association	dataset	threshold value	standardized value
skeletalmuscle_d	HPA Tissue Sample Gene Expression Profiles	-1.0	-1.85091
Perturb_2572_KD_HIF1A_ERP004269	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.6973
GSE137914_2_v_3_tet3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(20:2(11Z,14Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
IRF4_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:2(11Z,14Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE137914_4_v_5_tet3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE234155_7_v_1_nfix_human	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_9335_KO_CDKN2A_SRP158425	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.49696
PE(15:0/14:0)	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(9Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_12159_OE_TCF7_SRP144189	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.72449
bone marrow	HPA Tissue Gene Expression Profiles	1.0	0.856922
BCL3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-SIU8-0006-SM-2XCE5	GTEx Tissue Sample Gene Expression Profiles	1.0	1.40984
Respiratory Tract Diseases	CTD Gene-Disease Associations	1.0	1.06152
PC(24:1(15Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
ZBTB7A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.6417
GSE114992,GSE114993_8_v_5_irf5_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(24:0/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
NR0B1	ChEA Transcription Factor Targets	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-8110-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
amygdaloid complex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	0.922901
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RW-01A-11R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE225141,GSE225143_0_v_1_mettl3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
amygdaloid complex_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	0.875646
H3K4me1_limb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
G25418HZ	GlyGen Glycosylated Proteins	1.0	null
496100417_HIP_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.19835
CSTB_KO_GDS5090_200_mouse_Cerebellar granule cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
GSE190186,GSE190188_0_v_5_apoe_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
hydrolase activity, acting on ester bonds	GO Molecular Function Annotations 2015	1.0	null
PC(20:3(5Z,8Z,11Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:3(8Z,11Z,14Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
SG in midinferior temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.45441
496100645_HIP_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.23608
PE(18:3(9Z,12Z,15Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(24:1(15Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
r1 roof plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.27725
PC(18:1(9Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PMC7481169-277_2020_4194_MOESM7_ESM.xlsx-RUNX1_R174L-Unnamed_1_RUNX1	Rummagene Transcription Factor Associations 2026	1.0	null
Brain Diseases	CTD Gene-Disease Associations	1.0	1.10353
PMC12048643-44318_2025_409_MOESM3_ESM.xlsx-regulonTargets-MAFB_MAFB	Rummagene Transcription Factor Associations 2026	1.0	null
PE(15:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(9Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_15476_OE_MYC_SRP218384	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.38137
Perturb_2327_KD_SF3B3_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-5.38202
DBNDD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.31585
CTCF_H1-hESC_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(18:3(9Z,12Z,15Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PMC9399107-41467_2022_32627_MOESM6_ESM.xlsx-7_B-cell_subsets-gene_name_Bcell_C5_NR4A1_NR4A1	Rummagene Transcription Factor Associations 2026	1.0	null
PC(22:2(13Z,16Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_12521_KD_MITF_SRP190868	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.63119
PC(20:5(5Z,8Z,11Z,14Z,17Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE110178_2_v_6_tranylcypromine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.774
GTEX-XQ3S-0006-SM-4BOQ4	GTEx Tissue Sample Gene Expression Profiles	1.0	2.74129
SPI1-22096565-GC-B-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
cell differentiation	GO Biological Process Annotations 2015	1.0	null
marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079752
PC(22:1(13Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
superior colliculus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.44973
GTEX-RM2N-1626-SM-2TF5N	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(20:1(11Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
GSE165579_3_v_2_opa1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
intermediate stratum of r9BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.0446
PC(24:1(15Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
ETV2::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.0534
PE(20:4(5Z,8Z,11Z,14Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
H3K4me1_G1E_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Golgi lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.749
PE(18:1(11Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
PC(o-18:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Lung adenocarcinoma_LUAD_TCGA-86-8671-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE149124,GSE149128_2_v_0_cdk7_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE149903_0_v_1_myd88_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(18:1(9Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
cingulate gyrus, retrosplenial part, left, superior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.56115
Perturb_17616_OE_FOXP2_SRP225889	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
PE(20:1(11Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_5520_OE_LRG1_SRP386433	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-5.65768
PC(22:5(4Z,7Z,10Z,13Z,16Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PrefrontalCortex	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.02387
PMC11067031-pnas.2317690121.sd05.xlsx-Sheet1-Differentially_expressed_genes_between_PML_RARA_GFP_vs_Empty_vector_GFP_human_hematopoietic_cells_at_day_7_by_single_cell_RNA-seq_RARA	Rummagene Transcription Factor Associations 2026	1.0	null
H3K4me3_G1E_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
GSE157777_2_v_3_foxa3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(18:3(9Z,12Z,15Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
STAT1	JASPAR Predicted Transcription Factor Targets	1.0	null
parietal neocortex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.941195
outer CP in subgenual (subcallosal) cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.01928
GTEX-QEG4-0006-SM-2I5FY	GTEx Tissue Sample Gene Expression Profiles	1.0	1.02015
intermediate stratum of THyB-V	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.22502
PC(14:0/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-H6-A45N-11A-12R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Infralimbic area, layer 2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.75778
orbital frontal cortex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.46501
GTEX-XMK1-0126-SM-4B65F	GTEx Tissue Sample Gene Expression Profiles	1.0	2.09842
PC(18:1(9Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Amylin receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.81
Perturb_15447_KD_HDAC5_SRP273298	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.84045
GSE214725_1_v_0_ibrutinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
parasubicular cortex (parasubiculum)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.7654
Sarcoma_SARC_TCGA-K1-A6RT-01A-32R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-B9-A69E-01A-11R-A31O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-CS-6665-01A-11R-1896-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K27me3_megakaryocyte_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
21205295-TableS1	GeneSigDB Published Gene Signatures	1.0	null
AR	ChEA Transcription Factor Targets	1.0	null
GSE131798,GSE131804_5_v_0_igf1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PMC10282096-41467_2023_39038_MOESM4_ESM.xlsx-All_genes_Upregulated-ENSG00000177426_TGIF1	Rummagene Transcription Factor Associations 2026	1.0	null
Thoracic thymus_CT1_plasmacytoid dendritic cell	HuBMAP ASCT+B Augmented with RNA-seq Coexpression	1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(9Z,12Z,15Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:0/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:0/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
GSE234340_1_v_7_muc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
NFATC1	ENCODE Transcription Factor Targets	1.0	null
GSE94849_7_v_2_pinometostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
GSE151119_2_v_1_hsf1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Organelle subcompartment	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
GTEX-S32W-0626-SM-2XCBG	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GSE143212_1_v_2_bleomycin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PE(15:0/16:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_8849_KD_MLKL_SRP165226	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	6.14058
PE(20:0/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
SMRT-22465074-MACROPHAGES-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
GTEX-XLM4-2926-SM-4AT59	GTEx Tissue Sample Gene Expression Profiles	1.0	1.20698
PC(20:3(8Z,11Z,14Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(14:0/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(8Z,11Z,14Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(9Z,12Z,15Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
Integument	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
inferolateral temporal cortex (area TEv, area 20)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.11771
PC(22:0/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
LCLC97TM1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.52426
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-5452-01A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Stomach	GTEx Tissue Gene Expression Profiles 2023	-1.0	-0.575033
PC(18:0/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PEO4	DepMap CRISPR Gene Dependency	1.0	4.67556
Perturb_8759_KO_SETDB1_SRP141213	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	9.0423
PC(o-18:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
GSE165939_2_v_1_poldip2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(20:2(11Z,14Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
Perturb_6889_KO_PFDN5_SRP273783	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.80011
abnormal spleen morphology	IMPC Knockout Mouse Phenotypes	1.0	null
PC(dm18:1(11Z)/dm18:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-TSE9-0526-SM-3DB7Z	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.888592
Liver hepatocellular carcinoma_LIHC_TCGA-BC-A10Q-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_3845_KD_lncRNAAF339830_SRP161584	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.7633
PC(P-18:1(11Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_16953_KO_MLX_SRP183152	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.74232
endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.054148
GSE216043_10_v_9_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Paraflocculus, granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.16903
PC(18:3(9Z,12Z,15Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
GSE176008_4_v_1_azacitidine_human	RummaGEO Drug Perturbation Signatures	1.0	null
organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
PC(24:1(15Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
GSE231720,GSE231724_2_v_0_setd2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
mantle zone of m2Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.18492
Ventral tegmental nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.03282
MFE-319	COSMIC Cell Line Gene Mutation Profiles	1.0	null
POLR2A_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE143643,GSE143644_3_v_5_hdac3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(P-16:0/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE226355,GSE226357_1_v_0_ybx1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE149903_6_v_2_myd88_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(24:0/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
phagocytic vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
PC(20:4(5Z,8Z,11Z,14Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
VCaP	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.26841
GTEX-Q2AG-0426-SM-2S1PU	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Perturb_5630_KD_EWSFLI1_SRP340258	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.84613
GTEX-X585-0011-R6A-SM-46MVJ	GTEx Tissue Sample Gene Expression Profiles	1.0	1.37005
GTEX-XAJ8-0226-SM-4GIB2	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GTEX-SNOS-1426-SM-32PLY	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.944635
GSE220693_1_v_0_cgas_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(22:4(7Z,10Z,13Z,16Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
GSE102505_4_v_0_tunicamycin_human	RummaGEO Drug Perturbation Signatures	1.0	null
GTEX-S7SF-0001-SM-3K2BE	GTEx Tissue Sample Gene Expression Profiles	1.0	1.02335
lateral reticular nucleus (principal part)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.2332
GTEX-SIU7-0001-SM-3NMAW	GTEx Tissue Sample Gene Expression Profiles	1.0	1.40554
GSE225218_2_v_3_abcb1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE178255_5_v_0_tlr4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
H3K9me3_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
TBL1XR1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(18:1(11Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
increased IgG2b level	MGI Mouse Phenotype Associations 2023	1.0	null
GSE133516_0_v_3_kat7_human	RummaGEO Gene Perturbation Signatures	-1.0	null
r2 part of anteroventral cochlear nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.06542
PC(16:1(9Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(9Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
MKN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.883569
PC(20:3(8Z,11Z,14Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
CREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.594
FEZF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.9321
GSE118794_0_v_4_zmynd8_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ChIP_DMAP1_20946988	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.302337
PE(18:3(6Z,9Z,12Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-Q2-A5QZ-01A-11R-A28H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hemopoiesis	GO Biological Process Annotations 2025	1.0	null
Perturb_6782_KD_MED13/MED13L_ERP024018	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.76738
TCF7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.19773
H3K4me1_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
GTEX-R55E-0011-R8A-SM-2TC66	GTEx Tissue Sample Gene Expression Profiles	1.0	1.582
Spz1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.75
GTEX-N7MS-0011-R11A-SM-2HMJS	GTEx Tissue Sample Gene Expression Profiles	1.0	0.901115
PE(14:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
RPL13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.19015
PE(22:4(7Z,10Z,13Z,16Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_7704_KD_YTHDF1_SRP214946	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.67454
mononuclear phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.097355
GSE181003_1_v_0_selinexor_human	RummaGEO Drug Perturbation Signatures	1.0	null
H3K9ac_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
RAB33B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.11228
PC(o-18:1(9Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(24:0/16:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_9661_KD_circTTN1_SRP260174	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	7.33503
PMC9753996-jci-132-160767-s182.xlsx-EBF1_associated-A1BG_EBF1	Rummagene Transcription Factor Associations 2026	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(o-18:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
increased IgE level	MGI Mouse Phenotype Associations 2023	1.0	null
PE(20:5(5Z,8Z,11Z,14Z,17Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:2(9Z,12Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
endoplasmic reticulum part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Perturb_7914_KD_TOP1MT_SRP372079	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.57497
PE(24:1(15Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
mediodorsal nucleus of thalamus_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	0.859748
GTEX-OXRK-0826-SM-2HMK7	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
RCC10RGB	DepMap CRISPR Gene Dependency	1.0	7.99422
PE(P-16:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
Phosphatidate	MW Enzyme Metabolite Associations	1.0	null
PC(18:1(9Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
FLI1-20887958-HPC-7-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
PE(16:0/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Adipose - Subcutaneous	GTEx Tissue Gene Expression Profiles 2023	-1.0	-0.668469
G11870QZ	GlyGen Glycosylated Proteins	1.0	null
PC(P-16:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-QVUS-0011-R1A-SM-3GAD2	GTEx Tissue Sample Gene Expression Profiles	1.0	1.72135
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045756
Perturb_6311_KO_MIR221/MIR222_SRP073023	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.73898
bonemarrow	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.959223
PC(P-18:1(9Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE184884_6_v_5_gps2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE169152_5_v_1_ibrutinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE123825_0_v_3_glud1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
phagocytosis	GO Biological Process Annotations 2023	1.0	null
GTEX-U3ZN-0002-SM-3NMDF	GTEx Tissue Sample Gene Expression Profiles	1.0	1.02446
PE(22:4(7Z,10Z,13Z,16Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
PE(24:0/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.31369
PC(dm18:1(11Z)/dm16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
PC(15:0/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(15:0/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
phospholipase activity	GO Molecular Function Annotations 2023	1.0	null
Perturb_5297_KD_INSR_SRP045438	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.48519
LSM14B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95933
PE(18:3(6Z,9Z,12Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:0/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_15455_KD_E2F1_SRP165775	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	17.8697
PC(22:5(7Z,10Z,13Z,16Z,19Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-PWN1-0726-SM-48TDR	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
cellular biosynthetic process	GO Biological Process Annotations 2015	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_15558_KO_SLFN11_SRP327912	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.753
Declive (VI), granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.62679
SK-MEL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.91868
inferior olivary complex, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.83006
seminal vesicle	HPA Tissue Protein Expression Profiles	1.0	0.742911
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4642-01B-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(P-18:0/24:0)	HMDB Metabolites of Enzymes	1.0	null
GSE148510_3_v_2_bmal1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
vestibular nuclei, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.870891
GPX3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.4158
PMC5358377-pnas.1615015114.sd02.xlsx-Sheet1-genes_with_VDR_peaks_with_and_without_D3_VDR	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-T6MN-0011-R9A-SM-32QOZ	GTEx Tissue Sample Gene Expression Profiles	1.0	1.69754
Lung adenocarcinoma_LUAD_TCGA-50-8460-01A-11R-2326-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_12351_KD_DDX3X_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.64826
doxorubicin_mus musculus_gpl8321_gse17115	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
H3K4me1_thymus_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
PE(22:4(7Z,10Z,13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PCK2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00677
GSE178255_2_v_0_tlr4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(20:0/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
GSE156708_1_v_0_fbxo11_human	RummaGEO Gene Perturbation Signatures	-1.0	null
IRF8-27001747-CHIP-SEQ-BMDM-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
PE(20:2(11Z,14Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
HCC1428	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.896768
PC(P-18:1(9Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_13044_OE_FUS_SRP069787	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.85223
GTEX-R55G-0226-SM-48FEI	GTEx Tissue Sample Gene Expression Profiles	1.0	1.13888
Perturb_7647_KD_METTL3_SRP154311	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.78438
PC(18:1(11Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-5107-01A-01R-1420-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:3(5Z,8Z,11Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
H3K9me3_Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
PC(20:2(11Z,14Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
E2F4_02_200	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	3.58496
GTEX-X4XX-0011-R2A-SM-3P623	GTEx Tissue Sample Gene Expression Profiles	1.0	0.882002
TAL1-22897851-JUKARTE6-1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
SNU1214	CCLE Cell Line Gene Expression Profiles	-1.0	-1.55072
nuclear part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041467
Lung squamous cell carcinoma_LUSC_TCGA-56-8628-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
posteroventral (inferior) parietal cortex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.05578
PE(18:0/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
r8 part of basolateral reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.42913
H3K9ac_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
PC(20:1(11Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
intracellular organelle part	GO Cellular Component Annotations 2015	1.0	null
GSE181003_3_v_0_selinexor_human	RummaGEO Drug Perturbation Signatures	1.0	null
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.953818
GSE175787_8_v_7_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-51-4080-11A-01R-1758-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-5697-01A-11R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
arthritis	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	1.00628
HCC1806	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.641824
PE(20:0/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(24:1(15Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
carotid artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.363766
PE(22:0/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
SLC8B1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.71178
PC(P-16:0/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_15562_KO_SLFN11_SRP327912	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.013
dorsomedial part of VMH	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.21684
superficial stratum of r9BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.04917
medial geniculate complex, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	2.29073
Primary somatosensory area, trunk, layer 6a	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.65728
membrane-bounded vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
GTEX-S4UY-0526-SM-3K2AN	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
K029AX	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50368
PE(18:2(9Z,12Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_14281_KD_XRN1_ERP131052	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-7.36029
GTEX-WWYW-0526-SM-3NB2W	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
SPI1_GM12891_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(18:2(9Z,12Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-56-8624-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_11538_KD_YEATS2_SRP094447	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
laterostriatal stripe	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.38157
GTEX-QVJO-0011-R2A-SM-2S1QK	GTEx Tissue Sample Gene Expression Profiles	1.0	1.00676
GDM1	CCLE Cell Line Gene Expression Profiles	1.0	2.02249
Perturb_2064_KD_BMAL1_SRP041298	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.83538
layer 1 of PaS	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.09286
PC(P-18:1(11Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-QMRM-0008-SM-447B1	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Medial amygdalar nucleus, anterodorsal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.0775
PE(22:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(9Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
retroparafascicular area of thalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.2654
PE(20:0/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE129389_0_v_3_tropifexor_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Perturb_2533_KO_HSF1_SRP341615	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.83838
stratum lacunosum-moleculare of rostral CA1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.04854
Neurodegenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.385
GTEX-RNOR-0011-R4A-SM-3GAD3	GTEx Tissue Sample Gene Expression Profiles	1.0	1.14169
PC(14:1(9Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
RFX5_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(15:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
HDAC3_KO_GDS4886_66_mouse_Heart	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Msgn1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.0793
GTEX-WFG8-2126-SM-3GIKQ	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GTEX-RNOR-0011-R9A-SM-2TF52	GTEx Tissue Sample Gene Expression Profiles	1.0	1.66229
GTEX-U3ZH-0008-SM-4DXT2	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.887204
PC(22:5(4Z,7Z,10Z,13Z,16Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
synaptic vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.183328
HGC27	CCLE Cell Line Gene CNV Profiles	1.0	1.82201
PE(20:3(8Z,11Z,14Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
CLPP_KO_GSE40207_381_mouse_brain	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
PC(20:3(5Z,8Z,11Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:2(13Z,16Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
VIIAf	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.37304
TFAP2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	135.592
PC(18:3(6Z,9Z,12Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(16:1(9Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-7857-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC1319	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.27317
posterior (caudal) superior temporal cortex (area 22c)_8 yrs_M_12981	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.58484
PC(P-16:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
hsa-miR-4640-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
Perturb_2349_KD_PBRM1_SRP381930	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-13.4991
VZ in midcingulate neocortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.55245
PC(20:1(11Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14315_KO_PDE10A_SRP300922	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-6.14963
Perturb_6422_KD_LOC646329_SRP220725	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	18.2676
GTEX-O5YV-0326-SM-2I5H2	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.940474
PE(18:4(6Z,9Z,12Z,15Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
H3K4me1_megakaryocyte_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
PE(15:0/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
KDM2B-26808549-CHIP-SEQ-K562-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE203158_5_v_15_aire_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GTEX-OHPN-0011-R1A-SM-2I5GB	GTEx Tissue Sample Gene Expression Profiles	1.0	0.902422
GTEX-XOTO-0011-R9A-SM-4GICI	GTEx Tissue Sample Gene Expression Profiles	1.0	1.12236
PC(15:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-HV-A5A3-11A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
solitary nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.959555
r3 part of parvicellular medial vestibular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.11169
PMC9174882-EMMM-14-e15816-s004.xlsx-MYC_GeneSigs-YU_MYC_TARGETS_DN_MYC	Rummagene Transcription Factor Associations 2026	1.0	null
OSC-19	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
PE(22:5(4Z,7Z,10Z,13Z,16Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PMC3500769-srep00875-s3.xls-GATA3-Time_1_GATA3	Rummagene Transcription Factor Associations 2026	1.0	null
LMO2-20887958-HPC-7-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Perturb_12241_KO_ZMYND8_SRP343066	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.54916
GSE71491_0_v_1_cyclophosphamide_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
888	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.79271
Immunodeficiency 51	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.27
GSE159148_0_v_1_sdc1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(20:1(11Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
SFPI1-20887958-HPC-7-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Metabolism of lipids	Reactome Pathways 2024	1.0	null
Perturb_7810_KD_RAM_SRP091113	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	6.91268
GTEX-WH7G-0326-SM-3NMBH	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.914013
Brain disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.039
extracellular region part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.050904
Perturb_1892_KO_Klf2_SRP257906	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-1.43176
PE(18:1(9Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-FC-A66V-01A-21R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
bounding membrane of organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.003226
Perturb_6767_Mut_KDM6A_SRP343264	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.604
Hippocampal mossy fiber	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.583
GTEX-PWCY-1926-SM-3NB25	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.906726
PE(18:1(11Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GSE102505_1_v_2_tunicamycin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Perturb_3854_KO_ITPR3_SRP332879	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-5.82143
Head and Neck squamous cell carcinoma_HNSC_TCGA-CQ-7072-01A-21R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(20:0/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
GSE178255_5_v_7_tlr4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(18:3(6Z,9Z,12Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE172295_3_v_2_sh3gl1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(18:1(11Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Rectum adenocarcinoma_READ_TCGA-F5-6571-01A-12R-1830-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
red nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.16796
PE(22:5(7Z,10Z,13Z,16Z,19Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(14:1(9Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE84678,GSE93902_1_v_2_bcl11b_human	RummaGEO Gene Perturbation Signatures	1.0	null
PE(20:3(8Z,11Z,14Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_15185_KD_CPSF1_SRP186931	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	15.3894
PC(P-18:1(11Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-XOT4-0005-SM-4B64S	GTEx Tissue Sample Gene Expression Profiles	1.0	0.834276
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5191-01A-01R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
autoimmune disease of endocrine system	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.256652
Esophageal gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.068
PC(20:1(11Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE120612_6_v_1_etoposide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PE(22:1(13Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
Excretory gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Elf5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.7378
PE(P-16:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
ETS1	ENCODE Transcription Factor Targets	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-A6AP-01A-11R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(20:1(11Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
hypoglossal nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.18721
PE(18:3(6Z,9Z,12Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
vesicle-mediated transport	GO Biological Process Annotations 2015	1.0	null
layer IIIb of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.47017
FOXO1::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.5928
496100577_FWM_probable Alzheimer's disease_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.2956
Perturb_17427_KO_Shh_SRP141427	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-6.73604
NANOG	ChEA Transcription Factor Targets	1.0	null
PC(20:3(5Z,8Z,11Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
single-stranded DNA exodeoxyribonuclease activity	GO Molecular Function Annotations 2023	1.0	null
PC(18:3(6Z,9Z,12Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4839-01A-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(20:3(8Z,11Z,14Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
amygdaloid complex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.35536
GSE184902_4_v_0_adipor1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(24:1(15Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
parabigeminal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	3.3948
Lung adenocarcinoma_LUAD_TCGA-38-7271-01A-11R-2039-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Isolated growth hormone deficiency	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.497
PE(20:5(5Z,8Z,11Z,14Z,17Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-WFG7-0008-SM-4LMKB	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(o-24:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GSE92457_7_v_8_ethanol_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PC(o-22:0/22:3(10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE111102,GSE111105_1_v_0_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:4(7Z,10Z,13Z,16Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
GSE126402_2_v_0_tal1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Perturb_2430_KD_HOXA11_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.14717
RELA_GM19193_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(20:5(5Z,8Z,11Z,14Z,17Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_10251_KO_WT1_ERP126063	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.29244
GSE226793_1_v_0_ccr5_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
smooth muscle	HPA Tissue Protein Expression Profiles	-1.0	-1.14718
PC(20:2(11Z,14Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(24:1(15Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(16:0/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_2133_KD_HAPSTR1_SRP377309	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.36227
PC(22:4(7Z,10Z,13Z,16Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-KK-A7AV-01A-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_8804_KD_PTB_SRP069229	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.53677
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.969614
amygdaloid complex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.979809
Primary somatosensory area, barrel field, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.66629
GTEX-X4EO-0526-SM-3P5Z3	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(22:2(13Z,16Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
cerebellar nuclei of CbV	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.29205
Perturb_8883_KD_CSL_SRP142324	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-6.04945
PC(20:3(8Z,11Z,14Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Glycerophospholipid biosynthesis	Reactome Pathways 2014	1.0	null
PMC12055596-41375_2025_2570_MOESM4_ESM.xlsx-PDX1-Unnamed_13_PDX1	Rummagene Transcription Factor Associations 2026	1.0	null
CP in caudal subicular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.16019
LS180	CCLE Cell Line Gene Expression Profiles	-1.0	-1.79826
GSE216043_7_v_9_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Perturb_9113_OE_FOXO1A3_SRP188991	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.84897
Perturb_8893_OE_YAP1_SRP151027	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
inner CP in posteroinferior (ventral) parietal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.936826
inner SZ in caudal midinferior temporal cortex (area TF)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.59536
VDR-20736230-LYMPHOBLASTOID-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Flocculus, granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.09006
PE(18:1(11Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
hippocampus (hippocampal formation)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.07813
GSE158834_12_v_3_palmitic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PC(18:2(9Z,12Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
striatum_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-0.914393
PC(16:1(9Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
ZNF214	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.3377
Esophagus	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PC(22:2(13Z,16Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
sparse hair	MGI Mouse Phenotype Associations 2023	1.0	null
TAL1_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(18:3(6Z,9Z,12Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
RELA_GM15510_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-R55E-0011-R9A-SM-2TC6C	GTEx Tissue Sample Gene Expression Profiles	1.0	1.87512
FOXJ2::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8207
BCL6B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.5985
endocytic vesicle	GO Cellular Component Annotations 2023	1.0	null
PE(22:5(4Z,7Z,10Z,13Z,16Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(16:1(9Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(6Z,9Z,12Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
Integrin alphaM-beta2 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.539
Perturb_11533_KD_ATAC1_SRP109127	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
NCIH1581	CCLE Cell Line Gene CNV Profiles	1.0	1.64321
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2GL-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_4590_KO_Ezh2/Runx1_SRP066416	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-1.43438
GSE240439_1_v_0_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
PC(20:3(5Z,8Z,11Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B8-5164-01A-01R-1420-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CCSAP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75212
PE(18:4(6Z,9Z,12Z,15Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
HCFC1_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ELK1	ENCODE Transcription Factor Targets	1.0	null
Rectum adenocarcinoma_READ_TCGA-AF-2692-11A-01R-A32Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE157777_2_v_0_foxa3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044941
PMC13127299-mmc2.xlsx-PBX1_kdRNAseq-hgnc_symbol_PBX1	Rummagene Transcription Factor Associations 2026	1.0	null
abducens nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.943259
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
NCIH2141	CCLE Cell Line Gene Expression Profiles	-1.0	-1.51591
PE(20:1(11Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-7315-11A-01R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-CH-5771-01A-21R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(14:1(9Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
Human - Lung v1 - L1 - Plasmacytoid Dendritic	HuBMAP Azimuth Cell Type Annotations	1.0	null
Perturb_2360_KD_TSHZ3_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	14.2694
Poisoning	CTD Gene-Disease Associations	1.0	1.29657
Prostate adenocarcinoma_PRAD_TCGA-G9-6379-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(20:5(5Z,8Z,11Z,14Z,17Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
placenta	HPA Tissue Protein Expression Profiles	1.0	0.742911
PC(22:1(13Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_1001_KO_Adar1_SRP360154	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-8.26586
PC(18:1(11Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Human - Bone Marrow - L2 - Precursor Plasmacytoid Dendritic Cell	HuBMAP Azimuth Cell Type Annotations	1.0	null
PC(P-18:0/15:0)	HMDB Metabolites of Enzymes	1.0	null
KMS-11	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.344
AP-4	MotifMap Predicted Transcription Factor Targets	1.0	null
AR-19668381-PC3-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
CEBPZ_02_176	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	3.58496
establishment of localization	GO Biological Process Annotations 2015	1.0	null
Water	HMDB Metabolites of Enzymes	1.0	null
r8 part of linear nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.37766
GTEX-S4Q7-1526-SM-3K2AG	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
BCL3	ENCODE Transcription Factor Targets	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2MG-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE184884_7_v_1_gps2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(16:0/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
plant reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.212586
Perturb_15444_KD_HDAC5_SRP273298	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.25563
Intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.152
PC(o-24:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(9Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
cytoplasmic membrane-bounded vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
GSE120612_6_v_3_etoposide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PC(20:3(8Z,11Z,14Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(6Z,9Z,12Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:2(13Z,16Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(9Z,12Z,15Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
early endosome	GO Cellular Component Annotations 2025	1.0	null
PE(18:0/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
GSE180200,GSE180201_3_v_0_qpctl_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06289
PE(18:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
rheumatic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.720461
Perturb_6685_KD_SMARCA2_SRP378606	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
urinary bladder	HPA Tissue Protein Expression Profiles	1.0	0.742911
corneal opacity	MGI Mouse Phenotype Associations 2023	1.0	null
AM38	DepMap CRISPR Gene Dependency	1.0	3.82243
Perturb_14649_KD_Paf1_SRP297013	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	13.8369
superficial layers of caudal presubiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.23072
GSE111102,GSE111105_1_v_5_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(22:1(13Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
TWIST1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6568
GSE205291,GSE205292_1_v_3_drd2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
H3K4me3_mononuclear cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A20W-11A-11R-A14Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
choroid plexus of the lateral ventricle	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.8922
Orbital area, medial part, layer 2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.76948
KMS12BM	CCLE Cell Line Gene Expression Profiles	1.0	1.6144
GTEX-WFON-1726-SM-4LVMQ	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
H3K4me3_CH12.LX_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
PMC8020666-pnas.2015855118.sd11.xlsx-LPS_attenuatedResponse-Unnamed_13_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
PC(20:3(5Z,8Z,11Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(16:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GSE166315_5_v_0_docetaxel_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
dorsolateral part of Med	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.27235
Mucosa	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PE(20:3(8Z,11Z,14Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:0/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(6Z,9Z,12Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_12148_OE_CENPA_ERP125655	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
PC(16:1(9Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PC(18:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
GTEX-T6MN-0011-R8A-SM-32QP3	GTEx Tissue Sample Gene Expression Profiles	1.0	1.00623
organelle part	GO Cellular Component Annotations 2015	1.0	null
GSE171837_0_v_2_bortezomib_human	RummaGEO Drug Perturbation Signatures	1.0	null
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Glycerophospholipid biosynthesis	Reactome Pathways 2024	1.0	null
PMC11892598-pnas.2417308122.sd05.xlsx-DEGs_of_RORC_cluster-Unnamed_1_RORC	Rummagene Transcription Factor Associations 2026	1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Interferon regulatory factor 5 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.232
Perturb_3154_KD_IGFBP3_SRP383337	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.48381
SP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41998
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7178-01A-21R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
osteoclasts	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.23095
Perturb_3523_KD_TASOR_SRP337789	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	6.51082
trans-Golgi network	GO Cellular Component Annotations 2023	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
HCC1395	CCLE Cell Line Gene Expression Profiles	-1.0	-2.03724
PE(P-18:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(24:0/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:1(11Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE149903_5_v_7_myd88_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
medial (fastigial) cerebellar nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.29593
H3K9me3_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
HDAC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(16:0/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GFI1B-20887958-HPC-7-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-WL46-2826-SM-3LK81	GTEx Tissue Sample Gene Expression Profiles	1.0	0.969634
GTEX-WFON-0126-SM-4LVM9	GTEx Tissue Sample Gene Expression Profiles	1.0	1.08212
GTEX-T5JW-1726-SM-3GADN	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.876056
PC(18:3(6Z,9Z,12Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PMC9894241-pnas.2211429119.sd05.xlsx-G1_REST-Dataset_S5_Differentially_expressed_genes_in_G1-G8_REST	Rummagene Transcription Factor Associations 2026	1.0	null
PC(15:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_12365_KD_WBP11_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.75497
PE(22:1(13Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_16530_OE_Plagl2_SRP150086	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	9.60527
GSE180200,GSE180201_15_v_1_qpctl_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
bleomycin_mus musculus_gpl1261_gse25640	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
PE(18:3(6Z,9Z,12Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:2(13Z,16Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GSE234340_4_v_7_muc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
TRUB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.44171
r2 part of cochlear sensory column	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.03279
CHD2_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-A632-01A-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_2425_KD_BNC2_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.83216
Perturb_7935_KO_VTRNA1_SRP252980	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-6.4854
Anterodorsal preoptic nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.1258
Perturb_6490_KD_NONO_SRP350991	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-19.1549
Perturb_7958_KD_ZCCHC8/ZFC3H1_SRP222099	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-6.08954
Uterine Carcinosarcoma_UCS_TCGA-N8-A56S-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lymphoma_burkitts(Daudi)	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.847983
TAL1	ENCODE Transcription Factor Targets	1.0	null
GSE151612_4_v_2_pracinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
membrane	GO Cellular Component Annotations 2015	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.01654
PC(20:5(5Z,8Z,11Z,14Z,17Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
ELK1::SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.5819
plexiform layer of TuPal	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.11645
Perturb_14328_KD_GRHL2_SRP157074	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	16.8617
PC(22:4(7Z,10Z,13Z,16Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(6Z,9Z,12Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:0/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(11Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:3(8Z,11Z,14Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:1(11Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:0/24:0)	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(9Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-OIZI-0008-SM-2XCFD	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.960137
PE(18:2(9Z,12Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
PE(P-16:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PMC12048643-44318_2025_409_MOESM3_ESM.xlsx-regulonTargets-EGR1_EGR1	Rummagene Transcription Factor Associations 2026	1.0	null
PE(20:4(8Z,11Z,14Z,17Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
GSE144231_2_v_1_cxcr2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
dorsal cochlear nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.966804
POU2F2_GM12891_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(18:0/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(9Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:2(9Z,12Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(9Z,12Z,15Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_9107_KD_G6PD_SRP287480	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.60006
PC(22:1(13Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7235-11A-01R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MV411	CCLE Cell Line Gene Expression Profiles	1.0	1.58639
H3K79me2_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
subbrachial nucleus, rostral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.26328
GTEX-XMK1-0005-SM-4B665	GTEx Tissue Sample Gene Expression Profiles	1.0	0.876728
PMC5113908-pone.0166185.s004.xlsx-Supp_1-Supplementary_Table_1_mRNA_expression_correlates_with_STAT3_phosphorylation_for_1279_genes_STAT3	Rummagene Transcription Factor Associations 2026	1.0	null
PC(22:0/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
G84	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06457
PE(22:2(13Z,16Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4873-01A-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MON	DepMap CRISPR Gene Dependency	1.0	9.95703
Ansiform lobule	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.19447
PE(20:5(5Z,8Z,11Z,14Z,17Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-6487-01A-11R-1873-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-VM-A8C9-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(P-18:0/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
ARL6IP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.53387
PC(dm16:0/dm16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(P-16:0/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE210580_4_v_1_rag2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GATAD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.97155
GSE203158_1_v_14_aire_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(18:3(6Z,9Z,12Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:1(13Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_16793_KD_SPIN1_SRP171066	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.86252
GTEX-S3XE-2026-SM-3K2B5	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
UBTF_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
glycerolipid biosynthetic process	GO Biological Process Annotations 2015	1.0	null
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28215
GTEX-S3XE-0626-SM-4AD6B	GTEx Tissue Sample Gene Expression Profiles	1.0	0.901812
MAF-26560356-CHIP-SEQ-TH1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
integral component of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
Purkinje cell layer of CbHCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.13364
PE(18:0/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(24:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-7686-01A-11R-2256-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(11Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
GTPBP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.6003
GTEX-O5YT-1326-SM-3MJGR	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.937793
GSE136742,GSE136744_0_v_3_setd2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE196117_1_v_0_clarithromycin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_98_KD_INTS8_SRP262320	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	9.93036
PE(14:1(9Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:0/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-S4P3-0226-SM-3K2BD	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(22:5(4Z,7Z,10Z,13Z,16Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_2304_KD_CDC73_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.24786
PE(22:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
H3K4me3_megakaryocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Perturb_12290_KO_ERO1_ERP137480	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.26739
Zfp335	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.0357
dorsolateral prefrontal cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.77585
GSE147056_4_v_1_actl6b_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE109913_1_v_2_bleomycin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
SPI1-22096565-GC-B-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
PE(20:3(8Z,11Z,14Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_12369_KD_POLE_SRP286423	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.75344
PC(22:4(7Z,10Z,13Z,16Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
endocytic vesicle	GO Cellular Component Annotations 2015	1.0	null
S100A9 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.479
Organism form	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PMC8709578-elife-69843-supp2.xlsx-HSF1_KO_2_Ctr-Nearest_Ensembl_HSF1	Rummagene Transcription Factor Associations 2026	1.0	null
PE(14:0/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(8Z,11Z,14Z,17Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(6Z,9Z,12Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_10256_KD_TP53_SRP346937	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-5.08712
Perturb_38_KD_ATRX_SRP308220	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
PE(14:1(9Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(11Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
H3K9me3_U2OS_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
GSE153341_2_v_3_atf3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
cerebellar cortex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.02173
Perturb_1240_KD_SRSF3_SRP033393	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-7.88036
PE(20:4(5Z,8Z,11Z,14Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:1(13Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE155305_3_v_1_ifitm3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Oil gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.663
Perturb_1179_KD_RUNX1_ERP128097	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
PE(18:4(6Z,9Z,12Z,15Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.104
HDAC1	ENCODE Transcription Factor Targets	1.0	null
PMC9904760-elife-79363-supp2.xlsx-MDS1-Gene_MECOM	Rummagene Transcription Factor Associations 2026	1.0	null
GSE178255_3_v_7_tlr4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
EP300_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-XMD3-0006-SM-4AT5X	GTEx Tissue Sample Gene Expression Profiles	1.0	1.05182
PC(14:0/14:0)	HMDB Metabolites of Enzymes	1.0	null
dactinomycin_homo sapiens_gpl7172_gse12459	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
