association	dataset	threshold value	standardized value
Hnf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.0657
GATA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1913
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
CAL12T	CCLE Cell Line Gene CNV Profiles	1.0	1.34272
signaling receptor activity	GO Molecular Function Annotations 2015	1.0	null
H4K20me1_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.956307
POU3F2-20337985-501MEL-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Alx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	47.0788
LS	DepMap CRISPR Gene Dependency	1.0	3.62679
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2438
Prostate adenocarcinoma_PRAD_TCGA-EJ-7331-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-7745-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BSX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9562
PAX6	ChEA Transcription Factor Targets	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-FG-A4MT-02A-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2673
COV644	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81406
NCIH2171	CCLE Cell Line Gene CNV Profiles	1.0	2.73536
PAX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.4484
FLI1::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5244
Olfactory receptor	InterPro Predicted Protein Domain Annotations	1.0	null
Signal Transduction	Reactome Pathways 2014	1.0	null
NCI-H1650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.58138
POU3F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7126
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.0021
NR4A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7128
DMS79	CCLE Cell Line Gene CNV Profiles	1.0	1.4149
OVMANA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.834017
dorsolateral prefrontal cortex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.17515
PBX1	ChEA Transcription Factor Targets	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4843-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC2998	COSMIC Cell Line Gene Mutation Profiles	1.0	null
dorsolateral prefrontal cortex_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.87045
ventrolateral prefrontal cortex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.891101
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.1886
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39381
Hmga1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	134.625
Sensory Perception	Reactome Pathways 2024	1.0	null
Six3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	34.8903
SOX8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.172
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826464
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	86.2726
Hoxd13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.9905
pancreas	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.46784
EBNA2-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
striatum_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.14474
PMC7244323-elife-55325-supp3.xlsx-Haapaniemi_TP53-KO-Gene_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
RBBP5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66394
E2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3562
PMC7244323-elife-55325-supp3.xlsx-This_paper_TP53-KO-Gene_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
SNU-C5	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Signaling by GPCR	Reactome Pathways 2014	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-7314-11A-01R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1174
NKX6-1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1705
VAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4492
ETV2-25802403-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
HOXD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4618
Hmx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	44.1974
DMS 53	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.13066
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4803-01A-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.872
SW684	COSMIC Cell Line Gene Mutation Profiles	1.0	null
TE14	CCLE Cell Line Gene CNV Profiles	1.0	1.96276
Nr2e3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	50.2174
plasma membrane	GO Cellular Component Annotations 2015	1.0	null
detection of chemical stimulus involved in sensory perception of smell	GO Biological Process Annotations 2015	1.0	null
NFATC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.8909
salivarygland	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	2.09859
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
VMRCRCZ	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44486
CLDN18_KO_GDS4961_28_mouse_whole lung tissue	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
amygdaloid complex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.58604
g-protein coupled receptor activity	GO Molecular Function Annotations 2015	1.0	null
Stat5a::Stat5b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.4115
Nfat5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	43.3146
496100429_TCx_no dementia_TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	11.5401
dorsolateral prefrontal cortex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.1273
YY1	ChEA Transcription Factor Targets	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
HOP-92	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21667
HOXB6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4362
PMC7244323-elife-55325-supp3.xlsx-Noordermeer_TP53-KO-Gene_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
HT-115	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
PAX6-23342162-BETA-FORBRAIN-LENS-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
MDAMB134VI	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.731006
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.956307
integral component of membrane	GO Cellular Component Annotations 2015	1.0	null
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.062
Kidney renal papillary cell carcinoma_KIRP_TCGA-AL-3467-01A-02R-1351-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.945197
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.2699
TE10	CCLE Cell Line Gene CNV Profiles	1.0	1.92907
NCIH2052	DepMap CRISPR Gene Dependency	1.0	3.22576
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.1036
PHF8-20622854-HELA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
E2F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.497
striatum_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.03429
Nfatc2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.1599
NCI-H2369	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21928
FOXG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8472
cerebellar cortex_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.25748
SW1710	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36158
H3K9me3_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
nrf1_22586274_liver_lof_mouse_gpl4134_gse35124	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.050955
ATM_KD_GSE54268_662_human_MCF-10A	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Irf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	121.166
HCC1171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.81252
BICR 78	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01863
LHX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5582
NCI-H2009	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02338
LS123	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
POU5F1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8877
NCI-H2171	COSMIC Cell Line Gene CNV Profiles	1.0	2.76305
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.922321
