1.0	0.041275
CRCGN014_HEPG2_3H:P03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.85905
specific	GeneRIF Biological Term Annotations	1.0	null
Endometrial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.236
HLF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7186
BRD-K49878220	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.52225
Great saphenous vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.86
Uterus-epithelial cell	Tabula Sapiens Gene-Cell Associations	1.0	2.11132
C2orf15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.57002
BRD-K99331577	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.34891
Chorionic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.307
Peptidase, metallopeptidase	InterPro Predicted Protein Domain Annotations	1.0	null
Breast carcinoma in situ	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.563
BRD-K10698156	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.65688
HUCCT1	DepMap CRISPR Gene Dependency	1.0	2.50135
Polycystic ovary syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.147
ELF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.7295
Kohler's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.489
SUM149PT	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.712232
Pentoxifylline_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	1.0	0.0245159
efficient	GeneRIF Biological Term Annotations	1.0	null
regulation of response to wounding	GO Biological Process Annotations 2015	1.0	null
inferolateral temporal cortex (area TEv, area 20)_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.39558
abnormality of blood and blood-forming tissues	GWASdb SNP-Phenotype Associations	1.0	0.208114
AAGAB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.77462
uterus	GTEx Tissue Gene Expression Profiles	1.0	1.6685
BRD-K49207204	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.36233
CFAP20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.34613
orbital frontal cortex_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.981913
single-organism catabolic process	GO Biological Process Annotations 2015	1.0	null
carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.562946
mucocutaneous lymph node syndrome	GAD Gene-Disease Associations	1.0	null
pre-malignant neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.383708
esophageal	GeneRIF Biological Term Annotations	1.0	null
BRD-K62157654	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00802
MKN7	CCLE Cell Line Gene CNV Profiles	1.0	2.47652
MDAMB453	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.68225
Microfibril	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.084
Lung squamous cell carcinoma_LUSC_TCGA-66-2754-01A-01R-0980-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
tooth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.122396
Waardenburg syndrome type 2A	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.228
LU99	CCLE Cell Line Gene CNV Profiles	1.0	1.89267
protein metabolic process	GO Biological Process Annotations 2025	1.0	null
reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.727738
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.71801
Uterine epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.731
Vitamin K4_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	1.0	0.0136394
CRCGN015_MCF10A_48H:G13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.9791
acquired metabolic disease	GWASdb SNP-Disease Associations	1.0	0.178482
Villous trophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.841
integral	GeneRIF Biological Term Annotations	1.0	null
BRD-K31720099	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.43759
placenta	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.769027
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3326
adhesion	GeneRIF Biological Term Annotations	1.0	null
Cysteine synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.869
RBPJ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6757
Gonadal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.377
SAP30	ENCODE Transcription Factor Targets	1.0	null
BRD-K22244754	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.44371
BRD-K07396550	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15852
U20S	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.81168
Brivudine_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0235758
BRD-K56373119	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.65164
GSE239784_1_v_0_sat1_human	RummaGEO Gene Perturbation Signatures	1.0	null
Foreskin fibroblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.731
CTCF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.23693
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059538
SNUC1	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.32712
NR1H2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.48
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.2115
spleen	HPA Tissue Protein Expression Profiles	-1.0	-2.18772
BRD-K63960902	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.62206
RFX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.503
KLHL12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.86324
colonic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059925
Uterine epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.519
BRD-A15330900	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.61952
Adrenal gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
BRD-K97236134	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.08933
BRD-K85362541	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.14163
Non-Small Cell Lung Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
mediodorsal nucleus of thalamus_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.52399
BRD-K27221973	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22368
PMC3870072__F4	PFOCR Pathway Figure Associations 2023	1.0	null
Mean corpuscular volume	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.00458
disease by infectious agent	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	1.14929
NAT10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.36425
Prostate adenocarcinoma_PRAD_TCGA-KK-A6E4-01A-11R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
presence	GeneRIF Biological Term Annotations	1.0	null