PE(18:1(9Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
ACYP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.09156
superficial stratum of m2ADL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.95656
PE(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
integument phenotype	MPO Gene-Phenotype Associations	1.0	null
H3K9me3_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
PE(P-16:0/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Human - Lung v1 - L2 - Plasmacytoid Dendritic	HuBMAP Azimuth Cell Type Annotations	1.0	null
Perturb_8922_KD_ARID1A_SRP192521	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.45273
PE(P-18:1(9Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(14:0/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_2303_KD_BRCA2_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-7.52063
Perturb_452_OE_MYC_SRP171977	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
PE(20:1(11Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Cutaneous lupus erythematosus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.013
PC(P-18:0/14:0)	HMDB Metabolites of Enzymes	1.0	null
biological_process	GO Biological Process Annotations 2015	1.0	null
trans-golgi network membrane	GO Cellular Component Annotations 2015	1.0	null
PE(22:2(13Z,16Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A183-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K4me1_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PE(24:1(15Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-RVPV-0008-SM-47JYW	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GSE144443_5_v_7_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GSE112860_5_v_4_prdm16_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE101336_1_v_0_decitabine_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
endoplasmic reticulum part	GO Cellular Component Annotations 2015	1.0	null
GSE218580_1_v_4_fentanyl_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
cellular process	GO Biological Process Annotations 2015	1.0	null
PC(P-18:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(9Z,12Z,15Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_9007_KD_ETV6_SRP273428	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.45796
PC(22:1(13Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
SDF2L1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.87546
PE(22:5(4Z,7Z,10Z,13Z,16Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
phagocytosis	GO Biological Process Annotations 2025	1.0	null
gata1_15860665_megakaryocytes_lof_mouse_gpl1261_gds1245	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.654592
Lymph_Node-plasmacytoid dendritic cell	Tabula Sapiens Gene-Cell Associations	1.0	0.0694135
BT-483	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4738
Perturb_14098_KD_AHR_SRP154013	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-6.50557
WRNIP1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
fastigial nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.836952
Brain Lower Grade Glioma_LGG_TCGA-CS-4941-01A-01R-1470-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
AR-19668381-PC3-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
GSE178255_3_v_6_tlr4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
lymph node hyperplasia	MGI Mouse Phenotype Associations 2023	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
GSE217776,GSE217829_1_v_6_sgf29_human	RummaGEO Gene Perturbation Signatures	-1.0	null
H3K27ac_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
orbital frontal cortex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.1581
GTEX-SE5C-0626-SM-2XCDV	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
inferolateral temporal cortex (area TEv, area 20)_8 yrs_M_12981	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	0.841262
Perturb_720_KO_ACLY_SRP403241	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.96046
HDAC6_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Perturb_12308_KD_CDK12_SRP073459	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
PC(18:1(9Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
cerebral white matter	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.798958
GSE179775,GSE198264_0_v_2_ctcf_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Uropygial gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.823
PE(16:0/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(4Z,7Z,10Z,13Z,16Z)/dm18:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_8488_KO_GOLPH3_SRP401813	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
r7 part of basolateral reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.19734
H3K4me3_brown adipose tissue_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.883569
metabolic process	GO Biological Process Annotations 2015	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	1.81611
PC(20:3(8Z,11Z,14Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
GSE215351,GSE215794_1_v_0_kdm8_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4887-01A-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
sclerosis	GeneRIF Biological Term Annotations	1.0	null
PC(18:2(9Z,12Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
PC(16:0/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:4(7Z,10Z,13Z,16Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
GSE143955_1_v_0_ripk1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
superficial stratum of r9BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.66995
Cognition Disorders	CTD Gene-Disease Associations	1.0	1.20262
PE(18:3(9Z,12Z,15Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
animal	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.0758
GSE210885_2_v_4_klf4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_11448_KD_PON2_SRP398037	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.3145
PMC8144624-41598_2021_90212_MOESM2_ESM.xlsx-6_hrs_ps_LPS-merged_Gene_ID_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
dorsolateral prefrontal cortex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.831521
PC(15:0/15:0)	HMDB Metabolites of Enzymes	1.0	null
PC(16:1(9Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_10188_KD_JMJD1C_SRP050058	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	9.68543
PE(15:0/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
primary auditory cortex (core)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.04327
GSE110178_2_v_7_tranylcypromine_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
BFTC-905	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.61968
PMC10169359-13058_2023_1653_MOESM1_ESM.xlsx-Table_S9-Table_S9_Genes_differentially_expressed_between_TP53_mutant_and_wild-type_pBCs_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
intermediate stratum of m2Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.02529
CLPP_KO_GDS4791_377_mouse_brain	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
NCI-H1299	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SARS-CoV_24Hour_20090954_GSE17400	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.97529
PE(20:4(8Z,11Z,14Z,17Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
GSE169152_3_v_0_ibrutinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
A3/KAW	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21904
NCIH2227	CCLE Cell Line Gene Expression Profiles	-1.0	-1.82846
PC(20:2(11Z,14Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(15:0/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
dorsal thalamus_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.01079
LMNB1_02_195	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	5.35755
subgranular zone of rostral dentate gyrus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.31507
GTEX-X585-0011-R8A-SM-46MUX	GTEx Tissue Sample Gene Expression Profiles	1.0	1.00387
PE(P-18:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.886242
PE(22:2(13Z,16Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(24:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
HCFC1	ENCODE Transcription Factor Targets	1.0	null
striatum_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.19456
PC(14:1(9Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:0/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:3(8Z,11Z,14Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
CEBPB_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Perturb_9164_KD_SCIRT_SRP353496	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.32942
496100425_TCx_no dementia_TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.46616
PE(18:1(11Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-SSA3-0002-SM-3P61R	GTEx Tissue Sample Gene Expression Profiles	1.0	1.5652
CD200	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.55404
Perturb_4929_OE_KLF17_ERP131758	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.80851
Hypopituitarism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.287
HDAC2	ENCODE Transcription Factor Targets	1.0	null
PE(20:5(5Z,8Z,11Z,14Z,17Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Metabolism of lipids and lipoproteins	Reactome Pathways 2014	1.0	null
PE(14:0/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE126402_5_v_7_tal1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
amygdaloid complex_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.824179
Perturb_14056_OE_NFIB_SRP281947	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	14.9563
GSE223008_5_v_2_calhm6_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
CCC5	DepMap CRISPR Gene Dependency	1.0	8.11856
PMC5105166-ncomms13331-s5.xlsx-Sheet1-Supplementary_Data_4_Gene_expression_signature_of_MEF2D-rearranged_cases_stranded_data_only_MEF2D	Rummagene Transcription Factor Associations 2026	1.0	null
DYNLL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.49745
PE(20:5(5Z,8Z,11Z,14Z,17Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE68155_1_v_0_gpr3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-96-A4JL-01A-11R-A24Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
lymphoid cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
ZKSCAN5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.1028
PC(20:4(5Z,8Z,11Z,14Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Rectum adenocarcinoma_READ_TCGA-AH-6643-11A-01R-1830-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(18:3(6Z,9Z,12Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(o-14:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
hippocampus	HPA Tissue Protein Expression Profiles	-1.0	-1.14718
PE(22:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-85-7710-11A-01R-2125-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ventrolateral prefrontal cortex_4 mos_M_12890	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.09015
GSE146865,GSE146866_1_v_0_saracatinib_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Arthritis, Rheumatoid	HuGE Navigator Gene-Phenotype Associations	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:4(7Z,10Z,13Z,16Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
HDAC6	ENCODE Transcription Factor Targets	1.0	null
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05226
cerebellar vermis	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.19924
Perturb_18442_KD_YAP1/WWTR1_SRP303519	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.58216
PE(18:3(6Z,9Z,12Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:1(11Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(9Z,12Z,15Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-XMD1-0011-R2B-SM-4AT5N	GTEx Tissue Sample Gene Expression Profiles	1.0	0.845943
GSE203158_0_v_8_aire_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_1189_KD_BCL6_SRP187038	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
ECC12	CCLE Cell Line Gene Expression Profiles	-1.0	-2.1722
GTEX-T5JW-0126-SM-4DM6K	GTEx Tissue Sample Gene Expression Profiles	1.0	1.16857
superficial stratum of r4BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.25101
PE(P-18:1(11Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05226
OGFR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80339
EM2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4123
18713946-TableS3	GeneSigDB Published Gene Signatures	1.0	null
GTEX-OHPN-0008-SM-4E3HW	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(22:5(7Z,10Z,13Z,16Z,19Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-UJHI-1626-SM-3DB9A	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.902367
GSE175787_4_v_7_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE224556,GSE224557_6_v_1_aire_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
CHD1_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cingulate gyrus, parietal part, left, superior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.1216
Lung squamous cell carcinoma_LUSC_TCGA-66-2767-01A-01R-0851-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-U4B1-0526-SM-4DXTK	GTEx Tissue Sample Gene Expression Profiles	1.0	0.904692
PE(18:3(9Z,12Z,15Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE65617_5_v_3_aire_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-O5YT-0926-SM-48TDG	GTEx Tissue Sample Gene Expression Profiles	1.0	0.915562
Microglial cell_Brain_Mouse	CellMarker Gene-Cell Type Associations	1.0	null
PC(14:1(9Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
BHLHE40_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(18:2(9Z,12Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
amygdaloid complex_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.61966
lateral orbital frontal cortex (area 12/47)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.42685
yy1_22711985_skeletal_muscle_lof_mouse_gpl8321_gse39009	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.330229
heart	GTEx Tissue Gene Expression Profiles	-1.0	-1.05786
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-6481-01A-11R-1873-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC6815035__F5	PFOCR Pathway Figure Associations 2023	1.0	null
PC(24:1(15Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Parotid gland duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.922
ZNF449	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	66.4016
Colon Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
TCF12/HEB-22897851-JUKARTE6-1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
PE(18:2(9Z,12Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
EP300_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(18:1(9Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:0/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(16:0/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Nucleus of the solitary tract, gelatinous part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.00247
PE(22:5(7Z,10Z,13Z,16Z,19Z)/dm18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
hematopoietic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075234
PE(22:0/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:1(11Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
GSE110178_5_v_3_tranylcypromine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
CTNNB1-20460455-HCT116-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
RARB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5874
PE(24:1(15Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
MEF2A_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(16:0/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Folium-tuber vermis (VII)	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.78122
PE(20:4(8Z,11Z,14Z,17Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.832763
PC(24:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-U8XE-0726-SM-3DB8O	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(14:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
NR0B1-18358816-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
single-organism transport	GO Biological Process Annotations 2015	1.0	null
PE(20:2(11Z,14Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PMC12068594-pgen.1011693.s007.xlsx-MCR_vs_MCW-gene_id_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
GSE102505_4_v_3_tunicamycin_human	RummaGEO Drug Perturbation Signatures	1.0	null
GAS2L1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.91852
PE(P-18:1(9Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
LXR-22292898-THP-1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
PC(20:2(11Z,14Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(24:0/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
Rectum adenocarcinoma_READ_TCGA-AF-2691-11A-01R-A32Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
dorsolateral prefrontal cortex_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.923065
GTEX-S7PM-0008-SM-3NM9Q	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.940256
GSE157960_0_v_3_progesterone_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GTEX-QCQG-2126-SM-2S1P8	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GTEX-X261-0011-R11A-SM-4E3JY	GTEx Tissue Sample Gene Expression Profiles	1.0	1.10934
PC(22:1(13Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
phosphoric ester hydrolase activity	GO Molecular Function Annotations 2015	1.0	null
PC(P-18:1(11Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:2(13Z,16Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PE(16:0/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(9Z,12Z,15Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
KNTC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.27656
muscle	GTEx Tissue Gene Expression Profiles	-1.0	-1.83631
GSE226091,GSE226092_3_v_1_sall1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE116810_2_v_3_selinexor_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE135334,GSE136010_2_v_3_tet2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(o-20:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GSE246911,GSE246913_4_v_1_arid1a_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:0/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-T5JW-1826-SM-3GAE1	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(20:4(8Z,11Z,14Z,17Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:2(13Z,16Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
Rheumatoid Arthritis	DisGeNET Gene-Disease Associations	1.0	null
GTEX-WHPG-2226-SM-3NMBO	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.938827
PC(20:3(8Z,11Z,14Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_6939_KD_EP300_SRP068733	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-15.9738
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-5461-01A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-V1D1-0008-SM-4JBIJ	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
CTCF-21964334-BJAB-B-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
ventrolateral prefrontal cortex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.7014
PC(20:3(8Z,11Z,14Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-77-8131-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE178255_5_v_4_tlr4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE120595_5_v_4_arid2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(P-18:1(9Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-SJXC-0005-SM-2XCE7	GTEx Tissue Sample Gene Expression Profiles	1.0	1.35731
PAX5_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.939523
SP in ventromedial extrastriate cortex (VP)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.69229
JHU-011	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3957
GSE124410_3_v_0_stk40_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(18:3(9Z,12Z,15Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A1MP-01A-11R-A14Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_10221_KO_TNFAIP6_ERP126958	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.37599
PE(18:0/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(11Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_2074_KD_BMAL1_SRP041298	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.90543
Perturb_272_KO_ADIRFAS786_SRP366780	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-5.89914
PE(18:3(6Z,9Z,12Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
b-lymphocyte	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
PE(P-18:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(8Z,11Z,14Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_10193_KD_TAF1_SRP149373	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-14.9591
thrombocytopenia	MGI Mouse Phenotype Associations 2023	1.0	null
GSE154081_1_v_0_sildenafil_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PC(18:3(9Z,12Z,15Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
MZ in dorsomedial parietal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.01719
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4816-01A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE137144_5_v_1_nlrp3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(20:2(11Z,14Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
BATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.021
TNRC6C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.42013
PE(24:1(15Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
irf1_17409403_nih3t3_gof_mouse_gpl81_gds2752	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-3.06581
GSE164306_5_v_0_tsc1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(18:3(9Z,12Z,15Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-XQ3S-0426-SM-4BOOA	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.896231
intracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.055536
PE(15:0/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_8287_KD_DDX55_SRP013565	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.14017
Perturb_15163_KD_PGR_SRP097736	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.39826
GSE113385_0_v_1_six1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Perturb_12314_KO_AGO1_SRP136692	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
Heart	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.51226
GSE178255_2_v_6_tlr4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
H3K4me3_B cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
inner SZ in posterior parahippocampal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.13082
lipid catabolic process	GO Biological Process Annotations 2015	1.0	null
PC(22:1(13Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:0/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:1(13Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(24:0/15:0)	HMDB Metabolites of Enzymes	1.0	null
PC(o-22:1(13Z)/22:3(10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(24:0/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
superficial stratum of r5Co	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.40888
GSE225869_2_v_0_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZNF331	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.9454
PE(18:4(6Z,9Z,12Z,15Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_9637_KO_CHCHD2_SRP212876	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.40788
ZNF692	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.7162
superficial stratum of Ist	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.39737
GTEX-WI4N-2726-SM-3LK7Y	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.846917
enlarged spleen	IMPC Knockout Mouse Phenotypes	1.0	null
PE(22:2(13Z,16Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE183890_2_v_6_ifitm3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(14:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(9Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:1(13Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05311
POLR2AphosphoS5_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(P-18:1(11Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
fh4	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.17
PC(22:5(7Z,10Z,13Z,16Z,19Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(9Z,12Z,15Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_15176_KD_CDH3_SRP366922	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	14.5515
Perturb_7821_Mut_BAZ1A_SRP100570	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-10.7638
G37881RL	GlyGen Glycosylated Proteins	1.0	null
PE(20:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
H3K4me3_HL-60_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
PE(24:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(6Z,9Z,12Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:2(13Z,16Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-GV-A3QG-01A-11R-A220-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCIN87	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54924
Perturb_2359_KD_TRIM25_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	10.5824
HS675T	CCLE Cell Line Gene Expression Profiles	-1.0	-1.53846
hematopoietic cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Perturb_17148_KO_H1_SRP076475	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.74362
Perturb_6310_KO_MIR221_SRP073023	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.72842
hypersensitivity reaction type ii disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.388166
GTEX-QLQ7-0008-SM-447AW	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Rectum adenocarcinoma_READ_TCGA-DC-5337-01A-01R-1660-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lupus erythematosus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.604
PMC3805607__F2	PFOCR Pathway Figure Associations 2024	1.0	null
PMC10732413-pone.0296029.s013.xlsx-P53_CRISPR-Unnamed_10_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
bonemarrow_6a	HPA Tissue Sample Gene Expression Profiles	1.0	1.07539
Hematopoietic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.066
b220.bcell	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.46752
HT	CCLE Cell Line Gene Expression Profiles	1.0	1.45125
layer II of area 35c	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.29225
PE(22:5(4Z,7Z,10Z,13Z,16Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:3(8Z,11Z,14Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
outer CP in temporal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.12151
GTEX-XUZC-2126-SM-4BRW8	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(24:0/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Choline	HMDB Metabolites of Enzymes	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/dm18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-S3XE-1626-SM-3K2AJ	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
cell part	GO Cellular Component Annotations 2015	1.0	null
posteroventral (inferior) parietal cortex_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.0493
SP1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Prelimbic area, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.50018
GTEX-T6MO-0008-SM-4DM6T	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(15:0/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE211983_0_v_3_nicotine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
iPS-18 Cells	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	1.0	1.02779
ventrolateral prefrontal cortex_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.00279
GSE226091,GSE226092_0_v_1_sall1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PAX5_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(20:5(5Z,8Z,11Z,14Z,17Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
RELA_GM10847_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TEAD4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.8169
GSE175787_11_v_10_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(9Z,12Z,15Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Scleroderma	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.564
PE(20:5(5Z,8Z,11Z,14Z,17Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PMC10170086-41598_2023_34519_MOESM6_ESM.xlsx-Shee2-The_differentially_expressed_genes_between_the_BARX2_high_and_BARX2_low_group_of_LIHC_patients_BARX2	Rummagene Transcription Factor Associations 2026	1.0	null
Perturb_15419_KD_RNF2_SRP116142	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	5.86755
Perturb_13441_KD_Tada1_SRP119047	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	3.1075
Perturb_7760_KD_RRP6/DIS3_SRP337423	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-6.8859
PE(18:3(6Z,9Z,12Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE140651,GSE140653_5_v_7_med1_human	RummaGEO Gene Perturbation Signatures	1.0	null
PC(22:4(7Z,10Z,13Z,16Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(6Z,9Z,12Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
susceptibility	GeneRIF Biological Term Annotations	1.0	null
GSE143830_0_v_1_trex1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042452
PC(20:4(5Z,8Z,11Z,14Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
striatum_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.942975
tonsil	HPA Tissue Gene Expression Profiles	1.0	0.907821
GSE176008_7_v_5_azacitidine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GTEX-PWOO-0826-SM-48TCL	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Kidney renal clear cell carcinoma_KIRC_TCGA-A3-3351-01A-02R-1325-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(18:3(6Z,9Z,12Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Orbital area, medial part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.07271
GTEX-S7SF-0526-SM-3K2BC	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(20:4(8Z,11Z,14Z,17Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
ERF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6488
PE(20:3(5Z,8Z,11Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14815_KD_Eral1_SRP293259	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-1.64152
PE(20:5(5Z,8Z,11Z,14Z,17Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
PE(16:0/24:0)	HMDB Metabolites of Enzymes	1.0	null
GPC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.45414
RFX5	ENCODE Transcription Factor Targets	1.0	null
Plasmacytoid dendritic cell(pDC)_Nasopharynx_Human	CellMarker Gene-Cell Type Associations	1.0	null
PC(P-16:0/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
FLI1-20887958-HPC-7-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
NFIX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.2539
GTEX-Q2AG-0011-R8A-SM-2HMK5	GTEx Tissue Sample Gene Expression Profiles	1.0	0.914233
PC(o-22:2(13Z,16Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
dorsal thalamus_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.88907
Holocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.749
PE(20:3(5Z,8Z,11Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(11Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(11Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE140651,GSE140653_2_v_7_med1_human	RummaGEO Gene Perturbation Signatures	1.0	null
PE(P-18:1(11Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_296_OE_ERG/MYC_SRP069177	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.39579
PC(20:3(8Z,11Z,14Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CX-A4AQ-01A-11R-A24Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE120595_5_v_1_arid2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE203158_0_v_13_aire_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_4347_OE_LEF1_SRP165165	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.86546
GSE130690,GSE130692_1_v_0_sirt6_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.85076
PE(24:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(16:1(9Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_1168_KD_ETV6_ERP128093	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
GTEX-VJWN-0426-SM-3GIJI	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GSE110268_1_v_3_foxd1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
posteroventral (inferior) parietal cortex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.61778
dorsal part of alar p2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.20397
PE(20:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Mesothelioma_MESO_TCGA-SH-A7BC-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(20:5(5Z,8Z,11Z,14Z,17Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(5Z,8Z,11Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:2(13Z,16Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Thorax	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
CardiacMyocytes	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-2.59214
JL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.65557
IRF8-21731497-J774-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
PC(P-16:0/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-POMQ-0126-SM-48TD6	GTEx Tissue Sample Gene Expression Profiles	1.0	1.37309
Perturb_2318_KD_PRPF8_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-5.29482
PE(20:3(5Z,8Z,11Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(P-16:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:0/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
inner CP in midinferior temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.867723
paraterminal gyrus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.75372
PE(22:1(13Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_2295_KD_FOSL1_SRP139509	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.65973
PMAIP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.90098
GSE120612_7_v_3_etoposide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B2-5641-01A-01R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE196407_1_v_0_fluorouracil_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
lateral hypothalamic area, anterior region, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.866291
PE(20:0/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
transport	GO Biological Process Annotations 2015	1.0	null
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75807
PE(P-16:0/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:4(7Z,10Z,13Z,16Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
r9 part of the basolateral reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.04719
IKZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.8562
Macrophage_Lacrimal gland_Mouse	CellMarker Gene-Cell Type Associations	1.0	null
PC(24:1(15Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(9Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(16:0/15:0)	HMDB Metabolites of Enzymes	1.0	null
GSE111102,GSE111105_8_v_0_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(22:4(7Z,10Z,13Z,16Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14287_KD_TENT4A_SRP237261	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.19218
PE(20:2(11Z,14Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_9695_KO_GPNMB_SRP382180	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.18311
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
MINO	CCLE Cell Line Gene Expression Profiles	1.0	2.13215
PE(24:1(15Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:0/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PMC11743796-41420_2025_2295_MOESM5_ESM.xlsx-aged_LPS_BV-2_vs_human_upreg-human_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
PE(20:0/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
MFE280	CCLE Cell Line Gene CNV Profiles	1.0	1.61612
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44396
PE(16:1(9Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:3(8Z,11Z,14Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
membrane-bounded organelle	GO Cellular Component Annotations 2015	1.0	null
PE(18:3(9Z,12Z,15Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
H3K4me1_G1E_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
Perturb_14129_KD_AKR1B1_SRP400403	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-11.385
r9 part of the lateral reticular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.86673
PC(14:1(9Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
intermediate stratum of r7BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.19734
Perturb_11868_OE_Ezh2_SRP059688	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	20.0
PE(16:0/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-WFG8-0626-SM-3GILJ	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(20:3(8Z,11Z,14Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44396
Perturb_1245_OE_MYC/BCL2/BCL6_SRP376326	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.03449
PE(15:0/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
H3K27ac_bone marrow macrophage_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
PE(18:3(9Z,12Z,15Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(16:0/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(9Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
Human - PBMC - L2 - Conventional Dendritic Cell 2	HuBMAP Azimuth Cell Type Annotations	1.0	null
PC(14:1(9Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-WFG8-0001-SM-4LVN8	GTEx Tissue Sample Gene Expression Profiles	1.0	1.27149
OCIMY7	DepMap CRISPR Gene Dependency	1.0	2.31442
PC(24:1(15Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
orbital frontal cortex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.38214
Inositol phosphate metabolism	Reactome Pathways 2014	1.0	null
PC(22:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(9Z,12Z,15Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PE(14:1(9Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
abnormal alpha-beta T cell morphology	MGI Mouse Phenotype Associations 2023	1.0	null
GSE169571_3_v_4_dexamethasone_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC11063202-41420_2024_1940_MOESM2_ESM.xlsx-THP1-EP300_KOvsNontarget-gene_name_GLI2	Rummagene Transcription Factor Associations 2026	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(14:1(9Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-QMR6-1926-SM-32PL9	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Perturb_8610_KD_Camta1_SRP048702	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	2.11311
NHLH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.7794
PE(20:2(11Z,14Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_773_Mut_ACLY_SRP403241	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.0591
PE(24:0/16:0)	HMDB Metabolites of Enzymes	1.0	null
H3K4me1_mononuclear cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PC(20:0/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041138
Thoracic thymus_CT1_plasmacytoid dendritic cell	HuBMAP ASCT+B Annotations	1.0	null
Interferon regulatory factor 7 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.709
fruit	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.212936
PC(24:0/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE223008_6_v_3_calhm6_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(18:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
GSE157777_1_v_0_foxa3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(22:0/14:0)	HMDB Metabolites of Enzymes	1.0	null
PE(18:2(9Z,12Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(11Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-RM2N-0126-SM-48FDD	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(22:1(13Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14241
Inherited metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.112
PE(22:5(7Z,10Z,13Z,16Z,19Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(15:0/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_362_KD_RAC1_SRP387923	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	10.829
GTEX-UTHO-0011-R11A-SM-3GIJE	GTEx Tissue Sample Gene Expression Profiles	1.0	0.875413
PC(22:5(4Z,7Z,10Z,13Z,16Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:2(11Z,14Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
H3K27ac_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-N9-A4Q7-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KPL1	DepMap CRISPR Gene Dependency	1.0	2.09016
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.64081
GSE137144_4_v_0_nlrp3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Primary somatosensory area, trunk, layer 6b	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.53563
GTEX-N7MS-0011-R6a-SM-2HMJ4	GTEx Tissue Sample Gene Expression Profiles	1.0	0.857767
PC(18:3(9Z,12Z,15Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_8813_KD_YAP1/WWTR1_SRP284279	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.60094
membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045636
PC(14:1(9Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_8881_KD_CSL_SRP142324	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-5.3716
cytoplasmic membrane-bounded vesicle	GO Cellular Component Annotations 2015	1.0	null
PE(P-18:1(11Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(9Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_2576_KD_LINE1_ERP011233	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-7.10477
Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A3WY-01A-11R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-T5JW-1426-SM-4DM5Q	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.876291
PE(18:1(9Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
ventrolateral prefrontal cortex_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.23643
Cerebellar nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.909
PMC12410147-NIHMS2099518-supplement-5.xlsx-z-scores_E4DEG_DGATiLPS_vs_LPS-Z-scores_for_genes_differentially_expressed_when_comparing_DGATi_LPS_treatment_to_LPS_alone_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
PE(20:0/dm18:0)	HMDB Metabolites of Enzymes	1.0	null
GSE152050,GSE152052_1_v_0_arid1a_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
endoplasmic reticulum membrane	GO Cellular Component Annotations 2015	1.0	null
Arthritis	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.751
PC(20:3(5Z,8Z,11Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Prostate-myeloid cell	Tabula Sapiens Gene-Cell Associations	1.0	3.18871
Perturb_14083_KD_HSF1_SRP258163	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.43373
Phosphatidylethanolamine	MW Enzyme Metabolite Associations	1.0	null
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.054054
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0544
PE(P-18:1(11Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
PC(o-18:1(9Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(16:0/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
NCI-H2196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19767
SP in dorsomedial extrastriate cortex (V2)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.05362
PE(16:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(14:1(9Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-V1-A8MM-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Primary immunodeficiency disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.751
ELK1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EP300	ENCODE Transcription Factor Targets	1.0	null
PC(16:1(9Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
t69-brown-adipose_consensus	MoTrPAC Rat Endurance Exercise Training	1.0	13.0993
SUM225CWN	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.0812
PE(P-16:0/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:1(11Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(24:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
PE(14:0/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14391_KD_PAX8_SRP276625	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
Perturb_337_KD_MYC_SRP301562	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.46848
blood vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070982
SNU-1040	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PE(18:2(9Z,12Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
external granular (germinal) layer of lower rhombic lip	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.13416
Rectum adenocarcinoma_READ_TCGA-AF-2689-11A-01R-A32Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(14:1(9Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
PMC6293073-LSA-2018-00153_TableS1.xlsx-A_KD_Tr_1_3_DNAm-Unnamed_1_AR	Rummagene Transcription Factor Associations 2026	1.0	null
PE(16:1(9Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PMC8787225-Data_Sheet_1.xlsx-STable_2_DEG-Supplementary_Table_2_1150_up-_and_down-regulated_differential_expressed_genes_upon_GATA2_activation_GATA2	Rummagene Transcription Factor Associations 2026	1.0	null
PE(22:0/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-T2IS-2626-SM-32QPP	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.828647
increased monocyte cell number	IMPC Knockout Mouse Phenotypes	1.0	null
r7 part of the posteroventral cochlear nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.1258
GTEX-WYVS-2426-SM-3NMA9	GTEx Tissue Sample Gene Expression Profiles	1.0	1.23473
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.977039
bone inflammation disease	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	1.00628
Thymus	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.922181
PC(15:0/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_12361_KD_SF3B5_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.50353
endocytic vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.236683
Perturb_15699_KD_PARP1_SRP280274	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-7.82102
RNASEH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95822
PE(P-18:1(9Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
GSE119978,GSE180930_6_v_7_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-DU-A5TR-01A-11R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(20:2(11Z,14Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PMC7360734-41467_2020_17206_MOESM9_ESM.xlsx-OCI-AML3-Unnamed_0_RUNX2	Rummagene Transcription Factor Associations 2026	1.0	null
Perturb_3392_OE_Hic1_SRP332904	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	1.5445
H3K4me3_B cell_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
PC(18:3(9Z,12Z,15Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE111102,GSE111105_3_v_0_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
superficial stratum of Hb	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.30188
Kidney Chromophobe_KICH_TCGA-KO-8415-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary motor-sensory cortex (samples)_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.21438
rostral (anterior) extramural migratory stream	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.94627
RCOR1_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RELA	ENCODE Transcription Factor Targets	1.0	null
PC(dm18:1(9Z)/dm18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-WCDI-0002-SM-3P61U	GTEx Tissue Sample Gene Expression Profiles	1.0	1.64337
PC(P-18:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A43S-01A-21R-A23W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_5825_KO_Pax5_SRP185455	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	20.0
GTEX-OIZH-1626-SM-2HMKI	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
PE(22:5(7Z,10Z,13Z,16Z,19Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-5430-01A-02R-1686-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_13503_KD_CEBPG_SRP324237	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
PE(20:4(5Z,8Z,11Z,14Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:4(7Z,10Z,13Z,16Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(O-16:1(1Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_3749_KD_NORAD_SRP149071	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.38513
Lung adenocarcinoma_LUAD_TCGA-75-6205-01A-11R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-XBED-2626-SM-4E3J5	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
NTERA2CLD1	DepMap CRISPR Gene Dependency	1.0	2.69771
cerebellar cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.888188
abnormal hair growth	MPO Gene-Phenotype Associations	1.0	null
PC(o-20:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(24:0/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7407-01A-11R-2081-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZNF143	ENCODE Transcription Factor Targets	1.0	null
GTEX-PWOO-2226-SM-2S1P1	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(20:4(5Z,8Z,11Z,14Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
TOLEDO	CCLE Cell Line Gene Expression Profiles	1.0	1.72435
GTEX-RWS6-0001-SM-3NMAL	GTEx Tissue Sample Gene Expression Profiles	1.0	1.76074
GSE152441,GSE152442_1_v_3_folic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
TAL1-30185409-HPC-MOUSE-BONEMARROW-LEUKEMIA	ChEA Transcription Factor Targets 2022	1.0	null
GSE180200,GSE180201_3_v_9_qpctl_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:3(5Z,8Z,11Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
LYL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.29617
Perturb_2022_KO_Kmt2c_SRP283007	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	1.65145
GSE124375_13_v_0_chd2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(24:0/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:2(13Z,16Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
thus	GeneRIF Biological Term Annotations	1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE229468,GSE229471_2_v_3_znf587_human	RummaGEO Gene Perturbation Signatures	1.0	null
SET	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.8673
GSE152441,GSE152442_7_v_4_folic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Vermal regions	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01419
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.351
GSE231648_4_v_3_lsm14b_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-YA-A8S7-01A-11R-A37K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE235945_1_v_0_pikfyve_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE120612_6_v_5_etoposide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
RCOR1	ENCODE Transcription Factor Targets	1.0	null
PE(P-18:1(11Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_12373_KD_SKP2_SRP297799	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.46377
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.906664
PC(P-18:0/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-RNOR-0326-SM-2TF51	GTEx Tissue Sample Gene Expression Profiles	1.0	0.871513
A-Vietnam-1203_CIP048_RG4-2004(H5N1)HAAvirmut_7day-MOI-10^4_None_GSE37572	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.35569
Digestive gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PE(20:4(5Z,8Z,11Z,14Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
PML_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Perturb_17550_KD_HMG20A_SRP354496	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.92759
GSE223540_2_v_3_anxa2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
496100484_FWM_no dementia_no TBI_86_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.0389
PMC12339377-41587_2024_2403_MOESM3_ESM.xlsx-TableS6_LPS_screen_GEPs-Unnamed_12_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
OACP4C	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Perturb_7926_KD_ZCCHC8/ZFC3H1_SRP222099	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-5.16543
rostral ventral respiratory cell group	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.35934
Perturb_2355_KD_HOXA11_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
Perturb_756_KO_DNMT1_SRP389363	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.30354
PC(o-14:0/16:0)	HMDB Metabolites of Enzymes	1.0	null
AGFG2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.5213
PE(22:1(13Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(9Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE216043_11_v_1_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PC(18:3(9Z,12Z,15Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
HCC38	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.02324
PE(22:4(7Z,10Z,13Z,16Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PE(24:1(15Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(14:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
Plasmacytoid dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.41
PC(20:0/15:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2025	1.0	null
PC(24:1(15Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-XAJ8-1026-SM-47JY9	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Perturb_15555_KO_SLFN11_SRP327912	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.893
neck	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.094128
endocytic vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
GSE123943_4_v_5_sox1_human	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-QDVN-0526-SM-48TZ4	GTEx Tissue Sample Gene Expression Profiles	1.0	1.02136
PE(22:5(7Z,10Z,13Z,16Z,19Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
microglial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.818576
PC(P-16:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
PC(24:0/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Doyne honeycomb retinal dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.205
GTEX-WFON-0326-SM-3GIKX	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GSE157777_1_v_3_foxa3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
SNU1076	CCLE Cell Line Gene CNV Profiles	1.0	1.32902
Brain Lower Grade Glioma_LGG_TCGA-DU-8163-01A-11R-2256-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Primary motor area, Layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.33655
mantle zone of Str	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.15942
PE(18:1(11Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE178255_1_v_6_tlr4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
phosphatidylglycerol biosynthetic process	GO Biological Process Annotations 2015	1.0	null
GSE151612_4_v_7_pracinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
PC(22:1(13Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(9Z)/18:1(9Z)) 	HMDB Metabolites of Enzymes	1.0	null
PC(14:0/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(16:1(9Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
amygdaloid complex_8 yrs_M_12981	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.61296
GSE199899_4_v_2_diethylnitrosamine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PE(P-18:1(9Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.08611
Perturb_3693_KO_GPX8_SRP353993	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.60392
PC(22:0/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(6Z,9Z,12Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-16:0/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-NPJ8-0011-R3a-SM-2HMIW	GTEx Tissue Sample Gene Expression Profiles	1.0	1.10239
GSE223334_1_v_2_bcl11b_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GTEX-X4XY-0226-SM-4E3IZ	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A44Q-06A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_5652_Mut_SA1_SRP133292	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.50653
GTEX-NL4W-0011-R9a-SM-2I3G1	GTEx Tissue Sample Gene Expression Profiles	1.0	1.71454
PC(20:0/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13119
HS939T	CCLE Cell Line Gene Expression Profiles	-1.0	-1.94852
GSE218580_1_v_5_fentanyl_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
abnormal leukocyte cell number	MGI Mouse Phenotype Associations 2023	1.0	null
Perturb_6639_KD_ZBP1_SRP298473	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
network-forming collagen trimer	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.704
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052278
PE(22:4(7Z,10Z,13Z,16Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-HM-A3JJ-01A-21R-A21T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H2452	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1065
Kidney Chromophobe_KICH_TCGA-KN-8434-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K9me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PE(16:1(9Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE88819_5_v_12_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(20:3(8Z,11Z,14Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
GSE172295_4_v_2_sh3gl1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(18:1(9Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(24:1(15Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-OXRL-1626-SM-2YUMU	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PRRX2	JASPAR Predicted Transcription Factor Targets	1.0	null
PE(20:2(11Z,14Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
increased plasma cell number	MGI Mouse Phenotype Associations 2023	1.0	null
inferolateral temporal cortex (area TEv, area 20)_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.02381
PC(20:5(5Z,8Z,11Z,14Z,17Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-SUCS-0006-SM-4DM59	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
posterior tegmental nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.42835
GTEX-VUSG-0008-SM-4KL24	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.90321
PC(P-18:0/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-X4XX-0011-R5A-SM-46MWN	GTEx Tissue Sample Gene Expression Profiles	1.0	1.24707
GTEX-QV31-0126-SM-447BP	GTEx Tissue Sample Gene Expression Profiles	1.0	1.53336
GTEX-PLZ4-0926-SM-2S1OI	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GSE100316_5_v_4_mtor_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
NRF1	ENCODE Transcription Factor Targets	1.0	null
GSE227891_2_v_0_ethanol_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
valproic acid_mus musculus_gpl6885_gse35291	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
MDAMB453	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.40272
GSE193282_2_v_0_cd44_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(18:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(9Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
Early endosome	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
PMC7481169-277_2020_4194_MOESM7_ESM.xlsx-RUNX1_R139G-Unnamed_1_RUNX1	Rummagene Transcription Factor Associations 2026	1.0	null