RERF-LC-SQ1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
cerebellum_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.874979
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01863
PPARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.7857
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.0106
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4977-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JHOM1	CCLE Cell Line Gene CNV Profiles	1.0	1.59735
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1622
Lhx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.9648
dorsolateral prefrontal cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.1996
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1204
IRF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.884
Expression and translocation of olfactory receptors	Reactome Pathways 2024	1.0	null
primary auditory cortex (core)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.916827
FOXE1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.9149
Dmrt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.3055
regulation of biological process	GO Biological Process Annotations 2015	1.0	null
primary auditory cortex (core)_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.9059
ventrolateral prefrontal cortex_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.850439
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.1853
HOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.9868
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.8224
Dlx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	47.2939
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.997413
Stat2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	74.0947
A-Vietnam-1203_CIP048_RG4-2004(H5N1)PB2-627E_4day-MOI-10^4_None_GSE43301	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.85935
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7911
BICR22	COSMIC Cell Line Gene Mutation Profiles	1.0	null
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878819
BCL6-27268052-CHIP-SEQ-BCELLS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.6916
posteroventral (inferior) parietal cortex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.00063
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07023
RBPJ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5425
CAPAN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32602
EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3005
HEP G2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.868936
FU97	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-G9-6347-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.0547
amygdaloid complex_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.32288
dorsolateral prefrontal cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.830389
hippocampus (hippocampal formation)_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.918742
HOXA7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.3728
Prostate adenocarcinoma_PRAD_TCGA-HC-7210-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ESRRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8595
HOXD11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3268
SPIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.916
SOX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8306
anterior (rostral) cingulate (medial prefrontal) cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.49292
posteroventral (inferior) parietal cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.88337
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-VS-A8Q8-01A-11R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-4740-01A-01R-1436-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GATA3-21878914-MCF-7-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NCI-H2461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962779
JAK2_activemutant_178_GSE44961	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.64974
HT29	DepMap CRISPR Gene Dependency	1.0	10.9389
Stat6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	70.6328
POU6F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4928
Adenoid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.826
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.97434
hippocampus (hippocampal formation)_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.23742
cervix uteri	GTEx Tissue Gene Expression Profiles	1.0	1.40197
dorsolateral prefrontal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.25748
CSB-26484114-CHIP-SEQ-FIBROBLAST-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Lhx8	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.0777
membrane part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
ERG-20517297-VCAP-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.887444
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.2112
anterior (rostral) cingulate (medial prefrontal) cortex_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.03429
HCC1171	CCLE Cell Line Gene CNV Profiles	-1.0	-1.78955
posterior (caudal) superior temporal cortex (area 22c)_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.03178
Brain Lower Grade Glioma_LGG_TCGA-TM-A7CF-02A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.3987
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6624
FOXO6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8445
ZNF558	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	151.847
NR2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9211
CTCF	ENCODE Transcription Factor Targets	1.0	null
molecular_function	GO Molecular Function Annotations 2015	1.0	null
Olfactory Signaling Pathway	Reactome Pathways 2024	1.0	null
A253	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Nr5a1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	44.3389
membrane	GO Cellular Component Annotations 2015	1.0	null
ESRRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9984
MM.1S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56836
FOSL1::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4495
anterior (rostral) cingulate (medial prefrontal) cortex_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.947327
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.51998
mast cells	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.866632
Nkx3-2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.5824
GATA5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.3531
POU3F2-20337985-501MEL-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
EBNA2-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
SNU1105	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37972
COLO800	DepMap CRISPR Gene Dependency	1.0	2.96618
SOX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0395
BT20	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.23545
SH10TC	DepMap CRISPR Gene Dependency	1.0	3.63283
NKX6-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.419
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A6GZ-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11629
HOXA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.9991
FOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7515
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.923365
intrinsic component of membrane	GO Cellular Component Annotations 2015	1.0	null
TBK1_druginhibition_188_GSE53658	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	1.18304
Sarcoma_SARC_TCGA-X6-A7WB-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NR4A2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8788
H3K27me3_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-E7-A7PW-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cell surface receptor signaling pathway	GO Biological Process Annotations 2015	1.0	null
