association	dataset	threshold value	standardized value
Kidney renal papillary cell carcinoma_KIRP_TCGA-MH-A854-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Signal Transduction	Reactome Pathways 2014	1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5LE-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCIH596	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33569
HOKUG	DepMap CRISPR Gene Dependency	1.0	2.01729
Olfactory Signaling Pathway	Reactome Pathways 2024	1.0	null
TGBC18TKB	DepMap CRISPR Gene Dependency	1.0	2.08761
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.61572
GATA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8565
ZNF35	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8914
HUH1	CCLE Cell Line Gene CNV Profiles	1.0	1.42135
membrane part	GO Cellular Component Annotations 2015	1.0	null
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05343
LS1034	DepMap CRISPR Gene Dependency	1.0	3.92716
TBX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3164
inferolateral temporal cortex (area TEv, area 20)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.866641
olfactory receptor activity	GO Molecular Function Annotations 2023	1.0	null
POU4F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.2861
PMC12616242-can-24-3452_supplementary_table_s2_suppst2.xlsx-Up_bins-Up_bins_gaining_H3K27me3_in_hpMSC-EWSR1_FLI1_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
temporal neocortex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.33268
SKM1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.98613
U343	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32083
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051941
primary visual cortex (striate cortex, area V1/17)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.975183
stomach	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.539793
496100466_PCx_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.08771
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1388
HMBS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.10596
NCI-H2110	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.87538
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4994-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K27me3_CD3 Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
MKN7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59881
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.59841
Stat5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	64.6442
posteroventral (inferior) parietal cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.855096
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Elf5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	42.2187
HPAFII	CCLE Cell Line Gene CNV Profiles	1.0	1.79971
stomach disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.694702
NCI-H226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.987034
NCIH2110	CCLE Cell Line Gene CNV Profiles	1.0	1.4725
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.9714
MC-IXC	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Olfactory Signaling Pathway	Reactome Pathways 2014	1.0	null
MKN-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23792
intrinsic component of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.888115
BACH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1265
TBCD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.15795
JEKO1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81436
primary somatosensory cortex (area S1, areas 3,1,2)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.8349
MJ	DepMap CRISPR Gene Dependency	1.0	3.79302
HCC60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.26921
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
LIPE	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54963
anterior (rostral) cingulate (medial prefrontal) cortex_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.2436
ventrolateral prefrontal cortex_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.11846
BT20	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.899235
496100469_TCx_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.99952
HOXB9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3641
MDA-PCa-2b cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.385
POU3F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8829
TBXT	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.27
Nkx3-2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	52.174
H3K9me3_Mobilized CD34 Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
DMS454	CCLE Cell Line Gene CNV Profiles	1.0	1.44589
HSC-39	COSMIC Cell Line Gene Mutation Profiles	1.0	null
DND-41	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SNU-216	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.826626
Amylin receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.017
striatum_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.855096
CEBPD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6707
posterior (caudal) superior temporal cortex (area 22c)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.18739
mainolfactoryepithelium.MOE.	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.969246
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050857
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6937
Ebf2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	39.6539
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.61572
Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.806
anterior (rostral) cingulate (medial prefrontal) cortex_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.855096
IGR37	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6996
DMRTC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.3514
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18157
SKNFI	CCLE Cell Line Gene CNV Profiles	1.0	1.33446
SRF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0957
STAT3_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Foxj3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	56.4535
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.17999
Kidney renal papillary cell carcinoma_KIRP_TCGA-GL-7966-01A-11R-2204-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
OMM25	DepMap CRISPR Gene Dependency	1.0	3.19603
VMRCLCD	CCLE Cell Line Gene CNV Profiles	1.0	2.20403
Nfat5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	42.4466
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05872
gastric mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.774419
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.3718
ZNF558	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	177.924
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064183
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
A4/FUK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18948
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.976591
Bladder Urothelial Carcinoma_BLCA_TCGA-CU-A3KJ-01A-11R-A21D-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ISL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.4555
Lhx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.9837
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46273
SNU213	DepMap CRISPR Gene Dependency	1.0	2.365
SNU869	DepMap CRISPR Gene Dependency	1.0	2.00198
POU2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0051