PC(22:2(13Z,16Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-8266-01A-11R-2263-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-PX3G-0526-SM-2I3EM	GTEx Tissue Sample Gene Expression Profiles	1.0	0.927148
GTEX-QVUS-0011-R8A-SM-3GAD7	GTEx Tissue Sample Gene Expression Profiles	1.0	1.23863
Perturb_2335_KD_SON_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.91741
regulation of cytokine production	GO Biological Process Annotations 2025	1.0	null
PE(15:0/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_524_KD_RL6/BRF1_SRP382324	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	13.6388
TK-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.867986
PE(14:1(9Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
GSE147662_2_v_4_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
CBX3_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(18:0/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(8Z,11Z,14Z,17Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_5551_KO_FBXO11_SRP149805	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	12.4943
Rheumatoid arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.559
GTEX-X585-0011-R4B-SM-46MVH	GTEx Tissue Sample Gene Expression Profiles	1.0	1.69493
ZNF582	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9113
PMC8601278__F3	PFOCR Pathway Figure Associations 2024	1.0	null
SIRT1_KO_GDS3666_295_mouse_liver	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
BCL6-27268052-CHIP-SEQ-BCELLS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
PC(P-18:1(11Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:2(11Z,14Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(24:1(15Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
GSE119978,GSE180930_6_v_8_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Endoplasmic reticulum membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
PC(20:3(8Z,11Z,14Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(9Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE201309_4_v_7_matrine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Pituitary gland disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.029
PC(20:4(5Z,8Z,11Z,14Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(16:0/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.058915
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Perturb_8752_KD_ANLN_SRP083014	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.62728
ASCL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.9063
eye hemorrhage	MGI Mouse Phenotype Associations 2023	1.0	null
PE(22:2(13Z,16Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
facial nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.09841
GSE180200,GSE180201_3_v_11_qpctl_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_7423_KD_DKC1_SRP045222	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-10.8383
Perturb_15998_KD_LUCAT1_SRP221619	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.52601
PE(P-18:1(9Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-Q2AI-1526-SM-3GIJ3	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(15:0/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(16:1(9Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE114232_8_v_6_mavs_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
CAPN15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.25308
PE(18:1(9Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
cingulate gyrus, parietal part, left, inferior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.21155
primary auditory cortex (core)_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.0521
PE(P-18:0/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-XMD1-0011-R8A-SM-4AT48	GTEx Tissue Sample Gene Expression Profiles	1.0	1.55655
PC(14:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
GSE226114,GSE226116_1_v_0_doxorubicin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Rheumatoid arthritis	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.751
organic substance biosynthetic process	GO Biological Process Annotations 2015	1.0	null
PC(20:3(5Z,8Z,11Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:0/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_7707_KD_YTHDF3_SRP214946	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.31105
PC(24:1(15Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_443_KD_SBF2AS1_SRP116042	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	8.55211
hyperthyroidism	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.241546
GTEX-T6MO-1626-SM-32QOM	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(P-16:0/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-R55E-0011-R6A-SM-2TC5T	GTEx Tissue Sample Gene Expression Profiles	1.0	1.32467
SOX5	JASPAR Predicted Transcription Factor Targets	1.0	null
SNU601	CCLE Cell Line Gene CNV Profiles	-1.0	-1.78853
arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.403811
PMC3500769-srep00875-s3.xls-PAX2-Time_1_PAX2	Rummagene Transcription Factor Associations 2026	1.0	null
H3K4me3_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
superficial stratum of r7Co	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.12814
GTEX-NPJ8-0426-SM-2HMK6	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GSE111385_0_v_3_tgfbr2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(18:3(9Z,12Z,15Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:3(5Z,8Z,11Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(5Z,8Z,11Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A1A1-06A-11R-A18U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-7382-01A-11R-2132-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-RM2N-1826-SM-2TF5B	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
parvocellular part of the r9LRt	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-3.06636
Bone inflammation disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.541
GSE175571_3_v_2_acsl6_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE203158_0_v_14_aire_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(22:4(7Z,10Z,13Z,16Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(16:1(9Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(8Z,11Z,14Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-U8XE-0826-SM-4E3J1	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(18:2(9Z,12Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
primary motor cortex (area M1, area 4)_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.938918
PE(20:4(8Z,11Z,14Z,17Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(9Z,12Z,15Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
TBP_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE184902_4_v_0_adiponectin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PC(20:1(11Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
PMC9753996-jci-132-160767-s182.xlsx-IRF4_assciated-ABCA7_IRF4	Rummagene Transcription Factor Associations 2026	1.0	null
H3K27ac_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PC(18:3(9Z,12Z,15Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE190235_3_v_2_foxo3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_6878_KD_LINC00857_SRP371132	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-5.93348
H3K9ac_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Perturb_14085_KD_GAS41_SRP110132	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-7.73822
MHC class II protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.547
GTEX-REY6-0826-SM-2TF4S	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GSE115542_5_v_3_digoxin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE231720,GSE231724_2_v_1_setd2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GTEX-XUJ4-0626-SM-4BOOO	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GSE152637_1_v_0_imiquimod_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GSE221327_4_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE140092_0_v_1_socs3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
dorsolateral prefrontal cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.930039
posterior (caudal) superior temporal cortex (area 22c)_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.835159
mitochondrion	LOCATE Predicted Protein Localization Annotations	1.0	null
increased leukocyte cell number	IMPC Knockout Mouse Phenotypes	1.0	null
GSE169152_3_v_6_ibrutinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Perturb_15856_KD_BMI1_ERP013870	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-7.36987
PC(22:2(13Z,16Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
Lymphoma_burkitts(Raji)	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.84345
PC(20:2(11Z,14Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_398_KD_WTAP_SRP039397	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.43475
PC(14:0/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HW-A5KK-01A-11R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-UPIC-0002-SM-3NMDC	GTEx Tissue Sample Gene Expression Profiles	1.0	1.44062
endocytosis	GO Biological Process Annotations 2015	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2GT-06A-12R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CHD1	ENCODE Transcription Factor Targets	1.0	null
confirming	GeneRIF Biological Term Annotations	1.0	null
PE(24:1(15Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
GSE84148,GSE96938_0_v_1_nrros_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(22:0/14:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(8Z,11Z,14Z,17Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
lytic vacuole	LOCATE Predicted Protein Localization Annotations	1.0	null
PE(22:4(7Z,10Z,13Z,16Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
C75	DepMap CRISPR Gene Dependency	1.0	16.5532
Liver	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.26179
Perturb_2361_KD_YBX1_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	19.0
PE(18:3(6Z,9Z,12Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-WHPG-0004-SM-3NMDO	GTEx Tissue Sample Gene Expression Profiles	1.0	1.12885
BRD4-27068464-CHIP-SEQ-AML-CELLS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
fertilizedegg	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.24367
PC(P-18:0/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
H3K4me1_Panc1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SPIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.0919
PC(20:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-WFG8-2526-SM-3GILR	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(22:0/15:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_2431_KD_IRX6_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.63144
white matter of cerebellar vermis	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.38247
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A1BK-01B-11R-A13Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05226
ECEL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.878
ZMIZ1_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(20:3(5Z,8Z,11Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:0/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE203158_12_v_15_aire_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
amygdaloid complex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.44055
Perturb_12027_OE_ID2_SRP333901	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	5.93776
Perturb_17612_OE_MYC_SRP301619	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-7.34961
CNIH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.9102
GlobusPallidus	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.923838
bronchus	HPA Tissue Protein Expression Profiles	1.0	0.742911
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4998-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-H7-A76A-01A-51R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Nasopharynx	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A814-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE208254_4_v_5_irf8_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
nucleus	GO Cellular Component Annotations 2023	1.0	null
Lung adenocarcinoma_LUAD_TCGA-55-8514-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(P-18:1(11Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-K4-A83P-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HT144SKINFV1	DepMap CRISPR Gene Dependency	1.0	2.6359
hsa-miR-4283	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
PC(16:0/16:0)	HMDB Metabolites of Enzymes	1.0	null
Synthesis of PG	Reactome Pathways 2014	1.0	null
GSE175787_8_v_10_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE149943_1_v_0_cd8a_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.054949
Perturb_3661_KO_EZH2_SRP211748	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.4633
PC(P-18:1(9Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_7919_KO|OE_MALAT1|MALAT1_SRP386027	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.11928
PE(18:2(9Z,12Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(15:0/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(16:1(9Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
GSE76771_2_v_3_atf4_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
EGR1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Perturb_11890_OE_Ddah1_SRP027595	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-1.76883
Perturb_8885_KD_FOXM1_ERP109084	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	9.13142
hippocampus (hippocampal formation)_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-0.977016
mantle zone of r9BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.50119
PE(18:0/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B2-5635-01A-01R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_3241_OE_IK6_SRP136156	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-6.97872
NFIC	ENCODE Transcription Factor Targets	1.0	null
Perturb_17514_KO_Sh3gl1_SRP315284	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-5.17465
GTEX-N7MT-0011-R10A-SM-2I3E1	GTEx Tissue Sample Gene Expression Profiles	1.0	0.824068
Perturb_14286_OE_YAPS94A_SRP336792	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-16.3231
PE(18:2(9Z,12Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(11Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
phagocytic vesicle	GO Cellular Component Annotations 2015	1.0	null
SLC49A3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.20887
Perturb_2305_KD_CDC73_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.73265
KELLY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46333
Perturb_11086_KO_Atf6_SRP332137	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	4.2647
Phosphatidylcholine	MW Enzyme Metabolite Associations	1.0	null
PMC5105166-ncomms13331-s11.xlsx-Sheet1-Supplementary_Data_10_Overlap_of_upregulated_genes_in_MEF2D-rearranged_cases_with_public_ChIPseq_RNAseq_data_MEF2D	Rummagene Transcription Factor Associations 2026	1.0	null
PMC11743796-41420_2025_2295_MOESM5_ESM.xlsx-aged_LPS_BV-2_vs_human_downreg-mouse_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
EOL1	CCLE Cell Line Gene Expression Profiles	1.0	1.53188
motor nucleus of trigeminal nerve	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.90449
Perturb_1570_KO_Cd14_SRP056432	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	1.34541
EZH2_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Perturb_2352_KD_CTBP1_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
PC(15:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_10246_OE_RUNX1_SRP228597	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-11.5497
spleen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.257572
Golgi apparatus subcompartment	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
ventrolateral prefrontal cortex_8 yrs_M_12981	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	2.21323
GSE216043_7_v_8_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE110178_1_v_0_tranylcypromine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
MOLM13	CCLE Cell Line Gene Expression Profiles	1.0	1.38455
GTEX-TKQ2-0826-SM-33HB6	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(20:2(11Z,14Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(14:0/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Lingula (I), molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.1606
PE(18:3(9Z,12Z,15Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(11Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_3645_KO_EP300_ERP115567	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.77853
FOXO1::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.7843
SRC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.33034
Human - Liver - L2 - pDC	HuBMAP Azimuth Cell Type Annotations	1.0	null
musculoskeletal system disease	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	1.00628
PC(18:2(9Z,12Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
MBLAC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.02101
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
PE(22:0/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
oral mucosa	HPA Tissue Protein Expression Profiles	1.0	0.742911
SIN3A_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE154074_5_v_0_bleomycin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_9358_KO_CDKN2A_SRP158424	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.36904
TDRD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86232
Perturb_5665_KO_Utx/Jmjd3_SRP339500	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-9.24376
nucleus	GO Cellular Component Annotations 2025	1.0	null
ovary	HPA Tissue Protein Expression Profiles	-1.0	-1.14718
PC(16:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_10434_KO_PPFIA1_SRP127326	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.18093
ETV1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.0114
PC(18:2(9Z,12Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-S7-A7WN-01A-12R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
superficial stratum of r2Co	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.06633
GTEX-WI4N-1126-SM-3LK7Q	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.926815
GSE131425_2_v_3_arg2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(20:2(11Z,14Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
GSE158815_1_v_3_trib1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
T3M10	CCLE Cell Line Gene CNV Profiles	1.0	2.51586
monocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.099223
organophosphate biosynthetic process	GO Biological Process Annotations 2015	1.0	null
PE(22:2(13Z,16Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE205316,GSE205317_0_v_3_nrip1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(15:0/24:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
dorsolateral part of Lat	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.12629
outer SZ in posterior parahippocampal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.02441
GSE110178_1_v_6_tranylcypromine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PC(22:2(13Z,16Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_7656_KD_GTF2b_SRP120486	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.38039
External side of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.715
dorsolateral prefrontal cortex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.37227
Lung adenocarcinoma_LUAD_TCGA-50-5045-01A-01R-1628-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE178255_5_v_6_tlr4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-T6MN-0011-R2A-SM-32QOW	GTEx Tissue Sample Gene Expression Profiles	1.0	2.05153
nucleus of the inferior collicular brachium, rostral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.51448
GSE227415_1_v_0_ucp1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GATA1-19941827-MEL-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
PC(o-16:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(8Z,11Z,14Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
496100632_HIP_no dementia_TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.01279
PE(20:3(5Z,8Z,11Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
GSE120612_7_v_0_etoposide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PE(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE88819_0_v_9_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
roof plate of p2 (epithalamic roofplate)	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.3165
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-7393-01A-11R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(22:2(13Z,16Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
esophagus_5b	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.855537
Lung squamous cell carcinoma_LUSC_TCGA-22-4596-01A-01R-1201-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(18:3(9Z,12Z,15Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:3(5Z,8Z,11Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
Neurological pain disorder_CNS - Spinal Cord (MMHCC)_GSE18803	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	0.439921
PC(22:5(4Z,7Z,10Z,13Z,16Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PC(dm16:0/dm18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
mediodorsal nucleus of thalamus_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.889924
Perturb_3799_KD_ZNF281_SRP377192	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
Liver hepatocellular carcinoma_LIHC_TCGA-CC-5260-01A-01R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE188884,GSE189078_2_v_3_ebf1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(P-18:0/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:1(11Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_2336_KD_WBP11_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.42623
PC(18:2(9Z,12Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
PC(16:0/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_1574_KO_Cul3_SRP056432	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-1.60124
Perturb_11543_KD_DHX9_SRP175176	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	5.19884
Kidney renal papillary cell carcinoma_KIRP_TCGA-IA-A83T-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(dm18:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
DNA-dependent protein kinase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.761
OCI-AML3	COSMIC Cell Line Gene Mutation Profiles	1.0	null
H3K27me3_IMR90	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
PC(22:2(13Z,16Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
KARPAS620	CCLE Cell Line Gene Expression Profiles	1.0	1.34943
GSE144231_4_v_7_cxcr2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
frontal pole, right, medial aspect	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.50293
H3K4me2_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ERG-20887958-HPC-7-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
internal granular layer of CbHCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.06363
RBPJ-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
PC(18:0/15:0)	HMDB Metabolites of Enzymes	1.0	null
H3K27me3_Stomach Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
POLR2AphosphoS5_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-WFG8-0726-SM-3GILP	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GSE193999,GSE194000_3_v_2_atf3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(20:2(11Z,14Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:1(13Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
icSARS CoV_36Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.49119
REST	ENCODE Transcription Factor Targets	1.0	null
PC(P-18:1(9Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-XQ3S-0926-SM-4BOPI	GTEx Tissue Sample Gene Expression Profiles	1.0	0.834242
PC(20:1(11Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
spleen	HPA Tissue Protein Expression Profiles	-1.0	-1.14718
PC(14:1(9Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
GSE201217_3_v_6_usf2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
abnormal postnatal growth/weight/body size	MPO Gene-Phenotype Associations	1.0	null
PE(18:1(11Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Immune System	Reactome Pathways 2014	1.0	null
GSE163240_2_v_0_enzalutamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Perturb_14375_KD_IGF2BP1_SRP291710	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.64011
PE(20:2(11Z,14Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
POLR2AphosphoS2_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-QCQG-0226-SM-48U28	GTEx Tissue Sample Gene Expression Profiles	1.0	0.864335
MZ in dorsomedial extrastriate cortex (V2)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.928251
GTEX-RWSA-0726-SM-2XCBE	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GTEX-WFJO-0926-SM-4LVM2	GTEx Tissue Sample Gene Expression Profiles	1.0	1.64449
PE(18:3(6Z,9Z,12Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
Striatum dorsal region	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.05733
PE(20:3(8Z,11Z,14Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Lung adenocarcinoma_LUAD_TCGA-50-8457-01A-11R-2326-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_5861_KD_H3f3a_SRP133189	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-1.59831
PC(o-18:1(9Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
RMUGS	DepMap CRISPR Gene Dependency	1.0	2.83724
outer CP in posteroinferior (ventral) parietal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.92864
PE(P-16:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
PMC8020666-pnas.2015855118.sd11.xlsx-LPS_strongerResponse-Baboon_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
PC(18:3(9Z,12Z,15Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-S3XE-0426-SM-3K2AC	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Autoimmune disease of central nervous system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.108
Lupus Erythematosus	DisGeNET Gene-Disease Associations	1.0	null
r1 alar plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.07071
PC(22:2(13Z,16Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-POYW-0008-SM-48TE4	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Perturb_2326_KD_SF3B3_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-11.3263
GTEX-U4B1-1726-SM-3DB9F	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.908011
MAX	ENCODE Transcription Factor Targets	1.0	null
Perturb_12701_KO_Anxa5_SRP379319	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	1.84223
PC(24:0/14:0)	HMDB Metabolites of Enzymes	1.0	null
periventricular stratum of CbH	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.1272
Early phagosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.92
S100A8 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.639
Perturb_12571_KD_YBX1_SRP262465	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-7.16826
PE(22:4(7Z,10Z,13Z,16Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_13723_KD_TP53_SRP162695	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.58125
PC(18:1(9Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
HCC2302	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.83929
Perturb_10257_KD_TP53_SRP346937	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-10.4694
GSE92364_0_v_5_asparaginase_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Foxn1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.4968
Perturb_13392_KD_NSD2_SRP231443	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
PMC6744561-41467_2019_12125_MOESM7_ESM.xlsx-Normal_309_TCF7_rep1_sorted_pea-Gene_Name_TCF7	Rummagene Transcription Factor Associations 2026	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A62S-01A-11R-A30C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
oculomotor nuclear complex, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.8964
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GSE129287_0_v_1_cd200_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(14:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
POMC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.34934
PC(20:3(5Z,8Z,11Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-WFG7-0726-SM-3GIKO	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(24:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:1(13Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
JEKO1	CCLE Cell Line Gene Expression Profiles	1.0	2.35482
PE(18:4(6Z,9Z,12Z,15Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:2(9Z,12Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
GSE195582_0_v_1_pim1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(18:3(6Z,9Z,12Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-DZ-6131-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE143512,GSE143513_0_v_1_nr4a3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
IALM	CCLE Cell Line Gene CNV Profiles	1.0	1.77275
Immune System	Reactome Pathways 2024	1.0	null
PE(18:1(9Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
EA-18-FP00_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	-1.0	-0.259509
PE(20:2(11Z,14Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_2763_KD_CBX3_SRP077334	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.69528
GTEX-TMMY-0426-SM-33HBB	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.972697
interleukin-12 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.217511
PC(18:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Lateral ventricle	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PC(14:1(9Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:0/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
foxa2_20483781_p15_lung_lof_mouse_gpl1261_gse19204	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.13379
outer SZ in posteror frontal cortex (motor cortex)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.01556
membrane-bounded vesicle	GO Cellular Component Annotations 2015	1.0	null
superficial part of arcuate nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-4.10704
GSE100528_1_v_0_mettl3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-QEL4-0926-SM-3GAD1	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(18:3(6Z,9Z,12Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
EBF1	ENCODE Transcription Factor Targets	1.0	null
PE(18:1(11Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-PWO3-0011-R6A-SM-2I5F3	GTEx Tissue Sample Gene Expression Profiles	1.0	1.05307
PE(18:1(11Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(11Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:0/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
ZNF143_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(22:1(13Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(6Z,9Z,12Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(11Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_1038_OE_C15orf48_SRP289006	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.46313
PE(24:1(15Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_16992_KO_Egr2_SRP028331	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	3.95372
Perturb_7875_KD_H2A.Z.2_SRP259021	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-5.10039
Fcgamma receptor (FCGR) dependent phagocytosis	Reactome Pathways 2024	1.0	null
PE(22:1(13Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
RUNX1-22897851-JUKARTE6-1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Autoimmune disease of gastrointestinal tract	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.032
Female reproductive gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PC(P-18:0/16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(5Z,8Z,11Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:0/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(14:1(9Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-TKQ2-0004-SM-3NMAC	GTEx Tissue Sample Gene Expression Profiles	1.0	1.31357
PC(24:0/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(9Z,12Z,15Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE114232_8_v_11_mavs_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
HCC1419	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.11678
Role of phospholipids in phagocytosis	Reactome Pathways 2014	1.0	null
PC(20:3(5Z,8Z,11Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE65617_5_v_1_aire_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PE(24:1(15Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_1975_KO_Ogt_SRP250299	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	15.147
GSE240439_1_v_3_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
PPARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.2857
HCV_8week+IFN-a_None_GSE37715	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.74119
GTEX-XXEK-0926-SM-4BRWH	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.865239
MELJUSO	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6314
PC(P-18:0/24:0)	HMDB Metabolites of Enzymes	1.0	null
THEM4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.72522
SKNDZ	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35306
GSE84148,GSE96938_3_v_1_nrros_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
OCIMY5	CCLE Cell Line Gene CNV Profiles	1.0	1.60134
GSE211744_8_v_5_gdf15_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_13604_KD_YAP1/WWTR1_SRP221804	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	7.67169
PC(22:5(7Z,10Z,13Z,16Z,19Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PMC10515843-media-1.xlsx-Table_7_Diff_loop_genes_E_v_S-Supplementary_Table_7_Genes_that_involve_significant_differential_looping_in_pediatric_primary_B_cell_CTCF_peaks_compared_to_GM12878_CTCF_peaks_CTCF	Rummagene Transcription Factor Associations 2026	1.0	null
PC(22:2(13Z,16Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GSE137144_2_v_1_nlrp3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_1694_KD_Spi1_SRP280028	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	20.0
PE(22:5(4Z,7Z,10Z,13Z,16Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:0/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
tissues, cell types and enzyme sources	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.0758
PC(dm18:1(9Z)/dm16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(8Z,11Z,14Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Metabolism	Reactome Pathways 2014	1.0	null
PMC3526425-1471-2164-13-572-S3.xlsx-STAT6-STAT6_STAT6	Rummagene Transcription Factor Associations 2026	1.0	null
mammalian phenotype	MPO Gene-Phenotype Associations	1.0	null
subthalamic nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.33723
PE(18:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Aicardi-Goutieres syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.145
Nerve - Tibial	GTEx Tissue Gene Expression Profiles 2023	-1.0	-0.61656
PE(P-18:1(11Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-77-A5FZ-01A-31R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Bronchoalveolar system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PC(15:0/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(5Z,8Z,11Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(9Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
GR-ST	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GTEX-QMRM-0526-SM-2I5GA	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GSE210580_5_v_2_rag2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(16:1(9Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_6757_KO|KD_UPF3A/UPF3B|UPF2_SRP327782	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.60135
PC(P-16:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(6Z,9Z,12Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_1037_Mut_C15orf48_SRP289006	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.89839
GSE146074_9_v_8_ly6e_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
TCF3/E2A-22897851-JUKARTE6-1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Perturb_11962_KO_Tr1_SRP355815	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-9.05494
NCI-H1770	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PE(14:0/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
ZNF708	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2579
PE(20:3(5Z,8Z,11Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.833385
PE(22:2(13Z,16Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
precommissural nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.06178
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-6017-01A-11R-1686-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE168458_1_v_3_disulfiram_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GSE178532_2_v_0_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Dorsal peduncular area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.78596
PE(P-18:0/15:0)	HMDB Metabolites of Enzymes	1.0	null
EBF1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(22:1(13Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PC(o-16:1(9Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
TNKS_INHIBITION_GDS5029_280_human_SW480 KRAS-mutant colorectal cancer cell line - 4hours	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
PE(22:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_1765_KO_Myh9_SRP363034	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-20.0
Phospholipid metabolism	Reactome Pathways 2014	1.0	null
amygdaloid complex_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.86785
TCF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.7378
PE(P-16:0/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(4Z,7Z,10Z,13Z,16Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_13673_KO_Mir155_SRP057986	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-9.90866
PC(22:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
GATA4_INACTIVATION_GDS3663_519_mouse_Endothelial-derived cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
PC(22:0/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PMC7397849-supp_gad.338681.120_Supplemental_Table_S2.xlsx-S2B_in_vivo_shared-Suppl_Table_S2B_shared_genes_between_RCAS-YAP1-MAMLD1-dR3R1_RCAS-YAP1-FAM118B_RCAS-YAP1-TFE3_in_vivo_tumors_RCAS_mouse_TFE3	Rummagene Transcription Factor Associations 2026	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-S7-A7WW-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_8815_KD_INTS12_SRP073445	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	9.93073
GSE185519_3_v_5_gilteritinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
PC(18:1(9Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
skin_5f	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.833485
POU5F1-18692474-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
PE(20:1(11Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:2(9Z,12Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
GSE132408_1_v_3_tet2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Bed nuclei of the stria terminalis, anterior division, fusiform nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.01336
PE(18:1(9Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
PE(14:0/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
mediodorsal nucleus of thalamus_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.06223
lateral hypothalamic area, tuberal region, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.955833
VI, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.971733
Monocyte_Fetal kidney_Human	CellMarker Gene-Cell Type Associations	1.0	null
amygdaloid complex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.32273
Primary somatosensory area, unassigned, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.79694
NALM6	CCLE Cell Line Gene Expression Profiles	1.0	1.42605
PC(22:4(7Z,10Z,13Z,16Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_5548_KD_ASC_SRP310464	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.63251
GTEX-NPJ7-0011-R9a-SM-2TC5R	GTEx Tissue Sample Gene Expression Profiles	1.0	2.32667
PC(P-18:1(9Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(6Z,9Z,12Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_6521_KD_HES3_SRP162877	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	7.35106
ZNF135	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.1445
globus pallidus, internal segment, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.24325
PC(P-18:1(11Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
hydrolase activity	GO Molecular Function Annotations 2015	1.0	null
GSE87404,GSE87812_2_v_0_hoxa9_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE231799_3_v_4_nfkbie_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_3937_KO_DBC1_SRP371865	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.01948
PE(20:5(5Z,8Z,11Z,14Z,17Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
ATP5MK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.1848
Prostate adenocarcinoma_PRAD_TCGA-VP-A87C-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(P-16:0/24:0)	HMDB Metabolites of Enzymes	1.0	null
primary metabolic process	GO Biological Process Annotations 2015	1.0	null
PC(20:3(8Z,11Z,14Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
outer plexiform zone in extrastriate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.11487
PNGase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.068
Lung adenocarcinoma_LUAD_TCGA-69-7980-01A-11R-2187-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(18:2(9Z,12Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
MTA3	ENCODE Transcription Factor Targets	1.0	null
GTEX-N7MT-0011-R3a-SM-2I3GC	GTEx Tissue Sample Gene Expression Profiles	1.0	1.09232
GTEX-VJYA-0126-SM-4KL1P	GTEx Tissue Sample Gene Expression Profiles	1.0	1.64726
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.38886
TCF3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
USF1	ENCODE Transcription Factor Targets	1.0	null
Lung adenocarcinoma_LUAD_TCGA-73-4658-01A-01R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(20:2(11Z,14Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_7959_KD_ZFC3H1_SRP222099	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.9835
PEP-16:0/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
mantle zone of cerebellar vermis	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.20017
PC(18:0/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:0/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PE(16:0/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:0/24:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:4(7Z,10Z,13Z,16Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE154074_1_v_4_bleomycin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Cerebellar cortex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.09809
Pheochromocytoma and Paraganglioma_PCPG_TCGA-SR-A6N0-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_15471_KD_KLF5_SRP256723	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.32136
Perturb_6829_KD_CDK11_SRP156201	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	9.78085
r4 part of medial pontine nuclei	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.25196
PC(22:1(13Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_1039_OE_MOCCI_SRP289006	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.24658
Perturb_12355_KD_PRPF31_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.01431
GSE153124_4_v_0_dsg2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
laterodorsal subdivision of area 8	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.75522
PC(16:1(9Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(9Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-QVUS-0011-R6A-SM-3GACX	GTEx Tissue Sample Gene Expression Profiles	1.0	1.17094
PC(P-16:0/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(14:0/14:0)	HMDB Metabolites of Enzymes	1.0	null
Thymic medullary epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.606
16818636-TableS3	GeneSigDB Published Gene Signatures	1.0	null
Perturb_10431_KD_circFAT1_SRP261305	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
PE(24:1(15Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
POLR2A_liver_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(14:0/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE203158_1_v_15_aire_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
substantia nigra, pars reticulata, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.82536
FAM104B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.93448
PC(18:2(9Z,12Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(14:0/15:0)	HMDB Metabolites of Enzymes	1.0	null
PC(18:2(9Z,12Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(dm18:1(9Z)/dm18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:0/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
FAM156B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.02947
primary motor cortex (area M1, area 4)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.19741
PC(20:2(11Z,14Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
lateral part of the lateral habenular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.30576
PE(16:1(9Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PE(24:1(15Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058228
GTEX-P4QR-0726-SM-2I5GO	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(20:4(8Z,11Z,14Z,17Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Primary somatosensory area, lower limb, layer 4	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.13989
Perturb_10180_KO_Atrx_SRP282433	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	2.69606
GTEX-QVUS-2926-SM-3GIJB	GTEx Tissue Sample Gene Expression Profiles	1.0	1.00867
PE(16:1(9Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
phospholipases	HumanCyc Pathways	1.0	null
SU-DHL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13366
PMC10350077-media-7.xlsx-Microglia_P_LPS_All_Up_GO-Gene_Symbol_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-WXYG-2526-SM-3NB3F	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.935273
PC(o-16:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
frontal pole, right, inferior aspect	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.916999
Perturb_14630_KD_MSI1_SRP067129	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.54253
PMC7952454__F3	PFOCR Pathway Figure Associations 2023	1.0	null
PE(22:1(13Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PC(o-16:1(9Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
posterior orbital gyrus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.03754
GSE119498_2_v_4_setd5_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
mantle zone of r8BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.67957
PMC12500496-262_2025_4178_MOESM2_ESM.xlsx-THP1_enriched_for_CVGBM-gene_name_GLI2	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-UTHO-1826-SM-3GAFE	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.89918
NCIH661	CCLE Cell Line Gene Expression Profiles	-1.0	-1.58185
NCI-H716	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44244
Perturb_4407_KD_DDX3X_SRP299259	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
Perturb_5666_KO_Utx/Jmjd3_SRP339500	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-14.2833
GTEX-S341-1826-SM-3K2AB	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Perturb_626_KD_CCND3_SRP325057	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	18.1192
PC(18:1(11Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_6754_KD_UPF2_SRP327782	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.28082
Brain Lower Grade Glioma_LGG_TCGA-S9-A6U9-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(P-18:1(9Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(9Z,12Z,15Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.332
intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
PE(14:1(9Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
rituximab_homo sapiens_gpl570_gds3829	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
PC(18:3(9Z,12Z,15Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Systemic scleroderma	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.564
PC(16:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.283
PC(22:1(13Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
EBF1_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ERG-20887958-HPC-7-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
GSE167886_2_v_0_chd7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Perturb_7431_KO|KD_RBFOX2|RBFOX1_SRP068106	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.87504
PE(20:2(11Z,14Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PMC8567138-Table_2.xlsx-Sheet1-IGFBP5_AND_IGFBP7_NOT_IGFBP3_NR4A2	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-UJHI-0126-SM-4IHLP	GTEx Tissue Sample Gene Expression Profiles	1.0	1.86192
GTEX-XLM4-0011-R7A-SM-4AT5L	GTEx Tissue Sample Gene Expression Profiles	1.0	0.852112
PE(18:3(6Z,9Z,12Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(9Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
endoplasmic reticulum membrane	GO Cellular Component Annotations 2023	1.0	null
CUX1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-4254	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
GSE126463_6_v_2_pomalidomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PE(15:0/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
frontal operculum, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.04157
EP300_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
KDM2B-26808549-CHIP-SEQ-DND41-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GTEX-T5JC-0011-R9A-SM-32PLV	GTEx Tissue Sample Gene Expression Profiles	1.0	0.831142
PC(20:2(11Z,14Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(11Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:2(11Z,14Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_2880_KD_LY96_SRP285007	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.74703
ventrolateral prefrontal cortex_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-0.842861
PE(20:2(11Z,14Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:0/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(24:0/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-16:0/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
TCF12_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05226
PE(22:0/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Myeloid dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.898
NCI-H1304	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
Perturb_13706_KD_SMARCA2_SRP247495	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.88443
Perturb_519_KO_PAF1_ERP136917	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.48923
H3K9me3_CH12.LX_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
SPI1-22790984-ERYTHROLEUKEMIA-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PC(24:0/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
phospholipase D activity	GO Molecular Function Annotations 2023	1.0	null
Pharyngeal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.722
GTEX-WWYW-0011-R7A-SM-3NB3H	GTEx Tissue Sample Gene Expression Profiles	1.0	0.877231
dorsomedial tegmental nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.10353
PC(18:1(9Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
ES-WA7 Cells	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-1.2434
single-organism developmental process	GO Biological Process Annotations 2015	1.0	null
GTEX-U8XE-1826-SM-4E3HV	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.916779
PC(16:0/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(18:0/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE205163,GSE205164_2_v_4_znf808_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(15:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
H3K4me3_CD14-positive monocyte_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
GTEX-XMD1-0011-R1A-SM-4AT4C	GTEx Tissue Sample Gene Expression Profiles	1.0	0.929958
PC(18:1(9Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE196699_7_v_3_prdm16_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.053
primary somatosensory cortex (area S1, areas 3,1,2)_4 mos_M_12890	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	0.923315
anterior (rostral) cingulate (medial prefrontal) cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.05787
GTEX-T5JC-0011-R2A-SM-32PLZ	GTEx Tissue Sample Gene Expression Profiles	1.0	1.36609
PE(22:5(4Z,7Z,10Z,13Z,16Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:1(11Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
central gray of the pons, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	2.79405
amygdaloid complex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.22289
Primary somatosensory area, lower limb, layer 5	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.03475
PE(16:1(9Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE175787_5_v_9_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
liminal alar domain of m2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.18381
japanese	GeneRIF Biological Term Annotations	1.0	null
PC(16:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
GSE144120_3_v_1_plcg2_human	RummaGEO Gene Perturbation Signatures	1.0	null
BICR16	CCLE Cell Line Gene CNV Profiles	1.0	2.18078
PC(P-16:0/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_16310_KO_BUD31_SRP335732	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.59257
PE(22:0/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A6TB-01A-12R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(P-18:1(11Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
primary motor cortex (area M1, area 4)_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.15306
GSE138019_4_v_5_nudt12_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(24:1(15Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
POLR2A_small intestine_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-NFK9-0626-SM-2HMIV	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.921839
PE(22:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Uterine cervix	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PC(22:4(7Z,10Z,13Z,16Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-WFG8-2426-SM-3GILL	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GSE169713,GSE169715_1_v_2_tert_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.968949
GTEX-WEY5-1326-SM-3GILS	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(18:2(9Z,12Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
spleen	GTEx Tissue Gene Expression Profiles	1.0	1.57072
GSE152379_0_v_4_bach2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
POLR2A_GM12891_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(18:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-RVPV-0011-R5A-SM-2TF69	GTEx Tissue Sample Gene Expression Profiles	1.0	0.929734
JIYOYE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40142
PC(18:1(11Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
r8 portion of the hypoglossal motor nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.46077
GTEX-OXRP-2326-SM-2S1NL	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(22:5(4Z,7Z,10Z,13Z,16Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(9Z,12Z,15Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14119_KD_RPS6KB2_SRP187713	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.83014
organophosphate metabolic process	GO Biological Process Annotations 2015	1.0	null
GTEX-SJXC-1226-SM-4DM78	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(18:1(9Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
MAZ_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Dhori Virus_12Hour_20090954_GSE17400	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.29744
496100562_FWM_no dementia_TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.04791
PE(22:5(7Z,10Z,13Z,16Z,19Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
H3K4me3_GM12878_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
GTEX-R55G-2526-SM-2TC6D	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(P-18:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PMC9894241-pnas.2211429119.sd05.xlsx-G6_REST-Dataset_S6_Differentially_expressed_genes_in_G1-G8_REST	Rummagene Transcription Factor Associations 2026	1.0	null
PC(P-18:1(11Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
ZNF426	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.45931
PC(20:3(8Z,11Z,14Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
POLR2A_bone marrow_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(22:1(13Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
GSE178255_1_v_7_tlr4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21904
PC(18:0/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
dorsolateral prefrontal cortex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.12724
SIM2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.40425
GSE68925_1_v_0_fasudil_human	RummaGEO Drug Perturbation Signatures	-1.0	null
H3K4me3_G1E_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
PE(15:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(9Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PMC5415769__F2	PFOCR Pathway Figure Associations 2023	1.0	null
FLI1	ChEA Transcription Factor Targets	1.0	null
SCARB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.89102
amygdaloid complex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	0.845573
PC(22:2(13Z,16Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(9Z,12Z,15Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
vagina	HPA Tissue Protein Expression Profiles	1.0	0.742911
PE(24:0/15:0)	HMDB Metabolites of Enzymes	1.0	null
PC(14:0/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
TFAP2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	143.411
PC(20:3(5Z,8Z,11Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(14:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Amylin receptor complex 1	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.899
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4798-01A-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
C-4-I	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GTEX-TMMY-0226-SM-33HBA	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
