association	dataset	threshold value	standardized value
HSF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1184
VPS37B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.29379
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9254
Eye cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.925
SREBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.2512
GSK3B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.04133
Nucleus	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.9133
Tailbud stage	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.101
PMC7846764-41598_2021_81773_MOESM2_ESM.xlsx-b-Heart_AA_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
RPL23A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.64294
N-terminal protein N-methyltransferase activity	GO Molecular Function Annotations 2025	1.0	null
SCAF8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.93853
GNA13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.29105
CEP78	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.18919
MRPL47	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.5837
SNU-1076 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.231
PRDM6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.57811
GSE160077,GSE160084_3_v_0_bin1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
N-terminal protein acetyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.732
BYSL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.02563
werirb1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.032
SKA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.15494
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.442
RHEBL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.38168
IKZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.896
NEU3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.2469
Nkx3-2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.3884
MBD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.45836
OGFOD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.13265
TXNL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.26147
UQCRB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.49098
GSE120336_1_v_2_tamoxifen_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
EMC8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.29024
Organelle lumen	COMPARTMENTS Experimental Protein Localization Evidence Scores 2025	1.0	1.74
RPL5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.01366
GSE205316,GSE205317_0_v_1_nrip1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE210580_4_v_7_rag2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1574
ATG16L2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.34351
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3014
SNX4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.4352
Eukaryotic translation elongation factor 1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.645
GSE195559_2_v_4_notch1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SCAMP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.27197
EIF3G	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.55363
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3954
TMEM190	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.37952
LGI4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.47105
GSE86507,GSE86509_0_v_8_hoxb7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ETV3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.56439
CHCHD10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.02243
GSTO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.26856
GSE157555,GSE157556_0_v_6_foxa2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
496100375_FWM_dementia_no TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.37096
TRIM13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.57568
C5orf24	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.33459
496100659_PCx_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.56007
Septum pellucidum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.06
HAND2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8945
FOXO1::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.7643
GSE242555_1_v_0_fn3k_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Larval brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.802
Six4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.533
PFDN6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.46146
TBX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.539
GSE210580_3_v_2_rag2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
IRF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2059
HBA2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.60802
ZNF35	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.9403
MED17	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.17638
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.6055
RNFT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.05905
Yy1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.7083
SLC39A8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.18174
ACTL6A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.03895
TIMM44	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2015
Endocrine gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
CEP43	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.49298
POU5F1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4638
SSR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.53914
Lef1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.4847
ASPRV1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.52734
ARPC4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.25912
Pericardial fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.876
PPP3R1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.11573
Nucleolus	COMPARTMENTS Experimental Protein Localization Evidence Scores 2025	1.0	1.74
GSE88819_11_v_4_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PRPF3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.89215
USP48	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.38477
Throat	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
NCBP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95517
RPL19	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.07444
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.858
ZNF207	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.25239
SEPTIN9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.20792
TNFSF11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.69008
TBX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9895
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.9144
DESI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.29771
GSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3001
PMC10123531-NIHMS1874945-supplement-Table_S6.xlsx-SOX2_BCAT_cobound_peaks-Gene_Name_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
PMC12612227-41523_2025_836_MOESM1_ESM.pdf-1-POU4F1_POU4F1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE153443_1_v_2_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
TMEM106A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.18725
EOMES	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6916
TMED3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.3985
PRPF8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.49453
GLMN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.58443
UBR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.15938
TBR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8638
PPP1R2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.83196
Ubiquinone biosynthesis complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.406
GSE176008_8_v_1_azacitidine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NFU1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.46451
Cardiac tube	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.724
BCL6B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.686
GCM2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.56853
RBM33	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.16694
GSE195559_8_v_4_notch1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Site of double-strand break	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.835
TPRG1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.21875