SERPINA1	Pathway Commons Protein-Protein Interactions	1.0	null
BRD-K36120694	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.40129
BRD-K85216683	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.11164
abnormality of bone marrow cell morphology	GWASdb SNP-Phenotype Associations	1.0	0.275408
Mammary duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.791
single-organism metabolic process	GO Biological Process Annotations 2015	1.0	null
NCI-H526	GDSC Cell Line Gene Expression Profiles	1.0	1.67893
TIGD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.20296
Glandular epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.571
nucleus pulposus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.217762
BRD-A01403444	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.60198
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051554
Breast ductal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.347
BCL6B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.9349
POU2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2845
SCRT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5733
NUP160	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.27652
STMN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.77524
Prostate adenocarcinoma_PRAD_TCGA-KK-A6E8-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K78983822	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.26216
protein metabolic process	GO Biological Process Annotations 2015	1.0	null
Gingival disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.224
ABCB7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.02265
E2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9097
KCNIP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.03866
salivary gland	GTEx Tissue Gene Expression Profiles	-1.0	-1.11035
trophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.536229
Uterus-epithelial cell of uterus	Tabula Sapiens Gene-Cell Associations	1.0	1.61121
EWSR1	ChEA Transcription Factor Targets	1.0	null
C99	DepMap CRISPR Gene Dependency	1.0	2.48052
colorectal adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.180997
wildtype	GeneRIF Biological Term Annotations	1.0	null
highgrade	GeneRIF Biological Term Annotations	1.0	null
BRD-K81501934	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.6196
BRD-K71501826	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.08271
Coronary artery smooth muscle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.949
MCM6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.17309
BRD-K75821161	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.24614
predicting	GeneRIF Biological Term Annotations	1.0	null
BRD-K77609086	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.79911
NCI-H1869	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31216
GATAD2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.30526
adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.312957
PGR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6356
SEC63	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.94623
BRD-K29466595	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03976
CRCGN014_HEPG2_24H:P01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.35273
BRD-K34695725	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.59747
Breast disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.642
when	GeneRIF Biological Term Annotations	1.0	null
diagnosis	GeneRIF Biological Term Annotations	1.0	null
COV318	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28781
BRD-K44944875	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.01184
TP63	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.4673
ETV5::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.015
BRD-K90094729	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2614
BRD-K12328371	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.60834
LBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6288
Endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.37
ventrolateral prefrontal cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.06772
Prostate adenocarcinoma_PRAD_TCGA-2A-A8VV-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-KC-A7FA-01A-21R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K72932441	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.98163
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.431843
Melanoma	DisGeNET Gene-Disease Associations	1.0	null
BRD-K43017905	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.44904
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.850131
colonic adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.223419
BRD-K92565319	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.31365
Henoch-Schoenlein Purpura	DisGeNET Gene-Disease Associations	1.0	null
Uterine luminal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.701
Fertilization envelope	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.563
inferolateral temporal cortex (area TEv, area 20)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.09774
aortic smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.32205
Erlotinib_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0256709
Waardenburg syndrome type 2E	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.523
LSG1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42099
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.934107
CRCGN012_HEPG2_24H:O03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.00206
PMC2749258__F3	PFOCR Pathway Figure Associations 2023	1.0	null
beta-catenin-TCF7L2 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.795
ACSF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.47008
periodontium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.141318
cranium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.148148
RAP1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.78508
genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043886
STAG2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.2882
Renal clear cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.516
Sarcoma_SARC_TCGA-MO-A47P-01A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QT-A5XJ-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC70	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.44106