MEF2A	ENCODE Transcription Factor Targets	1.0	null
GSE211983_0_v_2_nicotine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GTEX-WEY5-0226-SM-3GIKN	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GSE157296,GSE157298_4_v_2_kbtbd4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
STAT3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE201309_4_v_3_matrine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
intermediate stratum of m1AL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.07451
Declive (VI), molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.62679
SPI1_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(P-18:0/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
SKBR3	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.72854
PE(22:4(7Z,10Z,13Z,16Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_9799_OE_XPO4_SRP328169	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-7.22341
layer 1 of PCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.62807
PE(18:0/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
STAT3	ENCODE Transcription Factor Targets	1.0	null
Perturb_5735_KD_NAP1L3_SRP121475	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	5.04714
PC(18:0/14:0)	HMDB Metabolites of Enzymes	1.0	null
PC(o-18:1(9Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-QVJO-0011-R4A-SM-2S1QL	GTEx Tissue Sample Gene Expression Profiles	1.0	1.14039
MEF2C_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(18:2(9Z,12Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
increased circulating interferon-gamma level	MGI Mouse Phenotype Associations 2023	1.0	null
GSE205070_2_v_5_mertk_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
TBP	ENCODE Transcription Factor Targets	1.0	null
CSTB_KO_GSE47516_678_mouse_mouse cerebellum at P30	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
polyol metabolic process	GO Biological Process Annotations 2015	1.0	null
lateral hypothalamic area, anterior region, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.829086
PC(18:3(6Z,9Z,12Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(5Z,8Z,11Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-N7MT-0011-R6a-SM-2I3G3	GTEx Tissue Sample Gene Expression Profiles	1.0	0.925333
Perturb_7764_KD_RRP40_SRP062389	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-7.1885
GSE89767_6_v_5_cebpa_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(24:0/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:0/16:0)	HMDB Metabolites of Enzymes	1.0	null
single-stranded DNA 5'-3' DNA exonuclease activity	GO Molecular Function Annotations 2025	1.0	null
Six3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.5428
PC(20:4(8Z,11Z,14Z,17Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-7377-01A-11R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_8753_KD_ANLN_SRP083014	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	9.59162
COLO 206F	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23642
SNU-638	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75912
PE(20:1(11Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
GSE213442_1_v_0_kpna2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GTEX-PSDG-0008-SM-48TE5	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.87938
5'-3' DNA exonuclease activity	GO Molecular Function Annotations 2025	1.0	null
PE(22:4(7Z,10Z,13Z,16Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(15:0/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_12309_KD_METTL14_SRP074429	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.30303
PC(P-16:0/15:0)	HMDB Metabolites of Enzymes	1.0	null
membrane region	GO Cellular Component Annotations 2015	1.0	null
H3K27ac_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
GTEX-XLM4-0011-R2B-SM-4AT5Z	GTEx Tissue Sample Gene Expression Profiles	1.0	1.39538
PC(16:1(9Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:2(9Z,12Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
mononuclear cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.083097
PE(16:1(9Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-5106-01A-01R-1420-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LMO2	ChEA Transcription Factor Targets	1.0	null
PC(P-18:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_15692_KD_SLFN5_SRP051401	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.76316
Arcuate hypothalamic nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.22223
dentate gyrus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.27417
H3K27ac_liver_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
GTEX-WH7G-1626-SM-4LVMY	GTEx Tissue Sample Gene Expression Profiles	1.0	1.47003
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28215
PE(24:1(15Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_8450_KD_NPM1_SRP230777	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.71344
H3K4me3_Mobilized CD34 Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
PC(14:1(9Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(14:1(9Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
EGR1	ENCODE Transcription Factor Targets	1.0	null
Perturb_3721_KD_DNMT1_SRP049370	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.04493
KARPAS-45	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2979-03B-01T-0760-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE136233,GSE136234_0_v_1_zpbp2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-S4P3-1626-SM-3K2AZ	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.699
GSE121246_1_v_0_stat5b_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(18:2(9Z,12Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_3970_Mut_BRAF_SRP258593	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.22655
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(14:1(9Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
496100471_HIP_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.03811
496100620_FWM_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.54869
PE(20:3(5Z,8Z,11Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
H3K9me3_NT2-D1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PE(18:2(9Z,12Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(8Z,11Z,14Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(9Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Primary somatosensory area, upper limb, layer 5	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.09527
PE(22:5(7Z,10Z,13Z,16Z,19Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(16:1(9Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
VMRCRCW	CCLE Cell Line Gene CNV Profiles	-1.0	-2.05775
PE(20:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
prostate	HPA Tissue Protein Expression Profiles	1.0	0.742911
Autoimmune disease of musculoskeletal system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.705
GTEX-R55E-0011-R7A-SM-2TC5Z	GTEx Tissue Sample Gene Expression Profiles	1.0	1.41755
PE(18:1(11Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE127970_1_v_3_ebf1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A51H-06A-12R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
synapse part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.064435
GSE154074_2_v_0_bleomycin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
REL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8824
PE(22:2(13Z,16Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_689_KO_CD5L_ERP111466	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
PMC10550934-41467_2023_41927_MOESM4_ESM.xlsx-degenes_beatAML_CEBPA-WT-gene_symbol_CEBPA	Rummagene Transcription Factor Associations 2026	1.0	null
ETS1_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Perturb_5814_KO_U2af1_SRP266807	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-3.94996
Kidney Chromophobe_KICH_TCGA-KO-8403-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(20:0/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PMC11383936-41598_2024_71738_MOESM6_ESM.xlsx-DEPs_LMS_vs_LMS_-_vs_HC-Unnamed_4_TP63	Rummagene Transcription Factor Associations 2026	1.0	null
STK25	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.79896
PE(16:1(9Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-NPJ7-0011-R11A-SM-2I3E8	GTEx Tissue Sample Gene Expression Profiles	1.0	1.06471
PE(22:5(7Z,10Z,13Z,16Z,19Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:2(13Z,16Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
increased plasmacytoid dendritic cell number	MGI Mouse Phenotype Associations 2023	1.0	null
GSE152441,GSE152442_7_v_5_folic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
KMS-28PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles	1.0	null
PE(22:2(13Z,16Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(9Z,12Z,15Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
periventricular stratum of r3Ve	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.10985
PE(18:4(6Z,9Z,12Z,15Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
scleroderma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.758601
PC(16:1(9Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(9Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-TKQ1-1426-SM-4GICK	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(18:2(9Z,12Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
layer III of area 35c	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.42584
NCIH1437	CCLE Cell Line Gene CNV Profiles	1.0	1.56926
Pheochromocytoma and Paraganglioma_PCPG_TCGA-SP-A6QI-01A-12R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
HS343T	CCLE Cell Line Gene Expression Profiles	-1.0	-2.91614
PE(16:0/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(5Z,8Z,11Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(16:1(9Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-QDVN-0326-SM-2I3FS	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.890367
PC(P-18:1(9Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_13648_OE_miR24_SRP067253	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	8.59669
Arthritis, Rheumatoid	CTD Gene-Disease Associations	1.0	2.88009
PC(18:1(9Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_9111_OE_FOXO1A3_SRP188991	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.55692
PE(14:1(9Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(9Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(9Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-16:0/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
golgi apparatus part	GO Cellular Component Annotations 2015	1.0	null
TFAP2C	JASPAR Predicted Transcription Factor Targets	1.0	null
Embryonic structure	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
IgD immunoglobulin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.617
H3K27ac_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
GTEX-WWYW-1326-SM-3NB2S	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GSE136238_1_v_0_ebf1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-WN-A9G9-01A-12R-A37K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(20:3(8Z,11Z,14Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
Declive (VI)	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.62179
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.968949
GSE211744_8_v_0_gdf15_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(16:0/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(5Z,8Z,11Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
increased spleen weight	MGI Mouse Phenotype Associations 2023	1.0	null
Perturb_2395_KD_TRIM28_SRP308699	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-5.77243
GTEX-XUJ4-0526-SM-4BOON	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.831453
PE(15:0/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE185635_0_v_1_ncor1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE195513_2_v_1_cpeb1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GTEX-U8T8-1426-SM-3DB9H	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GSE157960_2_v_1_progesterone_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
medial superior olive	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.34983
Perturb_39_KD_ATRX_SRP308220	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	15.7555
increased macrophage cell number	MGI Mouse Phenotype Associations 2023	1.0	null
PE(22:2(13Z,16Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(5Z,8Z,11Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE169571_3_v_2_dexamethasone_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
posterior (caudal) superior temporal cortex (area 22c)_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	0.876827
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15296
PE(24:1(15Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:0/24:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:2(13Z,16Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
USF2_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
spleen_3b	HPA Tissue Sample Gene Expression Profiles	1.0	1.44576
Perturb_597_OE_HOTAIR_SRP342161	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	5.38435
H3K4me3_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
ZNF317	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6225
18974375-TableS5a	GeneSigDB Published Gene Signatures	1.0	null
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.833385
Perturb_13444_KD_Taf4_SRP119047	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	13.8108
GSE118794_5_v_4_zmynd8_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE110178_1_v_7_tranylcypromine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GSE144231_2_v_7_cxcr2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
intermediate stratum of Str	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.2744
Perturb_11692_KD|OE_SF3A3|MYC_SRP253943	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
PE(20:1(11Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(5Z,8Z,11Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
IKZF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.663
vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067407
t69-brown-adipose_male_8w	MoTrPAC Rat Endurance Exercise Training	1.0	7.55558
Perturb_2334_KD_SON_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.79682
PE(16:0/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
POU2F2_GM12891_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(20:4(8Z,11Z,14Z,17Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
OlfactoryBulb	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.883522
PE(18:1(11Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
ZKSCAN3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.9714
sc1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.68
CCR4-NOT core complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.824
Perturb_4193_KO_Mbnl1_SRP057123	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-3.06889
PE(22:5(4Z,7Z,10Z,13Z,16Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(8Z,11Z,14Z,17Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(24:0/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
intrinsic component of membrane	GO Cellular Component Annotations 2015	1.0	null
Perturb_7202_KD_DHX9_SRP080966	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-8.5793
TCF12_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:4(7Z,10Z,13Z,16Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(14:1(9Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
GSE137818_3_v_6_brca2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
NCI-H1694	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
posteroventral (inferior) parietal cortex_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.863651
PE(18:4(6Z,9Z,12Z,15Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
AGXT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.47511
Bladder Urothelial Carcinoma_BLCA_TCGA-S5-A6DX-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC6928094-395_2019_765_MOESM7_ESM.xls-DEGs_AR7_vs_Pre-patterned-List_of_differentially_expressed_genes_in_AR7_vs_Pre-patterned_cells_THRA	Rummagene Transcription Factor Associations 2026	1.0	null
PC(14:1(9Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PMC12055596-41375_2025_2570_MOESM4_ESM.xlsx-PDX1-Unnamed_14_PDX1	Rummagene Transcription Factor Associations 2026	1.0	null
JL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33587
Perturb_8987_KD_HNRNPM_SRP311345	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.57378
PC(15:0/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:0/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:1(11Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_2358_KD_RPL7_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
PE(20:4(5Z,8Z,11Z,14Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-YL-A8HO-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_1620_KO_Cul3_SRP056432	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-3.55554
SKM1	CCLE Cell Line Gene Expression Profiles	1.0	1.46717
Perturb_7802_KD_RTF1_SRP064356	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.3541
GTEX-XPT6-0226-SM-4B65L	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
RAJI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.892582
PE(P-18:1(11Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_12513_KO_ERO1_ERP137480	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.59524
Perturb_12621_KD_YAP_SRP252675	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.01339
CLPP_KO_GDS4791_108_mouse_brain	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
FOXM1-26100407-CHIP-SEQ-HEK293-FLP-IN-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE231648_4_v_5_lsm14b_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GTEX-N7MS-0011-R8a-SM-2YUMK	GTEx Tissue Sample Gene Expression Profiles	1.0	1.8286
PE(14:1(9Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:0/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_9136_KD_EZH2_SRP090707	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.42866
PE(18:1(9Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-63-6202-01A-11R-1820-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(22:0/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-R45C-0926-SM-3GAD4	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Lingula (I)	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.15126
TUHR4TKB	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45807
GSE136238_1_v_2_ebf1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(20:5(5Z,8Z,11Z,14Z,17Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
enlarged lymph nodes	MGI Mouse Phenotype Associations 2023	1.0	null
PE(18:1(11Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
H3K4me1_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-S9-A6WQ-01A-12R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE126402_2_v_7_tal1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC6694122-41467_2019_11591_MOESM7_ESM.xlsx-f_CEBPA_DEGs-Gene_CEBPA	Rummagene Transcription Factor Associations 2026	1.0	null
MM.1S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.55666
CTCF_spleen_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OCIAML5	CCLE Cell Line Gene Expression Profiles	1.0	1.99615
GTEX-VUSG-0726-SM-3GIK1	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(20:3(8Z,11Z,14Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(14:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
RERFLCAD1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.78608
Lung squamous cell carcinoma_LUSC_TCGA-46-3766-01A-01R-0980-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(24:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14241
Perturb_10443_KO_miR29a_SRP075398	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.91701
PC(20:5(5Z,8Z,11Z,14Z,17Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(11Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-X5EB-0004-SM-46MWA	GTEx Tissue Sample Gene Expression Profiles	1.0	1.03058
EP300_GM12878_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
phospholipase activity	GO Molecular Function Annotations 2025	1.0	null
GSE247775_1_v_0_tmprss2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Perturb_8751_KD_BRCA2_SRP125262	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-7.84568
NOMO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35034
RUNX3	ENCODE Transcription Factor Targets	1.0	null
PE(20:1(11Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
SPI1-23547873-NB4-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
PC(16:1(9Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(24:1(15Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
periventricular stratum of r8BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.54517
PC(18:4(6Z,9Z,12Z,15Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PMC11067031-pnas.2317690121.sd06.xlsx-gene_list_14_txt-Differentially_expressed_genes_between_PML_RARA_GFP_vs_C88A_PML_RARA_GFP_human_hematopoietic_cells_at_day_7_by_single_cell_RNA-seq_RARA	Rummagene Transcription Factor Associations 2026	1.0	null
Perturb_775_KO_ACLY_SRP403241	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.99987
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
NRF1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(24:0/14:0)	HMDB Metabolites of Enzymes	1.0	null
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.75275
GSE147662_3_v_1_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_6855_KD_YTHDF1_SRP287222	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	5.73348
cerebellar cortex_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.24887
PC(o-16:1(9Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-16:0/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(6Z,9Z,12Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
r9 part of nucleus of Roller	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.49155
TRIM28	ENCODE Transcription Factor Targets	1.0	null
PC(20:3(8Z,11Z,14Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:0/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
STAT5A_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.953818
ZNF143_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ACSS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99309
r8 part of nucleus of Roller	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.22374
PMC10170086-41598_2023_34519_MOESM6_ESM.xlsx-Sheet3-The_overlapping_genes_between_significantly_co-expressed_genes_and_significantly_differentially_expressed_genes_of_BARX2_in_LIHC_BARX2	Rummagene Transcription Factor Associations 2026	1.0	null
PE(P-16:0/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14251_KO_RBAP48_SRP390492	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.67379
KMH-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PC(24:0/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PMC12634441-41375_2025_2771_MOESM7_ESM.xlsx-RNAseq-Table_S2_Bulk_RNA-seq_GATA2_vs_control_Only_p-adj_0_05_GATA2	Rummagene Transcription Factor Associations 2026	1.0	null
PC(15:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
mammillary body, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.2175
subbrachial nucleus, caudal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.82672
PC(15:0/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
NACC1-18358816-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
PMC10290283-biol-2022-0622-sm3.pdf-92-ZNF625_ZNF625	Rummagene Transcription Factor Associations 2026	1.0	null
stratum pyramidale of rostral CA2	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.47661
GTEX-WVLH-0011-R8A-SM-3MJFC	GTEx Tissue Sample Gene Expression Profiles	1.0	0.955731
PE(22:5(7Z,10Z,13Z,16Z,19Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_8770_KD_CPPED1_SRP259315	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.79596
PE(24:1(15Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(14:1(9Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-R55C-0326-SM-3GAF1	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.85643
GTEX-O5YW-0326-SM-2I5EI	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Perturb_13508_OE_Cd274_SRP234708	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-2.99322
PC(18:2(9Z,12Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(11Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
GSE101537_1_v_3_neurog3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
KDM5A	ENCODE Transcription Factor Targets	1.0	null
PE(20:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(8Z,11Z,14Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE141726,GSE141733_1_v_0_angiotensin ii_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PE(P-18:1(9Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_6765_KD_PAF1_SRP103746	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	15.4766
PE(18:3(9Z,12Z,15Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_6103_OE_WSTF_SRP400122	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.49336
posteroventral (inferior) parietal cortex_8 yrs_M_12981	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.46034
PE(14:0/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PE(16:0/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:2(9Z,12Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
icSARA deltaORF6_0Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.70948
putamen	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.31677
Glycerophospholipid metabolism	KEGG Pathways 2026	1.0	null
Perturb_13902_KO_AS3MT_SRP332674	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.74337
RPS20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.51368
Brain Lower Grade Glioma_LGG_TCGA-VM-A8CF-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE120612_7_v_2_etoposide_human	RummaGEO Drug Perturbation Signatures	1.0	null
phosphoric diester hydrolase activity	GO Molecular Function Annotations 2025	1.0	null
GTEX-X585-0011-R5A-SM-46MVI	GTEx Tissue Sample Gene Expression Profiles	1.0	1.54439
PC(P-18:1(11Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PC(15:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
CHD2_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
phosphate-containing compound metabolic process	GO Biological Process Annotations 2015	1.0	null
GTEX-WRHU-0626-SM-3MJFI	GTEx Tissue Sample Gene Expression Profiles	1.0	1.13081
PE(24:1(15Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE223008_5_v_3_calhm6_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
emboliform nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.15157
phospholipase activity	GO Molecular Function Annotations 2015	1.0	null
PE(24:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
GSE210580_3_v_12_rag2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE104508_0_v_3_dnmt3a_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
ARFGAP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.9055
GTEX-U3ZH-1926-SM-4DXTR	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Phagocytic vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
abnormal immunoglobulin level	MGI Mouse Phenotype Associations 2023	1.0	null
GTEX-P44H-0726-SM-48TBT	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
TBL1XR1	ENCODE Transcription Factor Targets	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-B1-A654-01A-11R-A31O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(15:0/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
15474998-tableS1c	GeneSigDB Published Gene Signatures	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A114-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MYOG_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27ac_MEL cell line_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_lung_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
C80	DepMap CRISPR Gene Dependency	1.0	9.04697
primary motor-sensory cortex (samples)_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-0.923688
PE(22:2(13Z,16Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GSE102505_1_v_3_tunicamycin_human	RummaGEO Drug Perturbation Signatures	1.0	null
PE(22:1(13Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE210580_5_v_6_rag2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(o-16:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
PE(24:1(15Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:1(13Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PC(15:0/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
macrophage	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	2.09859
PC(16:0/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:3(5Z,8Z,11Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(11Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
MXI1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ChIP_POU5F1_18347094	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Vagina	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PC(16:1(9Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
TTLL6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86828
GSE234340_10_v_7_muc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PMC8127234-12885_2021_8319_MOESM2_ESM.docx-0-CREB3L1_CREB3L1	Rummagene Transcription Factor Associations 2026	1.0	null
inferolateral temporal cortex (area TEv, area 20)_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.11249
Secretory granule lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.992
salivary gland	HPA Tissue Protein Expression Profiles	1.0	0.742911
graves' disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.354499
Perturb_3798_KD_ZNF281_SRP377192	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
Paraurethral gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.403
VI, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.13984
Prostate adenocarcinoma_PRAD_TCGA-KK-A7B2-01A-12R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Breast	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Perturb_12357_KD_RBM15_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.22522
Perturb_14615_KO_MTAP_SRP186070	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
Perturb_7957_KD_ZCCHC8_SRP222099	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.80041
trans-Golgi network	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
PC(24:0/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE149124,GSE149128_2_v_1_cdk7_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Crus 2, molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.0269
PC(22:1(13Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
MAX_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Primary somatosensory area, upper limb, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.93114
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.92789
cSARS Bat SRBD_72Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.47728
GSE166004_3_v_4_pld1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE231799_3_v_1_nfkbie_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Learning Disorders	CTD Gene-Disease Associations	1.0	1.53308
PE(20:5(5Z,8Z,11Z,14Z,17Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:4(7Z,10Z,13Z,16Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GSE158834_12_v_8_palmitic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Nuclear outer membrane-endoplasmic reticulum membrane network	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Scleroderma, Systemic	HuGE Navigator Gene-Phenotype Associations	1.0	null
ITPR2	Pathway Commons Protein-Protein Interactions	1.0	null
Perturb_2128_KD_DDX41_SRP309134	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	13.4396
PC(18:0/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(4Z,7Z,10Z,13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
TCF3	ENCODE Transcription Factor Targets	1.0	null
small intestine	GTEx Tissue Gene Expression Profiles	1.0	0.994667
Cerebrospinal fluid t-tau levels in normal cognition	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.81549
PMC7064337-elife-51373-supp1.xlsx-EZH2_targets_shPHF19-List_of_2084_genes_marked_by_EZH2_ChIPseq_after_PHF19_KD_shPHF19_AR	Rummagene Transcription Factor Associations 2026	1.0	null
PE(20:3(8Z,11Z,14Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.094
FIZZ2_KO_GDS4902_408_mouse_Lung	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
SMAD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.3614
PMC7359798__F3	PFOCR Pathway Figure Associations 2023	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
amygdaloid complex_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.15435
H3K27me3_G1E-ER4_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE229468,GSE229471_2_v_1_znf587_human	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-R55E-0011-R4A-SM-2TC5H	GTEx Tissue Sample Gene Expression Profiles	1.0	1.31513
OCILY3	CCLE Cell Line Gene Expression Profiles	1.0	1.38194
PC(P-18:1(11Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:2(11Z,14Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
SPI1_GM12891_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Inositol phosphate metabolism	Reactome Pathways 2024	1.0	null
GSE129244_3_v_5_lmo2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
medial amygdala, anterodorsal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.25323
Perturb_16968_KD_NRF2_SRP218850	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-6.71606
Perturb_478_KD_PPARGC1A_SRP278736	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.72053
IRF8	ChEA Transcription Factor Targets	1.0	null
CTCF_GM12891_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9me3_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PC(16:0/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE62292,GSE62295_2_v_0_col4a3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-S7SE-0005-SM-2XCEA	GTEx Tissue Sample Gene Expression Profiles	1.0	1.31471
BMI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.51158
PC(18:3(6Z,9Z,12Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
H3C1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.69885
probucol_mus musculus_gpl9526_gds3619	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Gemini of coiled bodies	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.959
amygdaloid complex_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.24306
GTEX-RUSQ-0926-SM-47JWU	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
mediodorsal nucleus of thalamus_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.904263
Agranular insular area, dorsal part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.40057
GTEX-QDT8-0011-R2A-SM-32PKQ	GTEx Tissue Sample Gene Expression Profiles	1.0	1.04162
anterior (rostral) cingulate (medial prefrontal) cortex_8 yrs_M_12981	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.70155
Pancreatic adenocarcinoma_PAAD_TCGA-Q3-A5QY-01A-12R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_2427_KD_CTBP1_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.34453
Sarcoma_SARC_TCGA-QQ-A8VG-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
laterodorsal part of putamen	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.44574
amygdaloid complex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.2505
orbital frontal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.00527
PE(24:0/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
JEKO-1	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	1.85884
PC(o-22:2(13Z,16Z)/22:3(10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-16:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-XPVG-0726-SM-4B658	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
INSM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.7917
PMC5575985-mp2016192x4.xlsx-ST18-Unnamed_5_ST18	Rummagene Transcription Factor Associations 2026	1.0	null
PMC9046280-41467_2022_29963_MOESM8_ESM.xlsx-Supplementary_Fig_4B-Genes_annotated_to_enhancers_bound_by_ASCL1_ChIP_and_lost_expression_in_42D_K_D_ASCL1_ASCL1	Rummagene Transcription Factor Associations 2026	1.0	null
abnormal spleen morphology	MGI Mouse Phenotype Associations 2023	1.0	null
Perturb_14354_KD_TUT4/TUT7_SRP120600	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.99432
PC(P-18:1(9Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
POLR2A_GM12891_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(20:4(8Z,11Z,14Z,17Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
GSE217694_3_v_2_pold1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(18:1(11Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PMC7842189__F2	PFOCR Pathway Figure Associations 2023	1.0	null
Cells - Cultured fibroblasts	GTEx Tissue Gene Expression Profiles 2023	-1.0	-0.647706
PC(14:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GSE169697,GSE169725_0_v_5_prrx1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(15:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
MEF2A_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-UPK5-1626-SM-4JBHI	GTEx Tissue Sample Gene Expression Profiles	1.0	1.41636
PC(22:2(13Z,16Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:1(11Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
JHUEM3	CCLE Cell Line Gene Expression Profiles	-1.0	-1.69441
Perturb_10666_OE_HSPB2_SRP288471	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.61621
PC(24:0/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.094622
Perturb_12379_KO_SMARCA4_SRP324802	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	9.81719
PE(P-16:0e/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
BATF	ENCODE Transcription Factor Targets	1.0	null
PE(20:1(11Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-IB-AAUR-01A-21R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
outer CP in caudal cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.890059
PMC11461876-42003_2024_6975_MOESM3_ESM.xlsx-Supplementary_Data_1-Supplementary_Data_1_Differentially_Expressed_Genes_HSE_THP1_Vs_THP1_GLI2	Rummagene Transcription Factor Associations 2026	1.0	null
Myelin membrane	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.779
HNF1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99249
PE(22:0/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(11Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(14:1(9Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
MEF2C_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(18:1(11Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(15:0/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
CSTB_KO_GDS5090_398_mouse_cerebella	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
PE(P-18:1(11Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
GSE220813_0_v_1_zfp750_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(20:4(8Z,11Z,14Z,17Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.969614
Blood-memory b cell	Tabula Sapiens Gene-Cell Associations	1.0	-0.0871103
PE(20:4(8Z,11Z,14Z,17Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(9Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(9Z,12Z,15Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-AK-3426-01A-02R-1325-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_7732_KD_RRP6_SRP062389	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-15.4294
GSE185519_3_v_7_gilteritinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
cerebellar cortex_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.14428
Perturb_14118_KD_RPS6KB2_SRP187713	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-6.95339
corneal opacity	IMPC Knockout Mouse Phenotypes	1.0	null
GSE223540_0_v_3_anxa2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
DUSP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57228
PE(20:4(8Z,11Z,14Z,17Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:0/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:3(5Z,8Z,11Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_2362_KD_ZNF581_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	10.1854
n-acylphosphatidylethanolamine-specific phospholipase d activity	GO Molecular Function Annotations 2015	1.0	null
PC(18:2(9Z,12Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(9Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
RUNX3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mediodorsal nucleus of thalamus_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.48778
Perturb_3517_KD_RBM8A_ERP130710	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
USF2	ENCODE Transcription Factor Targets	1.0	null
H3K79me2_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040449
PE(22:0/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
mantle zone of r2Co	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.03279
PC(16:0/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(dm18:1(11Z)/dm18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE110178_2_v_3_tranylcypromine_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.349
GSE94814_2_v_0_reck_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_15441_KD_TMPOAS1_SRP273203	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
organelle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
PE(22:0/15:0)	HMDB Metabolites of Enzymes	1.0	null
PC(24:0/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-A6V1-01A-12R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary visual cortex (striate cortex, area V1/17)_8 yrs_M_12981	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.03238
GSE172295_1_v_2_sh3gl1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Perturb_9450_OE_SOX9_SRP297132	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-12.7962
H3K4me1_ES-E14_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
Perturb_2573_KD_HIF1A/HIF2A_ERP004269	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.00224
GTEX-QVJO-0011-R8A-SM-447C7	GTEx Tissue Sample Gene Expression Profiles	1.0	1.63127
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_1367_KD_IGF2BP1_SRP252209	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.98292
CBX3	ENCODE Transcription Factor Targets	1.0	null
NCI-H2461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00663
Infralimbic area, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.57997
FOXO1::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.8664
COLO 201	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.832763
GSE149903_6_v_1_myd88_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-T2IS-0011-R2A-SM-32QPF	GTEx Tissue Sample Gene Expression Profiles	1.0	3.09693
PE(16:0/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(8Z,11Z,14Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:1(13Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:2(9Z,12Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
CMIP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.16478
V, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.27284
GSE232836_2_v_6_morphine_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE73561,GSE73563_0_v_1_mef2c_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(16:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
RELA_GM19099_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(18:3(9Z,12Z,15Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(11Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(14:1(9Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
GSE174383_2_v_5_ly6d_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE118617,GSE118619_0_v_1_foxp1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE145171_0_v_1_prox1_human	RummaGEO Gene Perturbation Signatures	1.0	null
Superior olivary complex, medial part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.12174
PC(18:4(6Z,9Z,12Z,15Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
golgi apparatus part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.004005
decreased body weight	MGI Mouse Phenotype Associations 2023	1.0	null
APLN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.76981
PC(18:3(9Z,12Z,15Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(18:0/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
intracellular part	GO Cellular Component Annotations 2015	1.0	null
PC(P-18:1(11Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
PC(14:1(9Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
GSE137144_4_v_6_nlrp3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(20:1(11Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(4Z,7Z,10Z,13Z,16Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Brain - Hypothalamus	GTEx Tissue Gene Expression Profiles 2023	-1.0	-0.600988
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.275794
Cerebrospinal fluid t-tau levels	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.51549
PC(18:1(11Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
lingual gyrus, left, peristriate	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.222
GTEX-X261-0326-SM-3NMD4	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
RUNX3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(16:1(9Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01165
PC(18:3(6Z,9Z,12Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_3750_KD_NORAD_SRP149071	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.35867
PC(20:4(8Z,11Z,14Z,17Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:2(9Z,12Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PMC8020666-pnas.2015855118.sd11.xlsx-LPS_attenuatedResponse-Baboon_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_9027_KD_lncFAM_SRP377217	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-7.15371
PC(20:2(11Z,14Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
Muscular system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Perturb_12532_KO_SMARCA4_SRP324802	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.86733
Primary somatosensory area, trunk, layer 4	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.36868
NELFE	ENCODE Transcription Factor Targets	1.0	null
Perturb_2300_KD_BRCA1_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.85489
microcellular tegmental nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.35737
BCL11A_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE169152_5_v_6_ibrutinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
G48414YA	GlyGen Glycosylated Proteins	1.0	null
GSE152432_1_v_2_zrsr2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.03197
PC(18:0/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:4(7Z,10Z,13Z,16Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:2(13Z,16Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:0/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(15:0/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE143316_0_v_6_somatostatin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Perturb_16816_KD_Glut1_SRP387907	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-20.0
GTEX-QXCU-0126-SM-2TC5Q	GTEx Tissue Sample Gene Expression Profiles	1.0	0.983255
POU5F1	ChEA Transcription Factor Targets	1.0	null
H3K4me1_CH12.LX_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
PE(20:4(8Z,11Z,14Z,17Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(6Z,9Z,12Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(24:0/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
nucleus	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
NR1D1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.404
lateral part of r8B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.68163
GSE239578_0_v_4_cxadr_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(20:3(5Z,8Z,11Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PC(16:1(9Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
medial ganglionic eminence_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.52965
CUX1	ENCODE Transcription Factor Targets	1.0	null
UBC	Pathway Commons Protein-Protein Interactions	1.0	null
posteroventral (inferior) parietal cortex_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.05223
PC(16:1(9Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7410-01A-21R-2081-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(o-16:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
ERG	ChEA Transcription Factor Targets	1.0	null
Tauopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.383
PE(18:4(6Z,9Z,12Z,15Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
Nucleus sagulum	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.47578
PE(18:4(6Z,9Z,12Z,15Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(6Z,9Z,12Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:1(13Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.9272
thyroid_5d	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.900855
PC(18:1(11Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
ATM_knockout_75_GSE23116	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.44311
GSE235682_1_v_0_rbl2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(18:2(9Z,12Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(14:1(9Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
GSE111102,GSE111105_8_v_5_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
eye hemorrhage	IMPC Knockout Mouse Phenotypes	1.0	null
GTEX-NPJ8-0011-R9a-SM-2YUN5	GTEx Tissue Sample Gene Expression Profiles	1.0	1.1816
Cochlear nucleus, subpedunclular granular region	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01764
PC(24:1(15Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(14:0/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
ACSF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.58383
PE(P-18:1(11Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
GSE144231_4_v_1_cxcr2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_11094_KO_Regnase1_DRP004811	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	20.0
PE(16:0/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-FV-A3I0-01A-11R-A22L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC12048643-44318_2025_409_MOESM3_ESM.xlsx-regulonTargets-HSF2_HSF2	Rummagene Transcription Factor Associations 2026	1.0	null
Demyelinating disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.164
PC(18:0/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14625_KO_OGT_SRP146064	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-8.7736
Perturb_9353_OE_NRG1_SRP158425	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.57733
GSE252857_1_v_3_klf15_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
cingulate gyrus, retrosplenial part, right, inferior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.913555
Primary somatosensory area, unassigned, layer 4	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.01572
PE(15:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Fundus of striatum	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.28448
KNS81	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45513
PE(18:0/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PMC11063202-41420_2024_1940_MOESM2_ESM.xlsx-THP1-EP300_KOvsNontarget-gene_id_GLI2	Rummagene Transcription Factor Associations 2026	1.0	null
PC(18:1(11Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE123825_2_v_3_glud1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-3005-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
skeletalmuscle_b	HPA Tissue Sample Gene Expression Profiles	-1.0	-1.85091
Perturb_14589_KI_LAMC2_ERP136718	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
MXI1_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(18:1(11Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
POR_KO_GDS1678_761_mouse_ILEUM	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
H3K27ac_B cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Endosome	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
STAT4	MotifMap Predicted Transcription Factor Targets	1.0	null
PC(18:0/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1332
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-HM-A3JK-01A-11R-A32Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
G38663NM	GlyGen Glycosylated Proteins	1.0	null
GTEX-PWOO-2326-SM-2S1PQ	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(20:0/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
scalp	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.71583
GSE113106_3_v_4_dnm2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
nucleus sagulum, superficial part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.95656
PE(22:1(13Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
mediodorsal nucleus of thalamus_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.19683
Liver hepatocellular carcinoma_LIHC_TCGA-FV-A495-01A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC9894241-pnas.2211429119.sd05.xlsx-G7_REST-Dataset_S6_Differentially_expressed_genes_in_G1-G8_REST	Rummagene Transcription Factor Associations 2026	1.0	null
GSE111102,GSE111105_1_v_7_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Mesothelioma_MESO_TCGA-MQ-A4KX-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(20:5(5Z,8Z,11Z,14Z,17Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_6698_KD_ALAL1_SRP214241	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.88993
GSE181865_0_v_1_zbtb46_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
anterior (rostral) cingulate (medial prefrontal) cortex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	0.888989
PMC8379183-41467_2021_25326_MOESM9_ESM.xlsx-SALL4_unique_peaks-Unnamed_15_SALL4	Rummagene Transcription Factor Associations 2026	1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_2313_KD_LUC7L2_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-18.5229
endocytosis	GO Biological Process Annotations 2023	1.0	null
Perturb_2067_KD_BMAL1_SRP041298	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.64452
pre-B cell receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.623
STAT1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAZ	ENCODE Transcription Factor Targets	1.0	null
paracentral lobule, posterior part, right, bank of cingulate sulcus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.908055
Perturb_2357_KD_PRRX1_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
Perturb_8492_KD_Mir34a_SRP133851	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	5.9161
PE(20:5(5Z,8Z,11Z,14Z,17Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_1657_KO_Prkcd_SRP386893	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-5.08395
PC(22:4(7Z,10Z,13Z,16Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:1(11Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE133516_0_v_1_kat7_human	RummaGEO Gene Perturbation Signatures	1.0	null
LMO2-20887958-HPC-7-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
PE(14:1(9Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
Phospholipid metabolism	Reactome Pathways 2024	1.0	null
GSE214248_0_v_1_cxcl8_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE152441,GSE152442_1_v_4_folic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
bonemarrow_6b	HPA Tissue Sample Gene Expression Profiles	1.0	1.34695
Autosomal dominant cerebellar ataxia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.052
PE(18:2(9Z,12Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(4Z,7Z,10Z,13Z,16Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
hematopoietic progenitor cell differentiation	GO Biological Process Annotations 2025	1.0	null
PE(20:1(11Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
nuclear outer membrane-endoplasmic reticulum membrane network	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Lung squamous cell carcinoma_LUSC_TCGA-85-6175-01A-11R-1820-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
inferolateral temporal cortex (area TEv, area 20)_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.67185
PC(18:1(9Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE153189_1_v_3_interferon gamma_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PE(20:1(11Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(6Z,9Z,12Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
496100615_HIP_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.81328
H3K4me1_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.025
cerebellar white matter	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.12906
tonsil_8e1	HPA Tissue Sample Gene Expression Profiles	1.0	1.49825
Pheochromocytoma and Paraganglioma_PCPG_TCGA-RW-A67W-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-REY6-2426-SM-48FF5	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.8955
GTEX-PLZ6-1426-SM-2S1OQ	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
inner SZ in superolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.93158
Perturb_9285_KD_LMTK2_SRP276928	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-9.5764
GSE65617_2_v_4_aire_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Lung adenocarcinoma_LUAD_TCGA-49-4505-01A-01R-1206-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(9Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:5(5Z,8Z,11Z,14Z,17Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
hematopoietic progenitor cell differentiation	GO Biological Process Annotations 2015	1.0	null
SPI1-22790984-ERYTHROLEUKEMIA-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
GSE167004_0_v_3_thpo_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(22:4(7Z,10Z,13Z,16Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(24:1(15Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6943-01A-11R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZFP14	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.7675
Perturb_2351_KD_CNBP_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
NCI-H2803	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19767
PE(15:0/15:0)	HMDB Metabolites of Enzymes	1.0	null
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.963282
PE(18:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(9Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:2(11Z,14Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:1(11Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(9Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PMC11892598-pnas.2417308122.sd05.xlsx-DEGs_of_RORC_cluster-Unnamed_3_RORC	Rummagene Transcription Factor Associations 2026	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5877-01A-11R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BATF::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7942