Kidney Chromophobe_KICH_TCGA-KL-8345-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20879
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A431-01A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-A6JN-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOSL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5733
detection of stimulus	GO Biological Process Annotations 2015	1.0	null
G130	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.856588
Membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
Crx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.3695
Hoxa13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	51.0917
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.66825
mediodorsal nucleus of thalamus_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.975183
lateral ganglionic eminence_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.11846
Atrophic gastritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.267
preoptic	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.23618
NFATC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.8924
CAL-120	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0746
RT112	DepMap CRISPR Gene Dependency	1.0	2.35834
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A183-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.900132
ZNF200	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.56968
FOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	80.0259
PPIP5K2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50307
Nr1h2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	14.5394
narcolepsy	GAD Gene-Disease Associations	1.0	null
thyroid	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.23243
HPAF-II	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.02867
Hoxd13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	51.6408
HCC202	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.997592
DBP	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2567
POU3F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7938
Pparg::Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	42.3919
NCI-H2135	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.911903
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039682
EZH2_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1954	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.43896
JL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.09405
Nanog	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.9695
P63-20808887-KERATINOCYTES-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-43-3394-01A-01R-0980-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-7479-01A-11R-2027-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HPAC	CCLE Cell Line Gene CNV Profiles	-1.0	-2.87576
TLX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.4253
Brain Lower Grade Glioma_LGG_TCGA-FG-8186-01A-11R-2256-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
plasma membrane	LOCATE Curated Protein Localization Annotations	1.0	null
FOS::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4367
OAW42	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06981
Pia mater	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.798
spleen	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.46357
Varicosity	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.197
RFX5	ENCODE Transcription Factor Targets	1.0	null
Nkx3-1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.5448
496100367_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.68243
Brain Lower Grade Glioma_LGG_TCGA-FG-A87N-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2824-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05343
PANC0327	CCLE Cell Line Gene CNV Profiles	1.0	1.83851
MDN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.44617
primary visual cortex (striate cortex, area V1/17)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.43064
striatum_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.33268
Arterial calcification of infancy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.234
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40413
SNU-601	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49863
NCIH1792	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36167
H3K27me3_Peripheral Blood Mononuclear Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Rarb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	76.6751
IRX6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.97114
KON	DepMap CRISPR Gene Dependency	1.0	2.18489
dorsolateral prefrontal cortex_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.975183
primary motor cortex (area M1, area 4)_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.14
ovary	GTEx Tissue Gene Expression Profiles	1.0	0.887441
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.832551
SNU16	DepMap CRISPR Gene Dependency	1.0	2.47741
PAX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.6887
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.69967
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.36041
bonemarrow	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.06147
IST-SL2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-G6-A5PC-01A-11R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.24423
Olfactory transduction	KEGG Pathways 2026	1.0	null
SK-N-DZ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.939165
CHLA90	DepMap CRISPR Gene Dependency	1.0	3.7255
primary motor cortex (area M1, area 4)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.05864
HCC1954	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0593
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.65926
ACHN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.824745
Sox5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.4597
fertilizedegg	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.824366
Arx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	67.1366
KYO1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.88124
BGC823	CCLE Cell Line Gene CNV Profiles	1.0	1.42573
HCC1428	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.909072
SNU213	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34656
posterior (caudal) superior temporal cortex (area 22c)_26 pcw_F_12949	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.886959
orbital frontal cortex_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.2436
amygdaloid complex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.15479
A4FUK	CCLE Cell Line Gene CNV Profiles	1.0	2.38295
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
MXI1	ENCODE Transcription Factor Targets	1.0	null
Nr5a2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.2248
dorsolateral prefrontal cortex_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.33268
JVM3	CCLE Cell Line Gene CNV Profiles	1.0	1.44263
HOXD10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0779
H3K27me3_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RPMI7951	DepMap CRISPR Gene Dependency	1.0	2.03639
Brain Lower Grade Glioma_LGG_TCGA-E1-A7YV-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DMRTA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8965
Kidney renal papillary cell carcinoma_KIRP_TCGA-DZ-6134-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
E2F2-33952803-PATIENT-HUMAN-SYNOVIUM	ChEA Transcription Factor Targets 2022	1.0	null
SU-DHL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29386