Lef1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	57.4376
BT-474	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.92834
SATB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.019
primary auditory cortex (core)_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.6671
KNS81	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50933
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1204
LBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6459
POU1F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.4189
HOXD8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8595
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.956307
Brain Lower Grade Glioma_LGG_TCGA-S9-A7IY-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Ovarian mucinous neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.348
NCI-H2171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7001
Tbx6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	48.0767
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2652
primary motor-sensory cortex (samples)_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.834969
NCI-H526	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58152
JURLMK1	DepMap CRISPR Gene Dependency	1.0	2.23044
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.6438
Sox6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	38.5622
BC-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ZNF85	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.589
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4900-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826464
SNU-1040	COSMIC Cell Line Gene Mutation Profiles	1.0	null
H3K9me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-AS-3777-01A-01R-0864-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9181
nr2c2_20864514_liver_1yo_lof_mouse_gpl4134_gse21903	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.168866
Arx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.717
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8611
ZNF410	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.9695
Uveal melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.069
PECAPJ34CLONEC12	CCLE Cell Line Gene CNV Profiles	1.0	1.46286
TBR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8589
HCC1419	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.616067
NCIH1650	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61495
regulation of cellular process	GO Biological Process Annotations 2015	1.0	null
NoRC complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.794
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
primary auditory cortex (core)_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.848173
769-P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.58138
detection of stimulus	GO Biological Process Annotations 2015	1.0	null
BT474	CCLE Cell Line Gene CNV Profiles	1.0	1.51832
LY2	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.745005
ETV2::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3289
olfactory receptor activity	GO Molecular Function Annotations 2025	1.0	null
olfactory receptor activity	GO Molecular Function Annotations 2015	1.0	null
molecular transducer activity	GO Molecular Function Annotations 2015	1.0	null
Foxj2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	46.2751
ZBTB17	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8154
T3M10	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44723
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878819
Uveal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.067
BRCA1	JASPAR Predicted Transcription Factor Targets	1.0	null
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10886
VP229	DepMap CRISPR Gene Dependency	1.0	2.51365
KDM5A	ENCODE Transcription Factor Targets	1.0	null
inferolateral temporal cortex (area TEv, area 20)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.05066
CAL-12T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.63864
PA1	DepMap CRISPR Gene Dependency	1.0	10.9968
HMY1	DepMap CRISPR Gene Dependency	1.0	4.0033
CAL851	CCLE Cell Line Gene CNV Profiles	1.0	2.7587
HUH-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11629
VMRCRCW	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81694
Congenital fibrosis of the extraocular muscles	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.422
PMC12019518-ao5c02459_si_002.xlsx-Table_S3-Table_S3_Screening_of_genes_that_are_commonly_upregulated_in_cells_on_stiff_substrate_and_down-regulated_by_KD_of_UBE2A_B_AR	Rummagene Transcription Factor Associations 2026	1.0	null
DMS53	CCLE Cell Line Gene CNV Profiles	-1.0	-1.9595
HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.5299
anterior (rostral) cingulate (medial prefrontal) cortex_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.86529
plasma membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.9004
Foxl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	45.7991
Lhx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	84.05
CHP212	CCLE Cell Line Gene CNV Profiles	-1.0	-2.09737
dorsal thalamus_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.872154
posteroventral (inferior) parietal cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.18105
Ptf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	64.7732
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26652
MEL-JUSO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A7JS-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-GC-A6I3-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3466
primary somatosensory cortex (area S1, areas 3,1,2)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.48246
Sox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.6759
Olfactory transduction	KEGG Pathways 2026	1.0	null
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26314
HTT-18923047-STHdh-human	ChEA Transcription Factor Binding Site Profiles	1.0	null
LHX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3568
TEF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6941
H3K9me3_ES-E14_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
DPRX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0875
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5333
ZR751	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.17723
striatum_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.979294
biological regulation	GO Biological Process Annotations 2015	1.0	null
PBX1-22567123-OVCAR3-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826464
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34806
COLO680N	CCLE Cell Line Gene CNV Profiles	1.0	1.4999
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.8419
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10886
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02338
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	107.5
A-Vietnam-1203_CIP048_RG4-2004(H5N1)PB2-627E_7day-MOI-10^4_None_GSE43301	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.83591
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.1439
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83574
Hand1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.8738
BARX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9606
IRF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	86.565
KMRC2	DepMap CRISPR Gene Dependency	1.0	2.57012
MIA-PACA-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SKBR3	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.2742
Glial cytoplasmic inclusion	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.031
H3K27me3_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MEF2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.3409
occipital neocortex_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.939809