Pharynx	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Perturb_3515_KD_EIF4A3_ERP130710	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
PE(20:3(5Z,8Z,11Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
H3K4me3_GM12866_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01874
Skin Cutaneous Melanoma_SKCM_TCGA-DA-A3F2-06A-11R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-WY7C-2526-SM-3NB2N	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.82838
PC(18:3(9Z,12Z,15Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-XJ-A9DI-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-744	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
PC(14:0/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4847-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(20:3(8Z,11Z,14Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
SUM52PE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.822125
GTEX-OIZH-0926-SM-48TBR	GTEx Tissue Sample Gene Expression Profiles	1.0	1.16316
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A81H-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_10194_KD_TAF1_SRP149373	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
Perturb_1267_KD_Prmt7_SRP279352	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	2.3908
PC(14:1(9Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
Muscle - Skeletal	GTEx Tissue Gene Expression Profiles 2023	1.0	3.69706
Human - PBMC - L3 - Conventional Dendritic Cell 2_2	HuBMAP Azimuth Cell Type Annotations	1.0	null
Primary somatosensory area, trunk, layer 5	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.65974
PE(20:3(8Z,11Z,14Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-N7MS-0011-R4a-SM-2HMKW	GTEx Tissue Sample Gene Expression Profiles	1.0	0.93017
H3K4me1_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(16:1(9Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-QVJO-0011-R9A-SM-2S1QH	GTEx Tissue Sample Gene Expression Profiles	1.0	2.14662
PE(20:4(5Z,8Z,11Z,14Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
PC(P-16:0/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:2(13Z,16Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
SIRT3_KO_GDS4817_417_mouse_liver	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
GSE144443_0_v_1_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Nephrotic syndrome type 7	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.314
FOXM1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(8Z,11Z,14Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
MTA3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE103068_0_v_3_volasertib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Rheumatoid arthritis disease specific synovial fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.655
collagen disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.686691
GSE230656_0_v_1_gsdmd_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.704
PE(20:2(11Z,14Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-NPJ7-0011-R8a-SM-2I3G2	GTEx Tissue Sample Gene Expression Profiles	1.0	1.14801
GSE212772_0_v_1_ncoa4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PMC12048643-44318_2025_409_MOESM3_ESM.xlsx-regulonTargets-FOS_FOS	Rummagene Transcription Factor Associations 2026	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-5470-01A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PECAPJ34CLONEC12	CCLE Cell Line Gene CNV Profiles	1.0	1.35885
orbital frontal cortex_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-0.89588
ventral tuberomammillary nucleus, intermediate part (histaminergic)	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.22694
GTEX-RUSQ-1926-SM-2TF6K	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
RARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.338
lymphocyte	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-NA-A4QY-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(14:0/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.341
Lung squamous cell carcinoma_LUSC_TCGA-58-8386-11A-01R-2296-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NANOG-18347094-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
GSE225869_2_v_0_cd44_human	RummaGEO Gene Perturbation Signatures	1.0	null
arthritis, rheumatoid	GAD Gene-Disease Associations	1.0	null
SETDB1_U2OS_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-NPJ7-0011-R1a-SM-3GACT	GTEx Tissue Sample Gene Expression Profiles	1.0	1.00878
PMC11925450-elife-96850-supp2.xlsx-DNMT1_KO_vs_DNMT1_L1TD1_dKO_res-Unnamed_0_DNMT1	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-QESD-1626-SM-2S1RB	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2GK-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
Microglial cell_Embryonic prefrontal cortex_Human	CellMarker Gene-Cell Type Associations	1.0	null
H3K27ac_bone marrow_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Arthritis, Rheumatoid	dbGAP Gene-Trait Associations	1.0	1.16559
GTEX-XMD1-2826-SM-4AT5F	GTEx Tissue Sample Gene Expression Profiles	1.0	0.888834
GSE119978,GSE180930_6_v_1_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE180200,GSE180201_12_v_9_qpctl_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(P-18:1(9Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_13050_KD_Gad1_SRP304099	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	14.8363
Perturb_11541_Mut_KRAS_SRP175175	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-7.65552
Perturb_1434_KO_Kmt2c_SRP283007	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	8.67707
FOXO1::ELK3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.6118
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-BI-A20A-01A-11R-A14Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(18:3(9Z,12Z,15Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(14:1(9Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(4Z,7Z,10Z,13Z,16Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
LMNB2_02_191	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	3.70044
H3K9me3_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
GSE123825_0_v_3_glutamine_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PC(22:0/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE172295_0_v_2_sh3gl1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.24751
Perturb_15360_KO_Tfap4_SRP212619	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	3.96363
Perturb_10403_KI_LAMC2_ERP136718	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	6.61482
PC(20:3(8Z,11Z,14Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:0/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE254517_3_v_0_irf7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
medial (main) part of Med	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.41247
PMC9195629-Table1.xlsx-Supplementary_Table_1-JUN_JUN	Rummagene Transcription Factor Associations 2026	1.0	null
PC(20:3(5Z,8Z,11Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-P4PP-0326-SM-33HC4	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(22:1(13Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:1(11Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
GSE113734_3_v_0_qprt_human	RummaGEO Gene Perturbation Signatures	1.0	null
Jun	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.8438
GSE203158_5_v_14_aire_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-P4QS-1626-SM-2S1NH	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
H3K4me3_bone marrow_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
GTEX-OHPN-2726-SM-2I5H4	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.958801
GSE174498,GSE174500_3_v_8_asparaginase_human	RummaGEO Drug Perturbation Signatures	1.0	null
PE(P-18:1(11Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
hypersensitivity reaction disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.348981
hemopoiesis	GO Biological Process Annotations 2023	1.0	null
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13251
Perturb_12270_KD_EIF4G2_SRP149421	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.04599
PE(22:5(4Z,7Z,10Z,13Z,16Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-WQUQ-1426-SM-3MJFD	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(18:1(9Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Cerebellum	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.10627
GTEX-QVJO-0126-SM-3GIK4	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(22:5(7Z,10Z,13Z,16Z,19Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:0/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
OVCAR5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53136
Diabetes Mellitus	CTD Gene-Disease Associations	1.0	1.06297
PC(24:0/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE162276_2_v_3_pparg_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HW-A5KM-01A-11R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LOUNH91	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34388
supramarginal gyrus, left, superior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.88309
SW 1990	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.73008
GTEX-QCQG-1726-SM-3GIJ9	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
endoplasmic reticulum membrane	GO Cellular Component Annotations 2025	1.0	null
GSE145445,GSE145454_0_v_1_cop1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(20:3(8Z,11Z,14Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE137653_2_v_3_siglecf_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
769-P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56937
t30-blood-rna_consensus	MoTrPAC Rat Endurance Exercise Training	1.0	2.46562
PC(22:4(7Z,10Z,13Z,16Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE102505_6_v_0_tunicamycin_human	RummaGEO Drug Perturbation Signatures	1.0	null
PC(20:1(11Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
intracellular organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
PE(20:2(11Z,14Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
17910759-TableS5	GeneSigDB Published Gene Signatures	1.0	null
PC(16:1(9Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
Placenta	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
MDAMB468	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.04899
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-MU-A51Y-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(20:2(11Z,14Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14052_OE_NFIB_SRP281947	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
Perturb_15195_KD_FXN_SRP313999	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-18.3372
GSE89767_1_v_5_cebpa_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
disease	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	1.00628
Pancreatic adenocarcinoma_PAAD_TCGA-HV-A5A4-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(24:1(15Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
WRNIP1	ENCODE Transcription Factor Targets	1.0	null
GSE186647,GSE217288_1_v_4_hnrnpc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SK-CO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26731
G122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.833385
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058195
cortex of cerebellar vermis	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.15967
PE(14:1(9Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-85-A4PA-01A-11R-A24Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H1-8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.71125
PC(20:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_7006_KO_Mtfp1_ERP132295	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	5.89484
CTCF_GM12867_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
H2AFZ_B cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Perturb_2324_KD_SF3A1_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-13.5842
PC(20:3(5Z,8Z,11Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
GSE81803,GSE81912_3_v_5_fmr1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE93156_1_v_0_idelalisib_human	RummaGEO Drug Perturbation Signatures	1.0	null
PE(24:1(15Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(8Z,11Z,14Z,17Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
GSE132386_1_v_0_ppara_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
STAT5A	ENCODE Transcription Factor Targets	1.0	null
Perturb_4330_KD_PTGS1_SRP055392	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-17.5086
PC(14:1(9Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_7931_KD_ZFC3H1_SRP222099	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.29028
PC(16:1(9Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
COLO 205	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06289
striatum (corpus striatum)	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.16063
PE(20:1(11Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
Crus 2, granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.01348
Perturb_16418_Mut_Gli2_SRP154383	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	11.8831
COCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles	1.0	null
SETDB1	ENCODE Transcription Factor Targets	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-16:0/15:0)	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(11Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_3991_KD_Zeb1_ERP109420	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-8.63451
globus pallidus, external segment, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.13312
PE(24:1(15Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE168807_6_v_7_dnmt3a_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE217363_4_v_1_nlrp3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_7762_KD_IER3_SRP348787	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-7.16648
PE(P-18:1(9Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
PMC8283745__F2	PFOCR Pathway Figure Associations 2024	1.0	null
PE(14:0/24:0)	HMDB Metabolites of Enzymes	1.0	null
Collagen type IV trimer	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.766
PE(18:2(9Z,12Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(15:0/14:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-PLZ4-0008-SM-48TE6	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(22:1(13Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE152441,GSE152442_7_v_3_folic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PE(20:0/14:0)	HMDB Metabolites of Enzymes	1.0	null
PC(18:0/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
bmi1_17452456_medulloblastoma_lof_human_gpl570_gds2724	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.098761
Salivary_Gland-macrophage	Tabula Sapiens Gene-Cell Associations	1.0	5.34091
PE(18:1(9Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-WEY5-1926-SM-3GIL8	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(18:3(9Z,12Z,15Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
Inflammation	CTD Gene-Disease Associations	1.0	1.13621
Perturb_15559_KO_SLFN11_SRP327912	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	10.4632
Nr1h2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	14.5251
CLPP_KO_GDS4791_543_mouse_brain	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Perturb_8038_KO_FOXA2_SRP350523	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	6.18834
JUN	ENCODE Transcription Factor Targets	1.0	null
PC(18:1(11Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_17242_KD_IRF1_SRP337933	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.9857
VZ in caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.89313
GSE160246_9_v_5_cpeb4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(18:3(9Z,12Z,15Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-Q2AG-0011-R2A-SM-2HMIT	GTEx Tissue Sample Gene Expression Profiles	1.0	0.930033
GTEX-U4B1-0008-SM-4DXUW	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.861338
Perturb_8755_KD_SON_SRP300475	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
PE(16:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
PC(14:0/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-TKQ1-1126-SM-4GIAZ	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(dm18:1(11Z)/dm18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_7925_KD_ZCCHC8_SRP222099	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.643
MDAMB453	DepMap CRISPR Gene Dependency	1.0	2.65328
GTEX-N7MS-0011-R2a-SM-2HML6	GTEx Tissue Sample Gene Expression Profiles	1.0	1.29817
PC(14:1(9Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(16:1(9Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-R55D-0626-SM-3GAD5	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A3C8-06A-12R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(14:1(9Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-85-8049-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
posteroventral (inferior) parietal cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.23243
PE(22:4(7Z,10Z,13Z,16Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE140092_2_v_1_socs3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
H3K4me3_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Perturb_3914_KD_CTNNB1_DRP003300	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	8.08073
lipase activity	GO Molecular Function Annotations 2015	1.0	null
GSE246195,GSE246305_1_v_0_sin3a_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
POU2F2_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Perturb_6684_KD_SMARCA2_SRP378606	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
Aiolos_NULL MUTATION_GDS3473_572_mouse_Bone marrow pre-BII cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
PE(P-16:0e/0:0)	HMDB Metabolites of Enzymes	1.0	null
Medial habenula	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.38629
PC(o-18:1(11Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GSE214514_3_v_2_bmal1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
ZNF263	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.293
GSE201309_5_v_7_matrine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
TFAM	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.32401
GSE124932_2_v_1_sarm1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
lymph node	HPA Tissue Gene Expression Profiles	1.0	0.88515
GTEX-NFK9-0926-SM-2HMJU	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GSE203072_2_v_3_rpl3l_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(P-18:0/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:2(9Z,12Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
CCK81	DepMap CRISPR Gene Dependency	1.0	2.80156
GSE174498,GSE174500_3_v_7_asparaginase_human	RummaGEO Drug Perturbation Signatures	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
H2AFZ_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(18:1(11Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:2(11Z,14Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(24:1(15Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_12667_OE_MX2_SRP308919	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-6.04023
Perturb_2337_KD_WBP11_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.54303
PE(20:4(5Z,8Z,11Z,14Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:5(5Z,8Z,11Z,14Z,17Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
PMC10807933-NIHMS1954791-supplement-4.xlsx-Bag6_KD_proteomics-Unnamed_5_AR	Rummagene Transcription Factor Associations 2026	1.0	null
PC(P-18:1(9Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_3559_KD|OE_NOTCH3|MYC/HHEX_SRP174604	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.25491
orbital frontal cortex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	0.999971
GSE208254_3_v_2_irf8_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Perturb_3194_KO_SE12313b_SRP266195	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.85953
Pparg::Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.183
Bed nuclei of the stria terminalis, anterior division, anterolateral area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.32885
PC(o-18:1(9Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(16:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE188870,GSE188871_1_v_2_kat7_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_265_OE_DPF3a_SRP322020	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.99663
posterior (caudal) superior temporal cortex (area 22c)_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.93444
PE(18:1(11Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(9Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
Paraflocculus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.19536
hsa-miR-4308	TargetScan Predicted Conserved microRNA Targets	1.0	0.632343
Human - Lung v2 (HLCA) - Finest - Plasmacytoid DCs	HuBMAP Azimuth Cell Type Annotations	1.0	null
PE(P-18:0/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
CW-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
endomembrane system	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A2NC-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14415_KD_DKC1_SRP186375	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.34507
mediodorsal nucleus of thalamus_37 pcw_M_263195015	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	0.912364
PC(22:5(7Z,10Z,13Z,16Z,19Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.42235
Synthesis of IP3 and IP4 in the cytosol	Reactome Pathways 2014	1.0	null
Perturb_1906_KO_Msr1_SRP216004	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	6.18929
Nanog	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.1405
PC(18:1(11Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
PE(14:1(9Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE106170_1_v_0_nap1l3_human	RummaGEO Gene Perturbation Signatures	1.0	null
Seminal vesicle	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PC(22:4(7Z,10Z,13Z,16Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
dorsolateral prefrontal cortex_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-0.922649
Muscle	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PE(18:2(9Z,12Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Primary immunodeficiency disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.783
GSE254517_1_v_0_irf7_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EA-A5ZE-01A-11R-A28H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE164508_1_v_0_bortezomib_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042205
GSE161800_0_v_1_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
r9 part of the inferior olive	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.21746
PC(16:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
RELA_GM18951_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(20:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(o-16:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(16:1(9Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_15348_KD_SMARCD3_SRP329316	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.5369
Scleroderma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.962
regulation of cytokine production involved in inflammatory response	GO Biological Process Annotations 2025	1.0	null
PC(20:2(11Z,14Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
PE(14:0/15:0)	HMDB Metabolites of Enzymes	1.0	null
phosphatidylinositol phospholipase c activity	GO Molecular Function Annotations 2015	1.0	null
increased monocyte cell number	MGI Mouse Phenotype Associations 2023	1.0	null
PC(22:1(13Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
Role of phospholipids in phagocytosis	Reactome Pathways 2024	1.0	null
GSE131649_6_v_7_hemin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
regulation of cytokine production	GO Biological Process Annotations 2023	1.0	null
GSE119694_1_v_0_lifr_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-P4PP-0926-SM-48TBZ	GTEx Tissue Sample Gene Expression Profiles	1.0	1.20287
GTEX-N7MS-0007-SM-2D7W1	GTEx Tissue Sample Gene Expression Profiles	1.0	1.11054
Metabolism	Reactome Pathways 2024	1.0	null
C32	DepMap CRISPR Gene Dependency	1.0	3.87612
endoplasmic reticulum	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE231641_0_v_1_robo1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
H3K4me3_GM06990_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
endocytic vesicle	GO Cellular Component Annotations 2025	1.0	null
SNU1272	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36035
Perturb_15023_KD_RelA_SRP078053	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-10.7458
PC(22:1(13Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(8Z,11Z,14Z,17Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-OIZF-0006-SM-2I5GQ	GTEx Tissue Sample Gene Expression Profiles	1.0	0.926151
primary visual cortex (striate cortex, area V1/17)_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.32472
Perturb_2302_KD_BRCA2_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.14315
PC(20:4(5Z,8Z,11Z,14Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
GSE63048_11_v_8_morc1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Lung adenocarcinoma_LUAD_TCGA-69-7974-01A-11R-2187-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
SH3BGRL3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.32959
inferolateral temporal cortex (area TEv, area 20)_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-0.911233
PC(22:4(7Z,10Z,13Z,16Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-SN8G-0326-SM-32PLG	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.832009
PC(20:3(8Z,11Z,14Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
ETV3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0004
MTFP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.46966
GSE188870,GSE188871_0_v_2_kat7_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PRDM16_DEPLETION_GDS4021_460_mouse_WAT - white adipose tissue (stromal-vascular cells)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
testis_7d	HPA Tissue Sample Gene Expression Profiles	-1.0	-1.16094
PC(18:1(9Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
hippocampus (hippocampal formation)_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.0133
PE(22:1(13Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(16:1(9Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(9Z,12Z,15Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
GSE180277_0_v_1_bach2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
outer SZ in posteroinferior (ventral) parietal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.993332
PE(20:3(8Z,11Z,14Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_17712_KD_PPARG_SRP383556	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.8183
Edinger-Westphal nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.0013
PE(16:1(9Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
STAT5A_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
membrane part	GO Cellular Component Annotations 2015	1.0	null
GTEX-R55E-0011-R1A-SM-2TC6N	GTEx Tissue Sample Gene Expression Profiles	1.0	1.29614
GTEX-X4XX-2926-SM-3NMB1	GTEx Tissue Sample Gene Expression Profiles	1.0	1.00522
PE(P-18:0/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:0/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(9Z,12Z,15Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
MDAMB415	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.939951
CTCF_GM12873_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(20:0/16:0)	HMDB Metabolites of Enzymes	1.0	null
PMC4531812-13058_2015_618_MOESM11_ESM.xlsx-TCGA_Sparse_KM-TFAP2B_TFAP2B	Rummagene Transcription Factor Associations 2026	1.0	null
Perturb_14302_KD_RBFOX2_SRP230637	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.01124
Perturb_6443_KO_YAP_SRP134183	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.4836
GSE120612_7_v_5_etoposide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PE(22:4(7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_12256_KO_CD274_SRP215305	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
LXFL529	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21904
Lingula (I), granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.16151
Type 2 diabetes mellitus_Pancreas_GSE2470	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.81743
Perturb_1178_KD_CBFB_ERP128097	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
HEC151	CCLE Cell Line Gene CNV Profiles	-1.0	-1.99764
GSE146546,GSE146807_0_v_1_igf2bp1_human	RummaGEO Gene Perturbation Signatures	1.0	null
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.893673
posteroventral (inferior) parietal cortex_4 mos_M_12890	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.10437
GSE141328_3_v_2_rock2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(22:2(13Z,16Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
periventricular stratum of r9BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.00612
GSE183251_4_v_0_cyp2c70_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Disease Progression	HuGE Navigator Gene-Phenotype Associations	1.0	null
EP300_GM12878_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(dm16:0/dm18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_8805_KD_PTB_SRP069229	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
PE(20:5(5Z,8Z,11Z,14Z,17Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-OHPL-1626-SM-2HMIR	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
PE(20:0/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:0/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:1(13Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_7648_KD_METTL3_SRP154311	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.79454
Kidney renal clear cell carcinoma_KIRC_TCGA-MM-A84U-01A-11R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_17642_OE_YAP_SRP298391	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.99433
HDAC3_KO_GDS4886_29_mouse_heart - 6 week old	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
GTEX-SUCS-1626-SM-32PLS	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.923577
SG in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.19554
PC(22:5(4Z,7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(11Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
GSE44157,GSE44163_1_v_0_nr6a1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
liminal reticular formation of m2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.44661
retina	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.855527
primary visual cortex (striate cortex, area V1/17)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.30802
KNS-62	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PC(o-24:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
HCC2935	CCLE Cell Line Gene CNV Profiles	1.0	1.36455
GTEX-U3ZG-0001-SM-47JYF	GTEx Tissue Sample Gene Expression Profiles	1.0	0.850069
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PC(14:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_14955_OE_PRDM1_SRP287780	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	5.2695
PE(20:3(8Z,11Z,14Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:0/24:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-WFON-2326-SM-3LK7M	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
HCC4006	CCLE Cell Line Gene Expression Profiles	-1.0	-2.52882
PC(22:0/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-T6MN-0326-SM-32PMK	GTEx Tissue Sample Gene Expression Profiles	1.0	0.852492
cytoplasmic part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
PC(22:0/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(9Z,12Z,15Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
H3K9me3_Adult Liver	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
GSE153010_1_v_0_sprr2f_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(20:2(11Z,14Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-X8HC-1626-SM-46MWE	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GTEX-NL4W-0011-R5a-SM-2I3GD	GTEx Tissue Sample Gene Expression Profiles	1.0	1.09482
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A3JH-06A-11R-A21D-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-QEG4-1126-SM-2S1P7	GTEx Tissue Sample Gene Expression Profiles	1.0	1.01628
Perturb_16788_KD_ETS1_SRP131807	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.80227
H3K4me1_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
lateral orbital gyrus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.31979
PE(20:2(11Z,14Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
interleukin-35 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.350622
PC(18:3(6Z,9Z,12Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14127_KO_TP53/CDKN2A/PTEN/NF1_SRP258861	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	5.75903
NFIC_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Human - PBMC - L2 - Plasmacytoid Dendritic Cell	HuBMAP Azimuth Cell Type Annotations	1.0	null
Ribonuclease H2 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.74
GSE210580_5_v_7_rag2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
superficial stratum of m1AL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.45279
Central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.42
PE(20:4(5Z,8Z,11Z,14Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(11Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03939
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GSE185519_3_v_0_gilteritinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
PC(18:1(11Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
16651409-SuppTable2	GeneSigDB Published Gene Signatures	1.0	null
Nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.425
PE(24:1(15Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
GSE232223_1_v_0_letmd1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
internal granular layer of CbVCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.20976
Primary motor area, Layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.97886
Perturb_15186_KD_CPSF1_SRP186931	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	13.4816
NCIH1944	CCLE Cell Line Gene Expression Profiles	-1.0	-1.91462
single-organism process	GO Biological Process Annotations 2015	1.0	null
PE(14:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
PC(14:1(9Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE110178_2_v_0_tranylcypromine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PE(22:0/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PRPF4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.29125
GSE195582_2_v_1_pim1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
myeloid progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079015
GTEX-WHPG-0826-SM-3NMBF	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
dorsolateral prefrontal cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-0.875933
PE(18:2(9Z,12Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(11Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
Human - Fetal Development - L2 - Pancreas-Myeloid cells	HuBMAP Azimuth Cell Type Annotations	1.0	null
GTEX-PLZ5-0326-SM-3P614	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.911517
inferolateral temporal cortex (area TEv, area 20)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	0.83867
Perturb_533_OE_EWSFLI1_SRP033559	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	5.92716
H3K27me3_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Lung adenocarcinoma_LUAD_TCGA-93-7347-01A-11R-2187-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(22:0/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_7930_KD_ZCCHC8/ZFC3H1_SRP222099	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.99609
GSE158715_2_v_4_cyp1b1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
increased marginal zone B cell number	MGI Mouse Phenotype Associations 2023	1.0	null
Tonsil	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
skeletalmuscle_c	HPA Tissue Sample Gene Expression Profiles	-1.0	-1.22638
anterior (rostral) cingulate (medial prefrontal) cortex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.09484
Flower stalk	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.508
Perturb_6840_KD_lncLUCRC_SRP218870	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.45985
PC(20:4(5Z,8Z,11Z,14Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-R53T-1826-SM-3GIJX	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GTEX-V1D1-0003-SM-3NMDP	GTEx Tissue Sample Gene Expression Profiles	1.0	1.24244
PC(18:0/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-QH-A6CV-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
single-organism cellular process	GO Biological Process Annotations 2015	1.0	null
PE(18:3(6Z,9Z,12Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PE(14:1(9Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_8409_KO_Yap1/Wwtr1_SRP143461	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	6.01174
PMC8144624-41598_2021_90212_MOESM2_ESM.xlsx-6_hrs_ps_LPS-Duck_gene_name_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
GSE95077_5_v_4_amiloride_human	RummaGEO Drug Perturbation Signatures	-1.0	null
cellular metabolic process	GO Biological Process Annotations 2015	1.0	null
GTEX-SNMC-1426-SM-2XCFM	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Perturb_3516_KD_MAGOH/MAGOHB_ERP130710	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE153137,GSE153140_2_v_0_mettl5_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-TN-A7HL-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(P-18:1(9Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_13660_KD_FOXO3_SRP325840	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.40077
PE(16:1(9Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
supraoptic nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.03467
Integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.152
Intracellular immature spore	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.557
PE(18:3(9Z,12Z,15Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
CLTB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.61321
GSE140200_1_v_0_trim59_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE140200_2_v_3_trim59_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(P-18:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
organic substance catabolic process	GO Biological Process Annotations 2015	1.0	null
dorsolateral prefrontal cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.926618
Perturb_15174_KD_LOC157273_SRP238261	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.40083
Perturb_12352_KD_DHX8_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.84018
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.92789
PC(20:3(5Z,8Z,11Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
anterior (rostral) cingulate (medial prefrontal) cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-0.849772
GTEX-WH7G-0002-SM-4LVN9	GTEx Tissue Sample Gene Expression Profiles	1.0	1.23454
PE(20:1(11Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
abnormal coat/ hair morphology	MPO Gene-Phenotype Associations	1.0	null
PE(22:2(13Z,16Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-OHPL-0326-SM-33HC8	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.873424
GTEX-QVJO-0011-R1A-SM-2S1QI	GTEx Tissue Sample Gene Expression Profiles	1.0	1.16712
GTEX-T5JW-0003-SM-3NMAD	GTEx Tissue Sample Gene Expression Profiles	1.0	1.20227
abnormal peritoneal macrophage morphology	MGI Mouse Phenotype Associations 2023	1.0	null
GSE181461_1_v_4_trim28_human	RummaGEO Gene Perturbation Signatures	1.0	null
NUDT16	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.57288
glia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.375368
PE(22:4(7Z,10Z,13Z,16Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-7745-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-BD-A3EP-01A-11R-A22L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(o-22:2(13Z,16Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(14:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
GSE228413_4_v_1_mavs_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
NANOG-18347094-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
decreased circulating calcium level	MGI Mouse Phenotype Associations 2023	1.0	null
496100574_HIP_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.33662
Perturb_3940_KD_IRGM_ERP122050	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.36992
Perturb_456_KD_SNHG17_SRP199046	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.44998
PE(20:5(5Z,8Z,11Z,14Z,17Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
PC(o-18:2(9Z,12Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(14:1(9Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GSE162276_2_v_3_rosiglitazone_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
ZNF175	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.9458
membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
PC(20:4(5Z,8Z,11Z,14Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_9152_KD_DDX21_SRP327839	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.26881
Nodulus (X), granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.21455
PE(18:0/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(9Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
GSE133516_5_v_3_kat7_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(22:1(13Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-A7NM-01A-21R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
decreased body size	MGI Mouse Phenotype Associations 2023	1.0	null
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041124
GK_KO_GDS2610_162_mouse_Brown adipose tissue	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Mesothelioma_MESO_TCGA-MQ-A4LC-01A-31R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-S3XE-1726-SM-3K2AM	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(18:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-22-1000-01A-01R-A32Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_7563_KD_UPF1_SRP322775	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.91787
r2 part of lateral pontine nuclei	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08227
renal glomerular immunoglobulin deposits	MGI Mouse Phenotype Associations 2023	1.0	null
PC(16:0/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
HDMYZ	DepMap CRISPR Gene Dependency	1.0	5.5015
PE(22:2(13Z,16Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
Ascl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.3027
PC(18:0/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Presubiculum, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.35693
GSE162739_4_v_1_bap1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GTEX-XMD1-0011-R9A-SM-4AT49	GTEx Tissue Sample Gene Expression Profiles	1.0	1.28762
PE(22:2(13Z,16Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Periventricular hypothalamic nucleus, posterior part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.36956
GSE171837_3_v_1_bortezomib_human	RummaGEO Drug Perturbation Signatures	1.0	null
striatum_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	2.53335
cerebellar hemisphere	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.10447
GSE149943_2_v_0_cd8a_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-UPK5-2026-SM-4JBIM	GTEx Tissue Sample Gene Expression Profiles	1.0	1.36277
r7 portion of the hypoglossal motor nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.11529
RCOR1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
trans-Golgi network membrane	GO Cellular Component Annotations 2023	1.0	null
PE(22:0/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
EPHX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14487
GTEX-OOBJ-0926-SM-48TDO	GTEx Tissue Sample Gene Expression Profiles	1.0	2.12724
ATF2_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(15:0/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:0/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
Systemic lupus erythematosus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.555
PE(P-18:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(16:0/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
SPI1-23547873-NB4-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GTEX-R55E-0526-SM-2TC6B	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(O-18:1(1Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_5287_KO_Setdb1_SRP226379	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	3.57042
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_12031_KD_EFEMP1_SRP213615	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.21558
PC(18:4(6Z,9Z,12Z,15Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4869-01A-02R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(20:3(5Z,8Z,11Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
GSE240645_3_v_2_u90926_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(22:2(13Z,16Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_9112_KD_STAT3_SRP363695	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.59456
CTNNB1-20460455-HCT116-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
dexamethasone_rattus norvegicus_gpl1355_gse29912	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
GTEX-P4QT-1626-SM-2S1NP	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(22:5(4Z,7Z,10Z,13Z,16Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
decreased B-1 B cell number	MGI Mouse Phenotype Associations 2023	1.0	null
PE(24:0/24:0)	HMDB Metabolites of Enzymes	1.0	null
ZNF24_01_353	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.65275
GSE100316_5_v_2_mtor_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Ether lipid metabolism	KEGG Pathways 2026	1.0	null
SF268	CCLE Cell Line Gene CNV Profiles	1.0	1.50396
POU2F2_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(20:1(11Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_17376_KD_E2f1_SRP190223	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-6.17939
GSE100316_5_v_6_mtor_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
NOMO1	CCLE Cell Line Gene Expression Profiles	1.0	3.40795
ME1	CCLE Cell Line Gene Expression Profiles	1.0	1.85724
GSE234340_12_v_7_muc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(18:0/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(14:1(9Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:2(13Z,16Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(11Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-REY6-0926-SM-48FDA	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.82896
GSE144443_5_v_1_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GTEX-R55C-1726-SM-3GADJ	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GSE110178_5_v_6_tranylcypromine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PE(20:3(8Z,11Z,14Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
PC(18:2(9Z,12Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
spleen	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.868511
Orbital area, medial part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	3.15503
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06289
PC(18:1(11Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
L-363	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75858
DYRK2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.15694
USF2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(22:5(4Z,7Z,10Z,13Z,16Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
GSE139992_1_v_0_mboat7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(20:1(11Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
vacuole	LOCATE Predicted Protein Localization Annotations	1.0	null
Primary somatosensory area, mouth, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	3.07124
PE(14:1(9Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(o-18:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-OIZI-0626-SM-2XCEH	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Perturb_14306_KD_SRSF1_SRP230637	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.19765
GTEX-XPVG-0626-SM-4B65B	GTEx Tissue Sample Gene Expression Profiles	1.0	0.879573
Human - PBMC - L3 - Plasmacytoid Dendritic Cell	HuBMAP Azimuth Cell Type Annotations	1.0	null
primary motor cortex (area M1, area 4)_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.21567
PC(20:4(8Z,11Z,14Z,17Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE129389_0_v_4_tropifexor_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PC(18:2(9Z,12Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-RU72-0011-R2A-SM-2TF6O	GTEx Tissue Sample Gene Expression Profiles	1.0	0.849801
PC(20:4(8Z,11Z,14Z,17Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-X638-0005-SM-47JX6	GTEx Tissue Sample Gene Expression Profiles	1.0	1.6908
PE(24:1(15Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
GTEX-Q2AH-0226-SM-48U1I	GTEx Tissue Sample Gene Expression Profiles	1.0	1.69581
PE(20:4(5Z,8Z,11Z,14Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:3(5Z,8Z,11Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14376_KD_MECOM_SRP276625	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.62339
PE(20:1(11Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
cerebellar cortex_35 pcw_F_12295	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-3.20599
Perturb_15420_KD_RNF2_SRP116142	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.92111
Perturb_7682_KD_HNRNPK_SRP111756	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.11752
PC(22:0/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-V955-2426-SM-3GAEF	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
ABC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00893
GTEX-RWSA-0005-SM-2XCAO	GTEx Tissue Sample Gene Expression Profiles	1.0	0.892174
supramarginal gyrus, left, inferior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.875689
PC(20:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-RVPU-0011-R10A-SM-2XCAH	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(20:3(8Z,11Z,14Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_13114_KO_Foxm1_SRP194062	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-16.7169
PC(22:5(4Z,7Z,10Z,13Z,16Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(P-16:0/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PML	ENCODE Transcription Factor Targets	1.0	null
PC(18:1(11Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:1(13Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.078
microglia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.621831
PE(20:5(5Z,8Z,11Z,14Z,17Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
PE(16:1(9Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:5(5Z,8Z,11Z,14Z,17Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_493_KO_RN7SK_SRP367813	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
PC(14:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:1(11Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_2435_KD_TSHZ3_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.16169
GSE111102,GSE111105_3_v_5_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(20:5(5Z,8Z,11Z,14Z,17Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
lateral (dentate) cerebellar nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01505
GTEX-Q2AG-2826-SM-2HMJQ	GTEx Tissue Sample Gene Expression Profiles	1.0	0.962901
cytoplasmic membrane-bounded vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.190495
DDX27	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.76455
Perturb_15561_KO_SLFN11_SRP327912	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	9.27863
Lung adenocarcinoma_LUAD_TCGA-05-4249-01A-01R-1107-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SIN3A	ENCODE Transcription Factor Targets	1.0	null
GSE123105,GSE124556_0_v_2_pcf11_human	RummaGEO Gene Perturbation Signatures	1.0	null
PC(20:0/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Paramedian lobule	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.59289
PC(20:3(5Z,8Z,11Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
corpus callosum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.699853
POLR2A_bone marrow macrophage_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(24:0/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
layer 1 of PrS	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.30672
ventrolateral part of m2A	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.18721
H3K4me3_HL-60_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
inositol phosphate metabolic process	GO Biological Process Annotations 2015	1.0	null
PC(o-20:1(11Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Rhabdomere microvillus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.176
ARHGEF35	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.28593
GTEX-XBED-0926-SM-48TCE	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Infralimbic area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.30458
COLO680N	CCLE Cell Line Gene CNV Profiles	1.0	1.61722
Perturb_1370_KD_IGF2BP1_SRP252209	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	12.0838
GSE200673,GSE200691_1_v_4_hmga2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:2(13Z,16Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(11Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
GSE110178_4_v_7_tranylcypromine_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE89767_7_v_5_cebpa_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GTEX-RU72-0011-R9A-SM-2TF67	GTEx Tissue Sample Gene Expression Profiles	1.0	1.10458
intermediate stratum of m1Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.12933
PMC10247733-41408_2023_863_MOESM4_ESM.pdf-591-ZNF774_ZNF774	Rummagene Transcription Factor Associations 2026	1.0	null
PE(16:1(9Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PMC11850725-41598_2025_90817_MOESM2_ESM.xlsx-Table6-Supplementary_Tables_6_Differentially_expressed_genes_between_the_POU2F2_B_cells_group_and_the_POU2F2-_B_cells_group_in_NSCLC_GSE139555_POU2F2	Rummagene Transcription Factor Associations 2026	1.0	null
GSE130383_2_v_0_gps2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ITPR3	Pathway Commons Protein-Protein Interactions	1.0	null
GSE110178_1_v_3_tranylcypromine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GSE228413_0_v_1_mavs_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(18:3(6Z,9Z,12Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4640-01A-02R-1325-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-A6AS-01A-11R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_7924_KD_RBM7_SRP222099	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.86331
PC(22:2(13Z,16Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:1(13Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-REY6-0426-SM-2TF5G	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(18:1(9Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
cytoplasm	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
PE(18:2(9Z,12Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_16980_KO_CD248_SRP402549	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.40145
paracentral lobule, anterior part, left, inferior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.858295
PE(P-18:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
TRIM71	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.16946
PC(14:0/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(11Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-5672-01A-11R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cuneate nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.1932
PE(P-16:0/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:2(13Z,16Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
RBPJ-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
PC(o-16:1(9Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PMC12517359-iovs-66-13-19_s003.xlsx-Supplementary_Table_S2-Differential_gene_expression_in_ERM_macrophages_ETV5	Rummagene Transcription Factor Associations 2026	1.0	null
PC(24:1(15Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
IRF1	ENCODE Transcription Factor Targets	1.0	null
PE(20:1(11Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-S4Q7-0226-SM-4AD5O	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GSE185519_6_v_0_gilteritinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
SZ in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.03444
PC(22:1(13Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE154767_2_v_0_adam10_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(o-16:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:1(11Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:2(11Z,14Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:1(11Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
H3K4me1_spleen_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
bone inflammation disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.38111
TAL1_MEL cell line_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
USP10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.64226
TE-9	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Perturb_9313_KD_HOTAIR_SRP378143	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	18.0458
AD-51-SS86_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	-1.0	-0.207929
ZNF180_02_177	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	2.58496
PC(20:1(11Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
H3K4me3_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
GTEX-X4XY-1726-SM-46MVO	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.859953
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:5(5Z,8Z,11Z,14Z,17Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:2(11Z,14Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
H3K4me3_G1E_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
PE(14:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_1745_KO_Tet2/Tet3_SRP063091	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	20.0
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.969614
Perturb_1371_KD_IGF2BP2_SRP252209	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.42774
PC(P-18:1(9Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
SKM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36648
PC(P-16:0/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
orbital frontal cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.12201