Brain Lower Grade Glioma_LGG_TCGA-HW-8319-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lhx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	176.7
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-5083-01A-02R-1420-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
detection of chemical stimulus involved in sensory perception	GO Biological Process Annotations 2015	1.0	null
PMC12019518-ao5c02459_si_002.xlsx-Table_S3-Table_S3_Screening_of_genes_that_are_commonly_upregulated_in_cells_on_stiff_substrate_and_down-regulated_by_KD_of_UBE2A_B_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Msx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	45.5774
NLRP1 inflammasome complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.916
HOXD11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9431
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40682
Shox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	44.6835
TEAD-YAP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.304
RAC3-21632823-H3396-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
22RV1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08626
Hmx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	45.8202
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28879
Gfi1b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.8859
CDX2-19796622-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
SLC16A5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57756
anterior (rostral) cingulate (medial prefrontal) cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.16167
upper (rostral) rhombic lip_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.33268
Hoxa11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.4499
posterior (caudal) superior temporal cortex (area 22c)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.16583
GATA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.516
496100391_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1708
hippocampus (hippocampal formation)_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.11846
NCIH1105	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76469
SLC25A46	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.83538
primary auditory cortex (core)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.4195
H3K27me3_Treg Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Olfactory nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.683
SK-MEL-30	COSMIC Cell Line Gene Mutation Profiles	1.0	null
TUBG2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.64816
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57895
Head and Neck squamous cell carcinoma_HNSC_TCGA-P3-A6T3-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
plasma membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Ikzf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.5883
POU2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2993
496100421_PCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.40625
MDAMB134VI	CCLE Cell Line Gene CNV Profiles	1.0	1.62252
Foxj2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.435
496100459_PCx_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.35003
OVCAR8	DepMap CRISPR Gene Dependency	1.0	3.03855
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3506
REST	ChEA Transcription Factor Targets	1.0	null
HCC2302	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.69442
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.900132
dorsolateral prefrontal cortex_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.975183
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.25669
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
molecular transducer activity	GO Molecular Function Annotations 2015	1.0	null
Ebf4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.2154
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10827
H513	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GPCR downstream signaling	Reactome Pathways 2014	1.0	null
POU1F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	67.8603
HT-115	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13226
HSF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.9804
184A1N4	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.935795
Calcitonin family receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.829
receptor activity	GO Molecular Function Annotations 2015	1.0	null
Nkx2-1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.8856
HT144SKINFV2	DepMap CRISPR Gene Dependency	1.0	2.42047
Dlx5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.546
NUGC-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.824745
IRF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.5
NKM-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HOXC10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0007
MEWO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
537 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.8015
Stat5a::Stat5b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	52.9166
FEZF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.52078
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.6277
Hic1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.213
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050973
Cellular anatomical entity	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
Mecom	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	69.4815
posterior (caudal) superior temporal cortex (area 22c)_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.04689
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.856588
detection of chemical stimulus	GO Biological Process Annotations 2015	1.0	null
Pou5f1::Sox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	80.9217
HOXC12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2111
DMS79	CCLE Cell Line Gene CNV Profiles	-1.0	-1.7317
Signaling by GPCR	Reactome Pathways 2014	1.0	null
H3K27me3_CD14-positive monocyte_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-QK-A6VC-01A-23R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100460_TCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.60397
Head and Neck squamous cell carcinoma_HNSC_TCGA-H7-A76A-01A-51R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cell surface receptor signaling pathway	GO Biological Process Annotations 2015	1.0	null
MDA-MB-231	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.856588
H3K27me3_Adult Liver	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.90914
olfactory receptor activity	GO Molecular Function Annotations 2025	1.0	null
MDAMB361	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.34905
Narcolepsy	HuGE Navigator Gene-Phenotype Associations	1.0	null
Sarcoma_SARC_TCGA-DX-A3LY-01B-11R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GPCR, rhodopsin-like, 7TM	InterPro Predicted Protein Domain Annotations	1.0	null
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.827484
ZNF211	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.9584
SRY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2143
BHY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.856588
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RP-01A-21R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GATA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2392
Yy1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.1598