RRS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.44185
NANOS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.88255
Kidney renal papillary cell carcinoma_KIRP_TCGA-G7-6795-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.197742
dorsolateral prefrontal cortex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.20405
matrix	GeneRIF Biological Term Annotations	1.0	null
breast	GeneRIF Biological Term Annotations	1.0	null
BRD-A88461048	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.05506
Laminin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.597
theca folliculi	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.399114
Placenta	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
aspc-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.307167
BRD-K81450614	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.27635
pre-eclampsia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.261
BRD-K35124958	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.19388
TSEN54	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.20023
XPOT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.86531
KMRC2	DepMap CRISPR Gene Dependency	1.0	10.1149
POMP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.43479
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.173543
BRD-K41133627	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.30414
ovarian cancer	GAD Gene-Disease Associations	1.0	null
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1055
cycle	GeneRIF Biological Term Annotations	1.0	null
BRD-K03305572	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.38577
ICAM3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35525
placental	GeneRIF Biological Term Annotations	1.0	null
BRD-K45569026	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.1871
PMC6923859__F3	PFOCR Pathway Figure Associations 2023	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-WY-A859-01A-12R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CTCF_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
KPL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07243
invasiveness	GeneRIF Biological Term Annotations	1.0	null
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
BRD-K12115687	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.35065
male reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.074815
PANC0213	CCLE Cell Line Gene Expression Profiles	-1.0	-1.60381
BRD-K93508241	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00732
C1orf74	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.12988
PMC11648501-evcna-2-3-202-SupplementaryMaterials.pdf-14-ETS1_ETS1	Rummagene Transcription Factor Associations 2026	1.0	null
Lung adenocarcinoma_LUAD_TCGA-86-8358-01A-11R-2326-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K82700281	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.30754
brain cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061645
PMC7037626__F1	PFOCR Pathway Figure Associations 2023	1.0	null
ATP6V1F	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.55519
Vagina	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
ARHGEF39	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.79003
endometrium	HPA Tissue Protein Expression Profiles	-1.0	-1.2583
extracellular region part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
abnormality of skeletal morphology	GWASdb SNP-Phenotype Associations	1.0	0.081571
Tadpole	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.194
AR-27623747-22RV1-MOUSE-PROSTATE-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K45576113	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.58744
BRD-K07662722	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.82025
PMC12179525-mmc1.xlsx-Group_HNF4A_vs_Null_sign-Supplemental_Table_S1_Differentially_expressed_genes_in_HNF4A-transduced_cells_vs_Null_HNF4A	Rummagene Transcription Factor Associations 2026	1.0	null
PLCD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.36402
Mean Corpuscular Volume (Result)	DisGeNET Gene-Phenotype Associations	1.0	null
DLD-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.860894
Lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.272
primary auditory cortex (core)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.69756
ZXDC1_KD_GSE45417_686_human_U937	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040804
SKIC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.31651
BRD-K42032479	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.17464
Saphenous vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.565
FOXF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1111
Breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.626
amygdaloid complex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.6053
rectal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.170275
squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.30032
BRD-A27422067	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.97449
Fibrosarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.096
BRD-K53797069	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.5166
conversion	GeneRIF Biological Term Annotations	1.0	null
CTDP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15524
Inherited metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.02
Keratocyst	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.095
sparteine-2134	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
FOXO6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7498
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-5117-01A-01R-1420-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
IFI16	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.71496
BRD-K24640918	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04422
Brain - Anterior cingulate cortex (BA24)	GTEx Tissue Gene Expression Profiles 2023	1.0	1.90595
colitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.166768
abnormality of the genitourinary system	GWASdb SNP-Phenotype Associations	1.0	0.081571
PBX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.83186
Reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
NCIH1650	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52091
Gastrointestinal tract	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