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26314
Bladder Urothelial Carcinoma_BLCA_TCGA-CU-A72E-01A-12R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CAL-85-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.44153
SCC-25	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05242
Brain Lower Grade Glioma_LGG_TCGA-CS-6186-01A-12R-2027-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ATF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.6743
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.8647
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1419
Prostate adenocarcinoma_PRAD_TCGA-J4-A83L-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
T47D	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.15795
primary motor cortex (area M1, area 4)_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.10972
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.959056
Head and Neck squamous cell carcinoma_HNSC_TCGA-QK-A6IH-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.3279
FOSB::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.014
DU 145	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40843
FOXK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3835
M-1	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.79747
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47997
COV644	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.07473
membrane part	GO Cellular Component Annotations 2015	1.0	null
Arid3a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	44.7778
cerebellar cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.44438
JHOM1	DepMap CRISPR Gene Dependency	1.0	2.52538
HCC1395	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.14923
MEOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.6197
OV7	DepMap CRISPR Gene Dependency	1.0	2.90294
BFTC-905	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40843
Rhox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	34.382
striatum_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.850439
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.4655
NCIH1299	DepMap CRISPR Gene Dependency	1.0	2.08975
MM127	DepMap CRISPR Gene Dependency	1.0	2.78164
Brain Lower Grade Glioma_LGG_TCGA-S9-A7R7-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXA5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9581
CTBP1-25329375-LNCAP-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
MEF2D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.4297
DKMG	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68874
Arid5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	83.6686
K2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.8232
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
Sox17	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.7612
SN12C	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.923365
ERG	ChEA Transcription Factor Targets	1.0	null
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.789
posteroventral (inferior) parietal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.56404
Hypertropia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.627
FOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.2764
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GS-A9TV-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.868936
POU3F2	ChEA Transcription Factor Targets	1.0	null
CAOV3	CCLE Cell Line Gene CNV Profiles	1.0	1.4553
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01762
TRPS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5457
NCIH1623	CCLE Cell Line Gene CNV Profiles	-1.0	-1.96812
Brain Lower Grade Glioma_LGG_TCGA-TM-A84I-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
signal transduction	GO Biological Process Annotations 2015	1.0	null
AU565	CCLE Cell Line Gene CNV Profiles	1.0	1.77834
JHOS4	CCLE Cell Line Gene CNV Profiles	1.0	1.61997
G protein-coupled receptor, rhodopsin-like	InterPro Predicted Protein Domain Annotations	1.0	null
primary motor cortex (area M1, area 4)_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.62851
POU3F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3466
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.9678
H3K9me3_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Lung adenocarcinoma_LUAD_TCGA-O1-A52J-01A-11R-A262-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Gata3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.458
primary somatosensory cortex (area S1, areas 3,1,2)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.39013
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.922656
MEF2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.8936
HCC2935	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22882
primary motor cortex (area M1, area 4)_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.830146
detection of chemical stimulus	GO Biological Process Annotations 2015	1.0	null
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.887444
SNU503	CCLE Cell Line Gene CNV Profiles	1.0	1.38306
Gfi1b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.9495
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4308
TE4	DepMap CRISPR Gene Dependency	1.0	5.48985
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.65886
KCL-22	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.8332
Prostate adenocarcinoma_PRAD_TCGA-YJ-A8SW-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ML1	CCLE Cell Line Gene CNV Profiles	1.0	1.63832
NCI-H1623	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.16362
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4691-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Nobox	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	43.3421
GSC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.6567
Alx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.312
RBBP5	ENCODE Transcription Factor Targets	1.0	null
CTCF_HepG2_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Sox3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	15.9775
mediodorsal nucleus of thalamus_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.04862
HOXB4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7919
A-Vietnam-1203_CIP048_RG3-2004(H5N1)PB1-F2del_1day-MOI-10^4_None_GSE44441	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.65113
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.284
NCIH838	CCLE Cell Line Gene CNV Profiles	-1.0	-2.22077
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.923365
primary auditory cortex (core)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.4305
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.2254
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	80.5773
PBX1-22567123-OVCAR3-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
SOX5	JASPAR Predicted Transcription Factor Targets	1.0	null
Olfactory Signaling Pathway	Reactome Pathways 2014	1.0	null
DBP	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1506
KP4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.898107
septal organ	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.21168
HOXB3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0418
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.6414
TOV112D	DepMap CRISPR Gene Dependency	1.0	3.24443
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5001-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Translation preinitiation complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.904
Lhx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.9837
HCC364	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35939
Sox1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	95.6863
Ar	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.1015
PMC2873957-pone.0010709.s003.xls-SOX2-only_SOX2_motif_present_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