Expression and translocation of olfactory receptors	Reactome Pathways 2024	1.0	null
BHLHE23	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1492
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-P7-A5NX-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.015
MAFK	ENCODE Transcription Factor Targets	1.0	null
HOXC13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3788
RWDD2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.37059
primary visual cortex (striate cortex, area V1/17)_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.975183
atrophic gastritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.08076
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A1EI-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.83153
pancreas	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	2.09756
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2MU-06A-21R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Dmbx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.3955
SLC38A4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.34169
RND1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.3411
NB13	COSMIC Cell Line Gene Mutation Profiles	1.0	null
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.79441
DMS 454	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28879
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A2JB-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
inferolateral temporal cortex (area TEv, area 20)_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.03391
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37787
BNC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6477
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A6H0-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
T47D	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.74436
Stat5b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	49.0873
G122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10915
T3M4	CCLE Cell Line Gene CNV Profiles	1.0	1.52867
membrane	LOCATE Curated Protein Localization Annotations	1.0	null
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.856588
posteroventral (inferior) parietal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.02117
BACH1	ENCODE Transcription Factor Targets	1.0	null
SNU216	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40331
SPIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.249
dg1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.181
NCI-H1648	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.95368
Tcf21	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	36.2847
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49863
cellular_component	LOCATE Curated Protein Localization Annotations	1.0	null
inferolateral temporal cortex (area TEv, area 20)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.948951
SW1573	DepMap CRISPR Gene Dependency	1.0	3.8517
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0593
BCOR-27268052-CHIP-SEQ-BCELLS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
RDM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.59999
retina	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.963537
EZH2_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Alx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	53.7385
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RV-01A-21R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cell periphery	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
UMC-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.888115
DANG	DepMap CRISPR Gene Dependency	1.0	2.47472
Dlx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	41.1306
EJM	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45582
Dlx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	41.9361
HOXC9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9855
Lhx8	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.5438
OCILY18	DepMap CRISPR Gene Dependency	1.0	2.51164
primary visual cortex (striate cortex, area V1/17)_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.65692
Refractive error	GWAS Catalog SNP-Phenotype Associations 2025	1.0	10.0
molecular_function	GO Molecular Function Annotations 2015	1.0	null
PMC11923433-BLOOD_BLD-2024-025618-mmc2.xlsx-S3_Specific_genes_in_CEBPA-dm-Supplemental_Table_3_The_subtype-specific_enriched_marker_genes_in_CEBPA-dm_subtype_patients_CEBPA	Rummagene Transcription Factor Associations 2026	1.0	null
amygdaloid complex_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.855096
REST-19997604-NEURONS-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.36233
CBC22 (MLST8)	NURSA Protein Complexes	1.0	null
transmembrane signaling receptor activity	GO Molecular Function Annotations 2015	1.0	null
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	88.5345
DPPA4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.78154
Nr2e3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.9565
SKMEL19	DepMap CRISPR Gene Dependency	1.0	2.75713
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.55771
TE10	CCLE Cell Line Gene CNV Profiles	1.0	2.03953
intrinsic component of membrane	GO Cellular Component Annotations 2015	1.0	null
Stat2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	122.539
primary somatosensory cortex (area S1, areas 3,1,2)_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.42801
TNFSF12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.19886
COV318	DepMap CRISPR Gene Dependency	1.0	2.36333
SW 620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04208
Olfactory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.327
ONECUT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	61.3593
Runx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.0595
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.308974
EZH2_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Sox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	40.9617
Olfactory tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.681
NCI-H1568	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NCI-H1944	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26392
HS578T	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.51042
Prostate adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.027
A-Vietnam-1203_CIP048_RG3-2004(H5N1)PB1-F2del_4day-MOI-10^4_None_GSE44441	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.90568
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.216528
ARID5A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77137
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.832551
Kidney renal clear cell carcinoma_KIRC_TCGA-A3-3352-01A-01R-0864-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
STAT3	ENCODE Transcription Factor Targets	1.0	null
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
PSN1	DepMap CRISPR Gene Dependency	1.0	3.1924
Foxo3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	38.8812
SNU1196	DepMap CRISPR Gene Dependency	1.0	2.18503
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23792
Lung squamous cell carcinoma_LUSC_TCGA-98-A53B-01A-11R-A262-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abomasum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.759914
RCOR1-19997604-NEURONS-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