CRCGN009_HEPG2_24H:N04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.80295
squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.458619
PMC6923859__F3	PFOCR Pathway Figure Associations 2024	1.0	null
BRD-K55867695	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.39054
Liver hepatocellular carcinoma_LIHC_TCGA-XR-A8TC-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K00505499	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.4595
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.5213
BRD-K07230804	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.20195
UPP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.93948
WDR36	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.8381
496100296_PCx_possible Alzheimer's disease_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.65296
elevations	GeneRIF Biological Term Annotations	1.0	null
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6383
MC-IXC	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K93101873	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.40763
PMC10335698-pone.0285806.s008.xlsx-Cancer_driver_gene_in_KD_group-Gene_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Ovarian disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.404
NCIH810	CCLE Cell Line Gene Expression Profiles	1.0	1.69209
reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048762
Endometrial Hyperplasia	DisGeNET Gene-Disease Associations	1.0	null
Endocrine gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
intestinal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.130882
Matrix metalloproteinases	WikiPathways Pathways 2024	1.0	null
RPS27	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.03212
VENTX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32188
metabolic	GAD High Level Gene-Disease Associations	1.0	0.293278
BRD-K87146261	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.61299
HOXD10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.16179
tgfbeta	GeneRIF Biological Term Annotations	1.0	null
Diabetes Mellitus, Type 2	HuGE Navigator Gene-Phenotype Associations	1.0	null
gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
FOXG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0312
FERD3L	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.8362
IGFBP1	Pathway Commons Protein-Protein Interactions	1.0	null
BRD-K73443280	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.13974
SAS cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.618
Docetaxel_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0235868
BRD-K58005972	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.24377
BRD-K60716223	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.07849
EIF6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.19318
facilitate	GeneRIF Biological Term Annotations	1.0	null
UTP18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.32623
LTF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84164
endometrial stromal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.50471
BRD-K00530465	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.05829
MFE319	DepMap CRISPR Gene Dependency	1.0	2.54881
Ovarian dysfunction	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.173
hsa-miR-758	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
Bladder Urothelial Carcinoma_BLCA_TCGA-E7-A6ME-01A-22R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.08325
BRD-K18562194	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.05034
Trophoblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.818
bronchus	HPA Tissue Protein Expression Profiles	1.0	0.98309
plasmacytoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.555671
fibrosarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.408972
amniochorion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.601686
Cholesteatoma tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.851
Ameloblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.873
BRD-A01528713	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.12839
SYNGAP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.28487
BRD-K43654313	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.41065
BRD-K93993174	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.31911
multicellular organismal catabolic process	GO Biological Process Annotations 2015	1.0	null
FBXO3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.93969
ALMS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.21399
L3MBTL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.8433
all	GeneRIF Biological Term Annotations	1.0	null
colorectal	GeneRIF Biological Term Annotations	1.0	null
served	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-670	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
astrocytes	BioGPS Cell Line Gene Expression Profiles	-1.0	-0.927508
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-5083-01A-02R-1420-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary motor-sensory cortex (samples)_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.46011
small intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.091337
lymph node	HPA Tissue Protein Expression Profiles	-1.0	-1.2583
ParietalLobe	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.31354
seminal vesicle	HPA Tissue Protein Expression Profiles	1.0	0.98309
Trophectoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.943
B6Tert-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.912
endopeptidase activity	GO Molecular Function Annotations 2015	1.0	null
BRD-K96997646	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0312
receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.054309
Scoliosis, Isolated, Susceptibility To, 3	DisGeNET Gene-Disease Associations	1.0	null
malaria	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	1.14929
catabolic process	GO Biological Process Annotations 2015	1.0	null
BRD-K92144896	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.16895
multicellular organismal macromolecule metabolic process	GO Biological Process Annotations 2015	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-5507-01A-01R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
A704	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K76909981	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.09908