Perturb_13603_KD_KLF4_SRP221596	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-11.8945
PE(22:0/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_3376_KO_Kat6a_SRP081081	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	9.94718
PC(22:0/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
dorsolateral prefrontal cortex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.14057
PC(20:0/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(9Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Autosomal dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.072
PE(20:2(11Z,14Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:1(13Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
JUN_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE113106_3_v_5_dnm2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE102598_1_v_2_nmda_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PC(P-18:1(11Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PMC11383936-41598_2024_71738_MOESM6_ESM.xlsx-DEPs_LMS_vs_HC-Unnamed_4_TP63	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-S4Z8-0008-SM-33HAZ	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.828287
PE(20:4(8Z,11Z,14Z,17Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:1(11Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(11Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
Erythroid progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.573
GSE116810_2_v_4_selinexor_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Perturb_2066_KD_BMAL1_SRP041298	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.47344
GSU	DepMap CRISPR Gene Dependency	1.0	3.5261
Malignant Tumor Of Colon	DisGeNET Gene-Disease Associations	1.0	null
PC(24:1(15Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
MAFK_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1143	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
GTEX-TKQ1-0003-SM-3NMAE	GTEx Tissue Sample Gene Expression Profiles	1.0	0.914467
H3K79me2_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CBX3_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(16:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
lateral tuberal nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.44999
PC(18:4(6Z,9Z,12Z,15Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-NL3H-0011-R5a-SM-2I3GB	GTEx Tissue Sample Gene Expression Profiles	1.0	1.02571
GTEX-WZTO-0006-SM-3NM9T	GTEx Tissue Sample Gene Expression Profiles	1.0	1.17357
Perturb_14805_KO_Septin2_SRP398422	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	20.0
PE(15:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
HS888T	CCLE Cell Line Gene Expression Profiles	-1.0	-1.70776
GSE155305_3_v_0_ifitm3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(14:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.65557
GTEX-W5WG-0002-SM-3NMDN	GTEx Tissue Sample Gene Expression Profiles	1.0	1.17522
PC(18:2(9Z,12Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
ZMIZ1	ENCODE Transcription Factor Targets	1.0	null
GSE248858_6_v_3_tcpobop_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
ZR7530	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	2.3371
Bed nuclei of the stria terminalis, anterior division, oval nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.13282
ventricular (matrix) zone of pons	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.10247
Lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.3
PE(20:3(5Z,8Z,11Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
PC(24:1(15Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE119978,GSE180930_2_v_7_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
MHHCALL3	CCLE Cell Line Gene Expression Profiles	1.0	1.42266
GSE157635_1_v_0_trem2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(15:0/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
DMS79	CCLE Cell Line Gene CNV Profiles	1.0	1.54733
PE(22:1(13Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(8Z,11Z,14Z,17Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
decreased NK T cell number	MGI Mouse Phenotype Associations 2023	1.0	null
H3K4me2_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
small molecule metabolic process	GO Biological Process Annotations 2015	1.0	null
lymphnode	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.07371
GTEX-QLQ7-1726-SM-2S1QQ	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.843754
19036130-TableS1a	GeneSigDB Published Gene Signatures	1.0	null
PMC11328671-jitc-12-4-s003.pdf-314-PLAGL2_PLAGL2	Rummagene Transcription Factor Associations 2026	1.0	null
MYD88_Deficiency_GDS2650_652_mouse_LUNG	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.869959
Perturb_13896_KO_TLR3/MYD88_SRP332441	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.50724
phosphoric diester hydrolase activity	GO Molecular Function Annotations 2023	1.0	null
GSE126777_0_v_1_otub1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
EBF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.9111
Paramedian lobule, molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.48658
PE(14:0/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
ETV7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5803
inner SZ in midlateral extrastriate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.64623
GSE151612_0_v_8_pracinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Tou	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.574
PE(22:2(13Z,16Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-XPT6-0001-SM-4B64G	GTEx Tissue Sample Gene Expression Profiles	1.0	0.874656
PC(18:2(9Z,12Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
NFIC::TLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5
GTEX-WFG7-2226-SM-3GIKP	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GTEX-X638-0426-SM-47JY2	GTEx Tissue Sample Gene Expression Profiles	1.0	1.18355
GTEX-XQ8I-1726-SM-4BOQB	GTEx Tissue Sample Gene Expression Profiles	1.0	1.41144
Perturb_2556_KO_TET2_SRP163132	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.57847
Bed nuclei of the stria terminalis, anterior division, rhomboid nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.0489
H3K4me1_bone marrow_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
GATA1-19941827-MEL-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
PC(20:3(5Z,8Z,11Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2RN-01A-12R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(18:1(11Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
PE(15:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
GSE211955_1_v_0_jmjd4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:4(7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_1095_KO_ATXN1L_SRP230198	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.8646
Perturb_12315_KO_AGO1_SRP136692	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
IZ in caudal midinferior temporal cortex (area TF)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.09296
GTEX-N7MT-1226-SM-2D7W4	GTEx Tissue Sample Gene Expression Profiles	1.0	0.843017
MTA3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-PWO3-0011-R8A-SM-2I5GD	GTEx Tissue Sample Gene Expression Profiles	1.0	1.27764
PC(24:1(15Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:0/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
GSE88819_0_v_4_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE114992,GSE114993_0_v_5_irf5_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(18:3(9Z,12Z,15Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
stratum pyramidale of rostral CA3	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.959618
PC(22:5(7Z,10Z,13Z,16Z,19Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
MLXIP_01_92	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	1.51976
PE(16:1(9Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
CTCF_MEL cell line_mm9_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(15:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GSE111102,GSE111105_4_v_0_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(22:2(13Z,16Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:0/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:0/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(9Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
occipital pole, left, lateral aspect	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.56093
cytoplasmic part	GO Cellular Component Annotations 2015	1.0	null
Perturb_14631_KD_MSI1/MSI2_SRP067129	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-9.89038
MAX_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
increased IgA level	MGI Mouse Phenotype Associations 2023	1.0	null
anterior (rostral) cingulate (medial prefrontal) cortex_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.92043
CHP212	CCLE Cell Line Gene Expression Profiles	-1.0	-2.29978
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
PC(14:0/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
TAF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84805
GTEX-XUYS-0005-SM-47JZ2	GTEx Tissue Sample Gene Expression Profiles	1.0	1.55495
BFTC905	CCLE Cell Line Gene CNV Profiles	1.0	1.32801
H3K9me3_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
t62-spleen_consensus	MoTrPAC Rat Endurance Exercise Training	1.0	1.55123
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2541
Nr1h4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.6119
primary motor cortex (area M1, area 4)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.21039
POLR2A	ENCODE Transcription Factor Targets	1.0	null
PE(24:0/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Acrodermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.126
PE(22:5(4Z,7Z,10Z,13Z,16Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:1(11Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PMC12634441-41375_2025_2771_MOESM8_ESM.xlsx-ATACseq-Table_S3_Bulk_ATAC-seq_GATA2_vs_control_Only_p-adj_0_05_GATA2	Rummagene Transcription Factor Associations 2026	1.0	null
Perturb_9328_OE_PIK3CA_SRP158425	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.63794
GTEX-RVPV-0011-R11A-SM-2TF6F	GTEx Tissue Sample Gene Expression Profiles	1.0	1.02439
Necrosis	CTD Gene-Disease Associations	1.0	1.7568
PE(22:1(13Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
NFATC1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(20:2(11Z,14Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(9Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
striatum_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.14411
GSE199189_1_v_0_creld2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Primary somatosensory area, upper limb, layer 4	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.36227
GSE82032_3_v_1_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
PC(22:4(7Z,10Z,13Z,16Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
BHLHE40_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
single-organism catabolic process	GO Biological Process Annotations 2015	1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
H3K9me3_IMR90	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
GTEX-T6MO-0003-SM-3NMAG	GTEx Tissue Sample Gene Expression Profiles	1.0	2.73885
PE(18:1(9Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
GSE88819_0_v_2_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
MYOG	ENCODE Transcription Factor Targets	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A3IU-01A-11R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ventrolateral prefrontal cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	0.871785
zona incerta, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.989967
GTEX-W5X1-0006-SM-3GIJZ	GTEx Tissue Sample Gene Expression Profiles	1.0	1.1301
PE(20:4(8Z,11Z,14Z,17Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(8Z,11Z,14Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-16:0/16:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_17421_KO|Mut_Suz12/Jak3_SRP168570	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	20.0
Perturb_7888_Mut_RPB6_SRP305464	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.49879
H3K9me3_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
POU2F2	ENCODE Transcription Factor Targets	1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-S9-A6U8-01A-21R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CTCF_WERI-Rb-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(22:0/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Ethanolamine	MW Enzyme Metabolite Associations	1.0	null
Thymus-b cell	Tabula Sapiens Gene-Cell Associations	1.0	3.54648
ZDHHC20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.94004
OB olfactory fiber layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.61261
cytoplasmic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044039
GTEX-NPJ8-0226-SM-48TBN	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.875177
PE(22:1(13Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
GSE208254_3_v_1_irf8_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GTEX-XMD1-0011-R3B-SM-4AT5R	GTEx Tissue Sample Gene Expression Profiles	1.0	0.975948
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
PE(22:4(7Z,10Z,13Z,16Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_920_KO_S100A8_SRP293956	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.4805
Autoimmune disease of the nervous system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.086
GSE110178_5_v_7_tranylcypromine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GTEX-PX3G-1626-SM-2S1PT	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
POU5F1-18347094-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
t66-lung_female_4w	MoTrPAC Rat Endurance Exercise Training	-1.0	-3.11595
Perturb_9713_KO_Miwi/Mili/Miwi2_SRP036148	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	5.56795
SOX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.4767
H3K4me3_megakaryocyte_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
GTEX-QESD-0526-SM-2I5G5	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Spleen-memory b cell	Tabula Sapiens Gene-Cell Associations	1.0	4.82103
SUM 52PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02034
PMC9894241-pnas.2211429119.sd05.xlsx-G2_REST-Dataset_S6_Differentially_expressed_genes_in_G1-G8_REST	Rummagene Transcription Factor Associations 2026	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
orbital frontal cortex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.91644
Perturb_16364_KO_Cryab/Hspb2_SRP055864	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	2.99407
GSE110440_2_v_0_rad21_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE116810_2_v_1_selinexor_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PE(P-16:0/14:0)	HMDB Metabolites of Enzymes	1.0	null
Rheumatoid arthritis	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.5699
ZNF879	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.26692
substantia nigra, pars reticulata, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.855847
GSE95077_5_v_0_amiloride_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-4862-01A-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-LP-A4AV-01A-11R-A32Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE228263_0_v_1_elesclomol_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Prenatal Exposure Delayed Effects	CTD Gene-Disease Associations	1.0	1.3682
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05054
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
VZ in midlateral extrastriate cortex (area 19)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.934271
PC(15:0/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
IZ in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.26823
cellular lipid metabolic process	GO Biological Process Annotations 2015	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-A5R5-01A-11R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(20:3(8Z,11Z,14Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_14763_KD_LATS1/LATS2_SRP345234	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-8.74807
PC(P-18:1(9Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_2781_KD_HECTD1_SRP109301	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
GTEX-WHSE-0926-SM-3NMBS	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(20:4(8Z,11Z,14Z,17Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
TP63	JASPAR Predicted Transcription Factor Targets	1.0	null
Myeloid dendritic cell 1_Bronchial vessel_Human	CellMarker Gene-Cell Type Associations	1.0	null
PC(16:1(9Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
MOLT-13	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PC(20:3(5Z,8Z,11Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
esophagus	HPA Tissue Protein Expression Profiles	1.0	0.742911
Perturb_15454_KD_CITED2_SRP158979	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	13.7053
GSE200352_10_v_8_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_8717_KO_DHRS4AS1_SRP370273	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
SNU489	CCLE Cell Line Gene CNV Profiles	-1.0	-2.21664
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053111
Brain Lower Grade Glioma_LGG_TCGA-E1-5303-01A-01R-1470-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
rheumatoid arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.510344
PE(20:2(11Z,14Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
GSE123825_2_v_3_glutamine_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
MYF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1986
PC(22:5(7Z,10Z,13Z,16Z,19Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(14:0/16:0)	HMDB Metabolites of Enzymes	1.0	null
medial parabrachial nucleus,right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.831518
PE(20:5(5Z,8Z,11Z,14Z,17Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
amygdaloid complex_26 pcw_F_12949	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.07941
PC(20:2(11Z,14Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_7670_KD_HNRNPK_SRP111756	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.57395
Perturb_13599_KO_HDGFL2_SRP153901	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.90012
PMC8759131-advancesADV2021004469-suppl2.xlsx-Table_S1-Supplementary_Table_1_Differentially_expressed_genes_post_knockout_of_MEF2D_in_MOLM-13_AML_cells_MEF2D	Rummagene Transcription Factor Associations 2026	1.0	null
H3K4me1_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PC(P-18:1(11Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE102505_6_v_2_tunicamycin_human	RummaGEO Drug Perturbation Signatures	1.0	null
external carotid artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.38917
PE(20:2(11Z,14Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GSE134693_0_v_1_msr1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
MM485	DepMap CRISPR Gene Dependency	1.0	2.39026
PC(20:4(5Z,8Z,11Z,14Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
GSE154074_2_v_4_bleomycin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PC(o-18:1(9Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
lipid biosynthetic process	GO Biological Process Annotations 2015	1.0	null
Systemic scleroderma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.001
Perturb_12574_KO_NOTCH1_SRP143456	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.86081
PMC5575985-mp2016192x3.xlsx-ST12-Unnamed_1_KLF6	Rummagene Transcription Factor Associations 2026	1.0	null
GSE113734_1_v_0_qprt_human	RummaGEO Gene Perturbation Signatures	1.0	null
soft tissue	HPA Tissue Protein Expression Profiles	-1.0	-0.828192
PE(22:1(13Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-RNOR-0526-SM-2TF4O	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(22:0/24:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-XK95-0426-SM-4AT4R	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
posteromedial visual area, layer 4	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.04772
GSE147662_0_v_1_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PC(20:1(11Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_510_KO_RNASEL_SRP173964	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.87974
PAX5	ENCODE Transcription Factor Targets	1.0	null
PC(18:1(9Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(9Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(o-18:1(9Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
H3K27ac_cortical plate_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
PC(o-22:1(13Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_12359_KD_SF3A1_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.14975
PC(20:4(5Z,8Z,11Z,14Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_1290_KO_Lef1_SRP111197	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	2.8551
connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.595233
single-organism biosynthetic process	GO Biological Process Annotations 2015	1.0	null
GSE231648_0_v_3_lsm14b_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-7315-01A-31R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_15460_KD_CSN5_SRP316687	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.12038
Perturb_15560_KO_SLFN11_SRP327912	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	6.6593
PC(18:3(6Z,9Z,12Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-NL3H-0011-R2a-SM-2I3GG	GTEx Tissue Sample Gene Expression Profiles	1.0	0.867214
PC(18:3(6Z,9Z,12Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-X8HC-0526-SM-4E3JA	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
SKMEL1	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21048
PE(24:1(15Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Alzheimer's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.389
TBXT	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0011
PE(18:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(15:0/24:0)	HMDB Metabolites of Enzymes	1.0	null
catabolic process	GO Biological Process Annotations 2015	1.0	null
glycerophospholipid biosynthetic process	GO Biological Process Annotations 2015	1.0	null
Perturb_2758_KD_PRMT1_SRP214436	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.60884
PC(18:1(11Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-Y8-A896-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POU5F1-18692474-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
OVKATE	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Perturb_9361_KO_CDKN2A_SRP158425	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.95229
Immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.72
PC(18:2(9Z,12Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:2(11Z,14Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PMC10709088-mmc2.xlsx-Sheet1-Table_S2_Potential_GR_and_MR_target_genes_identified_from_the_set_of_495_male_and_female_GRMREmx1-cre_common_gene_changes_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
hyperactivity	MGI Mouse Phenotype Associations 2023	1.0	null
Perturb_8851_KD_MLKL_SRP165226	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.13388
PC(14:1(9Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
GSE73562,GSE73563_1_v_2_preb_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Nephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.071
GTEX-XYKS-0008-SM-4BRW6	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(18:1(11Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.840101
GSE107505_3_v_2_nanog_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
lymphnode_5c	HPA Tissue Sample Gene Expression Profiles	1.0	0.927823
PC(P-18:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14324_KD_EIF5A2_SRP294329	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.54289
GTEX-SUCS-0008-SM-4DM53	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Postsubiculum, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.22143
mediodorsal nucleus of thalamus_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.96876
GTEX-WEY5-0426-SM-3GIKT	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
BCL11A	ENCODE Transcription Factor Targets	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.4437
Minor Salivary Gland	GTEx Tissue Gene Expression Profiles 2023	1.0	1.84391
PC(22:2(13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Human - Lung v2 (HLCA) - L4 - Plasmacytoid DCs	HuBMAP Azimuth Cell Type Annotations	1.0	null
Lung adenocarcinoma_LUAD_TCGA-55-7281-01A-11R-2039-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_2917_KD_FOXO3_SRP325840	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-12.7881
PC(20:1(11Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-VUSH-0004-SM-3P61T	GTEx Tissue Sample Gene Expression Profiles	1.0	0.943434
PE(20:3(5Z,8Z,11Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:0/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_7922_OE_KMT2B_SRP388452	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.49119
PE(22:0/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(6Z,9Z,12Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
YY1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:4(7Z,10Z,13Z,16Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
IgD B cell receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.633
L1CAM	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12821
anterior (rostral) cingulate (medial prefrontal) cortex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-2.54522
Brain Lower Grade Glioma_LGG_TCGA-WY-A858-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(20:1(11Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-OHPN-0011-R5A-SM-2I5FF	GTEx Tissue Sample Gene Expression Profiles	1.0	0.871142
PE(18:3(6Z,9Z,12Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
Innate Immune System	Reactome Pathways 2024	1.0	null
GTEX-QV44-0008-SM-447AX	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
H3K4me3_heart_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
striatum_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.10364
Liver Cirrhosis, Experimental	DisGeNET Gene-Disease Associations	1.0	null
layer II of rostral entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.974809
GSE144443_5_v_6_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PE(18:2(9Z,12Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_7927_KD_ZFC3H1_SRP222099	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.77403
PMC8724844-bt-30-1-98-supple2.xlsx-GO_BP-SP1_SP1	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-SUCS-0002-SM-3NMAJ	GTEx Tissue Sample Gene Expression Profiles	1.0	1.61582
PE(16:0/16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(15:0/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
PC(16:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-XBEW-0008-SM-4AT3Y	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.848009
PE(18:1(9Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
hsa-miR-335-5p	MiRTarBase microRNA Targets	1.0	null
Perturb_14314_KO_PDE10A_SRP300922	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.32666
PE(18:0/16:0)	HMDB Metabolites of Enzymes	1.0	null
substantia nigra, pars compacta, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.08171
Perturb_15457_KO_GPRC5A_SRP165862	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.03964
single-stranded DNA exodeoxyribonuclease activity	GO Molecular Function Annotations 2025	1.0	null
Paragigantocellular reticular nucleus, lateral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.35944
Perturb_8921_KD_ARID1A_SRP192519	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.17419
Pyramus (VIII), molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.60933
ELF1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(14:0/24:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
involvement	GeneRIF Biological Term Annotations	1.0	null
TFAP2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	129.256
PE(18:3(9Z,12Z,15Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-UPJH-0526-SM-4IHK8	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(16:1(9Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_3915_KD_CTNNB1_DRP003300	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.58385
PC(18:1(11Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_9696_KO_GPNMB_SRP382180	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.7842
PE(18:1(11Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
TGM2_KD_GSE23702_715_human_NB4 cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
PC(20:1(11Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
inferolateral temporal cortex (area TEv, area 20)_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-0.991129
increased IgG3 level	MGI Mouse Phenotype Associations 2023	1.0	null
layer 1 of InsCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.50974
GTEX-WOFM-1326-SM-3MJFR	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.966655
Basement membrane collagen trimer	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.756
Perturb_7949_Mut_BAZ1A_SRP100570	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.14033
PC(18:3(6Z,9Z,12Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(11Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
superficial stratum of CoPV	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.06801
NFIC_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ILF2_02_70	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.60293
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15296
GSE230329_0_v_3_dextran_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PC(24:1(15Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:1(11Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
NELFE_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(18:0/14:0)	HMDB Metabolites of Enzymes	1.0	null
STAT5A_02_182	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	5.52356
GTEX-SNOS-1526-SM-32PLW	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(18:1(9Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-OXRN-1326-SM-3LK5V	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
mediodorsal nucleus of thalamus_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.52846
SPI1	ENCODE Transcription Factor Targets	1.0	null
GTEX-Q2AG-0011-R9A-SM-2HMJ6	GTEx Tissue Sample Gene Expression Profiles	1.0	0.872106
PE(18:3(9Z,12Z,15Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_15557_KO_SLFN11_SRP327912	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.17291
MAX_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(20:3(8Z,11Z,14Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:4(7Z,10Z,13Z,16Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-WL46-0011-R7A-SM-3LK7X	GTEx Tissue Sample Gene Expression Profiles	1.0	0.842446
PC(22:4(7Z,10Z,13Z,16Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
Folium-tuber vermis (VII), molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.75942
GSE160304,GSE163392_4_v_3_zswim8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GTEX-VUSG-0003-SM-3NMDK	GTEx Tissue Sample Gene Expression Profiles	1.0	1.77893
GSE223008_6_v_8_calhm6_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-XLM4-0008-SM-4AT4W	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Rheumatoid arthritis	GWAS Catalog SNP-Phenotype Associations	1.0	0.802698
Perturb_2720_KD_YAP1/WWTR1_SRP115100	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.15402
H3K27me3_mammary epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PMC7359798__F3	PFOCR Pathway Figure Associations 2024	1.0	null
PC(16:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-WEY5-2126-SM-3GILK	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.891121
Perturb_411_KO_PAF1_ERP136917	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.72956
Perturb_15022_KD_RelA_SRP078053	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-7.23962
phospholipid biosynthetic process	GO Biological Process Annotations 2015	1.0	null
PE(16:1(9Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(8Z,11Z,14Z,17Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
intermediate part of the arcuate nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.79041
Ovary	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.80865
CTCF	ENCODE Transcription Factor Targets	1.0	null
PC(dm18:1(11Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PE(14:0/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
organelle membrane	GO Cellular Component Annotations 2015	1.0	null
GSE203655_0_v_1_stat1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE161184_0_v_1_tlr7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
lysosome	LOCATE Predicted Protein Localization Annotations	1.0	null
Perturb_1431_KO_Prmt7_SRP362551	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	6.38247
Amoeboid microglia	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.812
Bladder Urothelial Carcinoma_BLCA_TCGA-GC-A3WC-01A-31R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE157960_2_v_3_progesterone_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
HDAC2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064847
GSE154074_1_v_0_bleomycin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PE(16:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
H3K9ac_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
mantle zone of m2ADL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.23972
Perturb_5622_KD_KLF5_SRP307776	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-6.3218
PC(24:1(15Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-XUW1-0826-SM-4BOP6	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.85493
GSE102505_1_v_0_tunicamycin_human	RummaGEO Drug Perturbation Signatures	1.0	null
PE(22:1(13Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
organelle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.047402
GTEX-WRHU-0006-SM-3MJF6	GTEx Tissue Sample Gene Expression Profiles	1.0	0.945739
STAT1_01_21	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	0.8425
Prostate adenocarcinoma_PRAD_TCGA-J4-A67R-01A-21R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(18:2(9Z,12Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:2(11Z,14Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:0/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.548
PE(14:0/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:2(9Z,12Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_8716_KO_DHRS4AS1_SRP370273	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
Perturb_380_KD_TOP1_SRP295687	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.17245
PE(18:2(9Z,12Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
posteromedial visual area, layer 5	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.02178
MDAMB157	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.70272
Liver hepatocellular carcinoma_LIHC_TCGA-ED-A82E-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE149903_0_v_2_myd88_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(16:1(9Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-16:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(o-18:0/24:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_11518_KD_TP63_SRP134235	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
superficial stratum of r2BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08227
biosynthetic process	GO Biological Process Annotations 2015	1.0	null
PE(P-18:0/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-DB-A75O-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
membrane region	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.007697
ChIP_NANOG_18347094	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
sublayer 6a of PCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.04302
FOXM1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Prdm4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.2269
PE(14:1(9Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_12655_KD_Yap1/Wwtr1_SRP212072	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-20.0
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(11Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
KMS-28BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles	1.0	null
Dhori Virus_24Hour_20090954_GSE17400	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.21256
GSE131798,GSE131804_2_v_0_igf1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
cortex of cerebellar hemisphere	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.05409
PE(20:5(5Z,8Z,11Z,14Z,17Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:3(8Z,11Z,14Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-RVPU-2326-SM-2TF6R	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Kidney renal papillary cell carcinoma_KIRP_TCGA-DW-7841-01A-11R-A32Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_382_KD_TOP1_SRP295687	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	7.857
SCC4	CCLE Cell Line Gene CNV Profiles	1.0	1.8805
PMC11982601-IMM-175-84-s005.xlsx-Fig5D_LPS-Innate_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
PE(15:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(24:1(15Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
abnormal skin adnexa morphology	MPO Gene-Phenotype Associations	1.0	null
periventricular stratum of Hb	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.31264
GSE160373_1_v_2_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE137144_3_v_0_nlrp3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(24:1(15Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
Skeletal Muscle Male	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	1.0	1.8591
GTEX-PVOW-0006-SM-3NMB8	GTEx Tissue Sample Gene Expression Profiles	1.0	1.71654
Perturb_4349_KO_Jag1_SRP045701	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-13.282
MYC_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(22:0/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
POLR2AphosphoS5_HL-60_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JARID1B-DAIN-22020125-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
H3K9me3_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
IRF4_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH2887	DepMap CRISPR Gene Dependency	1.0	6.50887
SNU840	DepMap CRISPR Gene Dependency	1.0	3.52588
GSE117042_0_v_3_tunicamycin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC8379183-41467_2021_25326_MOESM9_ESM.xlsx-SALL4_unique_peaks-Unnamed_14_SALL4	Rummagene Transcription Factor Associations 2026	1.0	null
H3K36me3_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.977039
Perturb_6455_KO_GCN2_SRP346390	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.17448
GTEX-REY6-1026-SM-2TF4Y	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(18:4(6Z,9Z,12Z,15Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE185519_6_v_7_gilteritinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.365
PE(22:4(7Z,10Z,13Z,16Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(4Z,7Z,10Z,13Z,16Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
decreased body size	MPO Gene-Phenotype Associations	1.0	null
hippocampus (hippocampal formation)_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.03197
PE(P-18:0/16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_5559_KO_Wdr26_SRP212064	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	1.99902
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-N7MT-0011-R4a-SM-2I3G9	GTEx Tissue Sample Gene Expression Profiles	1.0	1.2344
PE(22:5(7Z,10Z,13Z,16Z,19Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-7821-01A-12R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(18:3(6Z,9Z,12Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Weight Loss	CTD Gene-Disease Associations	1.0	1.63653
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-A4-A6HP-01A-11R-A31O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ELF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.6345
GSE151612_4_v_11_pracinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
H3K4me3_GM12864_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
PC(o-18:1(11Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:2(13Z,16Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE118794_5_v_1_zmynd8_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Perturb_3562_KD_NOTCH3_SRP174604	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-12.9639
GSE118794_0_v_1_zmynd8_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
intrinsic component of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
Brain Lower Grade Glioma_LGG_TCGA-S9-A7R2-01A-21R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(22:4(7Z,10Z,13Z,16Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_14598_KD_E2F1/E2F2/E2F3_SRP252426	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-6.40214
Perturb_15026_KD_KLF11_SRP267336	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-8.32639
PC(18:3(6Z,9Z,12Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
PE(18:3(9Z,12Z,15Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
intermediate stratum of r8BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.43097
GTEX-QDVN-0006-SM-48U1R	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Perturb_439_KD_MEP50_SRP073189	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.22593
RAD21	ENCODE Transcription Factor Targets	1.0	null
PC(24:1(15Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
c2c12	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.26767
H3K4me2_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PE(P-18:1(11Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
Oral mucosa	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
precuneus, right, superior lateral bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.845021
H3K9ac_MEL cell line_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063409
PE(P-16:0e/16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(9Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(11Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE169155_5_v_4_acetaminophen_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Perturb_6442_KO_RHO_SRP134183	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.13153
hippocampus (hippocampal formation)_8 yrs_M_12981	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.04826
lymphoid tissue	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
primary motor cortex (area M1, area 4)_4 mos_M_12890	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.8577
interpeduncular nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.974964
Phospholipase D/Transphosphatidylase	InterPro Predicted Protein Domain Annotations	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-A4DS-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_11575_OE_YAP_SRP273175	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.99299
CEBPB_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(22:4(7Z,10Z,13Z,16Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_1437_KO_Kmt2c_SRP283007	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	2.8802
PE(P-18:1(11Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A3AE-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
increased IgM level	MGI Mouse Phenotype Associations 2023	1.0	null
PC(16:1(9Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.296972
SKN	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PE(18:1(11Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE179036_1_v_0_trim24_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(15:0/16:0)	HMDB Metabolites of Enzymes	1.0	null
Usher Syndrome	DisGeNET Gene-Disease Associations	1.0	null
PC(18:3(6Z,9Z,12Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_4005_KD_LMNB1_SRP320092	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-13.2905
b-lymphocyte cell line	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
NRF2-31884422-A549-HUMAN-LUNG-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
PE(18:2(9Z,12Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Skin	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PC(20:3(5Z,8Z,11Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
ELF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.46
GTEX-NL4W-0011-R2a-SM-2I5GV	GTEx Tissue Sample Gene Expression Profiles	1.0	1.23376
PE(20:2(11Z,14Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:1(11Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
GSE184884_4_v_1_gps2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(P-18:1(9Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14373_KD_IGF2BP1_SRP150935	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.64011
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-RQ-A68N-01A-11R-A31O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(20:1(11Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PAX5_GM12878_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE92457_9_v_10_ethanol_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Perturb_2389_KD_NSD3_SRP267458	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	8.51139
PC(o-18:2(9Z,12Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE174522_1_v_0_spp1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_6854_KD_AC010789.1_SRP285120	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.08849
PE(20:4(5Z,8Z,11Z,14Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:0/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:1(13Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:2(13Z,16Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
orbital frontal cortex_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.03868
PE(22:5(4Z,7Z,10Z,13Z,16Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
mantle zone of CbH	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.1026
PC(22:4(7Z,10Z,13Z,16Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Endolysosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.729
PC(18:3(6Z,9Z,12Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Lateral reticular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.66585
PE(22:2(13Z,16Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(16:0/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-QV31-1426-SM-2S1QD	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(P-18:0/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Memory Disorders	CTD Gene-Disease Associations	1.0	1.32637
PE(20:4(8Z,11Z,14Z,17Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:0/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE144115_4_v_3_stag2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_14321_KD_CD95L_SRP111532	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	14.0521
GTEX-UTHO-0011-R2A-SM-3GIKC	GTEx Tissue Sample Gene Expression Profiles	1.0	0.906249
Lung adenocarcinoma_LUAD_TCGA-78-8655-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
membrane-bounded vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.201335
TBP_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PMC12370121-pone.0329101.s003.pdf-2-BATF_1_BATF	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-QEG4-0008-SM-48TYZ	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Fcgamma receptor (FCGR) dependent phagocytosis	Reactome Pathways 2014	1.0	null
Fetal Death	CTD Gene-Disease Associations	1.0	1.01625
PE(14:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
PC(14:1(9Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
phagocytic vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.313344
MONOMAC1	CCLE Cell Line Gene Expression Profiles	1.0	1.64491
PE(22:4(7Z,10Z,13Z,16Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-PWO3-0011-R2A-SM-2S1OX	GTEx Tissue Sample Gene Expression Profiles	1.0	1.21001
Perturb_2319_KD_PRPF8_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-12.9663
GSE184087_2_v_1_tert_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(20:1(11Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06848
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052617
Skeletal muscle	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
H3K36me3_H1 Derived Mesenchymal Stem Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
PMC11093744-41592_2024_2172_MOESM3_ESM.xlsx-ELP-genes_NR5A1	Rummagene Transcription Factor Associations 2026	1.0	null
red nucleus, magnocellular part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.25491
PC(P-18:1(9Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
layer VI of area 35c	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.66812
D425	DepMap CRISPR Gene Dependency	1.0	7.69718
Lung adenocarcinoma_LUAD_TCGA-44-6148-01A-11R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-RUSQ-0526-SM-2TF72	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(20:3(5Z,8Z,11Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE221327_5_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(20:5(5Z,8Z,11Z,14Z,17Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
ZNF528	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.60452
Perturb_14611_KO_MTAP_SRP186070	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
phagocytic vesicle	GO Cellular Component Annotations 2023	1.0	null
PE(20:1(11Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(11Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Lateral reticular nucleus, magnocellular part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.69702
PE(16:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
PC(18:2(9Z,12Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(8Z,11Z,14Z,17Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
H3K9me3_fibroblast of lung_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
PC(14:0/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:1(13Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
PE(14:1(9Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_1180_KD_RUNX1_ERP128097	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
GSE154767_4_v_0_adam10_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
NCIH28	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5165
PE(22:5(4Z,7Z,10Z,13Z,16Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
RBPJ	ChEA Transcription Factor Targets	1.0	null
PC(16:1(9Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
BCLAF1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(18:0/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE116810_5_v_0_selinexor_human	RummaGEO Drug Perturbation Signatures	1.0	null
Perturb_414_KO_PAF1_ERP136917	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	5.71816
GSE252857_1_v_3_prednisone_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PC(22:1(13Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
abnormal coat appearance	MPO Gene-Phenotype Associations	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-60-2715-01A-01R-0851-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(18:1(9Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
dorsolateral prefrontal cortex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.905123
habenula (old epithalamus)	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.20109
PC(20:1(11Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
Lung adenocarcinoma_LUAD_TCGA-44-5645-01A-01R-1628-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(18:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
phospholipid metabolic process	GO Biological Process Annotations 2015	1.0	null
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058316
GTEX-X4XX-0011-R11A-SM-46MWQ	GTEx Tissue Sample Gene Expression Profiles	1.0	0.998645
ZNF816	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.0997
GSE111138,GSE111149_1_v_0_runx3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
TE-6	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
PC(22:1(13Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
SUM149PT	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.988189
PC(18:0/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.886242
Head and Neck squamous cell carcinoma_HNSC_TCGA-CQ-A4CA-01A-11R-A24Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-PW2O-0126-SM-48TC8	GTEx Tissue Sample Gene Expression Profiles	1.0	1.01768
PC(24:1(15Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
p1 part of the substantia nigra reticulata	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.14904
PE(20:3(5Z,8Z,11Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2832-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
superior occipital gyrus, right, inferior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.882319
Perturb_2307_KD_DDX3X_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.69083
GSE144443_0_v_6_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Cytoplasmic vesicle lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.046
Primary somatosensory area, trunk	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.44069
Perturb_5728_KO_Cdh1_SRP149531	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	7.23005
CRO-AP2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
H3K4me3_B cell_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
Perturb_14614_KO_MTAP_SRP186070	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
SP in primary visual cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.94977
GTEX-PX3G-0006-SM-33HBQ	GTEx Tissue Sample Gene Expression Profiles	1.0	0.941113
transverse gyri, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.831225
MXI1_02_173	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	3.16993
PE(P-18:1(11Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
SOX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.13963
5'-3' DNA exonuclease activity	GO Molecular Function Annotations 2023	1.0	null
PE(18:3(9Z,12Z,15Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(9Z,12Z,15Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:4(7Z,10Z,13Z,16Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
H3K4me1_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
Perturb_16954_KO_MLX_SRP183152	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.124
MZ in temporal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.978374
PE(P-18:1(11Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
III, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.3095
15474998-tableS1b	GeneSigDB Published Gene Signatures	1.0	null
PE(P-16:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
central gray of the pons, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.44101
PE(18:1(9Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Lung adenocarcinoma_LUAD_TCGA-75-6212-01A-11R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
COR-L47	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.81068
PC(22:0/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:2(11Z,14Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
H3K4me1_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
PE(24:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
connective tissue disease	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	0.009444
POU5F1-18347094-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
GTEX-XMD1-0011-R10A-SM-4AT4A	GTEx Tissue Sample Gene Expression Profiles	1.0	0.968165
intracellular organelle	GO Cellular Component Annotations 2015	1.0	null
Perturb_13693_OE_HEPACAM2_SRP257754	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	5.22309
PMC8987207-DataSheet_1.xls-TF_targets_Fig_2A-E2A_Pre-Pro-B-Cells_ChIP-seq_TCF3	Rummagene Transcription Factor Associations 2026	1.0	null
Perturb_12520_KD_MITF_SRP190868	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-6.38132
GSE201309_5_v_3_matrine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE122101,GSE122103_3_v_1_ssu72_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
anteromedial nucleus of thalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.46898
GTEX-SN8G-0126-SM-32PLI	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(P-18:1(11Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Nape	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.607
Perturb_2350_KD_BNC2_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	9.91765
thyroid_5a	HPA Tissue Sample Gene Expression Profiles	-1.0	-1.1431
Perturb_18443_KD_YAP1/WWTR1/CGAS_SRP303519	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.31326
Musculoskeletal system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.751
PC(P-16:0/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
BHLHE40	ENCODE Transcription Factor Targets	1.0	null
increased circulating CXCL10 level	MGI Mouse Phenotype Associations 2023	1.0	null
PC(24:1(15Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-R55D-0008-SM-48FEV	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Head and Neck squamous cell carcinoma_HNSC_TCGA-CX-7085-01A-21R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K4me3_erythroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.483
PE(22:2(13Z,16Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:4(7Z,10Z,13Z,16Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_2506_KD_NXF1_SRP226431	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.36801
PE(22:5(7Z,10Z,13Z,16Z,19Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
molecular layer of CbVCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.13645
ELF1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-XOT4-0526-SM-4B66O	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
REST_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(14:0/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
medial subdivision of area 10	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.43755
NFYA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.68629
GTEx SmallIntestine 20-29 vs 60-69	GTEx Tissue-Specific Aging Signatures	-1.0	-3.03652
GTEX-R55E-0011-R5A-SM-2TC5N	GTEx Tissue Sample Gene Expression Profiles	1.0	1.2492
PE(22:0/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-X88G-0004-SM-47JZ6	GTEx Tissue Sample Gene Expression Profiles	1.0	1.62724
GSE201217_4_v_1_usf2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_1738_KO_Arid2_SRP300754	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	3.10527
PC(22:5(4Z,7Z,10Z,13Z,16Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Atf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.7051
COV644	CCLE Cell Line Gene CNV Profiles	-1.0	-1.83134