PLEKHJ1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.03258
SLC25A51	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.92592
FAM234A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.8363
Male-pattern baldness	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.9
Bcl11b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.0027
PPP1R26	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.66626
MPP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.80937
SMC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.10383
GSE152699,GSE152723_0_v_1_vemurafenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
NR2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9115
GSE189789_0_v_1_oridonin_human	RummaGEO Drug Perturbation Signatures	1.0	null
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.1914
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1282
FUT4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.66544
POU3F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8213
SUSD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.34585
NKX6-1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.9659
RPS19BP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.76854
PMC12616242-can-24-3452_supplementary_table_s4_suppst4.xlsx-EWSR1FLI-KDM6A_genes-Genes_associated_to_EWSR1_FLI1-KDM6A_peaks_in_A-673_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
FOXJ2::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.0441
RACK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.14582
KCNK12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95026
ETV2::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8443
NUPR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.33127
NFIB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.74703
CTPS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.45451
KLK6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.13367
Stereocilia tip link	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.842
nucleus	GO Cellular Component Annotations 2025	1.0	null
FOXO1::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.8401
Arterial endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.737
PMC8444148-NIHMS1529754-supplement-1529754_Tab_S2.xlsx-downregulated_in_ATF4OE-RNA-seq_of_C3_ATF4_OE_and_C3_neurons_ATF4	Rummagene Transcription Factor Associations 2026	1.0	null
CAPG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.04598
PCDHB16	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.50949
SUSD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50538
THAP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.29283
NIPA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.30443
PMC4266008-mmc3.xlsx-iPS-MSC_vs_MSC-Unnamed_24_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
BZW2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.74832
PEG10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.00989
GXYLT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.28162
non-membrane-bounded organelle	COMPARTMENTS Experimental Protein Localization Evidence Scores 2025	1.0	1.74
ZNF607	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.08496
Sacrospinalis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.96
NFATC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.8146
PMC8423434-mmc7.xlsx-SOX2_Primed-Genes_n_3042_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
PMC12356745-12015_2025_10896_MOESM2_ESM.pdf-481-ENSG00000143171_RXRG	Rummagene Transcription Factor Associations 2026	1.0	null
Hypobranchial	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.261
POLM	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.47274
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1096
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6089
TBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4129
Gill filament	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.526
USP38	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.78711
HIC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.06814
PCMTD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.51827
TRAPPC4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.20013
Branchial arch	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.02
SGTA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.34709
CDC5L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.63376
ESRRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9513
STXBP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.2384
Organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
GSE143782_7_v_11_calcitriol_human	RummaGEO Drug Perturbation Signatures	1.0	null
PROX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6691
GSE195514_0_v_1_stk25_human	RummaGEO Gene Perturbation Signatures	1.0	null
TIMM23	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35715
GPR108	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.42444
FICD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66883
GSE188382_2_v_0_sirt5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
JARID2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.33441
PMC12000322-41419_2025_7601_MOESM9_ESM.xlsx-H3122-AR_somatic_filtered_PASS-version_2_4_AR	Rummagene Transcription Factor Associations 2026	1.0	null
MDN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.26734
MAU2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.39263
ZNF724	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.02283
GSE105169,GSE105175_0_v_1_dhx36_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Pacemaker cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.817
POU2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.6093
MARCKSL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42271
KLF14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.76331
PMC12000322-41419_2025_7601_MOESM9_ESM.xlsx-H3122-AR_somatic_filtered_PASS-Unnamed_60_AR	Rummagene Transcription Factor Associations 2026	1.0	null
496100330_PCx_possible Alzheimer's disease_no TBI_100+_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.50203
Longissimus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.997
TBX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2062
496100530_FWM_dementia_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.84288
GSE242199_2_v_11_ntrk2_human	RummaGEO Gene Perturbation Signatures	1.0	null
KLHL26	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.50175
TECPR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.15944
GSE130217_5_v_2_sesn2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
SP5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.85325
TDRD7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.57512
TBX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2009
MRPS10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.86335
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.3598
SPRYD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.02079
GSE191015_1_v_3_gsdmb_human	RummaGEO Gene Perturbation Signatures	1.0	null
Oral apparatus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.901
GSE127261_1_v_2_ezh2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
AP5M1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82543
tissues, cell types and enzyme sources	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
TIPIN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.45584
PMC10247733-41408_2023_863_MOESM2_ESM.pdf-288-MESP2_MESP2	Rummagene Transcription Factor Associations 2026	1.0	null
DUSP12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.51126
CDKN2D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.18954
Kidney - Cortex	GTEx Tissue Gene Expression Profiles 2023	1.0	4.5
TBX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4726
EIF3F	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.15344
Pronephric tubule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.55
POU2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.37
CENPJ	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.62373
GSE160083,GSE160084_2_v_3_tamoxifen_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
GADD45G	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.57743
ae1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.606
ADCY6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.09601