PARP2_KD_GSE43981_676_human_HepG2	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-FN-7833-01A-11R-2090-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-E1-5311-01A-01R-1470-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hippocampus (hippocampal formation)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.967454
MEF2D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.1466
KMS34	CCLE Cell Line Gene CNV Profiles	1.0	1.72423
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.0745
MEF2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.923
Hmga1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	91.3682
cell part	GO Cellular Component Annotations 2015	1.0	null
TRIB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.92384
RPMI-7951	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33861
striatum_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.15744
Foxl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	57.5007
PMC8046804-41467_2021_22478_MOESM11_ESM.xlsx-Del_AA-TCGA-Unnamed_42_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
KMS11	CCLE Cell Line Gene CNV Profiles	1.0	2.53724
Alx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	77.711
ZNF776	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.71584
orbital frontal cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.956181
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.976591
amygdaloid complex_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.864404
95T1000	DepMap CRISPR Gene Dependency	1.0	10.7761
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.83153
PPP2R5B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.13519
posteroventral (inferior) parietal cortex_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.59936
Sox1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	54.5774
SOX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.1217
Skin Cutaneous Melanoma_SKCM_TCGA-D9-A4Z3-01A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Sox17	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.0481
Pseudoxanthoma elasticum	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.035
PMC12224929-ADVS-12-2416784-s006.xlsx-DEG_circGLIS3_KD-Unnamed_6_AR	Rummagene Transcription Factor Associations 2026	1.0	null
NCIH660	CCLE Cell Line Gene CNV Profiles	1.0	1.99165
HCC2935	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.826626
Sox7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.1144
VAMP8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.38192
HOXD12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0916
TEAD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.631
CL-40	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40413
dorsolateral prefrontal cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.22918
FOXE1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.9827
NCIH1355	CCLE Cell Line Gene CNV Profiles	1.0	1.88295
hippocampus (hippocampal formation)_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.932029
amygdaloid complex_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.62466
anterior (rostral) cingulate (medial prefrontal) cortex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.38628
SJSA1	DepMap CRISPR Gene Dependency	1.0	2.613
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.911395
H3K27me3_mononuclear cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
integral component of membrane	GO Cellular Component Annotations 2015	1.0	null
496100458_FWM_no dementia_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.13487
Kidney renal papillary cell carcinoma_KIRP_TCGA-SX-A7SP-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
A-427	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.900132
A704	CCLE Cell Line Gene CNV Profiles	1.0	1.47343
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45774
Ptf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	62.1959
GLB1L3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00366
Prostate epithelium cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.796
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5984
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.8073
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0746
OAW28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01026
primary somatosensory cortex (area S1, areas 3,1,2)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.45292
Brain Lower Grade Glioma_LGG_TCGA-DB-5280-01A-01R-1470-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Ethmoid bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.85
SOX2-21211035-LN229-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
HUH7	DepMap CRISPR Gene Dependency	1.0	2.40645
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A7CK-01A-11R-A32P-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NUDHL1	CCLE Cell Line Gene CNV Profiles	1.0	1.39061
detection of stimulus involved in sensory perception	GO Biological Process Annotations 2015	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6943-11A-01R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SOX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.7368
Gata3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.8195
plasma membrane	GO Cellular Component Annotations 2015	1.0	null
Nr2e1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	36.5876
Sox6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.6827
MDA-MB-468	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.911395
Sensory Perception	Reactome Pathways 2024	1.0	null
YAE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.5319
posterior (caudal) superior temporal cortex (area 22c)_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.855096
Skin Cutaneous Melanoma_SKCM_TCGA-FS-A1ZQ-06A-11R-A18U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
anterior (rostral) cingulate (medial prefrontal) cortex_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.2436
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13226
plasma membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
Irf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	84.3368
Foxf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.5394
KOPN-8	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.9247
Stat4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.4058
LOVO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13539
BUB3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.7334
anterior (rostral) cingulate (medial prefrontal) cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.53917
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055829
Hmx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	81.7735
cellular_component	GO Cellular Component Annotations 2015	1.0	null
Hmx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	45.9861
Contrast sensitivity	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.530103
CW-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PSMC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10003
primary somatosensory cortex (area S1, areas 3,1,2)_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.837306
SH10TC	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50283
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.0482
FU-OV-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MDST8	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Cribriform plate	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.866
MIA PACA-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.912277