PE(P-18:1(9Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_7823_KD_RNF219_SRP100790	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.80332
septopallidal core nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.17682
PE(18:2(9Z,12Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE223008_5_v_8_calhm6_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(20:3(8Z,11Z,14Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
GSE213228_4_v_5_irak2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Liver Diseases	CTD Gene-Disease Associations	1.0	1.17926
PE(18:3(6Z,9Z,12Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
hematopoietic system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
ventrolateral prefrontal cortex_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.50487
dorsolateral prefrontal cortex_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.933373
IFI30	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.17322
PC(22:4(7Z,10Z,13Z,16Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(24:1(15Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
Parasubiculum, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.218
PE(18:3(6Z,9Z,12Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:0/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_12068_OE_circDOCK1_ERP131190	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.51649
PC(22:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
blood	GTEx Tissue Gene Expression Profiles	1.0	0.896932
MZ in orbital frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.849636
Perturb_15364_KO_Mef2c/Mef2d_SRP064307	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	20.0
PE(22:4(7Z,10Z,13Z,16Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
IRF8-21731497-J774-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
decreased circulating calcium level	IMPC Knockout Mouse Phenotypes	1.0	null
pulp	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.592444
spleen_3a	HPA Tissue Sample Gene Expression Profiles	1.0	0.882089
phospholipase D activity	GO Molecular Function Annotations 2025	1.0	null
Bronchus	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
STAT1	ENCODE Transcription Factor Targets	1.0	null
Gangliosidosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.161
H2AFZ_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(P-16:0/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
H3K4me3_CH12.LX_mm9_5	ENCODE Histone Modification Site Profiles	1.0	null
Perturb_2136_KD_ARVCF_SRP186778	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.91261
pyramidal layer of caudal subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.919189
PC(20:2(11Z,14Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
H3K27ac_spleen_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
GTEX-T6MN-0002-SM-3NMAH	GTEx Tissue Sample Gene Expression Profiles	1.0	1.95809
NFE2L2_01_60	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	2.84217
PC(P-18:1(9Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(11Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.869959
GSE119978,GSE180930_0_v_7_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
PC(18:2(9Z,12Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-P4PQ-1626-SM-2HMKK	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GSE135705_5_v_1_corticosterone_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PE(22:4(7Z,10Z,13Z,16Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
enlarged spleen	MGI Mouse Phenotype Associations 2023	1.0	null
Disease of anatomical entity	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.751
Perturb_9348_KO_CDKN2A_SRP158425	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.56237
PMC4165364-13059_2014_406_MOESM5_ESM.xls-Supp_Dataset_3-SUPPLEMENTARY_DATASET_3_AML3_AzaC_WIMSi_246_RUNX2	Rummagene Transcription Factor Associations 2026	1.0	null
KMS11	CCLE Cell Line Gene Expression Profiles	1.0	1.65517
GSE178255_1_v_4_tlr4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(20:1(11Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-U8XE-0926-SM-3DB8V	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.896532
PC(22:1(13Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
increased anti-nuclear antigen antibody level	MGI Mouse Phenotype Associations 2023	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
E2F1-20622854-HELA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
TE-10	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
NFATC1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(o-22:3(10Z,13Z,16Z)/22:3(10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
B-lymphocyte cell line	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Perturb_6486_KD_PRMT3_SRP370549	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.47754
PE(18:2(9Z,12Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
RI1	DepMap CRISPR Gene Dependency	1.0	4.48921
AR-27623747-22RV1-MOUSE-PROSTATE-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
cytoplasmic vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
PE(20:4(8Z,11Z,14Z,17Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-CH-5792-01A-11R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
IMPDH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.45435
PC(20:3(5Z,8Z,11Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(14:1(9Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(14:1(9Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE231799_2_v_1_nfkbie_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
H3K9me3_fibroblast of lung_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
GSE218580_1_v_2_fentanyl_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PC(22:1(13Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PMC7952454__F3	PFOCR Pathway Figure Associations 2024	1.0	null
GTEX-P78B-1626-SM-2S1O1	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Carcinoma, Hepatocellular_Hepatic Tissue_GSE4612	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.80862
Autosomal recessive disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.194
H3K4me1_megakaryocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
PE(20:1(11Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
cellular_component	GO Cellular Component Annotations 2015	1.0	null
PMC12370121-pone.0329101.s003.pdf-2-BATF_BATF	Rummagene Transcription Factor Associations 2026	1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Perturb_7950_KO_BAZ1A_SRP100570	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.50519
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QT-A5XK-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K4me3_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PC(22:4(7Z,10Z,13Z,16Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
trans-golgi network membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
Perturb_2317_KD_PRPF31_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-10.0867
PC(24:0/24:0)	HMDB Metabolites of Enzymes	1.0	null
Disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.751
integral component of membrane	GO Cellular Component Annotations 2015	1.0	null
PC(P-16:0/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PE(24:1(15Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
ATF2_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(24:0/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(24:1(15Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
inferolateral temporal cortex (area TEv, area 20)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.08486
PC(22:4(7Z,10Z,13Z,16Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
JM1	CCLE Cell Line Gene Expression Profiles	1.0	1.50215
PC(22:2(13Z,16Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-N7MT-0011-R2a-SM-2I3GI	GTEx Tissue Sample Gene Expression Profiles	1.0	1.28631
superficial stratum of r9BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.21746
PC(22:0/16:0)	HMDB Metabolites of Enzymes	1.0	null
caudal presubiculum (postsubiculum)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.50567
GTEX-X585-0011-R2B-SM-46MVF	GTEx Tissue Sample Gene Expression Profiles	1.0	1.67654
PC(20:2(11Z,14Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:0/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
DOTC2-4510	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GTEX-XOT4-1126-SM-4B66E	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.913525
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.883569
abnormal body size	MPO Gene-Phenotype Associations	1.0	null
GTEX-WYVS-0526-SM-3NM9W	GTEx Tissue Sample Gene Expression Profiles	1.0	0.930063
PE(20:4(5Z,8Z,11Z,14Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-WEY5-0008-SM-4LMKC	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.827848
PC(22:2(13Z,16Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
Synthesis of PG	Reactome Pathways 2024	1.0	null
ZNF341	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5906
Inferior olivary complex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.93325
PE(22:2(13Z,16Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-43-2581-01A-01R-0851-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE92434_1_v_0_ebf1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(18:2(9Z,12Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(15:0/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
IRF1_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_spleen_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.131
PC(18:1(9Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
MZ in caudal cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.517
PC(16:0/24:0)	HMDB Metabolites of Enzymes	1.0	null
PE(15:0/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
ELF1	ENCODE Transcription Factor Targets	1.0	null
GTEX-QVUS-0011-R4A-SM-3GAE7	GTEx Tissue Sample Gene Expression Profiles	1.0	0.942405
hippocampus (hippocampal formation)_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.859282
Perturb_7646_KD_METTL3_SRP154311	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.47687
PE(P-18:1(9Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-16:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:1(13Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
POU2F2_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-UJHI-1726-SM-3DB9B	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
H3K4me3_GM12878_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
PC(P-18:0/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PMC5927328-NIHMS77085-supplement-Table_S4.xlsx-Table_S4A_LPS_induced_genes_GO-Unnamed_16_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
H3K27me3_erythroblast_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Lung adenocarcinoma_LUAD_TCGA-91-6835-01A-11R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE210885_5_v_4_klf4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041657
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.953818
GTEX-UTHO-2926-SM-3P5Z9	GTEx Tissue Sample Gene Expression Profiles	1.0	1.14809
PC(24:0/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:0/16:0)	HMDB Metabolites of Enzymes	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-60-2720-01A-01R-0851-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Retrosplenial area, lateral agranular part, layer 6b	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.0181
PE(P-16:0/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-W5X1-0826-SM-3GILN	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(P-18:1(9Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(9Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Prospore membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.592
GTEX-XXEK-0126-SM-4BRVU	GTEx Tissue Sample Gene Expression Profiles	1.0	1.4402
PE(22:4(7Z,10Z,13Z,16Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(16:1(9Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053722
Perturb_755_KD_ZFR_SRP107875	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.89339
Liver	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Perturb_7743_KD_RRP6/DIS3_SRP337423	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.8657
PE(20:3(5Z,8Z,11Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(dm18:1(9Z)/dm18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(6Z,9Z,12Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
SP in perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.836526
spleen_3d	HPA Tissue Sample Gene Expression Profiles	1.0	0.913829
Kidney renal clear cell carcinoma_KIRC_TCGA-A3-A8OU-01A-11R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(22:2(13Z,16Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
GSE169152_3_v_4_ibrutinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
PE(15:0/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
REC1	CCLE Cell Line Gene Expression Profiles	1.0	1.78031
SKM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:1(11Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:3(5Z,8Z,11Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
POLR2AphosphoS5_GM12891_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SP1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(22:5(4Z,7Z,10Z,13Z,16Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
PE(14:0/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
ETV6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7715
PC(20:5(5Z,8Z,11Z,14Z,17Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Dendritic cell_Peripheral blood_Human	CellMarker Gene-Cell Type Associations	1.0	null
sublayer 6b of PCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.15252
GSE176008_0_v_1_azacitidine_human	RummaGEO Drug Perturbation Signatures	1.0	null
H3K4me3_bone marrow macrophage_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
PC(P-16:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_11996_KO_Endov_SRP316594	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	11.3838
Lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.27
OCIAML2	CCLE Cell Line Gene Expression Profiles	1.0	1.76028
posterior (caudal) superior temporal cortex (area 22c)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.837658
CDAN1_02_197	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	4.64386
GSE95077_5_v_3_amiloride_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PE(16:0/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
anterior (rostral) cingulate (medial prefrontal) cortex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.80171
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:0/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(9Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(14:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
primary auditory cortex (core)_8 yrs_M_12981	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.96318
PC(18:3(9Z,12Z,15Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_14050_OE_NFIB_SRP281947	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
Perturb_6736_KO_NORAD_SRP066895	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.71957
orbital frontal cortex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.48784
Perturb_11347_KO_Hdac3_SRP360955	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	5.05648
skeletal muscle	HPA Tissue Protein Expression Profiles	1.0	0.742911
GTEX-X4XY-0626-SM-4E3IN	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Perturb_3792_KD_MYC_SRP057613	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
GSE246195,GSE246305_4_v_5_sin3a_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE203158_12_v_14_aire_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-PWN1-0226-SM-2S1OZ	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.883569
PC(20:2(11Z,14Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_1120_KD_CCND3_SRP325057	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.82286
PE(20:3(5Z,8Z,11Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
PE(P-16:0/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
GSE103068_5_v_3_volasertib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
r9 part of paragigantocellular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.66858
phosphatidylglycerol metabolic process	GO Biological Process Annotations 2015	1.0	null
short insular gyri, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.82975
PE(18:0/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(16:1(9Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.148
PC(22:2(13Z,16Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-RM2N-0626-SM-48FD6	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A6L9-06A-11R-A32P-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(20:2(11Z,14Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(14:1(9Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
GSE149903_0_v_7_myd88_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CQ-5330-01A-01R-1686-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
corpus callosum	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.32984
Nucleus of Roller	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.74532
PMC7455079-jciinsight-5-140380-s227.xlsx-Supp_Table_8-ILL1_T_Cells_FOXP3_FOXP3	Rummagene Transcription Factor Associations 2026	1.0	null
PC(P-16:0/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
GSE174498,GSE174500_2_v_8_asparaginase_human	RummaGEO Drug Perturbation Signatures	1.0	null
PE(14:1(9Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_2308_KD_DHX8_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-12.2758
GSE149124,GSE149128_3_v_0_cdk7_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:0/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PMC6815035__F5	PFOCR Pathway Figure Associations 2024	1.0	null
Perturb_3532_KD_PTBP1_SRP310663	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-6.02791
PE(24:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(15:0/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_14764_KD_LATS1/LATS2_SRP345234	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.88353
GSE93674_1_v_0_ezh2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A19P-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.411
Bladder-plasmacytoid dendritic cell	Tabula Sapiens Gene-Cell Associations	1.0	0.209167
GTEX-PSDG-0426-SM-2S1OF	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
primary motor cortex (area M1, area 4)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.9388
layer III of rostral entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.43695
GTEX-OOBK-1626-SM-2HMKG	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(24:0/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14613_KO_MTAP_SRP186070	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-16.0914
Perturb_7929_KD_ZCCHC8_SRP222099	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.74366
GTEX-VUSG-0006-SM-3GIK9	GTEx Tissue Sample Gene Expression Profiles	1.0	1.20577
RAD21_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(22:2(13Z,16Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14904_KO_PRMT6_SRP125977	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.47167
Perturb_15531_KD_YAP1/WWTR1_SRP360171	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	7.18159
PC(16:0/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GEO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MAFK	ENCODE Transcription Factor Targets	1.0	null
parvocellular part of r8LRt	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.42909
FOXM1	ENCODE Transcription Factor Targets	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Autoimmune disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.794
cuneus, left, striate	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.971454
macrophage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.103386
increased spleen germinal center number	MGI Mouse Phenotype Associations 2023	1.0	null
Taenia tecta, dorsal part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.21122
ChIP_NR0B1_18358816	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
PC(16:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
Connecting tubule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.619
PC(20:5(5Z,8Z,11Z,14Z,17Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
TRIM28_HEK293_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(dm18:0/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
H3K4me3_megakaryocyte_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
GSE169590_6_v_1_rptor_human	RummaGEO Gene Perturbation Signatures	-1.0	null
lymphnode_4a	HPA Tissue Sample Gene Expression Profiles	1.0	1.02267
PE(16:1(9Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-QV44-0526-SM-2S1RE	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.844028
SEL1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.29064
PC(20:4(8Z,11Z,14Z,17Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
MTHFR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.11315
Primary somatosensory area, unassigned, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.21122
Perturb_551_KD_EWSR1_SRP273158	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.7576
PMC12956708-DataSheet1.xlsx-Supplementary_Table_7-Supplementary_Table_6_The_DEGs_from_high_altitude_between_AMS_and_non-eAMS_group_of_GSE75665_TWIST2	Rummagene Transcription Factor Associations 2026	1.0	null
OPM2	CCLE Cell Line Gene Expression Profiles	1.0	2.6549
H3K4me3_CH12.LX_mm9_4	ENCODE Histone Modification Site Profiles	1.0	null
Perturb_2316_KD_PRPF31_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-8.77856
growth/size/body phenotype	MPO Gene-Phenotype Associations	1.0	null
GATA1	ChEA Transcription Factor Targets	1.0	null
mediodorsal nucleus of thalamus_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.52249
GTEX-Q2AG-0005-SM-33HBX	GTEx Tissue Sample Gene Expression Profiles	1.0	0.861533
Perturb_9725_OE_PCX_SRP255647	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
PE(18:1(9Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(9Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE100316_0_v_6_mtor_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(20:3(5Z,8Z,11Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_18440_KD_CGAS_SRP303519	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.02258
PC(20:5(5Z,8Z,11Z,14Z,17Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
Folium-tuber vermis (VII), granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.8165
PC(22:4(7Z,10Z,13Z,16Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
superficial stratum of r1BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.00995
SUDHL4	CCLE Cell Line Gene Expression Profiles	1.0	1.8876
PE(20:4(8Z,11Z,14Z,17Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
FPGS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.27672
PE(22:4(7Z,10Z,13Z,16Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(9Z,12Z,15Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_3563_KD_HMGA1_SRP299065	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.25288
H3K4me1_G1E_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
PMC11925450-elife-96850-supp2.xlsx-DNMT1_KO_vs_DNMT1_L1TD1_dKO_res-geneName_DNMT1	Rummagene Transcription Factor Associations 2026	1.0	null
PE(P-16:0/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
NCIH1694	CCLE Cell Line Gene CNV Profiles	1.0	2.21876
H3K4me3_GM12864_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Lung-dendritic cell	Tabula Sapiens Gene-Cell Associations	1.0	0.416002
Perturb_4876_KD_BANCR_SRP135857	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-17.3516
Primary somatosensory area, upper limb, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.52408
PC(18:3(9Z,12Z,15Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_13649_OE_miR27_SRP067253	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	6.82031
GTEX-NL4W-0011-R8a-SM-2I3G4	GTEx Tissue Sample Gene Expression Profiles	1.0	0.91639
PC(o-18:2(9Z,12Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-XGQ4-0326-SM-4GIEE	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.844932
PE(18:0/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-N7MT-0011-R5a-SM-2I3G6	GTEx Tissue Sample Gene Expression Profiles	1.0	1.08704
PC(24:1(15Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
HUH7	DepMap CRISPR Gene Dependency	1.0	2.28055
trans-Golgi network membrane	GO Cellular Component Annotations 2025	1.0	null
PE(24:1(15Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
NEU	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.874
phagocytic vesicle	GO Cellular Component Annotations 2025	1.0	null
PC(15:0/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
KARPAS-422	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30751
PC(20:4(5Z,8Z,11Z,14Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041623
PE(20:4(8Z,11Z,14Z,17Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(24:1(15Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14320_KD_CD95L_SRP111532	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
SG in midlateral extrastriate cortex (area 19)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.863824
Interstitial lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.031
GTEX-UJMC-1826-SM-3GADT	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(20:4(8Z,11Z,14Z,17Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
organelle	GO Cellular Component Annotations 2015	1.0	null
PE(20:5(5Z,8Z,11Z,14Z,17Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_12348_KD_BRCA1_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.77537
PE(18:1(11Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-X4XX-0011-R1B-SM-3P622	GTEx Tissue Sample Gene Expression Profiles	1.0	1.37021
PC(o-16:0/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14761_KD_LATS1/LATS2_SRP345234	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-6.06826
UBTF	ENCODE Transcription Factor Targets	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-4733-01A-02R-1873-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SRSF8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.5768
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.9728
CEBPB	ENCODE Transcription Factor Targets	1.0	null
mediodorsal nucleus of thalamus_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.54049
GTEX-T6MO-0626-SM-4DM6P	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.832876
GSE200352_5_v_8_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(o-22:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
lateral terminal nucleus of the accessory optic tract, ventral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.06915
single-organism metabolic process	GO Biological Process Annotations 2015	1.0	null
Perturb_7776_KD_C1QTNF1AS1_ERP112231	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.20371
phagocytosis	GO Biological Process Annotations 2015	1.0	null
GTEX-SSA3-0526-SM-32QPL	GTEx Tissue Sample Gene Expression Profiles	1.0	1.80114
hematopoietic progenitor cell differentiation	GO Biological Process Annotations 2023	1.0	null
JHUEM7	DepMap CRISPR Gene Dependency	1.0	2.62124
GSE143643,GSE143644_1_v_5_hdac3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(22:5(4Z,7Z,10Z,13Z,16Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:2(13Z,16Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:1(11Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(P-16:0/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:1(13Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
THP1	CCLE Cell Line Gene Expression Profiles	1.0	2.29007
GRANTA-519	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.69322
I-II	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.97055
PC(18:4(6Z,9Z,12Z,15Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
H3K4me3_CH12.LX_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
Perturb_3173_KD_LEF1_SRP277903	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.04968
occipito-temporal gyrus, left, superior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.46693
PC(22:4(7Z,10Z,13Z,16Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
GSE81796_0_v_2_enzalutamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
PE(20:2(11Z,14Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PE(24:0/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(14:1(9Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
GSE138019_3_v_2_nudt12_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_9133_KD_PKM2_SRP079926	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	6.04271
GSE169152_3_v_2_ibrutinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GTEX-RU72-0011-R8A-SM-2TF61	GTEx Tissue Sample Gene Expression Profiles	1.0	1.08664
GSE184884_6_v_0_gps2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Pyramus (VIII)	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.52315
PE(20:3(8Z,11Z,14Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Thymic medullary epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.609
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.963282
Perturb_1119_OE_RUNX1_ERP106519	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-5.76541
Perturb_2331_KD_SNRPB_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-6.46277
GSE130383_1_v_0_gps2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
SPI1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2015	1.0	null
Rectum adenocarcinoma_READ_TCGA-AF-2690-01A-02R-1736-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CTCF_MEL cell line_mm9_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(15:0/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
phosphorus metabolic process	GO Biological Process Annotations 2015	1.0	null
developmental process	GO Biological Process Annotations 2015	1.0	null
PE(20:3(5Z,8Z,11Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_11594_OE_MYOD1_SRP106379	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
Head and Neck squamous cell carcinoma_HNSC_TCGA-CQ-5325-01A-01R-1686-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HIF1A_NULL MUTATION_GDS1648_764_mouse_Hepatocytes	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
rheumatoid arthritis	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	1.00628
Nfe2l2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.1364
GTEX-RNOR-0005-SM-2TF4Z	GTEx Tissue Sample Gene Expression Profiles	1.0	1.24625
M1 melanoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.785
PE(20:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(11Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE92457_9_v_12_ethanol_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PC(16:0/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_3720_KD_CHD4/DNMT1_SRP049370	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	6.61354
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
PC(14:1(9Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.233
Perturb_6473_KD_NONO_SRP351321	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.06333
PE(18:4(6Z,9Z,12Z,15Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(6Z,9Z,12Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
MXI1	ENCODE Transcription Factor Targets	1.0	null
GTEX-SNOS-0003-SM-3NMAO	GTEx Tissue Sample Gene Expression Profiles	1.0	1.14252
PE(14:0/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:1(13Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_9648_KD_TCF7L2_SRP327946	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.92376
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-MY-A5BE-01A-21R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(16:1(9Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
hsa-miR-4726-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
Perturb_2793_KD_PRMT1_SRP214436	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.95866
inferolateral temporal cortex (area TEv, area 20)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.18833
Lung adenocarcinoma_LUAD_TCGA-50-5055-01A-01R-1628-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K4me2_B cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5JV-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(16:1(9Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(11Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:2(9Z,12Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
intermediate stratum of isLim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.19985
Brain Lower Grade Glioma_LGG_TCGA-CS-6290-01A-11R-1708-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_2010_KO_Pgrn_SRP371355	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-20.0
Retinal drusen	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.037
LPXN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.04365
LC4-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE162739_8_v_1_bap1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE110178_4_v_0_tranylcypromine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
G86500WE	GlyGen Glycosylated Proteins	1.0	null
PE(18:3(9Z,12Z,15Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
single-stranded DNA 5'-3' DNA exonuclease activity	GO Molecular Function Annotations 2023	1.0	null
PMC8363470-mmc4.xlsx-Strategy_3-KD_CoV-2-_vs_CTL_AR	Rummagene Transcription Factor Associations 2026	1.0	null
outer CP in dorsomedial frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.115
GSE164483_2_v_0_venetoclax_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Perturb_5830_KO_Ddx41_SRP325771	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-20.0
GTEX-XLM4-0011-R8A-SM-4AT44	GTEx Tissue Sample Gene Expression Profiles	1.0	1.57141
PE(18:4(6Z,9Z,12Z,15Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-WL46-0011-R9A-SM-3MJFP	GTEx Tissue Sample Gene Expression Profiles	1.0	1.23516
PC(18:3(6Z,9Z,12Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
AXIN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.64663
PC(24:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_9507_KO_Bach2_SRP399450	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	1.4212
PC(22:1(13Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
CANT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.66341
GTEX-X4XY-1626-SM-46MVN	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.847388
Bone inflammation disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.751
PML_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH3255	CCLE Cell Line Gene CNV Profiles	1.0	1.59016
Retrosplenial area, ventral part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.17282
forebrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056183
III, right, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-2.82587
GSE228413_2_v_1_mavs_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
lateral part of r9B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.50372
gracile nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.29491
r7 part of nucleus prepositus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.55729
SMC3	ENCODE Transcription Factor Targets	1.0	null
PE(20:5(5Z,8Z,11Z,14Z,17Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
trans-golgi network	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
PE(P-18:0/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
organic hydroxy compound metabolic process	GO Biological Process Annotations 2015	1.0	null
PC(18:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
JIMT1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.31082
Thap11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.1
leukocyte	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Sarcoma_SARC_TCGA-SI-A71P-01A-12R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(20:0/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(16:0/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-DA-A1IB-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE199921_1_v_0_romidepsin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE129244_0_v_1_lmo2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
glycerophospholipid metabolic process	GO Biological Process Annotations 2015	1.0	null
PC(20:1(11Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(4Z,7Z,10Z,13Z,16Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-16:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Mesothelioma_MESO_TCGA-TS-A7OY-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
dorsolateral prefrontal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	0.943229
PC(18:2(9Z,12Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-U3ZN-0126-SM-4DXUM	GTEx Tissue Sample Gene Expression Profiles	1.0	0.85448
GSE171837_0_v_1_bortezomib_human	RummaGEO Drug Perturbation Signatures	1.0	null
cellular developmental process	GO Biological Process Annotations 2015	1.0	null
PE(22:4(7Z,10Z,13Z,16Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
MAX_NB4_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Cecal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.006
PE(P-18:1(9Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-21-5784-01A-01R-1635-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
amygdaloid complex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.11592
Perturb_17530_KO_TET1_SRP150212	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.01346
GTEX-WL46-0011-R1A-SM-3LK6M	GTEx Tissue Sample Gene Expression Profiles	1.0	0.877413
hyperactivity	IMPC Knockout Mouse Phenotypes	1.0	null
GSE169152_5_v_2_ibrutinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PE(20:3(8Z,11Z,14Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(15:0/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(9Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_163_KD_RAC1_SRP387923	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	11.4315
Plasmacytoid dendritic cell_Blood_Human	CellMarker Gene-Cell Type Associations	1.0	null
GTEX-PW2O-1726-SM-2S1OO	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(P-18:1(9Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
CSTB_KO_GDS5090_199_mouse_Cerebellum	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Lobule III, granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.06983
medial habenular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.37386
Perturb_14762_KD_LATS1/LATS2_SRP345234	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.83016
PC(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(11Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
r10 part of the inferior olive	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.50048
PMC6858560-NIHMS1538530-supplement-Supplementary_Tables.xlsx-Supplementary_Table_21-Supplementary_Table_21_Aberrant_Splicing_Events_in_TET2_SRSF2_co-mutated_AML_Patients_from_the_TCGA_cohort_TET2	Rummagene Transcription Factor Associations 2026	1.0	null
amygdaloid complex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.956002
GTEX-T2YK-0005-SM-32QOV	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(20:5(5Z,8Z,11Z,14Z,17Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-RTLS-0226-SM-2TF5E	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GTEX-NPJ7-0011-R2a-SM-2I3GF	GTEx Tissue Sample Gene Expression Profiles	1.0	1.28101
GSE168807_0_v_7_dnmt3a_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Perturb_2332_KD_SNRPE_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.65337
496100409_FWM_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.61231
CTCF_CH12.LX_mm9_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(20:3(8Z,11Z,14Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PMC6293073-LSA-2018-00153_TableS3.xlsx-B_KD_Tr_2_genes-155_genes_upregulated_upon_knockdown_of_Tr_2_AR	Rummagene Transcription Factor Associations 2026	1.0	null
PC(18:3(6Z,9Z,12Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE119978,GSE180930_3_v_7_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE100316_5_v_1_mtor_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Perturb_10302_KO_Col4a3_SRP048893	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	20.0
PE(18:0/24:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_9009_KD_RELA_SRP061289	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	8.14645
PE(14:1(9Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
appendices_4c	HPA Tissue Sample Gene Expression Profiles	1.0	0.941771
PC(dm18:0/dm18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE137818_5_v_1_brca2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2MR-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(18:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(9Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
spinal cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.249653
PE(20:3(5Z,8Z,11Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-XLM4-0004-SM-4AT5I	GTEx Tissue Sample Gene Expression Profiles	1.0	2.54714
SF268	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.8498
Brain Lower Grade Glioma_LGG_TCGA-FG-5963-01A-11R-1708-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ventral striatum	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.04419
Brain Lower Grade Glioma_LGG_TCGA-HT-8013-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-CS-4942-01A-01R-1470-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(P-16:0/14:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:0/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-P44H-0226-SM-2XCEU	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Zbtb2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.4671
PC(18:1(11Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(11Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
GSE146074_10_v_7_ly6e_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(16:0/14:0)	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:0/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
increased spleen weight	IMPC Knockout Mouse Phenotypes	1.0	null
systemic scleroderma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.765535
PE(18:4(6Z,9Z,12Z,15Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(11Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(24:0/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
GSE223008_6_v_2_calhm6_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(20:5(5Z,8Z,11Z,14Z,17Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15296
JHH-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14241
Perturb_13370_KD_NR1D1_ERP118284	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.17509
PE(16:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
alcohol metabolic process	GO Biological Process Annotations 2015	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-GC-A6I3-11A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.92789
GSE141328_1_v_0_rock2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GTEX-T6MN-0526-SM-32PMS	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PMC8046804-41467_2021_22478_MOESM11_ESM.xlsx-Del_AA-TCGA-Unnamed_37_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
Dorsal peduncular area, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.5609
GSE162084,GSE162085_2_v_6_bap1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-FF-A7CR-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE88819_0_v_8_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
bone disease	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	1.00628
precuneus, left, superior lateral bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.07448
intermediate portion of DFC (area 9/46)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.54663
PC(22:1(13Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_256_KD_KLF6_SRP150445	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.95199
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1065
PC(18:2(9Z,12Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
arcuate nucleus of medulla, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.0803
PE(22:2(13Z,16Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-V955-0004-SM-3NMDH	GTEx Tissue Sample Gene Expression Profiles	1.0	2.03901
PC(14:0/16:0)	HMDB Metabolites of Enzymes	1.0	null
Bed nuclei of the stria terminalis, anterior division, juxtacapsular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.63315
disease of anatomical entity	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	1.00628
GSE153124_4_v_3_dsg2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(o-18:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
Alzheimer Disease	DisGeNET Gene-Disease Associations	1.0	null
PC(24:0/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
GSE197564,GSE198513_2_v_0_mettl3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PMC6225799-annrheumdis-2018-213524supp003.xlsx-Activated-state-LPS-Gene_Symbol_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
superficial stratum of r6BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.00058
PMC12067276-pnas.2416516122.sapp.pdf-9-LEF1_LEF1	Rummagene Transcription Factor Associations 2026	1.0	null
TCF12	ENCODE Transcription Factor Targets	1.0	null
primary motor cortex (area M1, area 4)_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-0.969339
RCOR1_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NOL11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	5.9248
PC(16:1(9Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
ILF3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.76655
Agranular insular area, dorsal part, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.02178
CTCF_GM12872_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-WL46-0011-R11A-SM-3MJFT	GTEx Tissue Sample Gene Expression Profiles	1.0	0.971939
PMC8410861-41467_2021_25544_MOESM32_ESM.xlsx-MCR-MCR_cells_-_DGE_iGCA_testis_vs_adult_testis_from_GSE112013_and_GSE124263_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
PC(20:0/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
MYC_NB4_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(o-22:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_12577_KO_NOTCH2_SRP143456	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.16913
PE(15:0/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
M-1	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.80357
GSE95182_0_v_1_acetaminophen_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(14:0/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
skeletalmuscle_a	HPA Tissue Sample Gene Expression Profiles	-1.0	-1.85091
PC(P-18:1(11Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:0/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_7917_KD_SNRPA_SRP376104	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.47237
spleen hyperplasia	MGI Mouse Phenotype Associations 2023	1.0	null
PC(22:4(7Z,10Z,13Z,16Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
hippocampus (hippocampal formation)_4 mos_M_12890	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	0.972724
GSE131649_6_v_11_hemin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14241
ZBTB26	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2286
Myeloblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.596
VZ in postamygdaloid region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.01336
PC(16:0/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE228413_0_v_3_mavs_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
lipid metabolic process	GO Biological Process Annotations 2015	1.0	null
GSE193351_1_v_0_ruxolitinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE221327_4_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A3SQ-01A-21R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_15867_KD_KDM3A_SRP248023	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	18.6576
GTEX-QLQW-1326-SM-2S1QS	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(15:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Retrosplenial area, ventral part, layer 2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.31946
PC(P-18:1(11Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
determined	GeneRIF Biological Term Annotations	1.0	null
Perturb_17614_OE_FOXP2_SRP225889	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
TAL1	ChEA Transcription Factor Targets	1.0	null
PE(24:0/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE154081_3_v_0_sildenafil_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Paramedian lobule, granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.72189
GSE137653_4_v_0_siglecf_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:2(9Z,12Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE110178_4_v_3_tranylcypromine_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06289
PE(20:3(5Z,8Z,11Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-16:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
plexiform layer of TuStr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.05851
Kidney renal papillary cell carcinoma_KIRP_TCGA-MH-A562-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-ED-A5KG-01A-11R-A27V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE137325_2_v_0_copanlisib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GTEX-XOTO-0006-SM-4B64T	GTEx Tissue Sample Gene Expression Profiles	1.0	0.847249
GTEX-WK11-0006-SM-3NB3J	GTEx Tissue Sample Gene Expression Profiles	1.0	1.06025
PE(22:5(4Z,7Z,10Z,13Z,16Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_6481_KD_SERBP1_ERP118886	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.77581
TE10	CCLE Cell Line Gene CNV Profiles	1.0	1.90204
PE(22:5(4Z,7Z,10Z,13Z,16Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_15386_KD_FGFRL1_SRP319157	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.25073
MEF2C	ENCODE Transcription Factor Targets	1.0	null
PC(20:2(11Z,14Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-PWO3-1026-SM-2I5F2	GTEx Tissue Sample Gene Expression Profiles	1.0	1.02509
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2RC-01A-11R-A18M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE179974_3_v_4_carboplatin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Brain ventricle	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
cerebellar cortex_11 yrs_F_12289	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.08288
Perturb_2474_OE_HER2_SRP229951	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.4338
GTEX-O5YT-1626-SM-32PK6	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.945076
Perturb_14570_KO_RORC_SRP185849	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
PC(20:5(5Z,8Z,11Z,14Z,17Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PC(14:1(9Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
outer SZ in inferolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.42296
GTEX-WRHK-1626-SM-3MJFH	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
amygdaloid complex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-0.92164
H3K4me2_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
GTEX-XUJ4-0004-SM-4BOQE	GTEx Tissue Sample Gene Expression Profiles	1.0	3.11426
PC(18:3(9Z,12Z,15Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-5675-01A-11R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
BCL11A_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
polymorphic layer of rostral subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.91334
Perturb_7135_KD_FOXA2_SRP360959	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.65995
PE(15:0/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
r1 part of lateral pontine nuclei	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.00708
H3K9me3_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
GSE161842_1_v_2_kdm6b_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PC(14:0/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
Kidney Chromophobe_KICH_TCGA-KO-8413-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(20:4(8Z,11Z,14Z,17Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14128_KD_AKR1B1_SRP400403	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
Perturb_9332_KO_CDKN2A_SRP158424	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.45367
GSE223008_11_v_8_calhm6_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE95077_5_v_2_amiloride_human	RummaGEO Drug Perturbation Signatures	-1.0	null
H3K4me1_brain_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
PC(20:0/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Diazinon	CTD Gene-Chemical Interactions	1.0	null
PE(20:2(11Z,14Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
H3K9me3_CH12.LX_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
GSE174498,GSE174500_5_v_1_asparaginase_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PC(14:0/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_13136_KO_Gadd45a/Ing1_SRP149486	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	20.0
PE(P-16:0/24:0)	HMDB Metabolites of Enzymes	1.0	null
GSE86507,GSE86509_4_v_8_hoxb7_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(16:0/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(24:0/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_12014_KO_Pgrn_SRP371359	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-9.89225
m1Lim part of the midbrain reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.134
GTEX-WL46-0011-R6A-SM-3LK6X	GTEx Tissue Sample Gene Expression Profiles	1.0	1.02418
PE(18:2(9Z,12Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
TFAP4::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3069
PC(18:1(9Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
MAFK	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4515
premotor cortex (area 6)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.19029
PC(20:1(11Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
ATF2	ENCODE Transcription Factor Targets	1.0	null
PC(16:0/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
PC(16:1(9Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
GFI1B-20887958-HPC-7-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
t66-lung_female_2w	MoTrPAC Rat Endurance Exercise Training	-1.0	-4.5649
PE(16:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-PLZ4-0226-SM-2S1NW	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
nucleus of the inferior collicular brachium, caudal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.28314
GTEX-SE5C-0326-SM-4BRWX	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(16:1(9Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(16:0/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE185519_3_v_2_gilteritinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GTEX-XBED-0008-SM-47JWO	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.885362
dorsolateral prefrontal cortex_8 yrs_M_12981	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.9717
GSE110178_5_v_0_tranylcypromine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GSE208435_0_v_1_dnmt3a_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Perturb_11542_OE_KRAS_SRP175175	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-17.7167
retrotrapezoid nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.00058
PE(16:1(9Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(9Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(4Z,7Z,10Z,13Z,16Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PMC8494348-pone.0257161.s002.xlsx-D20-NOT_ext_ext-NOT_ext-Gene_Name_NR4A2	Rummagene Transcription Factor Associations 2026	1.0	null
primary visual cortex (striate cortex, area V1/17)_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.63922
PC(P-18:1(9Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
P300-27268052-CHIP-SEQ-BCELLS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
PE(P-18:1(11Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:0/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PE(24:0/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(8Z,11Z,14Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-RNOR-2226-SM-2TF5O	GTEx Tissue Sample Gene Expression Profiles	1.0	0.913018
amygdaloid complex_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.10537
PC(P-16:0/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE154464_1_v_2_cdk6_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Distal tubular epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.862
increased leukocyte cell number	MGI Mouse Phenotype Associations 2023	1.0	null
PE(18:3(9Z,12Z,15Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-VJYA-1326-SM-3GIJC	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
SPI1_HL-60_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(16:1(9Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
NCIH2141	CCLE Cell Line Gene CNV Profiles	1.0	2.05703
H3K27ac_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
primary motor cortex (area M1, area 4)_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.65477
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-UPJH-0001-SM-3NMDE	GTEx Tissue Sample Gene Expression Profiles	1.0	1.31303
MYC	ENCODE Transcription Factor Targets	1.0	null
GSE190235_0_v_2_foxo3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
496100596_FWM_dementia_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.37937
PC(P-18:1(11Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:0/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_18485_KD_CAV1_SRP251283	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	8.70624
GSE184087_0_v_1_tert_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ESRRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8767
PC(22:1(13Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
ATM_knockout_74_GSE23116	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.26357
Perturb_11525_KD_SNW1_SRP092641	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	5.02112
VMRCRCZ	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36686
Perturb_1900_KO_Nr1h3/Nr1h2_SRP043965	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	12.0748
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(11Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
H3K4me1_MEL cell line_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
PC(o-18:2(9Z,12Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
NACC1	ChEA Transcription Factor Targets	1.0	null
PE(22:5(4Z,7Z,10Z,13Z,16Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
PC(16:1(9Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_9012_KD_STAG2_SRP348449	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.76099