GSE143782_3_v_11_calcitriol_human	RummaGEO Drug Perturbation Signatures	1.0	null
UTP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.25922
POMGNT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.18432
MGA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4311
TRIM28	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.38454
ML-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.163
Claustrum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.951
GSE160083,GSE160084_2_v_0_tamoxifen_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
POU3F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.0354
Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.652288
ZNF354C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2449
SCN4A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.18705
ETV5::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.1743
DOLK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.19469
GSE142684_4_v_5_prdm16_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE158834_10_v_3_palmitic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Gas bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.637
MALL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.26988
GSE88819_6_v_2_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
CETN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00945
162 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.708
POU2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.034
Pericardium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.057
CEP152	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.09932
NECTIN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.11466
GSE211955_1_v_0_jmjd4_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PANO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.77814
PPP6R1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32277
CREM	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9511
Prdm15	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.2204
SPCS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.7594
NFKBIA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.20978
HMGN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.04304
EPHA2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-4.1445
PSMC4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61534
Auditory cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.682
CTPS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.1974
Rad51B-Rad51C-Rad51D-XRCC2 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.651
PDSS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.69042
SIN3A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.47544
MYO9B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.46695
GSE176008_7_v_2_azacitidine_human	RummaGEO Drug Perturbation Signatures	1.0	null
PMC12356745-12015_2025_10896_MOESM2_ESM.pdf-32-RXRG_RXRG	Rummagene Transcription Factor Associations 2026	1.0	null
NOXO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.55283
Auditory capsule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.811
PMC8379183-41467_2021_25326_MOESM9_ESM.xlsx-SALL4_unique_peaks-Unnamed_15_SALL4	Rummagene Transcription Factor Associations 2026	1.0	null
Intracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
RPL35A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.79003
GSE152937_12_v_7_slc16a13_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Gill arch	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.658
PMC6167382-41467_2018_6258_MOESM4_ESM.xlsx-TEAD-associated_GSC-Specific_UP-Nearest_Ensembl_GSC	Rummagene Transcription Factor Associations 2026	1.0	null
NUCKS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.06797
Cardinal vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.763
GSE242555_1_v_0_nicotinamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Laryngeal squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.797
GSE210383_0_v_1_trim71_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
ZNF100	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.91008
GSE84148,GSE96938_3_v_1_nrros_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
UPF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.2626
PMC10123531-NIHMS1874945-supplement-Table_S3.xlsx-DAY1_SOX17_peaks-Gene_Name_SOX17	Rummagene Transcription Factor Associations 2026	1.0	null
NR2C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.7795
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8534
EEF1AKMT3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.88869
PMC8891017-41586_2022_4394_MOESM4_ESM.xlsx-ST6_-_MAF_enrichment-Unnamed_4_MAF	Rummagene Transcription Factor Associations 2026	1.0	null
Endostyle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.751
LDHB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.77818
GSE125219,GSE125221_4_v_2_arid1a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Intracellular non-membrane-bounded organelle	COMPARTMENTS Experimental Protein Localization Evidence Scores 2025	1.0	1.74
MYF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7617
GSE154350_1_v_0_ascl2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SNAI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.07655
NEUROG2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.69103
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2424
CHAC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.0067
RBM23	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99125
STON1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.02634
Purkinje layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.754
Whole body	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Posterior cardinal vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.814
colo320hsr	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.755
PMC11328671-jitc-12-4-s003.pdf-229-MEF2BNB-MEF2B_MEF2B	Rummagene Transcription Factor Associations 2026	1.0	null
PDCD5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.71534
SOX3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.41376
Sinus node	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.891
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1072
496100334_PCx_probable Alzheimer's disease_no TBI_79_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.14048
Trunk	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
ZNF528	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.3734
GSE80446_2_v_1_anakinra_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
patu8902	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.634
GHITM	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.49951
TMEM231	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.25074
MEIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.2643
496100583_PCx_dementia_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.83707
EBF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.40956
BCL6B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.92327
GSE138741,GSE138743_0_v_1_lin28b_human	RummaGEO Gene Perturbation Signatures	1.0	null
TOR1AIP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.25874
MT1X	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.25142
STAC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.27874
KIF3B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.57961
UBE2E1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.03056
IRF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9606
G2E3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.35286
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9062
PARP15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.37287
POU5F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4367
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3916
Inner nuclear layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.956
ERF::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.8194
RTF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.21441
Retinal stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.793
tRNA (m7G46) methyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.959
PMC8494348-pone.0257161.s002.xlsx-only_OXT_NOT_ext-OXT_ext-Gene_Name_NR4A2	Rummagene Transcription Factor Associations 2026	1.0	null
H2AB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.28638