PNT-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.042
ML-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.64064
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05343
anterior (rostral) cingulate (medial prefrontal) cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.965807
Foxo1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	38.3726
PMC7481169-277_2020_4194_MOESM7_ESM.xlsx-RUNX1_R174L-Unnamed_1_RUNX1	Rummagene Transcription Factor Associations 2026	1.0	null
KM-H2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
biological regulation	GO Biological Process Annotations 2015	1.0	null
SMAD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5656
SK-MES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.912277
CGTHW1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63465
Nfatc2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.9114
REC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46724
496100409_FWM_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.07917
dorsolateral prefrontal cortex_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.11846
primary auditory cortex (core)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.977104
BC-3	COSMIC Cell Line Gene Mutation Profiles	1.0	null
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
Arid5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	61.5064
integral component of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
Erg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	34.1585
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.912277
KMS11	DepMap CRISPR Gene Dependency	1.0	7.67393
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.911395
CDX2	ChEA Transcription Factor Targets	1.0	null
Ppara	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.7522
Lef1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	48.3932
HOXC11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3462
embryonic stem no feeder	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-2.34587
mediodorsal nucleus of thalamus_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.11846
hippocampus (hippocampal formation)_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.855096
PBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3333
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49863
dorsolateral prefrontal cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.978643
Nfatc1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.3754
hippocampus (hippocampal formation)_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.33268
HUH-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46273
RKN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25396
HCC38	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.588648
OVMANA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.988305
EZH2	ENCODE Transcription Factor Targets	1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5JY-01A-31R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.900132
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2M7-06A-11R-A18U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
response to stimulus	GO Biological Process Annotations 2015	1.0	null
PMC3348545-NIHMS263168-supplement-3.pdf-299-RARG_RARG	Rummagene Transcription Factor Associations 2026	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-G9-6347-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC8766486-42003_2021_2990_MOESM3_ESM.xlsx-ST18-Supplementary_Data_18_Gene_burden_for_deletions_by_subtype_ST18	Rummagene Transcription Factor Associations 2026	1.0	null
RFX5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
biological_process	GO Biological Process Annotations 2015	1.0	null
trachea	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.33052
membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0689
SKM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.76383
NR1D2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1255
TRPS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.224
PRDM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.6732
HS 746T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.890537
SUM159PT	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.918172
COLO824	DepMap CRISPR Gene Dependency	1.0	10.6006
BT549	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.58163
HCC3153	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.677506
mediodorsal nucleus of thalamus_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.37986
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10827
HS-SULTAN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13539
Pax7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	95.255
IGR39	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44037
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04208
SKNMC	DepMap CRISPR Gene Dependency	1.0	3.82298
ATAD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.69133
SK-N-FI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29212
signal transducer activity	GO Molecular Function Annotations 2015	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-IB-7646-01A-11R-2156-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POU5F1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.6238
POU2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4565
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.900132
Plasma membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4485
parietal neocortex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.855096
HCC33	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45774
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.71357
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0771
ChIP_CDX2_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
membrane	GO Cellular Component Annotations 2015	1.0	null
Dlx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.1569
embryoday7.5	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.899284
VCaP cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.74
SKNFI	DepMap CRISPR Gene Dependency	1.0	6.28863
ZBTB32	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.4152
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GS-A9TV-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SUM52PE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.24
Cell periphery	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
STAT1::STAT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.7129
MDAMB453	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.856209
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050973
JM1	CCLE Cell Line Gene CNV Profiles	1.0	3.20888
Atoh1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	52.2783
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.50086
inferolateral temporal cortex (area TEv, area 20)_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.62466
Brain Lower Grade Glioma_LGG_TCGA-DU-8163-01A-11R-2256-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
gastritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.791311
Nfe2l2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.5785
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.832551
NCIH1568	DepMap CRISPR Gene Dependency	1.0	3.3962
regulation of cellular process	GO Biological Process Annotations 2015	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-AS-3777-01A-01R-0864-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KG1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.61655