TMCC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.94306
abnormality of nitrogen compound homeostasis	GWASdb SNP-Phenotype Associations	1.0	0.38285
CSTF3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.69405
BRD-K03549232	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.32752
cardiovascular system disease	GWASdb SNP-Disease Associations	1.0	0.08108
POLR2F	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.98278
uterine adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.283899
BRD-K75807319	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.73716
CRCGN011_HEPG2_24H:O05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.68625
BRD-K90127029	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.48716
Benproperine (phosphate)_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0227387
MZ7-MEL	COSMIC Cell Line Gene Mutation Profiles	1.0	null
gnrh	GeneRIF Biological Term Annotations	1.0	null
pancreatic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.085323
BRD-K95323025	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.46445
BRD-K87141723	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.18708
laminin-5 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.375
UMC-11	GDSC Cell Line Gene Expression Profiles	1.0	1.6794
SMPD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.69444
THOC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.81179
BRD-K46003436	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.3364
primary motor cortex (area M1, area 4)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.2938
p003	GeneRIF Biological Term Annotations	1.0	null
verrucous carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.711183
Bronchoalveolar system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A25Y-01A-11R-A16W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
pocket	GeneRIF Biological Term Annotations	1.0	null
BRD-K06614664	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.72377
transmembrane	GeneRIF Biological Term Annotations	1.0	null
vascular endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.238706
BRD-K67348226	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.6357
catenin-TCF7L2 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.794
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.11818
plasma membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.16899
urinary tract	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
carbohydrate metabolism disease	GWASdb SNP-Disease Associations	1.0	0.311787
PBX3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.66666
posterior (caudal) superior temporal cortex (area 22c)_26 pcw_F_12949	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.05587
Prostate adenocarcinoma_PRAD_TCGA-M7-A724-01A-12R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
squamous epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.219928
SCMCRM2	DepMap CRISPR Gene Dependency	1.0	2.46383
Liver hepatocellular carcinoma_LIHC_TCGA-BC-A10Y-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Posterior polymorphous corneal dystrophy 3	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.302
BRD-K55815187	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.20393
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6165
Pyridoxine_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.0308462
posteroventral (inferior) parietal cortex_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.873487
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.9173
BRD-K12986423	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.37554
COQ10B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.01904
BRD-K52245873	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.96087
Kidney Chromophobe_KICH_TCGA-KO-8413-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-G9-6347-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Skin Diseases	CTD Gene-Disease Associations	1.0	2.88009
HCC1395	CCLE Cell Line Gene Expression Profiles	-1.0	-1.87771
HCE-4	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.172
syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.052973
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Idiopathic fibrosing alveolitis_Lung Tissue_GSE21369	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.49453
FGFR4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.53269
located	GeneRIF Biological Term Annotations	1.0	null
TFAP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.1524
Rectum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
CRCGN015_MCF10A_48H:G18	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.31702
Wholebrain	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.46597
SNU1544	DepMap CRISPR Gene Dependency	1.0	3.70808
Endomysium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.506
CCAR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.25266
BRD-K18101567	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.21195
controls	GeneRIF Biological Term Annotations	1.0	null
Malaria	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.746
Fetal Hemoglobin Determination	DisGeNET Gene-Phenotype Associations	1.0	null
BRD-K45964657	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.50695
BRD-K70302892	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.5166
more	GeneRIF Biological Term Annotations	1.0	null
ncoa_22072566_ly2_lof_human_gpl570_gds4095	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.309705
BRD-K86716312	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.53351
breast carcinoma in situ	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.455601
MDA-MB-134-VI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.898379
abnormality of the endocrine system	GWASdb SNP-Phenotype Associations	1.0	0.094557
BRD-K21982562	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.54601
MAFK	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.1047
BRD-K17107214	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.06234
Melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.17
CRCGN012_HEPG2_24H:O05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.42277
HCC1419	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.696677
CTCF	ENCODE Transcription Factor Targets	1.0	null
BXPC3	CCLE Cell Line Gene Expression Profiles	-1.0	-2.43021