GSE240468_3_v_2_nfyc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
TIFA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.24654
INKA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.85509
CLDN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.45708
GSE226770_3_v_6_atrx_human	RummaGEO Gene Perturbation Signatures	1.0	null
membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
GSE130217_0_v_3_sesn2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PLEKHO2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.46508
PMC9385264-NIHMS1828071-supplement-8.xlsx-AR-gene_symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
TBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1119
Hatching gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.673
PFKFB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.05675
GSE240386,GSE242143_1_v_4_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
SPHK2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.77761
Gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
RNA N6-methyladenosine methyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.008
OVOL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.13265
S-adenosylmethionine-dependent methyltransferase activity	GO Molecular Function Annotations 2025	1.0	null
SLC10A4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.17129
ATG9B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.60037
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8964
Waist-to-hip ratio adjusted for BMI	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.630103
JPT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.58441
CENP-A containing nucleosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.033
LUC7L2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.39472
PRIM2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.19199
Tail bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.897
496100384_HIP_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.42732
Swim bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.642
SSB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.55587
PSMD9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.26768
Thyroid gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
NBEAL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.64807
LETM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.03235
CDH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.16319
C8G	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.13904
KRBA2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.24491
TRIM25	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.19522
GINS4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.83189
GSE131649_6_v_8_hemin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ZCCHC14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50816
MPHOSPH10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.11138
ERF::SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.259
HBS1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.67484
RPS5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.05839
HES7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.9032
GAPVD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42448
NR3C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.6096
NUBP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.81381
CPHXL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.53158
ITGA2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.19542
ERCC6L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.24832
Atrial fibrillation	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.652288
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.9918
GSE216043_7_v_6_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Nuclear lumen	COMPARTMENTS Experimental Protein Localization Evidence Scores 2025	1.0	1.74
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.6489
BPNT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.19682
496100566_FWM_no dementia_no TBI_82_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.67337
PMC7581777-41419_2020_3029_MOESM6_ESM.xlsx-MNX1_ChIP-Symbol_MNX1	Rummagene Transcription Factor Associations 2026	1.0	null
NPIPB11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.93456
KIAA1522	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.89457
RPL23	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.64262
GSE122425_1_v_0_nsun2_human	RummaGEO Gene Perturbation Signatures	1.0	null
BHLHE41	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1171
ETV5::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.8465
GSE145915_5_v_4_pcm1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Tail fin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.211
PRPF4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.3922
CDK12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.60087
CCDC177	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.11927
THUMPD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11198
Nr2e1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.1448
496100647_TCx_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.06799
Nkx-2.5 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.194
Lateral geniculate nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.724
Longissimus thoracis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.063
GSE208350_0_v_1_fgfr1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PRR36	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.14779
Brain - Substantia nigra	GTEx Tissue Gene Expression Profiles 2023	1.0	5.19707
GSE169571_3_v_2_dexamethasone_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Translation initiation complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.923
TGIF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.38374
GSE130217_5_v_3_sesn2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PRR29	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.47646
GSE131649_6_v_5_hemin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
RCCD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.78495
Stat5b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.7236
GSE164874_5_v_3_prednisolone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
496100535_FWM_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.36134
CLCN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.00248
TAF13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.04603
MAFG::NFE2L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.6177
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.0936
Fin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.526
FOXP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.04559
GSE138001_2_v_4_rorb_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
CHAF1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.00315
PDPK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.70734
GSE174498,GSE174500_0_v_8_asparaginase_human	RummaGEO Drug Perturbation Signatures	1.0	null
H1-0	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11607
DHDDS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.38567
ZNRF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.53396
Utricle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.596
496100306_FWM_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.534
GSE242199_9_v_11_ntrk2_human	RummaGEO Gene Perturbation Signatures	1.0	null
GBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7375
PSMD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.41353
THAP12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.28656
Neck	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
LYRM7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.84484
IGFBP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.53914
ERF::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.4775
RORA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.8267
EOMES	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.65692
Adrenal gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
ZNF836	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.66064
GSE158834_2_v_3_palmitic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
OBSL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.92711
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.5527