TAF2-19829295-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.4732
FOSL1::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.6609
MEIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2828
posteroventral (inferior) parietal cortex_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.833207
YY1-22570637-MALME-3M-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
VSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5188
FOXO4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8207
posteroventral (inferior) parietal cortex_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.27611
SNU869	CCLE Cell Line Gene CNV Profiles	1.0	2.29324
Lung adenocarcinoma_LUAD_TCGA-38-4631-01A-01R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.674
cell part	GO Cellular Component Annotations 2015	1.0	null
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07023
RAC3-21632823-H3396-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
bonemarrow	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.08312
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A20F-06A-21R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
YD38	DepMap CRISPR Gene Dependency	1.0	4.26156
Chromophobe renal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.033
PITX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.0349
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A8YR-01A-12R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MDAMB436	CCLE Cell Line Gene CNV Profiles	1.0	1.77601
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42436
cerebellar cortex_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.850439
Msx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	65.0074
ECGI10	CCLE Cell Line Gene CNV Profiles	1.0	1.8936
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.1438
FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0364
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.19722
Sarcoma_SARC_TCGA-QQ-A8VF-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BARHL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8124
Lung adenocarcinoma_LUAD_TCGA-05-4397-01A-01R-1206-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.729
SK-CO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11894
TUHR4TKB	CCLE Cell Line Gene CNV Profiles	-1.0	-1.62238
TE-10	COSMIC Cell Line Gene CNV Profiles	1.0	2.76305
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.4718
biological_process	GO Biological Process Annotations 2015	1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5JF-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-MT-A7BN-01A-12R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H2AFZ_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H2452	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07023
Esrrg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.9937
Hoxa13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.6978
Prostate adenocarcinoma_PRAD_TCGA-YL-A8SC-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Parkin_OE_GDS4476_55_human_U87MG	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
PPARD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8395
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5004-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NFATC3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5853
response to stimulus	GO Biological Process Annotations 2015	1.0	null
AGS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.962712
SCC25	DepMap CRISPR Gene Dependency	1.0	2.20645
IGR-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GATA3_01_163	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.64604
NCI-H2803	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1699
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.264
HCC38	DepMap CRISPR Gene Dependency	1.0	11.4059
intrinsic component of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
ZNF35	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1285
HOXB7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.5384
CA SKI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07098
snoutepidermis	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.831891
cellular_component	GO Cellular Component Annotations 2015	1.0	null
H3K27me3_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02338
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8333
HOXC10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7269
primary motor cortex (area M1, area 4)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	3.4231
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4988-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
G130	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18667
EZH2_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-A6AL-01A-11R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-7821-01A-12R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-8472-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.0311
POU3F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.8726
NCI-SNU-5	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878819
MNX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.8052
SNU-81	COSMIC Cell Line Gene Mutation Profiles	1.0	null
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Paralytic squint	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.779
ZNF24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.6822
SOX13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.3025
ZR7530	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.825613
HOXB8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9206
plasma membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
GSU	CCLE Cell Line Gene CNV Profiles	1.0	1.38258
POU2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4628
ventrolateral prefrontal cortex_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.62851
STAT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4277
hippocampus (hippocampal formation)_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.0789
ONECUT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	106.04
SOX2-19829295-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Hmx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	43.3895
HCC38	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.16011
A-Vietnam-1203_CIP048_RG4-2004(H5N1)NS1trunc124_4day-MOI-10^3_None_GSE44445	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.09017
TE4	CCLE Cell Line Gene CNV Profiles	1.0	2.14858
HSF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0011
posterior (caudal) superior temporal cortex (area 22c)_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.44438
EVX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4829
GSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.978
NR1H2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.24
anterior (rostral) cingulate (medial prefrontal) cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.29941
A-VN-1203-2004(H5N1)_Day2-10^4pfu_22074594_GSE33263	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.49751
amygdaloid complex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.927868
HCC1428	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.76605
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.956307
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4784-01A-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.22292
MELAS syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.136
FOXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8637
Kidney renal papillary cell carcinoma_KIRP_TCGA-MH-A854-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LS-411N	COSMIC Cell Line Gene Mutation Profiles	1.0	null
membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
