association	dataset	threshold value	standardized value
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3153
HTC-C3	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.04917
CAPAN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.960255
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.867236
SNUC2A	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50329
MDAPCA2B	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55907
SCLC-22H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20012
HCC89	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.987695
HARA	CCLE Cell Line Gene CNV Profiles	1.0	1.60797
KNS62	CCLE Cell Line Gene CNV Profiles	1.0	1.41197
Psoriasis vulgaris_Skin tissue_GSE14905	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.36093
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28804
U266B1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.93814
MEK_INHIBITION_GDS5029_279_human_SW480 KRAS-mutant colorectal cancer cell line - 16hours	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
T98G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.924779
CALU-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.850531
CA SKI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04971
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22147
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49231
HDMYZ	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68636
SNU-398	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.04917
CAOV3	CCLE Cell Line Gene CNV Profiles	1.0	2.34773
HCE-4	COSMIC Cell Line Gene CNV Profiles	1.0	2.0703
SBC5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.80072
NCI-H1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.893694
KPL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.824434
BICR 10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.23409
PCI-30	COSMIC Cell Line Gene CNV Profiles	1.0	2.0703
A549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00154
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.12404
OAW-28	COSMIC Cell Line Gene CNV Profiles	1.0	2.0703
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
SCH	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.04917
SW1463	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3788
BICR22	CCLE Cell Line Gene CNV Profiles	1.0	2.64688
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28804
KYSE-70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.84172
NCI-H520	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10852
TE441T	CCLE Cell Line Gene CNV Profiles	-1.0	-2.15639
NCI-H2196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17908
LB771-HNC	COSMIC Cell Line Gene CNV Profiles	1.0	2.0703
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40086
OVCAR-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.954491
DB	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33308
Type 1 diabetes mellitus_T lymphocyte_GSE10586	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-2.12371
HCC95	CCLE Cell Line Gene CNV Profiles	1.0	2.01289
PE/CA-PJ15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.69416
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22125
MAPK1_knockdown_145_GSE31912	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	1.24956
COR-L47	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15657
SNU-216	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46125
KYSE-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.93788
A-431	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.896518
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01267
NCI-H1734	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24419
NCIH650	CCLE Cell Line Gene CNV Profiles	-1.0	-1.77811
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.41879
G130	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.964437
STAT4	MotifMap Predicted Transcription Factor Targets	1.0	null
NCIH3255	CCLE Cell Line Gene CNV Profiles	1.0	1.60504
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.914964
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66552
H3255	COSMIC Cell Line Gene CNV Profiles	1.0	2.0703
A-375	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.964437
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.867503
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1223
KNS-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2987
GSS	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47398
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66552
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16105
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00154
SNU-719	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.76904
BICR18	CCLE Cell Line Gene CNV Profiles	1.0	1.72455
PIK3CA_mutant_27_GDS4053	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-2.08195
HT-144	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.980914
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.882294
SUIT2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.94803
NCI-H650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.71827
LUDLU1	CCLE Cell Line Gene CNV Profiles	1.0	1.40182
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30892
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.972892
HCC60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80191
SNU216	CCLE Cell Line Gene CNV Profiles	-1.0	-2.02564
JRA - Juvenile rheumatoid arthritis_Peripheral blood mononuclear cell_GSE7753	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.42345
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4347
CAL-85-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.0703
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33987
SNU1214	CCLE Cell Line Gene CNV Profiles	1.0	1.66539
OAW28	CCLE Cell Line Gene CNV Profiles	1.0	1.34195
NCI-H441	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.904406
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.903171
OVKATE	CCLE Cell Line Gene CNV Profiles	1.0	1.81257
TE6	CCLE Cell Line Gene CNV Profiles	1.0	1.82258
KYSE270	CCLE Cell Line Gene CNV Profiles	1.0	2.21066
TE-6	COSMIC Cell Line Gene CNV Profiles	1.0	2.0703
KDM4C_natural variation_GSE41040_588_human_fibroblasts fron neonatal foreskin	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.69416
IGROV-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29774
PANC0403	CCLE Cell Line Gene CNV Profiles	-1.0	-1.80605
COLO 679	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.59239
HCC2302	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.10101
G122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4347
SF539	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06288
RKN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855098
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24037
NCI-H2052	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00154
SNU899	CCLE Cell Line Gene CNV Profiles	1.0	1.3691
CAPAN-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.0703
GP2D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62772
PANC 04.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.995
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.904406
OAW28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.849633
BICR22	COSMIC Cell Line Gene CNV Profiles	1.0	2.0703
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
CCK81	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
RARA_KD_GDS4065_42_human_MCF-7	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
A388	COSMIC Cell Line Gene CNV Profiles	1.0	2.0703
NCIH1435	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32913
BFTC-905	COSMIC Cell Line Gene CNV Profiles	1.0	2.0703
TT	CCLE Cell Line Gene CNV Profiles	1.0	1.47627
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16105
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
G141	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02861
RERF-GC-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.995
HS746T	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58379
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.869698
NCI-H1304	COSMIC Cell Line Gene CNV Profiles	1.0	2.0703
YY1_KD_GDS3788_488_human_HeLa	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
BFTC-905	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.0084
DMS 53	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.924779
COLO679	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71838
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.903171
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25212
PA-TU-8988S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1223
SNU503	CCLE Cell Line Gene CNV Profiles	1.0	1.82091
NCIH209	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53837
MM.1S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08518
STAT1_KD_GDS4754_159_human_JURKAT	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
NCI-H810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.18787
NCI-H2172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14033
NCIH23	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5561
bladder	GTEx Tissue Gene Expression Profiles	1.0	1.04699
ABC1	CCLE Cell Line Gene CNV Profiles	1.0	1.58238
MDAMB436	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
LU-65	COSMIC Cell Line Gene CNV Profiles	1.0	2.0703
HCC2270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.924114
SNU-668	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.850531
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33987
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
enzalutamide_homo sapiens_gpl570_gse44905	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
IGROV1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.515
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22195
KYSE180	CCLE Cell Line Gene CNV Profiles	1.0	1.53517
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.964437
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11534
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1223
A-427	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31776
NCI-H2110	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03554
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37555
ISTMES2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42482
HPAFII	CCLE Cell Line Gene CNV Profiles	-1.0	-2.3514
OKAJIMA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.872541
RAMOS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.867236
VMRCLCP	CCLE Cell Line Gene CNV Profiles	1.0	1.95702
ABC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42283
MFE-280	COSMIC Cell Line Gene CNV Profiles	1.0	2.0703
RXF393	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.04917
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03554
SNU-398	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.10101
T47D	CCLE Cell Line Gene CNV Profiles	1.0	1.62858
RKN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36516
KYSE-180	COSMIC Cell Line Gene CNV Profiles	1.0	2.0703
NCI-H345	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.882294
HCC461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.924779
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4508
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
NCIH2342	CCLE Cell Line Gene CNV Profiles	1.0	1.6008
SNU182	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54592
LU65	CCLE Cell Line Gene CNV Profiles	1.0	2.90856
HS 746T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62988
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.904406
RERFGC1B	CCLE Cell Line Gene CNV Profiles	-1.0	-2.04543
SNU719	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33298
ATR_knockdown_140_GSE31912	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.0906
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49175