PMC12000322-41419_2025_7601_MOESM9_ESM.xlsx-H3122-AR_somatic_filtered_PASS-Unnamed_47_AR	Rummagene Transcription Factor Associations 2026	1.0	null
GSE142684_4_v_6_prdm16_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE191015_0_v_3_gsdmb_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE190186,GSE190188_0_v_10_apoe_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.9785
CENP-A containing chromatin	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.014
chromosome, centromeric core domain	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.014
GET1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.68585
TRAP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.50119
GSE102467_3_v_2_pazopanib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
MFHAS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.43123
IGHMBP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.36135
BCL6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.2756
HOXA2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.13421
DELE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.09218
HOXC13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.06866
BNC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.4093
GSE247764_0_v_2_nell2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
TIMP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.54514
ERCC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80505
LIPT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.57462
FARSA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.37292
GSE153443_1_v_3_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
UBXN2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.02897
PET100	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.10244
Lateral geniculate body	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.675
LHX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.0285
CHD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.02374
FDFT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2566
N-terminal protein amino acid methylation	GO Biological Process Annotations 2025	1.0	null
GSE205976,GSE205978_1_v_4_cep83_human	RummaGEO Gene Perturbation Signatures	1.0	null
Flexor digitorum longus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.679
MAF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.23785
NR6A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.8731
Retinoblastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.937
GON4L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.76766
RASSF4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.76121
BEX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.36886
PMC8423434-mmc7.xlsx-SOX2_HENSM-Genes_n_2733_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
ESPN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.00622
GSE224096_2_v_0_cocaine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.438
Pericardial mesothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.291
APOE	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.88287
TBC1D20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.04308
MLF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.76863
LAMC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.45232
Mitochondrial inner membrane assembly complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.725
EMX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.6342
Deep fiber	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.262
CCNH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.8181
496100359_PCx_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.51041
PM20D2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.34022
ZC3H11C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.18567
HSF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.9075
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0558
PDIK1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.23045
Pancreatic duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.817
AURKA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.28113
DHX29	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.45078
Intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
NatC complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.607
TLDC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.03795
FAM241B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.64613
PCTP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.42512
ZNF324	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.6736
CFAP298	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.50696
PAX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5151
PHAX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.15301
ASAH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.29467
UBE2Z	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.69642
R3HDM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.23111
GSE205163,GSE205164_5_v_7_znf808_human	RummaGEO Gene Perturbation Signatures	1.0	null
MRPL53	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.0188
RBM42	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.04213
TBX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.94722
Ventral aorta	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.344
CDC6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57379
PCDHB9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.37438
STAT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9402
MICA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.17006
Laryngeal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.517
PMC10123531-NIHMS1874945-supplement-Table_S7.xlsx-SOX17_BCAT_4TCFKO_peaks-Gene_Name_SOX17	Rummagene Transcription Factor Associations 2026	1.0	null
SLC12A7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.70302
MED6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42717
GSE158834_1_v_13_palmitic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE100863,GSE100864_2_v_1_tet2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.337
Rarb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	49.5857
HELT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.53669
GSE188721_3_v_4_mesp1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Creb5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.4865
Neuromast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.105
MAF::NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.289
PMC12518476-10067_2025_7574_MOESM8_ESM.xlsx-Sheet1-Up_regulated_DEGs_of_KD_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Aortic arch	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.585
GAPDHS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.31373
GSE242199_9_v_5_ntrk2_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE226408_1_v_0_inpp4b_human	RummaGEO Gene Perturbation Signatures	1.0	null
Dorsal fin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.757
HSF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.573
H2BC12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.5741
GSE88819_11_v_8_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
N-terminal protein amino acid modification	GO Biological Process Annotations 2025	1.0	null
FOXO1::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.6984
EFEMP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.50445
GREB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.80087
MED13L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.21698
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.7027
HOXB7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.9607
ZIM3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.6134
GSE195559_6_v_4_notch1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Inner kinetochore	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.907
TSPAN13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.19669
GSE228125_2_v_1_ptafr_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
NPTXR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2901
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3012
STAG2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42229
ZFAND2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.39245
GFI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.24138
TBX20	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5771