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18157
ZNF766	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2089
membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.912277
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.41629
Msgn1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	40.1292
Brain Lower Grade Glioma_LGG_TCGA-DU-7306-01A-11R-2090-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KMS26	CCLE Cell Line Gene CNV Profiles	-1.0	-2.35787
cervix uteri	GTEx Tissue Gene Expression Profiles	1.0	1.0127
Olfactory receptor	InterPro Predicted Protein Domain Annotations	1.0	null
NCIH1385	CCLE Cell Line Gene CNV Profiles	1.0	1.39437
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3478
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040608
HSF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0892
Hnf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	45.7694
G protein-coupled receptor, rhodopsin-like	InterPro Predicted Protein Domain Annotations	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4691-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PPARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.8571
regulation of biological process	GO Biological Process Annotations 2015	1.0	null
BACH1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cerebellar cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.975183
dorsolateral prefrontal cortex_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.855096
MEF2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.1628
ZNF410	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.0563
primary auditory cortex (core)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.03308
SKLU1	CCLE Cell Line Gene CNV Profiles	1.0	1.59106
SNU761	DepMap CRISPR Gene Dependency	1.0	2.41064
SW900	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2167
REC1	CCLE Cell Line Gene CNV Profiles	1.0	1.79885
H3K27me3_CD4+ CD25- CD45RA+ Naive Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
ZSCAN4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.1826
MXI1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Thap11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	51.5864
HUPT3	CCLE Cell Line Gene CNV Profiles	-1.0	-2.01941
ZNF143	ENCODE Transcription Factor Targets	1.0	null
ZNF143_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDAMB436	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52641
SU-DHL-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13226
PGR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0258
striatum_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.00452
MAFK_ES-E14_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FU97	DepMap CRISPR Gene Dependency	1.0	2.15175
posterior (caudal) superior temporal cortex (area 22c)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.09581
CORL105	CCLE Cell Line Gene CNV Profiles	-1.0	-1.87623
Arid3b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	68.5378
Lung squamous cell carcinoma_LUSC_TCGA-21-5782-01A-01R-1635-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
A-Vietnam-1203_CIP048_RG4-2004(H5N1)PB2-627E_7day-MOI-10^4_None_GSE43301	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.56179
NCI-H2106	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56318
inferolateral temporal cortex (area TEv, area 20)_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.76264
olfactory receptor activity	GO Molecular Function Annotations 2015	1.0	null
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.976591
Kidney renal clear cell carcinoma_KIRC_TCGA-A3-3335-01A-01R-0864-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
spinalcordlower	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.24248
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
signal transduction	GO Biological Process Annotations 2015	1.0	null
Arid3a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	39.9259
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
Amylin receptor complex 1	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.106
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.83153
primary visual cortex (striate cortex, area V1/17)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.10222
H3K4me1_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
cell part	LOCATE Curated Protein Localization Annotations	1.0	null
Leukemia	DisGeNET Gene-Disease Associations	1.0	null
KMS-11	COSMIC Cell Line Gene Mutation Profiles	1.0	null
detection of chemical stimulus involved in sensory perception of smell	GO Biological Process Annotations 2015	1.0	null
ACHN	CCLE Cell Line Gene CNV Profiles	1.0	1.73557
NCI-H1993	COSMIC Cell Line Gene Mutation Profiles	1.0	null
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.621
NCIH2106	CCLE Cell Line Gene CNV Profiles	-1.0	-1.56689
HCC1806	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01026
membrane part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
g-protein coupled receptor signaling pathway	GO Biological Process Annotations 2015	1.0	null
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.8806
RCOR1	ChEA Transcription Factor Targets	1.0	null
NR3C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.3111
primary auditory cortex (core)_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.33268
SNU-C5	COSMIC Cell Line Gene Mutation Profiles	1.0	null
signaling receptor activity	GO Molecular Function Annotations 2015	1.0	null
KU812	DepMap CRISPR Gene Dependency	1.0	3.16174
CEBPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0679
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.0819
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A3BZ-06A-12R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JL1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.19005
primary somatosensory cortex (area S1, areas 3,1,2)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.18137
g-protein coupled receptor activity	GO Molecular Function Annotations 2015	1.0	null
POU3F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8429
PMC7592539-12885_2020_7456_MOESM4_ESM.xlsx-Sup_TableS3_LMS_del_genes_conf-12q13_11_TP63	Rummagene Transcription Factor Associations 2026	1.0	null
BCL6B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.7261
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.056808
KP2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46434
MEL-HO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.83153
U2OS	DepMap CRISPR Gene Dependency	1.0	2.70582
HCC2998	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BHY	DepMap CRISPR Gene Dependency	1.0	2.56554
KP-1N	COSMIC Cell Line Gene Mutation Profiles	1.0	null
primary auditory cortex (core)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	3.12605
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13226
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14522
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.8068
Sarcoma_SARC_TCGA-JV-A75J-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Nobox	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	34.0789
primary somatosensory cortex (area S1, areas 3,1,2)_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.975183
LS-180	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Nr2f6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	76.153