TWIST1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.89627
BRD-K50413145	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.24242
MM1S	DepMap CRISPR Gene Dependency	1.0	6.62181
front	GeneRIF Biological Term Annotations	1.0	null
COLO775	CCLE Cell Line Gene Expression Profiles	-1.0	-1.69989
Miscarriage	DisGeNET Gene-Disease Associations	1.0	null
PMC7997806-41397_2020_194_MOESM2_ESM.xlsx-MAGMA_GENE_DBP_ALL-SYMBOL_DBP	Rummagene Transcription Factor Associations 2026	1.0	null
posteroventral (inferior) parietal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.65921
BDCA4+_DentriticCells	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.2639
EWS-ERG-20517297-CADO-ES1-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
disease of metabolism	GWASdb SNP-Disease Associations	1.0	0.110802
PCDH18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.00529
abnormality of metabolism/homeostasis	GWASdb SNP-Phenotype Associations	1.0	0.21393
glucose metabolism disease	GWASdb SNP-Disease Associations	1.0	0.311787
abnormalities of placenta or umbilical cord	GWASdb SNP-Phenotype Associations	1.0	1.08891
vagina	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.388535
KP-4	GDSC Cell Line Gene Expression Profiles	-1.0	-1.45792
timp4	GeneRIF Biological Term Annotations	1.0	null
HDAC1	ENCODE Transcription Factor Targets	1.0	null
esophageal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.344079
CRCGN015_MCF10A.TP53.M_24H:D03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.07394
BRD-K31883758	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.77339
lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066341
stromal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.685551
BRD-K43610632	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.97926
BRD-K73706189	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.30323
FOXP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0235
PMC2866657-pone.0010547.s003.xls-ESE3_corr-Genes_correlated_anticorrelated_to_ESE3_EHF	Rummagene Transcription Factor Associations 2026	1.0	null
COLO679	CCLE Cell Line Gene Expression Profiles	-1.0	-1.56467
Liver hepatocellular carcinoma_LIHC_TCGA-T1-A6J8-01A-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K29756429	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.8516
BRD-K47895166	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.49858
Diabetes Mellitus, Type 1	HuGE Navigator Gene-Phenotype Associations	1.0	null
vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.284253
BRD-K75703503	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.06793
CRCGN016_MCF10A.TP53.M_24H:P18	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.86633
SK-MM-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
USP6NL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.30615
PDCL3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.27392
Uterine Carcinosarcoma_UCS_TCGA-N9-A4Q3-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.6262
FOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7365
PSS008	DepMap CRISPR Gene Dependency	1.0	4.96054
BRD-K67626198	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.06243
Specific granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.575
BRD-K41135617	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	5.075
GSE186647,GSE217288_11_v_7_hnrnpc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
metallopeptidase activity	GO Molecular Function Annotations 2023	1.0	null
polymorphonuclear leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.223419
PMC6292558__F2	PFOCR Pathway Figure Associations 2024	1.0	null
BRD-K65780164	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.07202
BRD-K44328896	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.26499
BRD-K12271646	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.17578
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1743
Marimastat	DrugBank Drug Targets	1.0	null
across	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
proapoptotic	GeneRIF Biological Term Annotations	1.0	null
skin carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.348981
binding	GO Molecular Function Annotations 2015	1.0	null
cleavage	GeneRIF Biological Term Annotations	1.0	null
syndrome	GeneRIF Biological Term Annotations	1.0	null
patterns	GeneRIF Biological Term Annotations	1.0	null
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.91117
RABEP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.05023
disease	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	1.14929
Spontaneous Abortion	DisGeNET Gene-Phenotype Associations	1.0	null
BRD-K12879624	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.31578
SPIB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.6139
larger	GeneRIF Biological Term Annotations	1.0	null
BRD-K58787433	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.23361
Urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.049
Hydroxyurea_SHP-77	Tahoe Therapeutics Tahoe 100M Perturbation Atlas	-1.0	-0.033453
stratum spinosum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.295297
enilconazole-5538	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-J4-A67Q-01A-21R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K99210277	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.13534
contains	GeneRIF Biological Term Annotations	1.0	null
regulation of inflammatory response	GO Biological Process Annotations 2015	1.0	null
lymphoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070949
BRD-K42663371	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.16777
parasitic protozoa infectious disease	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	1.14929
NP8	DepMap CRISPR Gene Dependency	1.0	2.05791
transplant	GeneRIF Biological Term Annotations	1.0	null
Early Pregnancy Loss	DisGeNET Gene-Phenotype Associations	1.0	null
factor4	GeneRIF Biological Term Annotations	1.0	null
PK1	DepMap CRISPR Gene Dependency	1.0	2.69092
BRD-K46298074	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.33877
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8748
element	GeneRIF Biological Term Annotations	1.0	null
abnormality of the abdominal organs	GWASdb SNP-Phenotype Associations	1.0	0.079908
TestisSeminiferousTubule	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.949844