MDA-MB-468	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11629
FOXS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1497
GPCR downstream signaling	Reactome Pathways 2014	1.0	null
Adrenocortical carcinoma_ACC_TCGA-PK-A5HB-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SNU1076	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50548
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.9671
496100452_HIP_possible Alzheimer's disease_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	13.779
FOXP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5357
Exotropia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.202
orbital frontal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.0789
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A3ES-06A-11R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
posteroventral (inferior) parietal cortex_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.993884
ZNF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.5792
POU4F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.6955
VSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4488
NANOG-20526341-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
OTX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.4949
mediodorsal nucleus of thalamus_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.927868
Dlx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	59.795
GATA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.4967
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.4387
769P	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43268
Foxj3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	56.0049
anterior (rostral) cingulate (medial prefrontal) cortex_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.893781
NKX6-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9093
HOXC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1353
Stat5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.6972
DMRTA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7707
ventrolateral prefrontal cortex_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.59614
SCABER	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-7797-11A-01R-2263-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
624 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35939
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.3261
amygdaloid complex_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.09388
Prostate adenocarcinoma_PRAD_TCGA-VP-A87D-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-VP-A87K-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MDAMB361	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.860744
detection of stimulus involved in sensory perception	GO Biological Process Annotations 2015	1.0	null
striatum_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.37164
SBC-5	COSMIC Cell Line Gene Mutation Profiles	1.0	null
heart	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.832608
Dlx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	58.673
Brain Lower Grade Glioma_LGG_TCGA-CS-6188-01A-11R-1896-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
A-Vietnam-1203_CIP048_RG3-2004(H5N1)PB1-F2del_4day-MOI-10^4_None_GSE44441	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.06875
184B5	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.75741
primary auditory cortex (core)_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.46946
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18667
ZNF680	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.6356
YY1-22570637-MALME-3M-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
LHX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2361
primary visual cortex (striate cortex, area V1/17)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.37577
MDAMB468	CCLE Cell Line Gene CNV Profiles	1.0	1.69964
SKM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35866
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1699
Kidney renal clear cell carcinoma_KIRC_TCGA-B8-4622-01A-02R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HLF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5756
SHP77	DepMap CRISPR Gene Dependency	1.0	7.30738
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.04069
CLDN18_KO_GSE48443_44_mouse_lung	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
primary motor-sensory cortex (samples)_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.21734
receptor activity	GO Molecular Function Annotations 2015	1.0	null
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6818
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.0355
Esotropia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.175
MPNST724	DepMap CRISPR Gene Dependency	1.0	2.24937
PAX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.003
beta-catenin destruction complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.138
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.7835
NCI-H2172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.861933
Hmx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	63.8134
detection of chemical stimulus involved in sensory perception	GO Biological Process Annotations 2015	1.0	null
SRY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9286
amygdaloid complex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.940824
NCI-H2804	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02338
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.34792
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.482
JHH6	CCLE Cell Line Gene CNV Profiles	1.0	1.5372
TBX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.858
amygdaloid complex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.20217
KP3	CCLE Cell Line Gene CNV Profiles	-1.0	-2.31121
TE-4	COSMIC Cell Line Gene CNV Profiles	1.0	2.76305
A-Vietnam-1203_CIP048_RG4-2004(H5N1)NS1trunc124_7day-MOI-10^3_None_GSE44445	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.57128
posteroventral (inferior) parietal cortex_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.08319
HNF1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.7044
ZNF136	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.5717
GATA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.393
SOX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.5747
HOXC8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9089
primary visual cortex (striate cortex, area V1/17)_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.839979
HTT	ChEA Transcription Factor Targets	1.0	null
primary motor cortex (area M1, area 4)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.950198
Nephroblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.048
FOXP2	ChEA Transcription Factor Targets	1.0	null
TBX20	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.6457
NCIH1648	CCLE Cell Line Gene CNV Profiles	1.0	1.32881
integral component of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
cerebellar cortex_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.03865
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.922656
LS513	DepMap CRISPR Gene Dependency	1.0	2.15303
Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A7JD-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.0316
cell periphery	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
A-CA-04-2009(H1N1)_Day3_22532695_GSE36328	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.52909
FOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	102.878
NCI-H1781	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.76981
NY	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NCI-H650	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PMC10960568-mjad044_supplemental_file.pdf-46-NFYC-AS1_NFYC	Rummagene Transcription Factor Associations 2026	1.0	null