Pectoral fin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.633
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.5951
GSE264621_1_v_3_secretin_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZNF579	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.03856
Zona incerta	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.907
LACTB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.33408
GSE159728,GSE159730_0_v_1_prdm16_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE152937_6_v_5_slc16a13_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
CEP120	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.65086
POLR2G	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.08992
Ceratobranchial	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.601
ARAF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.26561
GSE158834_1_v_13_palm_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ACACA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.6588
FLI1::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.8202
JUNB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.51849
PMC10011543-41419_2023_5707_MOESM4_ESM.xlsx-genes_with_unique_SNP-F5-Pneo-r__CIC-1n_h-r__CIC-2n_h-r_CIC	Rummagene Transcription Factor Associations 2026	1.0	null
MRPL38	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.43855
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.166
IRF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.75
GSE190186,GSE190188_8_v_5_apoe_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Nfat5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.8483
TIMM17B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75963
GTF2H3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.4971
CREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6812
GSE174406_2_v_1_lin28b_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PTGER1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.70273
INTS13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-4.20359
Nkx3-1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.9405
NSFL1C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.30178
NDUFS5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.38609
GSE136627_3_v_1_hdac4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
NGDN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.13877
Muscle thin filament tropomyosin	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.25
DHRS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.28
ZNRF3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.14844
Stereocilia coupling link	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.837
SMC6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.92969
Intracellular organelle lumen	COMPARTMENTS Experimental Protein Localization Evidence Scores 2025	1.0	1.74
GSE165548_2_v_5_gemcitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
RALGPS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61236
GSE247764_5_v_2_nell2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE133070_3_v_1_prss1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
496100430_PCx_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.09793
Posterior adductor muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.971
496100529_HIP_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.60651
SNRPC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.31644
GSE242199_6_v_11_ntrk2_human	RummaGEO Gene Perturbation Signatures	1.0	null
PMC11749115-loae020_suppl_Supplementary_Table_S2.xlsx-CHOP-high-gene_DDIT3	Rummagene Transcription Factor Associations 2026	1.0	null
E2F7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22284
GSE144231_3_v_5_cxcr2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
mRNA editing complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.984
GSE147613_1_v_0_cisplatin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Viscus	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PMC12616242-can-24-3452_supplementary_table_s4_suppst4.xlsx-EWSR1-FLI1-KDM6B_genes-Genes_associated_to_EWSR1_FLI1-KDM6B_peaks_in_A-673_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
RPS13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.16154
H2AC6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.29874
ANKLE2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.02011
PMC12549544-mmc2.xlsx-AA_D1_VS_D7-Name_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
NatA complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.952
PMC8379183-41467_2021_25326_MOESM9_ESM.xlsx-SALL4_unique_peaks-Unnamed_14_SALL4	Rummagene Transcription Factor Associations 2026	1.0	null
OLFML2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32325
ZSCAN32	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.08678
HSFX3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.38037
GSE95543_1_v_0_klhl41_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
alpha3-beta1 integrin-basigin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.755
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.184
Hnf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.8062
LAGE3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15795
BLOC1S3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.74497
membrane-enclosed lumen	COMPARTMENTS Experimental Protein Localization Evidence Scores 2025	1.0	1.74
MLH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22488
LTO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.98812
RBFA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.57277
NRL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5009
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2025	1.0	null
ZMYND8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.16843
TRIM41	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2362
RORC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7483
PMC12048643-44318_2025_409_MOESM3_ESM.xlsx-regulonTargets-FOS_FOS	Rummagene Transcription Factor Associations 2026	1.0	null
496100641_PCx_no dementia_no TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.36998
HIVEP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.25862
ESRRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7251
PABPC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.21975
GSE146894_3_v_8_hira_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
ETV2::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.6837
Atrioventricular node	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.831
Pelvic fin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.565
GSE86507,GSE86509_7_v_10_hoxb7_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
CYP51A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.92955
ATOH7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.56848
NatB complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.581
Prdm4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.989
PTPN11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.07299
FOXO1::ELK3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.327
GSE169571_0_v_2_dexamethasone_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3697
ZBTB8A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.61313
PXYLP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.79417
GSE210580_3_v_11_rag2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
UNK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.12194
el2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.024
Ventral striatum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.743
MPHOSPH8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.34697
SNPH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.44349
MAFK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.49008
EBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.534
PMC10243915-uxad037_suppl_supplementary_table_s1a.pdf-154-ZBTB43_ZBTB43	Rummagene Transcription Factor Associations 2026	1.0	null
POU3F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.6731
ACADS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.72714
GSE152937_12_v_1_slc16a13_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
UBE3B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.65439
protein methylation	GO Biological Process Annotations 2025	1.0	null
496100557_TCx_no dementia_TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.08074