PC(24:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
PMC8709578-elife-69843-supp2.xlsx-HSF1_KO_2_Ctr-Gene_Name_HSF1	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-RU72-0926-SM-2TF6B	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
early endosome	GO Cellular Component Annotations 2023	1.0	null
PE(14:0/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(11Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
BCLAF1	ENCODE Transcription Factor Targets	1.0	null
Choline	MW Enzyme Metabolite Associations	1.0	null
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.791
GLI3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3042
PE(18:1(11Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
GSE229580_2_v_3_creb1_human	RummaGEO Gene Perturbation Signatures	1.0	null
PE(22:0/18:0)	HMDB Metabolites of Enzymes	1.0	null
brain_a	HPA Tissue Sample Gene Expression Profiles	1.0	1.00332
GSE210580_5_v_11_rag2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
brain	GTEx Tissue Gene Expression Profiles	1.0	0.902307
GSE119978,GSE180930_2_v_1_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE147834_1_v_0_doxorubicin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PC(20:1(11Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_10270_KO_Camk2d_SRP281889	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	7.28671
PC(o-18:1(9Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(6Z,9Z,12Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(18:0/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PMC9894241-pnas.2211429119.sd05.xlsx-G4_REST-Dataset_S6_Differentially_expressed_genes_in_G1-G8_REST	Rummagene Transcription Factor Associations 2026	1.0	null
PE(14:0/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:2(11Z,14Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
GSE128145_2_v_0_ctbp2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Prostate adenocarcinoma_PRAD_TCGA-G9-7523-01A-11R-2263-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-S4Z8-0226-SM-4AD5K	GTEx Tissue Sample Gene Expression Profiles	1.0	1.11853
PE(22:4(7Z,10Z,13Z,16Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
NCIH889	CCLE Cell Line Gene CNV Profiles	-1.0	-2.55025
GTEX-S95S-0002-SM-3NM8K	GTEx Tissue Sample Gene Expression Profiles	1.0	2.04331
ATF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.7312
Perturb_17241_KD_IRF1_SRP337933	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-15.5514
Perturb_17613_KI_FOXP2_SRP225889	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
polymorphic layer of caudal subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.951815
PE(15:0/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
Vertebrate muscular system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
anterior (rostral) cingulate (medial prefrontal) cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.38307
r8 part of lateral reticular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.90303
dorsolateral prefrontal cortex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.12546
superficial stratum of cerebellar hemisphere	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.05319
Endoplasmic reticulum subcompartment	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
GSE209911_0_v_1_ncstn_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(18:3(6Z,9Z,12Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
ventrolateral prefrontal cortex_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.22104
TAL1-20887958-HPC-7-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
PC(18:1(9Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
CL11	DepMap CRISPR Gene Dependency	1.0	5.36725
Perturb_12666_OE_GFP_SRP308919	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.80416
Lung squamous cell carcinoma_LUSC_TCGA-90-7964-01A-21R-2187-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE217776,GSE217829_2_v_6_sgf29_human	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-Q2AI-1326-SM-2S1PL	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(14:0/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:2(11Z,14Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_3377_KO_Kat6a_SRP081081	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	7.27521
Pyramus (VIII), granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.45062
PC(24:1(15Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
Sarcoma_SARC_TCGA-DX-A3U8-01A-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Transcription export complex 2	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.9
PC(18:0/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:2(11Z,14Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14578_KD_GPX1_SRP119929	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	15.4123
raphe obscurus nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.30449
PC(20:5(5Z,8Z,11Z,14Z,17Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:2(11Z,14Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-R45C-0008-SM-48FF2	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(20:3(5Z,8Z,11Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(6Z,9Z,12Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
GSE188869,GSE188871_1_v_3_kat7_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(20:0/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:0/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(o-22:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:5(5Z,8Z,11Z,14Z,17Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-PLZ6-1526-SM-2S1OC	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Perturb_9130_KD_PHGDH_ERP020769	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.68838
PC(18:1(11Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE179974_3_v_2_carboplatin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC7773934-Table_1.XLSX-Table_S2-Supplementary_Table_2_TBX22_co-expressed_genes_detailed_results_TBX22	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-X585-0011-R1B-SM-46MVE	GTEx Tissue Sample Gene Expression Profiles	1.0	0.9783
EZH2	ENCODE Transcription Factor Targets	1.0	null
PE(P-18:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-PWO3-0011-R1A-SM-2I5EW	GTEx Tissue Sample Gene Expression Profiles	1.0	0.864965
Lung adenocarcinoma_LUAD_TCGA-05-4405-01A-21R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SW1710	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48489
PMC8020666-pnas.2015855118.sd11.xlsx-LPS_strongerResponse-Unnamed_13_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
Perturb_5427_KD_ARID1A_SRP356912	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	10.2425
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2M8-06A-12R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_14054_OE_NFIB_SRP281947	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	5.1459
GSE200352_1_v_8_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Primary somatosensory area, lower limb, layer 6b	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.05851
PC(22:5(4Z,7Z,10Z,13Z,16Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Pancreas	GTEx Tissue Gene Expression Profiles 2023	-1.0	-0.699614
GSE88819_0_v_10_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(14:1(9Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
CTCF_GM19239_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(14:1(9Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(9Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
GSE149903_6_v_7_myd88_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PMC12067276-pnas.2416516122.sapp.pdf-9-LEF1_1_LEF1	Rummagene Transcription Factor Associations 2026	1.0	null
PC(20:2(11Z,14Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
primary auditory cortex (core)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.14157
PC(22:4(7Z,10Z,13Z,16Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05335
GTEX-RVPU-2426-SM-2XCAR	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(20:3(5Z,8Z,11Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-XUJ4-0226-SM-4BOP8	GTEx Tissue Sample Gene Expression Profiles	1.0	0.9319
VCAP	DepMap CRISPR Gene Dependency	1.0	2.26625
Perturb_12372_KD_SKP2_SRP297799	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	8.45633
496100507_FWM_dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.33596
PC(22:1(13Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_14539_KO_Kras_SRP311976	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-2.48386
GTEX-SSA3-0426-SM-32QPI	GTEx Tissue Sample Gene Expression Profiles	1.0	1.00785
Brain Lower Grade Glioma_LGG_TCGA-HT-A618-01A-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.11131
PC(20:4(5Z,8Z,11Z,14Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_2363_KD_ZNF589_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	15.2929
nasopharynx	HPA Tissue Protein Expression Profiles	1.0	0.742911
ascospore-type prospore	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.59
SMC3_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_GM12865_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PE(16:0/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
dentate nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.44263
Lung adenocarcinoma_LUAD_TCGA-55-6980-01A-11R-1949-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
PC(dm18:0/dm18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
H3K4me1_bone marrow macrophage_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Trunk	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PC(20:2(11Z,14Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_2312_KD_LUC7L2_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.94756
PE(18:0/15:0)	HMDB Metabolites of Enzymes	1.0	null
hippocampus (hippocampal formation)_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.26257
PE(20:3(5Z,8Z,11Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PMC12616242-can-24-3452_supplementary_table_s2_suppst2.xlsx-Down_bins-Down_bins_loosing_H3K27me3_in_hpMSC-EWSR1_FLI1_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4173-01A-02R-1289-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(22:5(4Z,7Z,10Z,13Z,16Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-S33H-2326-SM-2XCB3	GTEx Tissue Sample Gene Expression Profiles	1.0	1.04263
PC(24:0/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
mantle zone of r7BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.26067
GSE193282_3_v_1_cd44_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Human - Bone Marrow - L2 - AXL+ Dendritic Cell	HuBMAP Azimuth Cell Type Annotations	1.0	null
NACC1-18358816-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
PC(20:3(8Z,11Z,14Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_10192_KD_AML1ETO_SRP149373	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.088584
Perturb_757_KO_DNMT3B_SRP389363	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.41035
PE(18:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:1(11Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
amygdaloid complex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.77503
PC(20:5(5Z,8Z,11Z,14Z,17Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(16:0/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(14:1(9Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
vesicle	GO Cellular Component Annotations 2015	1.0	null
PE(14:0/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
inferolateral temporal cortex (area TEv, area 20)_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.16687
H3K27me3_G1E-ER4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(18:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-XUZC-0226-SM-4BOO7	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.834928
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44244
PC(18:1(11Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PE(14:0/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:4(7Z,10Z,13Z,16Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Myelocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.647
NR6A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.3791
PE(22:1(13Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(9Z)e/2:0)	HMDB Metabolites of Enzymes	1.0	null
PMC12867126-NIHMS2139346-supplement-Supplementary_Table_S1.pdf-5-SOX17_SOX17	Rummagene Transcription Factor Associations 2026	1.0	null
COV644	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.20654
PE(22:4(7Z,10Z,13Z,16Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-J4-A67M-01A-11R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC4580636-pone.0138782.s005.xls-Sheet1-Table_S3_List_of_Genes_with_RUNX1_binding_sites_in_each_Cytogenetic_Group_RUNX1	Rummagene Transcription Factor Associations 2026	1.0	null
POLR2AphosphoS2_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NALM16	DepMap CRISPR Gene Dependency	1.0	3.28918
single-organism localization	GO Biological Process Annotations 2015	1.0	null
ROS50	DepMap CRISPR Gene Dependency	1.0	2.26948
496100470_HIP_possible Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.05232
PC(14:1(9Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(16:1(9Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Autoimmune disease of musculoskeletal system	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.751
PE(P-18:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
GSE200099_3_v_1_honokiol_human	RummaGEO Drug Perturbation Signatures	1.0	null
PE(20:3(8Z,11Z,14Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_11949_KD_NRF2_SRP092641	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
amygdaloid complex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.05675
Multiple sclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.101
GSE110178_4_v_6_tranylcypromine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
BALL-1	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	1.80328
r5 part of posteroventral cochlear nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.41097
PE(18:2(9Z,12Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_15443_KD_MED25_SRP212208	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.84818
GSE205070_2_v_9_mertk_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PMC5927328-NIHMS77085-supplement-Table_S4.xlsx-Table_S4A_LPS_induced_genes_GO-Unnamed_14_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-WL46-0011-R2A-SM-3LK6O	GTEx Tissue Sample Gene Expression Profiles	1.0	1.04249
cytoplasmic vesicle	GO Cellular Component Annotations 2015	1.0	null
Systemic Scleroderma	DisGeNET Gene-Disease Associations	1.0	null
PMC9541747-AGE-53-680-s003.xlsx-TableS6-Table_S6_Genes_with_missense_mutations_in_Yaroslavl_cattle_MAF_0_1_and_FST_0_4_in_the_1000_Bull_Genomes_Run_9_MAF	Rummagene Transcription Factor Associations 2026	1.0	null
area postrema	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.26318
Perturb_2068_KD_BMAL1_SRP041298	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.27642
GSE79291_1_v_2_streptozotocin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
GTEX-X4XX-0011-R8B-SM-46MWM	GTEx Tissue Sample Gene Expression Profiles	1.0	1.49754
GSE100886,GSE100893_1_v_3_parp14_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(22:5(4Z,7Z,10Z,13Z,16Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_11468_KO_AURKA_SRP298688	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.70508
MALL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.23462
Perturb_12160_OE_TCF7_SRP144189	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.0058
Perturb_2586_KD_RORC_SRP066204	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	13.8246
PE(20:5(5Z,8Z,11Z,14Z,17Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
H3K9me3_Penis Foreskin Fibroblast Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.883569
t70-white-adipose_consensus	MoTrPAC Rat Endurance Exercise Training	1.0	1.36653
PC(20:4(8Z,11Z,14Z,17Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-TMZS-0326-SM-3DB9P	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
HCC-827	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PC(20:3(5Z,8Z,11Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
organic substance metabolic process	GO Biological Process Annotations 2015	1.0	null
PE(16:1(9Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
nih 3T3	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.16078
GTEX-NL4W-0011-R11A-SM-2I3DW	GTEx Tissue Sample Gene Expression Profiles	1.0	1.03506
PE(22:0/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PMC4531812-13058_2015_618_MOESM11_ESM.xlsx-Metabric_Sparse_KM_976-TFAP2B_TFAP2B	Rummagene Transcription Factor Associations 2026	1.0	null
mantle zone of Hb	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.20397
orbital frontal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	1.23146
PE(22:2(13Z,16Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(9Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
PC(o-16:1(9Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
GSE179974_3_v_1_carboplatin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PC(18:2(9Z,12Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE152441,GSE152442_1_v_5_folic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26386
GTEX-QVUS-0011-R9A-SM-3GIJA	GTEx Tissue Sample Gene Expression Profiles	1.0	1.47997
H3K4me3_GM12875_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
A-Netherlands-602-2009(H1N1)_0Hour_None_GSE40844	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.62176
blood	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Caudoputamen	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.05971
GTEX-X5EB-2326-SM-46MW5	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(22:5(4Z,7Z,10Z,13Z,16Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
PE(24:0/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:0/14:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_11691_OE_MYC_SRP253943	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-6.45041
membrane part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Perturb_6622_KD_NFE2L2_SRP158498	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.0592
H3K4me1_CH12.LX_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
GTEX-XLM4-2026-SM-4AT4X	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Perturb_3367_KO_H1_SRP234772	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	11.2291
posteroventral (inferior) parietal cortex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.23248
PC(22:1(13Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
HSC-4	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PC(18:1(9Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:0/15:0)	HMDB Metabolites of Enzymes	1.0	null
PMC6858560-NIHMS1538530-supplement-Supplementary_Tables.xlsx-Supplementary_Table_22-Supplementary_Table_22_Aberrant_Splicing_Events_in_TET2_SRSF2_co-mutated_AML_Patients_from_the_Beat-AML_cohort_TET2	Rummagene Transcription Factor Associations 2026	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-98-A53H-01A-12R-A262-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-WYVS-0006-SM-3NMA7	GTEx Tissue Sample Gene Expression Profiles	1.0	1.41554
PC(14:1(9Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
POLR2A_GM19193_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAZ_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(20:1(11Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE180200,GSE180201_3_v_1_qpctl_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_14352_KD_MOV10_SRP120600	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.85659
IRF4	ENCODE Transcription Factor Targets	1.0	null
PE(22:5(4Z,7Z,10Z,13Z,16Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-Q2AI-1726-SM-2S1PZ	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(22:2(13Z,16Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(9Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(4Z,7Z,10Z,13Z,16Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
Paraflocculus, molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.22039
Perturb_17551_KD_PHF14_SRP354496	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.97745
AGS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21904
GTEX-OHPM-1626-SM-2HMK4	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Pancreatic adenocarcinoma_PAAD_TCGA-2L-AAQL-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(P-18:1(11Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
YY1	ENCODE Transcription Factor Targets	1.0	null
IZ in lateral temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.12938
ELK3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2521
Lung squamous cell carcinoma_LUSC_TCGA-34-2608-01A-02R-0851-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(P-18:0/14:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_8472_Mut|KD_IDH1_SRP099826	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	10.8021
PC(18:0/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(9Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PE(14:0/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-U4B1-1626-SM-3DB8N	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Perturb_4934_OE_KLF17_ERP131959	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.23849
PC(18:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_459_KD_RPLP1/RPLP2_SRP202033	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.4155
ITPR1	Pathway Commons Protein-Protein Interactions	1.0	null
PC(24:1(15Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.134
Autoimmune disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.751
layer V of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.59802
H2AFZ_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Perturb_8383_KO_LSD1_DRP006351	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.79196
Perturb_7645_KD_METTL3_SRP154311	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.84813
Prostate adenocarcinoma_PRAD_TCGA-M7-A723-01A-12R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TAL1-20887958-HPC-7-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.16429
Innate Immune System	Reactome Pathways 2014	1.0	null
PE(16:1(9Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-TML8-0001-SM-3NMAF	GTEx Tissue Sample Gene Expression Profiles	1.0	3.03066
GTEX-XMK1-0008-SM-4GICF	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Sarcoma_SARC_TCGA-DX-A6BE-01A-41R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(20:0/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
PMC12048643-44318_2025_409_MOESM3_ESM.xlsx-regulonTargets-MAFA_MAFA	Rummagene Transcription Factor Associations 2026	1.0	null
CAKI2	CCLE Cell Line Gene Expression Profiles	-1.0	-1.58523
Perturb_550_KD_EWSR1FLI1_SRP273158	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
NR0B1-18358816-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
GTEX-PWOO-0526-SM-2S1Q3	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Adrenocortical carcinoma_ACC_TCGA-OR-A5LK-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_12339_KD_SAM68_SRP230812	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.35725
PE(20:4(8Z,11Z,14Z,17Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(9Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_3866_KD_MEF2D_SRP333146	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.30161
PC(20:0/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GSE149903_5_v_2_myd88_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PE(16:1(9Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-OHPN-0011-R9A-SM-4DXUH	GTEx Tissue Sample Gene Expression Profiles	1.0	1.72825
GSE65617_0_v_4_aire_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(22:0/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(11Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2023	1.0	null
PE(24:0/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-R55D-0826-SM-48FEA	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.831038
GSE178255_1_v_0_tlr4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
RCOR1_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
G11629QQ	GlyGen Glycosylated Proteins	1.0	null
PE(18:1(11Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
NIPSNAP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.22408
PC(18:1(11Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(15:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
glis2_17618285_kidney_lof_mouse_gpl2897_gds2817	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.17571
PC(14:0/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_11173_Mut_Ctbp2_SRP188140	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-2.67684
POLR2A_MEL cell line_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
irf8_00000000_splenic_cd11bplusgrdash1_hdash2b_gen_background_lof_mouse_gpl6887_gse39228	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.739076
GTEX-T6MN-0005-SM-32PLJ	GTEx Tissue Sample Gene Expression Profiles	1.0	1.35216
GSE165548_2_v_13_gemcitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Perturb_8495_KD_U2AF1_SRP221683	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	9.76064
PE(20:3(5Z,8Z,11Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
TRA2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77489
Perturb_9286_KD_LMTK2_SRP276928	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.26273
USF1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Lung adenocarcinoma_LUAD_TCGA-97-A4M0-01A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-U3ZH-0002-SM-3NMDD	GTEx Tissue Sample Gene Expression Profiles	1.0	1.3051
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Azurophil granule lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.735
GTEX-WL46-0011-R5A-SM-3LK6V	GTEx Tissue Sample Gene Expression Profiles	1.0	0.85966
H3K4me3_GM06990_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
GTEX-WZTO-1026-SM-3NM9P	GTEx Tissue Sample Gene Expression Profiles	1.0	1.12928
Sarcoma_SARC_TCGA-RN-A68Q-01A-11R-A30C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_2717_KO_TET1_SRP110516	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
GTEX-PWN1-1626-SM-2S1OL	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
BATF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6777
GSE158715_3_v_0_cyp1b1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B8-A54G-01A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE160083,GSE160084_2_v_3_tamoxifen_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Perturb_508_KO_PAF1_ERP136917	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.08319
periventricular stratum of r7BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.51932
PE(22:2(13Z,16Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(6Z,9Z,12Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
YKG1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.69024
PC(18:3(9Z,12Z,15Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(9Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PMC3805607__F2	PFOCR Pathway Figure Associations 2023	1.0	null
PC(20:0/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-RU72-0006-SM-2TF65	GTEx Tissue Sample Gene Expression Profiles	1.0	0.890243
GTEX-SUCS-0526-SM-4DM56	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(22:5(7Z,10Z,13Z,16Z,19Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:0/16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:2(11Z,14Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:0/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-U3ZM-0008-SM-4DXTQ	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.895135
GTEX-N7MT-0011-R8a-SM-2I5GU	GTEx Tissue Sample Gene Expression Profiles	1.0	1.01949
PC(24:0/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2807-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-XAJ8-0126-SM-47JYG	GTEx Tissue Sample Gene Expression Profiles	1.0	1.40425
spleen	HPA Tissue Gene Expression Profiles	1.0	0.983786
lymphnode_4b	HPA Tissue Sample Gene Expression Profiles	1.0	1.30249
cytoplasmic part	LOCATE Predicted Protein Localization Annotations	1.0	null
Rheumatic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.929
PE(18:2(9Z,12Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-UPK5-0003-SM-3NMDI	GTEx Tissue Sample Gene Expression Profiles	1.0	0.907735
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066708
testis	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.34985
GTEX-P4QS-1826-SM-2S1NI	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(20:4(5Z,8Z,11Z,14Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
FEV	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2135
SP1	ENCODE Transcription Factor Targets	1.0	null
GTEX-WEY5-0001-SM-3P61Z	GTEx Tissue Sample Gene Expression Profiles	1.0	1.05511
PE(15:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
BHLHE22	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9074
GSE144443_5_v_3_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PE(P-16:0/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
ChIP_NACC1_18358816	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
SMC3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(18:3(6Z,9Z,12Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
PE(24:0/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(9Z,12Z,15Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE166294_0_v_1_etv5_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.105
Perturb_3327_KO_miR23_SRP092642	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	12.4171
GTEX-PX3G-0926-SM-48U12	GTEx Tissue Sample Gene Expression Profiles	1.0	1.79232
BCLAF1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(20:4(8Z,11Z,14Z,17Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:1(13Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-7079-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
TMEM52	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.47065
bone marrow	HPA Tissue Protein Expression Profiles	-1.0	-1.14718
Hemispheric regions	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.15967
Neurogenic Muscular Atrophy_Muscle - Striated (Skeletal) (MMHCC)_GSE2566	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.20299
catalytic activity	GO Molecular Function Annotations 2015	1.0	null
GTEX-T8EM-1326-SM-3DB7G	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.875829
PE(18:1(9Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
20140255-TableS2	GeneSigDB Published Gene Signatures	1.0	null
Perturb_5426_KD_ARID1A_SRP356912	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	5.2144
GSE185519_6_v_2_gilteritinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
PE(20:3(8Z,11Z,14Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-QEG5-0426-SM-2I5GJ	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(P-18:0/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(14:0/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GSE209598_0_v_3_tgfbr2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_6469_OE_PROX1_ERP110083	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	11.9106
ctnnb1_19652203_myeloma_lof_human_gpl570_gds3578	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.365694
PC(18:3(9Z,12Z,15Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(16:0/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:1(11Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
increased IgG level	MGI Mouse Phenotype Associations 2023	1.0	null
PE(14:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
Rfx6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.7571
SOX10	MotifMap Predicted Transcription Factor Targets	1.0	null
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.883569
KMRC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33201
GSE127916_1_v_3_nras_human	RummaGEO Gene Perturbation Signatures	1.0	null
PE(20:3(8Z,11Z,14Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
PC(24:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
orbital frontal cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.07932
GSE137914_0_v_3_tet3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_4310_KO_Gata1_SRP059610	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	5.79564
GSE95077_1_v_2_amiloride_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GTEX-U3ZM-0002-SM-3NMDM	GTEx Tissue Sample Gene Expression Profiles	1.0	1.21362
H3K4me1_megakaryocyte_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
Perturb_8848_KD_APC_SRP267478	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
glycerolipid metabolic process	GO Biological Process Annotations 2015	1.0	null
GSE96598_1_v_2_ifetroban_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PIERCE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.16973
dorsolateral part of m2A	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.24086
Perturb_6432_OE_RBFOX1_SRP372391	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-18.2291
PE(20:3(8Z,11Z,14Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Lung-plasmacytoid dendritic cell	Tabula Sapiens Gene-Cell Associations	1.0	0.170036
PE(24:0/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
ZNF507	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.59557
immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.206913
musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.378885
GSE133763_0_v_1_chd1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Perturb_14051_OE_NFIB_SRP281947	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
H3K4me1_CH12.LX_mm9_4	ENCODE Histone Modification Site Profiles	1.0	null
GTEX-NPJ8-0011-R2a-SM-2TC6M	GTEx Tissue Sample Gene Expression Profiles	1.0	0.914027
Perturb_1700_KO_Gprc5c_ERP125636	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-1.76811
GSE183413_0_v_2_ash1l_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE165548_2_v_5_gemcitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
PC(20:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05573
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
ficolin-1-rich granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.736
PC(o-20:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_2325_KD_SF3A1_SRP268983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.23278
Perturb_6460_KO_EZH2_SRP136292	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.40978
Perturb_2353_KD_FOXD4L6_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	12.3979
trans-Golgi network	GO Cellular Component Annotations 2025	1.0	null
GNG13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.64333
Ethanolamine	HMDB Metabolites of Enzymes	1.0	null
PC(22:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-XGQ4-0126-SM-4AT4H	GTEx Tissue Sample Gene Expression Profiles	1.0	1.13948
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067274
GSE163275_1_v_0_irf8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Renal Fibrosis	DisGeNET Gene-Disease Associations	1.0	null
BMPR1A_knockout_222_GSE48092	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	0.851192
PC(24:1(15Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
NCOA2_KO_GDS4785_172_mouse_Liver	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_12149_KO|OE_TP53|CENPA_ERP125655	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	11.3747
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EA-A5ZD-01A-11R-A28H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SNF5_DN.V1	MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations	1.0	null
Perturb_318_KD_SETX_SRP353945	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.56776
Cell Transformation, Neoplastic	CTD Gene-Disease Associations	1.0	1.26236
CTNNB1	ChEA Transcription Factor Targets	1.0	null
PE(P-18:1(9Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-XLM4-0011-R9A-SM-4AT45	GTEx Tissue Sample Gene Expression Profiles	1.0	1.63531
Perturb_2434_KD_TRIM25_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.52322
cytoplasmic vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.18702
PC(20:4(8Z,11Z,14Z,17Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_1519_KO_Cul3_SRP056432	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-4.13269
GATA1_02_60	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	5.48904
hsa-miR-765	TargetScan Predicted Conserved microRNA Targets	1.0	0.670641
Head and Neck squamous cell carcinoma_HNSC_TCGA-DQ-7593-01A-11R-2232-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(22:4(7Z,10Z,13Z,16Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:3(8Z,11Z,14Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:1(9Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(5Z,8Z,11Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(16:0/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
G82463GQ	GlyGen Glycosylated Proteins	1.0	null
GTEX-SIU7-0426-SM-2XCDX	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Perturb_2780_KD_HECTD1_SRP109301	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
PMC7594423-12915_2020_895_MOESM13_ESM.xlsx-Table_S6D-Table_S6D_-_Differentially_Expressed_genes_shared_between_BRCA_TRIM25_amp_and_STAD_CIC_Del_CIC	Rummagene Transcription Factor Associations 2026	1.0	null
superficial stratum of r10BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.54352
CLPP_KO_GSE40207_397_mouse_Brain	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
PC(18:2(9Z,12Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
H3K9me3_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PC(20:3(8Z,11Z,14Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
PMC8948659-ADVS-9-2104491-s013.xlsx-Sheet1-Supplemental_Table_9_related_to_Figure_7_Differential_genes_highly_correlated_with_TP53_deletion_in_H929_cells_by_RNA-seq_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
Immune system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.751
phospholipase c activity	GO Molecular Function Annotations 2015	1.0	null
A704	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71591
lateral part of r7B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.26067
CHD2	ENCODE Transcription Factor Targets	1.0	null
Lymph_Node-hematopoietic stem cell	Tabula Sapiens Gene-Cell Associations	1.0	-0.00884839
BATF_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062577
GSE243199_1_v_0_paclitaxel_human	RummaGEO Drug Perturbation Signatures	1.0	null
endoplasmic reticulum membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-7386-01A-11R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
periventricular stratum of cerebellar vermis	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.37959
PC(o-18:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-16:0/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-W5X1-0001-SM-3P61V	GTEx Tissue Sample Gene Expression Profiles	1.0	1.08809
localization	GO Biological Process Annotations 2015	1.0	null
Perturb_11593_OE_MYOD1_SRP105281	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
Perturb_7763_KD_IER3_SRP348787	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-15.8333
SPI1	ChEA Transcription Factor Targets	1.0	null
PC(18:3(9Z,12Z,15Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
sirolimus_rattus norvegicus_gpl6247_gse35048	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
PE(24:1(15Z)/14:0)	HMDB Metabolites of Enzymes	1.0	null
GSE178255_3_v_4_tlr4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE82032_3_v_5_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
PC(14:1(9Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(16:1(9Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
thyroid gland disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.08472
Endocytic vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
CHD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80528
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040951
PE(18:2(9Z,12Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:3(5Z,8Z,11Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01702
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15296
molecular_function	GO Molecular Function Annotations 2015	1.0	null
Perturb_6163_KO_Sh3gl1_SRP315284	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-2.19652
PC(22:1(13Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_509_KO_PAF1_ERP136917	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.98946
phospholipase d activity	GO Molecular Function Annotations 2015	1.0	null
GSE188870,GSE188871_4_v_5_kat7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(8Z,11Z,14Z,17Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-NPJ8-1626-SM-2HMIY	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
H3K27ac_brown adipose tissue_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-2.06013
GTEX-Q2AH-1626-SM-3GAF8	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(22:1(13Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:3(5Z,8Z,11Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-SSA3-0005-SM-32QOT	GTEx Tissue Sample Gene Expression Profiles	1.0	0.855402
GSE229978_4_v_1_morphine_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Crus 2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.02078
PC(18:3(6Z,9Z,12Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
PC(24:1(15Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PE(14:0/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_8798_OE_HOTAIR_SRP352837	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.35177
GSE145323,GSE145324_9_v_2_rfx3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
hippocampus (hippocampal formation)_37 pcw_M_263195015	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	0.889413
GTEX-VUSG-1526-SM-4KKZH	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(20:5(5Z,8Z,11Z,14Z,17Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:0/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_7756_KD_DIS3_SRP337423	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.10087
GSE127970_2_v_3_ebf1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(o-22:1(13Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
ZNF302	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.4329
PC(18:1(9Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:2(13Z,16Z)/P-16:0)	HMDB Metabolites of Enzymes	1.0	null
KYSE-410	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ETV5::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5024
GSE149903_4_v_7_myd88_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051061
PC(20:1(11Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
H3K4me1_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PC(o-18:1(9Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PC(O-16:0/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GSE152441,GSE152442_1_v_2_folic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PE(20:4(8Z,11Z,14Z,17Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(9Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GSE126463_6_v_3_pomalidomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PC(16:1(9Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
PE(20:1(11Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
blast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074694
PC(18:1(11Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Vesicle lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.937
posteroventral (inferior) parietal cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	-1.0	-1.63628
PE(24:1(15Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:2(9Z,12Z)/20:5(5Z,8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(24:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
GSE167886_2_v_1_chd7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
MAFG_02_189	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	4.80735
16166618-SuppTable3	GeneSigDB Published Gene Signatures	1.0	null
PE(18:1(9Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(14:1(9Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:5(5Z,8Z,11Z,14Z,17Z)/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:0/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:2(13Z,16Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(o-22:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_6424_KD_LOC646329_SRP220725	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.37566
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-5678-01A-11R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC4165364-13059_2014_406_MOESM5_ESM.xls-Supp_Dataset_1-SUPPLEMENTARY_DATASET_1_AML3_AzaC_SigDiff_1147_Note_to_reviewers_-_view_these_files_as_xls_RUNX2	Rummagene Transcription Factor Associations 2026	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A4IS-01A-21R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PE(18:4(6Z,9Z,12Z,15Z)/18:0)	HMDB Metabolites of Enzymes	1.0	null
PC(o-16:1(9Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Chilblain lupus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.208
GTEX-QDVN-0426-SM-48TZ6	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
GSE147210_3_v_4_kmt2d_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_14356_KD_TUT7_SRP120600	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-5.80229
496100451_TCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.08103
PMC7842189__F2	PFOCR Pathway Figure Associations 2024	1.0	null
Stat6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.8213
PE(15:0/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
gallbladder	HPA Tissue Protein Expression Profiles	1.0	0.742911
GTEX-WHWD-0426-SM-3LK83	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.827869
Perturb_4352_KD_EP300_SRP068733	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.55134
PE(24:0/22:0)	HMDB Metabolites of Enzymes	1.0	null
telencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059057
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Rheumatic disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.564
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045339
cerebral hemisphere	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060417
GSE137818_2_v_6_brca2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Perturb_13005_KD_SPI1_SRP090090	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
TE6	CCLE Cell Line Gene CNV Profiles	1.0	1.99752
PE(24:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:1(11Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(18:3(6Z,9Z,12Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
EBF1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC(15:0/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14091_OE_MIR372_SRP075051	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.43028
Perturb_2433_KD_RPL7_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.1146
GSE146865,GSE146866_4_v_3_saracatinib_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PE(P-18:1(9Z)/18:2(9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
GSE178227_1_v_2_tet1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PE(18:1(9Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
SNU2535	DepMap CRISPR Gene Dependency	1.0	2.42327
GSE162084,GSE162085_5_v_4_bap1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Perturb_15534_KD_YAP1/WWTR1_SRP365715	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.66471
Brain - Frontal Cortex (BA9)	GTEx Tissue Gene Expression Profiles 2023	1.0	2.79903
Perturb_9084_KO_NSUN2_SRP400807	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-5.4784
PE(18:3(9Z,12Z,15Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
t66-lung_consensus	MoTrPAC Rat Endurance Exercise Training	1.0	5.80382
PC(16:0/15:0)	HMDB Metabolites of Enzymes	1.0	null
GSE231720,GSE231724_3_v_0_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
TBX19	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6383
nucleus	GO Cellular Component Annotations 2015	1.0	null
GSE178255_2_v_7_tlr4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
H3K4me3_liver_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
GTEX-U4B1-1026-SM-4DXT1	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.83063
PE(18:1(9Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
GSE120612_7_v_1_etoposide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
superficial stratum of r8BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.96446
Obesity_Adipose tissue_GSE4692	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-0.976559
PC(22:4(7Z,10Z,13Z,16Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A5VV-06A-11R-A32P-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-NL4W-0011-R10A-SM-2I3DY	GTEx Tissue Sample Gene Expression Profiles	1.0	1.08041
intracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
PC(22:5(7Z,10Z,13Z,16Z,19Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
anterior orbital gyrus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.959505
PC(18:4(6Z,9Z,12Z,15Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
glial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.380251
SPI1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-QLQW-0126-SM-447BK	GTEx Tissue Sample Gene Expression Profiles	1.0	1.71061
PC(20:5(5Z,8Z,11Z,14Z,17Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
SFPI1-20887958-HPC-7-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
PC(22:5(7Z,10Z,13Z,16Z,19Z)/22:5(7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
SNU119	CCLE Cell Line Gene Expression Profiles	-1.0	-1.48769
skeletal muscle	HPA Tissue Gene Expression Profiles	-1.0	-1.97221
PE(14:1(9Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/16:0)	HMDB Metabolites of Enzymes	1.0	null
GTEX-UTHO-0726-SM-3GAEN	GTEx Tissue Sample Gene Expression Profiles	-1.0	-0.881864
PC(P-18:1(11Z)/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
heart_5b	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.91229
Synthesis of IP3 and IP4 in the cytosol	Reactome Pathways 2024	1.0	null
GTEX-XMD1-0011-R5A-SM-4AT47	GTEx Tissue Sample Gene Expression Profiles	1.0	1.17468
Perturb_3936_KD_MIR1290_SRP291996	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.84785
Connective tissue disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.751
Perturb_3343_KO_Sh3gl1_SRP315284	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-1.89942
inferolateral temporal cortex (area TEv, area 20)_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.878623
PE(18:1(11Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
KMS28BM	CCLE Cell Line Gene Expression Profiles	1.0	1.54413
PC(18:3(9Z,12Z,15Z)/20:2(11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
sparse hair	MPO Gene-Phenotype Associations	1.0	null
H3K9me3_iPS DF 6.9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
PC(P-18:1(9Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(o-22:0/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE234637_3_v_0_cytarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
PE(18:1(11Z)/24:1(15Z))	HMDB Metabolites of Enzymes	1.0	null
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052848
PC(o-16:1(9Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PC(20:5(5Z,8Z,11Z,14Z,17Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE231799_3_v_5_nfkbie_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-XUW1-0008-SM-4BOQH	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(20:3(8Z,11Z,14Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(P-18:1(11Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(5Z,8Z,11Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(8Z,11Z,14Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
PE(22:4(7Z,10Z,13Z,16Z)/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_2090_KD_H2AZ1_SRP199103	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.91213
PC(o-20:0/20:0)	HMDB Metabolites of Enzymes	1.0	null
PC(16:0/14:0)	HMDB Metabolites of Enzymes	1.0	null
Perturb_8924_KD_LINC01133a_SRP320645	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.13179
phosphoric diester hydrolase activity	GO Molecular Function Annotations 2015	1.0	null
Perturb_41_OE_MicroRNA101_SRP328889	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.27748
PC(20:2(11Z,14Z)/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:0/22:4(7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
IV, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.84436
GTEX-X4EO-0006-SM-3P5ZF	GTEx Tissue Sample Gene Expression Profiles	1.0	0.838267
Perturb_482_KD_IFI16_SRP298943	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.92004
GSE211983_1_v_2_nicotine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GTEX-OOBJ-0326-SM-33HBO	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PE(15:0/20:4(5Z,8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
CUX1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Perturb_11597_OE_MYOD1_SRP106379	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.9991
PC(22:5(7Z,10Z,13Z,16Z,19Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
CHD2_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PE(20:0/22:1(13Z))	HMDB Metabolites of Enzymes	1.0	null
GSE227891_5_v_3_ethanol_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GSE180200,GSE180201_12_v_6_qpctl_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE211983_1_v_3_nicotine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PE(22:5(7Z,10Z,13Z,16Z,19Z)/P-18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(P-18:1(11Z)/18:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
regulation of cytokine production involved in inflammatory response	GO Biological Process Annotations 2023	1.0	null
superficial stratum of cerebellar vermis	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.15967
PE(20:4(8Z,11Z,14Z,17Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-6482-01A-11R-1873-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PC(16:0/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Bone disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.751
PC(18:1(9Z)/20:1(11Z))	HMDB Metabolites of Enzymes	1.0	null
PC(18:3(6Z,9Z,12Z)/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-V1D1-2426-SM-3GAER	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
ventrolateral prefrontal cortex_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq	1.0	0.982077
PC(16:1(9Z)/P-18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
PE(14:0/22:2(13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_14055_OE_NFIB_SRP281947	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	12.6437
Perturb_2356_KD_IRX6_SRP072302	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	6.53258
Kidney renal papillary cell carcinoma_KIRP_TCGA-DZ-6132-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_6879_KD_LINC00857_SRP371132	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
GTEX-VUSG-1726-SM-4KKZL	GTEx Tissue Sample Gene Expression Profiles	1.0	2.27918
autoimmunity	GeneRIF Biological Term Annotations	1.0	null
GTEX-S7SF-1826-SM-3K2AD	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Fastigial nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.36046
GTEX-QEG5-0926-SM-2TC64	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
PC(20:2(11Z,14Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Primary somatosensory area, mouth, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.15597
GTEX-R55E-0006-SM-2TC5G	GTEx Tissue Sample Gene Expression Profiles	1.0	2.06611
trans-Golgi network membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
CP in caudal hippocampus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.1265
Perturb_598_OE_HOTAIR_SRP342161	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
PC(24:1(15Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
RCC 786-O cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.694
PC(o-20:0/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
PMC5415769__F2	PFOCR Pathway Figure Associations 2024	1.0	null
PC(18:4(6Z,9Z,12Z,15Z)/22:5(4Z,7Z,10Z,13Z,16Z))	HMDB Metabolites of Enzymes	1.0	null
PE(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/24:0)	HMDB Metabolites of Enzymes	1.0	null
PC(14:1(9Z)/20:3(8Z,11Z,14Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_7867_KD_RNaseH2A_SRP252761	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.30113
PC(20:4(8Z,11Z,14Z,17Z)/20:0)	HMDB Metabolites of Enzymes	1.0	null
PE(24:0/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_9639_KO_CHCHD2_SRP212886	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-7.00711
PC(20:3(8Z,11Z,14Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:3(5Z,8Z,11Z)/18:3(6Z,9Z,12Z))	HMDB Metabolites of Enzymes	1.0	null
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/18:4(6Z,9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_2196_KO_Tnfaip3_SRP103751	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	20.0
PC(22:0/18:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_2827_OE_ERK1_SRP064353	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.83861
PC(20:2(11Z,14Z)/20:4(8Z,11Z,14Z,17Z))	HMDB Metabolites of Enzymes	1.0	null
Climbing fiber	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.623
PE(22:5(7Z,10Z,13Z,16Z,19Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))	HMDB Metabolites of Enzymes	1.0	null
bounding membrane of organelle	GO Cellular Component Annotations 2015	1.0	null
H4K91ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7432-11A-01R-2132-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
nucleolus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.18859
GSE185519_1_v_2_gilteritinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
PE(24:1(15Z)/P-18:0)	HMDB Metabolites of Enzymes	1.0	null
GSE167886_3_v_1_chd7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PC(22:2(13Z,16Z)/15:0)	HMDB Metabolites of Enzymes	1.0	null
GFI1B	ChEA Transcription Factor Targets	1.0	null
PE(20:3(8Z,11Z,14Z)/18:3(9Z,12Z,15Z))	HMDB Metabolites of Enzymes	1.0	null
PE(20:4(5Z,8Z,11Z,14Z)/20:3(5Z,8Z,11Z))	HMDB Metabolites of Enzymes	1.0	null
GSE174498,GSE174500_2_v_7_asparaginase_human	RummaGEO Drug Perturbation Signatures	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/16:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
Perturb_17651_KD_HEXIM1_SRP334520	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.59852
PE(14:1(9Z)/22:0)	HMDB Metabolites of Enzymes	1.0	null
PC(20:4(5Z,8Z,11Z,14Z)/14:1(9Z))	HMDB Metabolites of Enzymes	1.0	null
GTEX-XBED-0526-SM-47JY3	GTEx Tissue Sample Gene Expression Profiles	-1.0	-1.31703
Kidney renal papillary cell carcinoma_KIRP_TCGA-EV-5903-01A-11R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null