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
RT4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.8332
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855694
PITX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.7973
embryonic stem no feeder	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.52267
orbital frontal cortex_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.99759
NCI-H23	COSMIC Cell Line Gene Mutation Profiles	1.0	null
signal transducer activity	GO Molecular Function Annotations 2015	1.0	null
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02338
LHX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2267
PRRX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5438
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11522
cerebellar cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.18303
ERG-20517297-VCAP-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31212
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.6182
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	96.0148
hippocampus (hippocampal formation)_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.93453
NCI-H1666	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Sarcoma_SARC_TCGA-JV-A5VE-01A-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CAL27	CCLE Cell Line Gene CNV Profiles	1.0	2.19783
osteoblasts	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.977344
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826464
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.7548
NR2C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.7795
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878819
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.8524
H3K9me3_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A71A-01A-22R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXB5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4197
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.5442
MDAMB157	DepMap CRISPR Gene Dependency	1.0	3.72061
ESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8378
RORA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.4178
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4852-01A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KMRC3	DepMap CRISPR Gene Dependency	1.0	2.62871
prdm1_00000000_e9dot5_placenta_lof_mouse_gpl6887_gse39584	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.001811
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02338
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	72.6052
posteroventral (inferior) parietal cortex_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.99759
Papillary carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.288
GBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9734
SCS214	DepMap CRISPR Gene Dependency	1.0	3.5104
GPCR, rhodopsin-like, 7TM	InterPro Predicted Protein Domain Annotations	1.0	null
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1204
HCC2270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26652
Skin Cutaneous Melanoma_SKCM_TCGA-DA-A1I5-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KYSE-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34806
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.898107
E2F1-20622854-HELA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
HOXB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.766
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.899005
PA-TU-8988S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02338
NCIN87	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53235
NANOG-19829295-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
CAL-85-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.76305
FOXF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6044
UMUC10	DepMap CRISPR Gene Dependency	1.0	4.11134
posteroventral (inferior) parietal cortex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.83398
Dlx5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	47.5433
transmembrane signaling receptor activity	GO Molecular Function Annotations 2015	1.0	null
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.975783
g-protein coupled receptor signaling pathway	GO Biological Process Annotations 2015	1.0	null
anterior (rostral) cingulate (medial prefrontal) cortex_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.12697
HOXA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5811
PMC10245467-mmc3.pdf-277-TERF1_TERF1	Rummagene Transcription Factor Associations 2026	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-21-5782-01A-01R-1635-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Rarb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	58.2588
TCF7L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.9275
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.75402
primary motor cortex (area M1, area 4)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.34423
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	84.9546
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	66.385
RKN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.38697
Shox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	63.756
MM1S	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39561
M059K	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10397
PMC10915192-ab-23-0304-Supplementary-Table-S6.pdf-13-SOX6_SOX6	Rummagene Transcription Factor Associations 2026	1.0	null
CAL 27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.20251
anterior (rostral) cingulate (medial prefrontal) cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.99256
MEOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0979
CDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.325
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0433
RERFLCSQ1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34901
Arid3b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	62.1337
DMRTC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.7826
PMC10709143-41556_2023_1271_MOESM7_ESM.xls-PAX7_Re-injury-Target_name_PAX7	Rummagene Transcription Factor Associations 2026	1.0	null
GATA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4333
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.922656
Bcl11b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	36.8306
EMX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.6608
Extraocular muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.833
c2c12	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.87667
ZSCAN16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.0997
PMC3303130-NIHMS40463-supplement-4.xls-KamKwaMuk_AA_differences-human_geneID_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
CHD1	ENCODE Transcription Factor Targets	1.0	null
NCIH2073	CCLE Cell Line Gene CNV Profiles	1.0	1.36046
Pax7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.94
GSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1271
CHD1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EN2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2672
Prostate adenocarcinoma_PRAD_TCGA-VP-A87J-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pou5f1::Sox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.2668
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878819
FOXP2-21765815-NEURO2A-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
NCI-H740	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CW-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NCIH28	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44486
MZ2-MEL	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.002
A704	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54411
A498	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
VAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2128